tomwer 1.3.0.dev2__py3-none-any.whl → 1.3.0rc10__py3-none-any.whl

{tomwer-1.3.0.dev2.dist-info → tomwer-1.3.0rc10.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.40.0)
+Generator: bdist_wheel (0.42.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

orangecontrib/tomwer/widgets/reconstruction/TofuOW.py

@@ -1,197 +0,0 @@
-# coding: utf-8
-# /*##########################################################################
-#
-# Copyright (c) 2016-2020 European Synchrotron Radiation Facility
-#
-# Permission is hereby granted, free of charge, to any person obtaining a copy
-# of this software and associated documentation files (the "Software"), to deal
-# in the Software without restriction, including without limitation the rights
-# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-# copies of the Software, and to permit persons to whom the Software is
-# furnished to do so, subject to the following conditions:
-#
-# The above copyright notice and this permission notice shall be included in
-# all copies or substantial portions of the Software.
-#
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-# OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
-# THE SOFTWARE.
-#
-# ###########################################################################*/
-
-__authors__ = ["C. Nemoz", "H. Payno"]
-__license__ = "MIT"
-__date__ = "10/01/2018"
-
-
-import copy
-import functools
-import logging
-import os
-
-from orangewidget import gui, settings
-from orangewidget.widget import Input, Output
-from silx.gui import qt
-
-import tomwer.core.process.reconstruction.lamino.tofu
-from orangecontrib.tomwer.orange.settings import CallbackSettingsHandler
-from tomwer.core.process.reconstruction.lamino import LaminoReconstructionTask
-from tomwer.core.scan.scanbase import TomwerScanBase
-from tomwer.gui.reconstruction.lamino.tofu import TofuWindow
-from tomwer.synctools.stacks.reconstruction.lamino import LaminoReconstructionStack
-from tomwer.utils import docstring
-
-from ...orange.managedprocess import SuperviseOW
-from ..utils import WidgetLongProcessing
-
-_logger = logging.getLogger(__name__)
-
-
-class TofuOW(WidgetLongProcessing, SuperviseOW):
-    """
-    A simple widget managing the copy of an incoming folder to an other one
-
-    :param parent: the parent widget
-    """
-
-    # note of this widget should be the one registered on the documentation
-    name = "tofu reconstruction"
-    id = "orange.widgets.tomwer.reconstruction.TofuOW.TofuOW"
-    description = "This widget will call tofu for running a reconstruction "
-    icon = "icons/XY_lamino.svg"
-    priority = 25
-    keywords = ["tomography", "tofu", "reconstruction", "lamino", "laminography"]
-
-    want_main_area = True
-    resizing_enabled = True
-
-    settingsHandler = CallbackSettingsHandler()
-
-    ewokstaskclass = (
-        tomwer.core.process.reconstruction.lamino.tofu.LaminoReconstructionTask
-    )
-
-    _reconsParams = settings.Setting(dict())
-    """Parameters directly editabled from the TOFU interface"""
-    # kept for compatibility
-    _ewoks_default_inputs = settings.Setting({"data": None, "lamino_params": None})
-
-    _additionalOpts = settings.Setting(dict())
-    """Parameters which can be add on the expert tab from TOFU"""
-    _delete_existing = settings.Setting(bool())
-    """Should we remove the output directory if exists already"""
-
-    class Inputs:
-        data = Input(name="data", type=TomwerScanBase, doc="one scan to be process")
-
-    class Outputs:
-        data = Output(name="data", type=TomwerScanBase, doc="one scan to be process")
-
-    def __init__(self, parent=None):
-        SuperviseOW.__init__(self, parent=parent)
-        WidgetLongProcessing.__init__(self)
-        self._lastScan = None
-        self._box = gui.vBox(self.mainArea, self.name)
-        self._mainWidget = TofuWindow(parent=self)
-        self._box.layout().addWidget(self._mainWidget)
-        self._widgetControl = qt.QWidget(self)
-        self._widgetControl.setLayout(qt.QHBoxLayout())
-        self._executeButton = qt.QPushButton("reprocess", self._widgetControl)
-        self._executeButton.clicked.connect(self._reprocess)
-        self._executeButton.setEnabled(False)
-        spacer = qt.QWidget(self)
-        spacer.setSizePolicy(qt.QSizePolicy.Expanding, qt.QSizePolicy.Minimum)
-        self._widgetControl.layout().addWidget(spacer)
-        self._widgetControl.layout().addWidget(self._executeButton)
-
-        self._box.layout().addWidget(self._mainWidget)
-        self._box.layout().addWidget(self._widgetControl)
-
-        lamino_params = self._ewoks_default_inputs.get(  # pylint: disable=E1101
-            "lamino_params", None
-        )
-        if lamino_params is None:
-            lamino_params = self._reconsParams
-        self._mainWidget.setParameters(lamino_params)
-        if len(self._additionalOpts) > 0:
-            self._mainWidget.setAdditionalRecoOptions(self._additionalOpts)
-        self._mainWidget.setRemoveOutputDir(self._delete_existing)
-
-        self.settingsHandler.addCallback(self._updateSettingsVals)
-
-        self._reconsStack = LaminoReconstructionStack(process_id=self.process_id)
-
-        # signal / slot connections
-        self._reconsStack.sigReconsStarted.connect(self.__processing_start)
-        self._reconsStack.sigReconsFinished.connect(self.__processing_end)
-        self._reconsStack.sigReconsFailed.connect(self.__processing_end)
-        self._reconsStack.sigReconsMissParams.connect(self.__processing_end)
-
-    @Inputs.data
-    def process(self, scan):
-        if scan is not None:
-            assert isinstance(scan, TomwerScanBase)
-            scan_ = copy.copy(scan)
-            self._executeButton.setEnabled(True)
-            self._lastScan = scan_
-            self._mainWidget.loadFromScan(scan_.path)
-            recons_param = self._mainWidget.getParameters()
-            add_options = self._mainWidget.getAdditionalRecoOptions()
-            # TODO: should be recorded in self._viewer widget
-
-            remove_existing = self._mainWidget.removeOutputDir()
-
-            callback = functools.partial(self.Outputs.data.send, scan_)
-            self._reconsStack.add(
-                recons_obj=LaminoReconstructionTask(),
-                scan_id=scan_,
-                recons_params=recons_param,
-                additional_opts=add_options,
-                remove_existing=remove_existing,
-                callback=callback,
-            )
-
-    @docstring(SuperviseOW)
-    def reprocess(self, dataset):
-        self.process(dataset)
-
-    def _reprocess(self):
-        if self._lastScan is None:
-            _logger.warning("No scan has been process yet")
-        elif os.path.isdir(self._lastScan) is False:
-            _logger.warning("Last scan %s, does not exist anymore" % self._lastScan)
-            self._executeButton.setEnabled(False)
-        else:
-            self.process(self._lastScan)
-
-    def _updateSettingsVals(self):
-        """function used to update the settings values"""
-        self._reconsParams = self._mainWidget.getParameters()
-        self.lamino_params = {
-            "data": None,
-            "lamino_params": self._mainWidget.getParameters(),
-        }
-
-        self._additionalOpts = self._mainWidget.getAdditionalRecoOptions()
-        self._delete_existing = self._mainWidget.removeOutputDir()
-
-    def __processing_start(self, scan):
-        self.processing_state(scan=scan, working=True)
-
-    def __processing_end(self, scan):
-        self.processing_state(scan=scan, working=False)
-
-    def processing_state(self, scan, working: bool) -> None:
-        # default orange version don't have Processing.
-        try:
-            if working:
-                self.processing_info("processing %s" % scan.path)
-
-            else:
-                self.Processing.clear()
-        except Exception:
-            pass

orangecontrib/tomwer/widgets/reconstruction/icons/XY_lamino.svg

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