tomwer 1.2.0a1__py3-none-any.whl → 1.2.0a3__py3-none-any.whl

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Files changed (219) hide show
  1. orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows +44 -0
  2. orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows +55 -0
  3. orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth2.ows +48 -0
  4. orangecontrib/tomwer/tutorials/default_cor_search.ows +40 -0
  5. orangecontrib/tomwer/tutorials/hello_world_python_script.ows +50 -0
  6. orangecontrib/tomwer/tutorials/simple_slice_reconstruction_on_slurm.ows +50 -0
  7. orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows +8 -8
  8. orangecontrib/tomwer/widgets/__init__.py +1 -1
  9. orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py +0 -1
  10. orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py +8 -6
  11. orangecontrib/tomwer/widgets/control/AdvancementOW.py +0 -1
  12. orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py +1 -6
  13. orangecontrib/tomwer/widgets/control/DataListOW.py +0 -1
  14. orangecontrib/tomwer/widgets/control/DataListenerOW.py +4 -4
  15. orangecontrib/tomwer/widgets/control/DataSelectorOW.py +0 -1
  16. orangecontrib/tomwer/widgets/control/DataTransfertOW.py +7 -7
  17. orangecontrib/tomwer/widgets/control/DataValidatorOW.py +0 -1
  18. orangecontrib/tomwer/widgets/control/DataWatcherOW.py +0 -3
  19. orangecontrib/tomwer/widgets/control/EDF2NXTomomillOW.py +3 -2
  20. orangecontrib/tomwer/widgets/control/EmailOW.py +82 -0
  21. orangecontrib/tomwer/widgets/control/FilterOW.py +3 -3
  22. orangecontrib/tomwer/widgets/control/NXTomomillOW.py +1 -1
  23. orangecontrib/tomwer/widgets/control/NotifierOW.py +0 -1
  24. orangecontrib/tomwer/widgets/control/ReduceDarkFlatSelectorOW.py +93 -0
  25. orangecontrib/tomwer/widgets/control/SingleTomoObjOW.py +29 -5
  26. orangecontrib/tomwer/widgets/control/TimerOW.py +1 -2
  27. orangecontrib/tomwer/widgets/control/TomoObjSerieOW.py +0 -1
  28. orangecontrib/tomwer/widgets/control/VolumeSelector.py +0 -1
  29. orangecontrib/tomwer/widgets/control/VolumeSymLinkOW.py +4 -10
  30. orangecontrib/tomwer/widgets/control/icons/email.png +0 -0
  31. orangecontrib/tomwer/widgets/control/icons/email.svg +58 -0
  32. orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.png +0 -0
  33. orangecontrib/tomwer/widgets/control/icons/reduced_darkflat_selector.svg +199 -0
  34. orangecontrib/tomwer/widgets/debugtools/DatasetGeneratorOW.py +0 -1
  35. orangecontrib/tomwer/widgets/debugtools/ObjectInspectorOW.py +0 -1
  36. orangecontrib/tomwer/widgets/edit/DarkFlatPatchOW.py +1 -2
  37. orangecontrib/tomwer/widgets/edit/ImageKeyEditorOW.py +1 -2
  38. orangecontrib/tomwer/widgets/edit/ImageKeyUpgraderOW.py +0 -1
  39. orangecontrib/tomwer/widgets/edit/NXtomoEditorOW.py +0 -1
  40. orangecontrib/tomwer/widgets/other/PythonScriptOW.py +29 -1
  41. orangecontrib/tomwer/widgets/other/TomoObjsHub.py +28 -0
  42. orangecontrib/tomwer/widgets/other/icons/hub.png +0 -0
  43. orangecontrib/tomwer/widgets/other/icons/hub.svg +113 -0
  44. orangecontrib/tomwer/widgets/reconstruction/AxisOW.py +18 -12
  45. orangecontrib/tomwer/widgets/reconstruction/CastNabuVolumeOW.py +0 -2
  46. orangecontrib/tomwer/widgets/reconstruction/DarkRefAndCopyOW.py +21 -6
  47. orangecontrib/tomwer/widgets/reconstruction/NabuOW.py +29 -7
  48. orangecontrib/tomwer/widgets/reconstruction/NabuVolumeOW.py +18 -5
  49. orangecontrib/tomwer/widgets/reconstruction/SAAxisOW.py +40 -13
  50. orangecontrib/tomwer/widgets/reconstruction/SADeltaBetaOW.py +37 -10
  51. orangecontrib/tomwer/widgets/reconstruction/SinoNormOW.py +2 -3
  52. orangecontrib/tomwer/widgets/reconstruction/TofuOW.py +5 -4
  53. orangecontrib/tomwer/widgets/stitching/StitcherOW.py +0 -1
  54. orangecontrib/tomwer/widgets/stitching/ZStitchingConfigOW.py +0 -1
  55. orangecontrib/tomwer/widgets/visualization/DataViewerOW.py +10 -4
  56. orangecontrib/tomwer/widgets/visualization/DiffViewerOW.py +1 -1
  57. orangecontrib/tomwer/widgets/visualization/LivesliceOW.py +0 -1
  58. orangecontrib/tomwer/widgets/visualization/NXtomoMetadataViewerOW.py +0 -1
  59. orangecontrib/tomwer/widgets/visualization/RadioStackOW.py +7 -5
  60. orangecontrib/tomwer/widgets/visualization/SampleMovedOW.py +1 -1
  61. orangecontrib/tomwer/widgets/visualization/SinogramViewerOW.py +0 -3
  62. orangecontrib/tomwer/widgets/visualization/SliceStackOW.py +7 -5
  63. orangecontrib/tomwer/widgets/visualization/VolumeViewerOW.py +4 -4
  64. tomwer/__main__.py +139 -5
  65. tomwer/app/axis.py +16 -5
  66. tomwer/app/canvas_launcher/config.py +1 -1
  67. tomwer/app/canvas_launcher/mainwindow.py +164 -6
  68. tomwer/app/darkref.py +10 -181
  69. tomwer/app/darkrefpatch.py +10 -131
  70. tomwer/app/diffframe.py +11 -0
  71. tomwer/app/imagekeyeditor.py +12 -19
  72. tomwer/app/intensitynormalization.py +1 -0
  73. tomwer/app/lamino.py +7 -2
  74. tomwer/app/patchrawdarkflat.py +131 -0
  75. tomwer/app/radiostack.py +10 -0
  76. tomwer/app/reducedarkflat.py +205 -0
  77. tomwer/app/saaxis.py +27 -8
  78. tomwer/app/sadeltabeta.py +29 -8
  79. tomwer/app/samplemoved.py +11 -0
  80. tomwer/app/scanviewer.py +12 -0
  81. tomwer/app/sinogramviewer.py +11 -0
  82. tomwer/app/slicestack.py +11 -0
  83. tomwer/app/zstitching.py +12 -0
  84. tomwer/core/futureobject.py +4 -2
  85. tomwer/core/process/conditions/filters.py +26 -4
  86. tomwer/core/process/control/datadiscovery.py +4 -0
  87. tomwer/core/process/control/datawatcher/datawatcher.py +5 -1
  88. tomwer/core/process/control/email.py +148 -0
  89. tomwer/core/process/control/nxtomoconcatenate.py +9 -2
  90. tomwer/core/process/control/nxtomomill.py +58 -16
  91. tomwer/core/process/control/scanselector.py +4 -0
  92. tomwer/core/process/control/scantransfer.py +52 -23
  93. tomwer/core/process/control/test/test_concatenate_nxtomos.py +1 -0
  94. tomwer/core/process/control/test/test_email.py +52 -0
  95. tomwer/core/process/control/test/test_h52nx_process.py +106 -0
  96. tomwer/core/process/control/test/test_volume_link.py +5 -4
  97. tomwer/core/process/control/timer.py +27 -6
  98. tomwer/core/process/control/tomoobjserie.py +4 -0
  99. tomwer/core/process/control/volumeselector.py +4 -0
  100. tomwer/core/process/control/volumesymlink.py +47 -8
  101. tomwer/core/process/edit/darkflatpatch.py +49 -8
  102. tomwer/core/process/edit/imagekeyeditor.py +63 -13
  103. tomwer/core/process/reconstruction/axis/__init__.py +1 -1
  104. tomwer/core/process/reconstruction/axis/axis.py +61 -41
  105. tomwer/core/process/reconstruction/axis/params.py +4 -6
  106. tomwer/core/process/reconstruction/darkref/darkrefs.py +53 -16
  107. tomwer/core/process/reconstruction/darkref/darkrefscopy.py +12 -2
  108. tomwer/core/process/reconstruction/lamino/__init__.py +1 -1
  109. tomwer/core/process/reconstruction/lamino/tofu.py +22 -2
  110. tomwer/core/process/reconstruction/nabu/nabucommon.py +93 -14
  111. tomwer/core/process/reconstruction/nabu/nabuscores.py +70 -33
  112. tomwer/core/process/reconstruction/nabu/nabuslices.py +219 -41
  113. tomwer/core/process/reconstruction/nabu/nabuvolume.py +240 -108
  114. tomwer/core/process/reconstruction/nabu/utils.py +10 -36
  115. tomwer/core/process/reconstruction/normalization/normalization.py +10 -3
  116. tomwer/core/process/reconstruction/saaxis/__init__.py +1 -0
  117. tomwer/core/process/reconstruction/saaxis/saaxis.py +564 -376
  118. tomwer/core/process/reconstruction/sadeltabeta/__init__.py +1 -0
  119. tomwer/core/process/reconstruction/sadeltabeta/sadeltabeta.py +481 -268
  120. tomwer/core/process/reconstruction/scores/params.py +21 -8
  121. tomwer/core/process/reconstruction/test/test_darkref_copy.py +2 -0
  122. tomwer/core/process/reconstruction/test/test_saaxis.py +21 -8
  123. tomwer/core/process/reconstruction/test/test_sadeltabeta.py +8 -5
  124. tomwer/core/process/script/python.py +7 -2
  125. tomwer/core/process/stitching/nabustitcher.py +10 -3
  126. tomwer/core/process/task.py +2 -9
  127. tomwer/core/process/test/test_axis.py +25 -15
  128. tomwer/core/process/test/test_conditions.py +6 -6
  129. tomwer/core/process/test/test_dark_and_flat.py +20 -15
  130. tomwer/core/process/test/test_data_transfer.py +8 -8
  131. tomwer/core/process/test/test_data_watcher.py +1 -1
  132. tomwer/core/process/test/test_lamino.py +6 -6
  133. tomwer/core/process/test/test_nabu.py +13 -8
  134. tomwer/core/process/test/test_normalization.py +1 -0
  135. tomwer/core/process/test/test_timer.py +6 -6
  136. tomwer/core/process/visualization/dataviewer.py +4 -0
  137. tomwer/core/process/visualization/diffviewer.py +4 -0
  138. tomwer/core/process/visualization/imagestackviewer.py +4 -0
  139. tomwer/core/process/visualization/radiostack.py +4 -0
  140. tomwer/core/process/visualization/samplemoved.py +4 -0
  141. tomwer/core/process/visualization/sinogramviewer.py +4 -0
  142. tomwer/core/process/visualization/slicestack.py +4 -0
  143. tomwer/core/process/visualization/volumeviewer.py +4 -0
  144. tomwer/core/scan/hdf5scan.py +4 -4
  145. tomwer/core/scan/scanbase.py +5 -1
  146. tomwer/core/scan/test/test_process_registration.py +9 -9
  147. tomwer/core/settings.py +59 -1
  148. tomwer/core/test/test_lamino.py +2 -1
  149. tomwer/core/utils/__init__.py +16 -0
  150. tomwer/core/utils/locker.py +0 -1
  151. tomwer/core/utils/resource.py +6 -11
  152. tomwer/core/utils/scanutils.py +2 -0
  153. tomwer/gui/cluster/slurm.py +91 -7
  154. tomwer/gui/cluster/supervisor.py +16 -11
  155. tomwer/gui/cluster/test/test_cluster.py +16 -1
  156. tomwer/gui/conditions/filter.py +3 -3
  157. tomwer/gui/control/datalist.py +24 -11
  158. tomwer/gui/control/email.py +183 -0
  159. tomwer/gui/control/reducedarkflatselector.py +545 -0
  160. tomwer/gui/control/singletomoobj.py +23 -1
  161. tomwer/gui/control/test/test_email.py +35 -0
  162. tomwer/gui/control/test/test_reducedarkflat_selector.py +280 -0
  163. tomwer/gui/reconstruction/axis/CompareImages.py +1 -1
  164. tomwer/gui/reconstruction/axis/axis.py +10 -6
  165. tomwer/gui/reconstruction/axis/radioaxis.py +14 -6
  166. tomwer/gui/reconstruction/darkref/darkrefcopywidget.py +2 -0
  167. tomwer/gui/reconstruction/darkref/darkrefwidget.py +4 -4
  168. tomwer/gui/reconstruction/nabu/nabuconfig/phase.py +3 -1
  169. tomwer/gui/reconstruction/nabu/nabuconfig/preprocessing.py +34 -33
  170. tomwer/gui/reconstruction/nabu/nabuconfig/reconstruction.py +1 -1
  171. tomwer/gui/reconstruction/normalization/intensity.py +5 -5
  172. tomwer/gui/reconstruction/saaxis/corrangeselector.py +1 -0
  173. tomwer/gui/reconstruction/saaxis/saaxis.py +6 -6
  174. tomwer/gui/reconstruction/sadeltabeta/saadeltabeta.py +6 -6
  175. tomwer/gui/reconstruction/scores/scoreplot.py +6 -4
  176. tomwer/gui/samplemoved/__init__.py +2 -2
  177. tomwer/gui/stackplot.py +18 -7
  178. tomwer/gui/stacks.py +2 -2
  179. tomwer/gui/stitching/stitchandbackground.py +2 -2
  180. tomwer/gui/stitching/stitching.py +1 -1
  181. tomwer/gui/stitching/stitching_raw.py +1 -1
  182. tomwer/gui/utils/__init__.py +1 -85
  183. tomwer/gui/utils/illustrations.py +1 -1
  184. tomwer/gui/utils/inputwidget.py +41 -36
  185. tomwer/gui/utils/slider.py +2 -2
  186. tomwer/gui/utils/utils.py +93 -0
  187. tomwer/gui/visualization/dataviewer.py +8 -5
  188. tomwer/gui/visualization/diffviewer/diffviewer.py +4 -4
  189. tomwer/gui/visualization/reconstructionparameters.py +26 -6
  190. tomwer/gui/visualization/sinogramviewer.py +7 -1
  191. tomwer/gui/visualization/test/test_reconstruction_parameters.py +2 -4
  192. tomwer/gui/visualization/volumeviewer.py +2 -0
  193. tomwer/resources/__init__.py +55 -43
  194. tomwer/resources/gui/icons/compose.png +0 -0
  195. tomwer/resources/gui/icons/compose.svg +75 -0
  196. tomwer/synctools/datatransfert.py +3 -1
  197. tomwer/synctools/stacks/edit/darkflatpatch.py +39 -34
  198. tomwer/synctools/stacks/edit/imagekeyeditor.py +8 -27
  199. tomwer/synctools/stacks/processingstack.py +45 -9
  200. tomwer/synctools/stacks/reconstruction/axis.py +6 -5
  201. tomwer/synctools/stacks/reconstruction/dkrefcopy.py +1 -0
  202. tomwer/synctools/stacks/reconstruction/lamino.py +3 -3
  203. tomwer/synctools/stacks/reconstruction/nabu.py +49 -140
  204. tomwer/synctools/stacks/reconstruction/normalization.py +1 -0
  205. tomwer/synctools/stacks/reconstruction/saaxis.py +19 -33
  206. tomwer/synctools/stacks/reconstruction/sadeltabeta.py +16 -32
  207. tomwer/synctools/test/test_darkRefs.py +19 -10
  208. tomwer/synctools/test/test_foldertransfer.py +7 -7
  209. tomwer/third_party/nabu/preproc/phase.py +6 -8
  210. tomwer/third_party/nabu/utils.py +2 -3
  211. tomwer/version.py +1 -1
  212. {tomwer-1.2.0a1.dist-info → tomwer-1.2.0a3.dist-info}/METADATA +15 -54
  213. {tomwer-1.2.0a1.dist-info → tomwer-1.2.0a3.dist-info}/RECORD +219 -192
  214. {tomwer-1.2.0a1.dist-info → tomwer-1.2.0a3.dist-info}/WHEEL +1 -1
  215. {tomwer-1.2.0a1.dist-info → tomwer-1.2.0a3.dist-info}/entry_points.txt +3 -3
  216. /tomwer-1.2.0a1-py3.9-nspkg.pth → /tomwer-1.2.0a3-py3.11-nspkg.pth +0 -0
  217. {tomwer-1.2.0a1.dist-info → tomwer-1.2.0a3.dist-info}/LICENSE +0 -0
  218. {tomwer-1.2.0a1.dist-info → tomwer-1.2.0a3.dist-info}/namespace_packages.txt +0 -0
  219. {tomwer-1.2.0a1.dist-info → tomwer-1.2.0a3.dist-info}/top_level.txt +0 -0
tomwer/core/process/reconstruction/sadeltabeta/__init__.py CHANGED
@@ -1,2 +1,3 @@
1
1
  from .params import SADeltaBetaParams # noqa F401
2
2
  from .sadeltabeta import SADeltaBetaProcess # noqa F401
3
+ from .sadeltabeta import SADeltaBetaTask # noqa F401