tomwer 1.2.0a1__py3-none-any.whl → 1.2.0a3__py3-none-any.whl

orangecontrib/tomwer/tutorials/append_raw_darks_and_flats_frames_to_NXtomos.ows

@@ -0,0 +1,44 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="Append dark and flat frames to an NXtomo" description="">
+	<nodes>
+		<node id="0" name="image-key-upgrader" qualified_name="orangecontrib.tomwer.widgets.edit.ImageKeyUpgraderOW.ImageKeyUpgraderOW" project_name="tomwer" version="" title="image-key-upgrader" position="(336.0, 221.0)" />
+		<node id="1" name="dark-flat-patch" qualified_name="orangecontrib.tomwer.widgets.edit.DarkFlatPatchOW.DarkFlatPatchOW" project_name="tomwer" version="" title="dark-flat-patch" position="(579.0, 221.0)" />
+		<node id="2" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(781.0, 221.0)" />
+		<node id="3" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(133.0, 222.0)" />
+		<node id="4" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector (1)" position="(981.0, 222.0)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="3" sink_node_id="0" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="1" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="2" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="3" source_node_id="2" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+	</links>
+	<annotations>
+		<text id="0" type="text/plain" rect="(68.0, 8.0, 740.0, 86.0)" font-family="Sans" font-size="16">Context: we want to modify an NXtomo in order to append some (raw) darks / flats to it.
+Then those raw darks and flats will be used for reduced darks / flats calculation.
+
+warning: reduced darks and flats are usually mean / median of a serie of darks / flats. when raw darks and flats are raw frame before mean / median 'reduction'</text>
+		<text id="1" type="text/plain" rect="(65.0, 360.0, 150.0, 88.0)" font-family="Sans" font-size="16">NXtomo to be patched
+Step 3 : process NXtomo</text>
+		<text id="2" type="text/plain" rect="(249.0, 355.0, 220.0, 135.0)" font-family="Sans" font-size="16">step1: define frame series to be ignored (here darks and flats series to avoid conflict with the one added by the dark / flat patch)</text>
+		<arrow id="3" start="(130.0, 345.0)" end="(131.0, 286.0)" fill="#C1272D" />
+		<arrow id="4" start="(337.0, 345.0)" end="(336.99999999999994, 283.0)" fill="#C1272D" />
+		<text id="5" type="text/plain" rect="(912.0, 350.0, 233.0, 158.0)" font-family="Sans" font-size="16">result: NXtomo with patched frame (step 2) and reduced darks and flats to be used for reconstruction</text>
+		<arrow id="6" start="(981.9999999999999, 332.0)" end="(982.9999999999999, 278.0)" fill="#C1272D" />
+		<text id="7" type="text/plain" rect="(700.0, 349.0, 183.0, 126.0)" font-family="Sans" font-size="16">standard darks / flats reduction (but taking into account patched darks / flats frames)</text>
+		<arrow id="8" start="(780.0000000000001, 342.0)" end="(782.0000000000001, 296.0)" fill="#C1272D" />
+		<text id="9" type="text/plain" rect="(506.0, 347.0, 150.0, 145.0)" font-family="Sans" font-size="16">step2: provide series of darks / flats from other(s) NXtomo to be added to the `NXtomo to be patched`</text>
+		<arrow id="10" start="(574.0, 338.0)" end="(573.0, 281.0)" fill="#C1272D" />
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_ewoks_default_inputs': {'operations': {}}, '_ewoks_execinfo': {}, '_ewoks_varinfo': {}, 'controlAreaVisible': True, 'default_inputs': {}, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x07\xe6\x00\x00\x01\x18\x00\x00\n/\x00\x00\x03-\x00\x00\x07\xeb\x00\x00\x015\x00\x00\n*\x00\x00\x03(\x00\x00\x00\x01\x00\x00\x00\x00\x07\x7f\x00\x00\x07\xeb\x00\x00\x015\x00\x00\n*\x00\x00\x03(', '__version__': 1}</properties>
+		<properties node_id="1" format="literal">{'_urlsSetting': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="2" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': {'DOWHEN': 'before', 'DARKCAL': 'mean', 'DARKOVE': 0, 'DARKRMV': 0, 'DKFILE': 'darkend[0-9]{3,4}', 'REFSCAL': 'median', 'REFSOVE': 0, 'REFSRMV': 0, 'RFFILE': 'ref*.*[0-9]{3,4}_[0-9]{3,4}'}}, 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x06\x9b\x00\x00\x02K\x00\x00\n\x95\x00\x00\x04\x8f\x00\x00\x06\xa0\x00\x00\x02h\x00\x00\n\x90\x00\x00\x04\x8a\x00\x00\x00\x01\x00\x00\x00\x00\x07\x7f\x00\x00\x06\xa0\x00\x00\x02h\x00\x00\n\x90\x00\x00\x04\x8a', '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="4" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth1.ows

@@ -0,0 +1,55 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="darks and flats copy - method 1" description="">
+	<nodes>
+		<node id="0" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(-519.0, -209.0)" />
+		<node id="1" name="image-key-upgrader" qualified_name="orangecontrib.tomwer.widgets.edit.ImageKeyUpgraderOW.ImageKeyUpgraderOW" project_name="tomwer" version="" title="image-key-upgrader" position="(-293.0, -209.0)" />
+		<node id="2" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(65.0, -226.0)" />
+		<node id="3" name="single tomo obj" qualified_name="orangecontrib.tomwer.widgets.control.SingleTomoObjOW.SingleTomoObjOW" project_name="tomwer" version="" title="scan with darks to be used" position="(-79.0, -439.0)" />
+		<node id="4" name="single tomo obj" qualified_name="orangecontrib.tomwer.widgets.control.SingleTomoObjOW.SingleTomoObjOW" project_name="tomwer" version="" title="scan with reduced flats to be used" position="(-191.0, -335.0)" />
+		<node id="5" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector (1)" position="(286.0, -227.0)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="2" source_node_id="3" sink_node_id="2" source_channel="reduced dark(s)" sink_channel="reduced dark(s)" enabled="true" source_channel_id="reduced_darks" sink_channel_id="reduced_darks" />
+		<link id="3" source_node_id="4" sink_node_id="2" source_channel="reduced flat(s)" sink_channel="reduced flat(s)" enabled="true" source_channel_id="reduced_flats" sink_channel_id="reduced_flats" />
+		<link id="4" source_node_id="2" sink_node_id="5" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+	</links>
+	<annotations>
+		<text id="0" type="text/plain" rect="(-597.0, -79.0, 150.0, 126.0)" font-family="Sans" font-size="16">step2: provide scans for which we need to copy reduced darks and flats</text>
+		<arrow id="1" start="(-522.0, -87.0)" end="(-523.0, -151.0)" fill="#C1272D" />
+		<text id="2" type="text/plain" rect="(-379.0, -87.0, 236.0, 111.0)" font-family="Sans" font-size="16">invalid any existing darks or flats frames (else reduced darks and flats will use them instead of making the copy)</text>
+		<arrow id="3" start="(-293.0, -97.0)" end="(-290.0, -158.0)" fill="#C1272D" />
+		<text id="4" type="text/plain" rect="(-71.0, -96.0, 270.0, 80.0)" font-family="Sans" font-size="16">will copy reduced darks / flats to `dataset_{darks|flats}.hdf5` to be used for reconstruction</text>
+		<arrow id="5" start="(69.99999999999997, -105.0)" end="(69.99999999999997, -156.0)" fill="#C1272D" />
+		<text id="6" type="text/plain" rect="(-390.0, -471.0, 150.0, 107.0)" font-family="Sans" font-size="16">step1: provide scan with already computed darks and flats</text>
+		<arrow id="7" start="(-236.0, -419.0)" end="(-130.0, -428.0)" fill="#C1272D" />
+		<arrow id="8" start="(-277.0, -357.00000000000006)" end="(-228.00000000000003, -333.00000000000006)" fill="#C1272D" />
+		<text id="9" type="text/plain" rect="(241.0, -96.0, 150.0, 88.0)" font-family="Sans" font-size="16">result: scans with copied reduced darks / flats</text>
+		<text id="10" type="text/plain" rect="(-623.0, -603.0, 932.0, 145.0)" font-family="Sans" font-size="16">Context: on this workflow we want to copy reduced flats / darks from a dataset to others.
+This one of the various way to do this.
+</text>
+		<text id="11" type="text/plain" rect="(-593.0, 94.0, 919.0, 84.0)" font-family="Sans" font-size="16">Note: You can also replace the two upper widgets (providing reduced darks and flats) by a python script providing a python dictionnary.
+* Key should be position of the flat / dark in the sequence (so 0 if at the beginning for example)
+* Value is the 2D numpy array with mean / median /xxx of the darks and flats serie</text>
+		<arrow id="12" start="(288.0, -105.0)" end="(286.0, -165.0)" fill="#C1272D" />
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="1" format="pickle">gASVLwEAAAAAAAB9lCiMFV9ld29rc19kZWZhdWx0X2lucHV0c5R9lIwKb3BlcmF0aW9uc5R9lCiM
+G3RvbW9zY2FuLmVzcmYuc2Nhbi5oZGY1c2NhbpSMCEltYWdlS2V5lJOUSwKFlFKUaAdLA4WUUpRo
+B0sBhZRSlGgLdXOMD19ld29rc19leGVjaW5mb5R9lIwOX2V3b2tzX3ZhcmluZm+UfZSMEmNvbnRy
+b2xBcmVhVmlzaWJsZZSIjA5kZWZhdWx0X2lucHV0c5R9lIwTc2F2ZWRXaWRnZXRHZW9tZXRyeZRD
+QgHZ0MsAAwAAAAAH5gAAARgAAAovAAADLQAAB+sAAAE1AAAKKgAAAygAAAABAAAAAAd/AAAH6wAA
+ATUAAAoqAAADKJSMC19fdmVyc2lvbl9flEsBdS4=
+</properties>
+		<properties node_id="2" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x07\x0e\x00\x00\x015\x00\x00\x0b\x08\x00\x00\x03\x10\x00\x00\x07\x13\x00\x00\x01R\x00\x00\x0b\x03\x00\x00\x03\x0b\x00\x00\x00\x01\x00\x00\x00\x00\x07\x7f\x00\x00\x07\x13\x00\x00\x01R\x00\x00\x0b\x03\x00\x00\x03\x0b', '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'_tomo_obj_setting': '', 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="4" format="literal">{'_tomo_obj_setting': '', 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="5" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/copy_reduced_darks_and_flats_meth2.ows

@@ -0,0 +1,48 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="darks and flats copy - method 2" description="">
+	<nodes>
+		<node id="0" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(-519.0, -209.0)" />
+		<node id="1" name="image-key-upgrader" qualified_name="orangecontrib.tomwer.widgets.edit.ImageKeyUpgraderOW.ImageKeyUpgraderOW" project_name="tomwer" version="" title="image-key-upgrader" position="(-293.0, -209.0)" />
+		<node id="2" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(62.0, -212.0)" />
+		<node id="3" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector (1)" position="(291.0, -211.0)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="2" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+	</links>
+	<annotations>
+		<text id="0" type="text/plain" rect="(-597.0, -79.0, 150.0, 126.0)" font-family="Sans" font-size="16">step2: provide scans for which we need to copy reduced darks and flats</text>
+		<arrow id="1" start="(-522.0, -87.0)" end="(-523.0, -151.0)" fill="#C1272D" />
+		<text id="2" type="text/plain" rect="(-379.0, -87.0, 236.0, 111.0)" font-family="Sans" font-size="16">invalid any existing darks or flats frames (else reduced darks and flats will use them instead of making the copy)</text>
+		<arrow id="3" start="(-293.0, -97.0)" end="(-290.0, -158.0)" fill="#C1272D" />
+		<text id="4" type="text/plain" rect="(-70.0, -81.0, 270.0, 80.0)" font-family="Sans" font-size="16">will copy reduced darks / flats to `dataset_{darks|flats}.hdf5` to be used for reconstruction</text>
+		<arrow id="5" start="(61.99999999999998, -91.0)" end="(61.99999999999998, -142.0)" fill="#C1272D" />
+		<text id="6" type="text/plain" rect="(-141.0, -427.0, 464.0, 85.0)" font-family="Sans" font-size="16">step1: provide reduced darks and flats from the 'copy' tab,
+unselecting auto and setting them through `select darks url` and `select flats url`</text>
+		<arrow id="7" start="(57.0, -334.0)" end="(58.99999999999997, -259.00000000000006)" fill="#C1272D" />
+		<text id="8" type="text/plain" rect="(241.0, -94.0, 150.0, 88.0)" font-family="Sans" font-size="16">result: scans with copied reduced darks / flats</text>
+		<text id="9" type="text/plain" rect="(-601.0, -590.0, 932.0, 68.0)" font-family="Sans" font-size="16">Context: on this workflow we want to copy reduced flats / darks from a dataset to others.
+This one of the various way to do this.
+</text>
+		<text id="10" type="text/plain" rect="(-593.0, 94.0, 919.0, 84.0)" font-family="Sans" font-size="16">Note: reduced darks / flats can be saved to disk from another python script using the `silx.io.dictdump` dicttoh5 function.
+Reduced darks and flats are dictionary with index in the sequence as key (so index==0 if the dark / flat serie is done at the beginning) and the reduced darks / flats as value (2D numpy array) </text>
+		<arrow id="11" start="(291.0, -109.0)" end="(290.0, -158.0)" fill="#C1272D" />
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="1" format="pickle">gASVLwEAAAAAAAB9lCiMFV9ld29rc19kZWZhdWx0X2lucHV0c5R9lIwKb3BlcmF0aW9uc5R9lCiM
+G3RvbW9zY2FuLmVzcmYuc2Nhbi5oZGY1c2NhbpSMCEltYWdlS2V5lJOUSwKFlFKUaAdLA4WUUpRo
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+ATUAAAoqAAADKJSMC19fdmVyc2lvbl9flEsBdS4=
+</properties>
+		<properties node_id="2" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': {'DOWHEN': 'before', 'DARKCAL': 'mean', 'DARKOVE': 0, 'DARKRMV': 0, 'DKFILE': 'darkend[0-9]{3,4}', 'REFSCAL': 'median', 'REFSOVE': 0, 'REFSRMV': 0, 'RFFILE': 'ref*.*[0-9]{3,4}_[0-9]{3,4}'}}, 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x06\x9b\x00\x00\x02K\x00\x00\n\x95\x00\x00\x04\x8f\x00\x00\x06\xa0\x00\x00\x02h\x00\x00\n\x90\x00\x00\x04\x8a\x00\x00\x00\x01\x00\x00\x00\x00\x07\x7f\x00\x00\x06\xa0\x00\x00\x02h\x00\x00\n\x90\x00\x00\x04\x8a', '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/default_cor_search.ows

@@ -0,0 +1,40 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="default cor search" description="">
+	<nodes>
+		<node id="0" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(150, 150)" />
+		<node id="1" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(319.0, 189.0)" />
+		<node id="2" name="default center of rotation" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(469.0, 237.0)" />
+		<node id="3" name="nabu slice reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuOW.NabuOW" project_name="tomwer" version="" title="nabu slice reconstruction" position="(659.0, 325.0)" />
+		<node id="4" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer" position="(818.0, 362.0)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="2" source_node_id="3" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="3" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+	</links>
+	<annotations>
+		<text id="0" type="text/plain" rect="(223.0, 32.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">provide dataset</text>
+		<arrow id="1" start="(210.0, 73.0)" end="(159.0, 116.0)" fill="#C1272D" />
+		<text id="2" type="text/plain" rect="(157.0, 304.0, 150.0, 49.0)" font-family="Ubuntu" font-size="16">compute reduced darks and flats</text>
+		<arrow id="3" start="(232.0, 299.0)" end="(290.0, 249.0)" fill="#C1272D" />
+		<arrow id="4" start="(550.0, 149.0)" end="(484.0, 201.0)" fill="#C1272D" />
+		<text id="5" type="text/plain" rect="(552.0, 76.0, 281.0, 72.0)" font-family="Ubuntu" font-size="16">compute center of rotation
+manually or using one of the numerous existing algorithms</text>
+		<arrow id="6" start="(754.0, 224.00000000000003)" end="(695.0, 277.0)" fill="#C1272D" />
+		<text id="7" type="text/plain" rect="(783.0, 183.0, 150.0, 50.0)" font-family="Ubuntu" font-size="16">reconstruct one or several slices</text>
+		<arrow id="8" start="(739.0, 486.0)" end="(782.0, 429.0)" fill="#C1272D" />
+		<text id="9" type="text/plain" rect="(709.2222222222222, 488.55555555555554, 150.0, 88.0)" font-family="Ubuntu" font-size="16">browse reconstructed slices and browse dataset</text>
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="1" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="2" format="literal">{'_ewoks_default_inputs': {'data': None, 'axis_params': {'MODE': 'manual', 'POSITION_VALUE': None, 'CALC_INPUT_TYPE': 'transmission_nopag', 'ANGLE_MODE': '0-180', 'USE_SINOGRAM': False, 'SINOGRAM_LINE': '', 'SINOGRAM_SUBSAMPLING': 10, 'AXIS_URL_1': '', 'AXIS_URL_2': '', 'LOOK_AT_STDMAX': False, 'NEAR_WX': 5, 'FINE_STEP_X': 0.1, 'SCALE_IMG2_TO_IMG1': False, 'NEAR_POSITION': 0.0, 'PADDING_MODE': 'edge', 'FLIP_LR': True, 'COMPOSITE_OPTS': {'theta': 10, 'n_subsampling_y': 10, 'oversampling': 4, 'take_log': True, 'near_pos': 0, 'near_width': 20}, 'SIDE': 'all', 'COR_OPTIONS': ''}, 'gui': {'mode_is_lock': False, 'value_is_lock': False, 'auto_update_estimated_cor': True}}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="4" format="literal">{'_viewer_config': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/hello_world_python_script.ows

@@ -0,0 +1,50 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="Python script hello world" description="">
+	<nodes>
+		<node id="0" name="single tomo obj" qualified_name="orangecontrib.tomwer.widgets.control.SingleTomoObjOW.SingleTomoObjOW" project_name="tomwer" version="" title="single tomo obj" position="(215.0, 171.0)" />
+		<node id="1" name="Python Script" qualified_name="orangecontrib.tomwer.widgets.other.PythonScriptOW.OWPythonScript" project_name="tomwer" version="" title="Python Script" position="(395.0, 238.0)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="tomo_obj" sink_channel="data" enabled="true" source_channel_id="tomo_obj" sink_channel_id="data" />
+	</links>
+	<annotations>
+		<arrow id="0" start="(155.0, 343.0)" end="(199.0, 238.0)" fill="#C1272D" />
+		<text id="1" type="text/plain" rect="(22.0, 370.0, 211.0, 103.0)" font-family="Cantarell" font-size="16">1: provide a scan either by:
+* using the 'select button'
+* copy-paste a file containing a NXtomo to the interface</text>
+		<arrow id="2" start="(369.0, 406.0)" end="(374.0, 308.0)" fill="#C1272D" />
+		<text id="3" type="text/plain" rect="(329.0, 414.0, 150.0, 70.0)" font-family="Cantarell" font-size="16">2: print some information about this scan</text>
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_tomo_obj_setting': '', 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\x08C\x00\x00\x02=\x00\x00\r\xb3\x00\x00\x02\xd8\x00\x00\x08C\x00\x00\x02b\x00\x00\r\xb3\x00\x00\x02\xd8\x00\x00\x00\x01\x00\x00\x00\x00\x07\x80\x00\x00\x08C\x00\x00\x02b\x00\x00\r\xb3\x00\x00\x02\xd8', '__version__': 1}</properties>
+		<properties node_id="1" format="pickle">gASVKQUAAAAAAAB9lCiMEmNvbnRyb2xBcmVhVmlzaWJsZZSIjBJjdXJyZW50U2NyaXB0SW5kZXiU
+SwCMEWxpYnJhcnlMaXN0U291cmNllF2UjDFvcmFuZ2Vjb250cmliLnRvbXdlci53aWRnZXRzLm90
+aGVyLlB5dGhvblNjcmlwdE9XlIwGU2NyaXB0lJOUKYGUfZQojARuYW1llIwLSGVsbG8gd29ybGSU
+jAZzY3JpcHSUWOgBAABmcm9tIHRvbXdlci5jb3JlLnNjYW4uaGRmNXNjYW4gaW1wb3J0IEhERjVU
+b21vU2Nhbgpmcm9tIHRvbXdlci5jb3JlLnNjYW4uZWRmc2NhbiBpbXBvcnQgRURGVG9tb1NjYW4K
+c2NhbiA9IGluX2RhdGEKaWYgaXNpbnN0YW5jZShzY2FuLCBIREY1VG9tb1NjYW4pOgogICAgcHJp
+bnQoInNjYW4gbWFzdGVyIGZpbGUgaXMiLCBzY2FuLm1hc3Rlcl9maWxlKQplbHNlOgogICAgcHJp
+bnQoInNjYW4gZGlyZWN0b3J5IGlzIiwgc2Nhbi5wYXRoKQoKcHJpbnQoZiJzY2FuIGhhcyB7bGVu
+KHNjYW4ucHJvamVjdGlvbnMpfSBwcm9qZWN0aW9ucywge2xlbihzY2FuLmRhcmtzKX0gZGFya3Mg
+YW5kIHtsZW4oc2Nhbi5mbGF0cyl9IGZsYXRzIikKCnByaW50KGYic2NhbiBlbmVyZ3kgaXMge3Nj
+YW4uZW5lcmd5fSwgcm90YXRpb24gYW5nbGUgZ29lcyBmcm9tIHttaW4oc2Nhbi5yb3RhdGlvbl9h
+bmdsZSl9IHRvIHttYXgoc2Nhbi5yb3RhdGlvbl9hbmdsZSl9IGRlZ3JlZXMiKZSMBWZsYWdzlEsA
+jAhmaWxlbmFtZZROdWJhjBNzYXZlZFdpZGdldEdlb21ldHJ5lENCAdnQywADAAAAAAhKAAAA0wAA
+DWYAAARRAAAISgAAAPgAAA1mAAAEUQAAAAEAAAAAB4AAAAhKAAAA+AAADWYAAARRlIwKc2NyaXB0
+VGV4dJRY6AEAAGZyb20gdG9td2VyLmNvcmUuc2Nhbi5oZGY1c2NhbiBpbXBvcnQgSERGNVRvbW9T
+Y2FuCmZyb20gdG9td2VyLmNvcmUuc2Nhbi5lZGZzY2FuIGltcG9ydCBFREZUb21vU2NhbgpzY2Fu
+ID0gaW5fZGF0YQppZiBpc2luc3RhbmNlKHNjYW4sIEhERjVUb21vU2Nhbik6CiAgICBwcmludCgi
+c2NhbiBtYXN0ZXIgZmlsZSBpcyIsIHNjYW4ubWFzdGVyX2ZpbGUpCmVsc2U6CiAgICBwcmludCgi
+c2NhbiBkaXJlY3RvcnkgaXMiLCBzY2FuLnBhdGgpCgpwcmludChmInNjYW4gaGFzIHtsZW4oc2Nh
+bi5wcm9qZWN0aW9ucyl9IHByb2plY3Rpb25zLCB7bGVuKHNjYW4uZGFya3MpfSBkYXJrcyBhbmQg
+e2xlbihzY2FuLmZsYXRzKX0gZmxhdHMiKQoKcHJpbnQoZiJzY2FuIGVuZXJneSBpcyB7c2Nhbi5l
+bmVyZ3l9LCByb3RhdGlvbiBhbmdsZSBnb2VzIGZyb20ge21pbihzY2FuLnJvdGF0aW9uX2FuZ2xl
+KX0gdG8ge21heChzY2FuLnJvdGF0aW9uX2FuZ2xlKX0gZGVncmVlcyIplIwNc3BsaXR0ZXJTdGF0
+ZZROjAtfX3ZlcnNpb25fX5RLAXUu
+</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/simple_slice_reconstruction_on_slurm.ows

@@ -0,0 +1,50 @@
+<?xml version='1.0' encoding='utf-8'?>
+<scheme version="2.0" title="simple slice reconstruction on slurm" description="">
+	<nodes>
+		<node id="0" name="scan selector" qualified_name="orangecontrib.tomwer.widgets.control.DataSelectorOW.DataSelectorOW" project_name="tomwer" version="" title="scan selector" position="(150, 150)" />
+		<node id="1" name="reduced darks and flats" qualified_name="orangecontrib.tomwer.widgets.reconstruction.DarkRefAndCopyOW.DarkRefAndCopyOW" project_name="tomwer" version="" title="reduced darks and flats" position="(324.0, 183.0)" />
+		<node id="2" name="default center of rotation" qualified_name="orangecontrib.tomwer.widgets.reconstruction.AxisOW.AxisOW" project_name="tomwer" version="" title="default center of rotation" position="(490.0, 218.0)" />
+		<node id="3" name="nabu slice reconstruction" qualified_name="orangecontrib.tomwer.widgets.reconstruction.NabuOW.NabuOW" project_name="tomwer" version="" title="nabu slice reconstruction" position="(649.0, 261.0)" />
+		<node id="4" name="data viewer" qualified_name="orangecontrib.tomwer.widgets.visualization.DataViewerOW.DataViewerOW" project_name="tomwer" version="" title="data viewer" position="(945.0, 368.0)" />
+		<node id="5" name="slurm cluster" qualified_name="orangecontrib.tomwer.widgets.cluster.SlurmClusterOW.SlurmClusterOW" project_name="tomwer" version="" title="slurm cluster" position="(412.0, 387.0)" />
+		<node id="6" name="future supervisor" qualified_name="orangecontrib.tomwer.widgets.cluster.FutureSupervisorOW.FutureSupervisorOW" project_name="tomwer" version="" title="future supervisor" position="(803.5, 315.5)" />
+	</nodes>
+	<links>
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="2" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="3" source_node_id="5" sink_node_id="3" source_channel="cluster_config" sink_channel="cluster_config" enabled="true" source_channel_id="data_out" sink_channel_id="cluster_in" />
+		<link id="4" source_node_id="3" sink_node_id="6" source_channel="future_tomo_obj" sink_channel="future_tomo_obj" enabled="true" source_channel_id="future_out" sink_channel_id="future_in" />
+		<link id="5" source_node_id="6" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+	</links>
+	<annotations>
+		<arrow id="0" start="(267.0, 56.0)" end="(194.0, 105.0)" fill="#C1272D" />
+		<arrow id="1" start="(248.0, 298.0)" end="(292.0, 239.0)" fill="#C1272D" />
+		<arrow id="2" start="(576.0, 108.0)" end="(521.0, 168.0)" fill="#C1272D" />
+		<arrow id="3" start="(647.0, 420.0)" end="(649.0, 328.0)" fill="#C1272D" />
+		<arrow id="4" start="(1013.0, 272.0)" end="(951.0, 322.0)" fill="#C1272D" />
+		<text id="5" type="text/plain" rect="(275.0, 19.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">provide dataset</text>
+		<text id="6" type="text/plain" rect="(187.0, 309.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute reduced darks and flats</text>
+		<text id="7" type="text/plain" rect="(596.0, 53.0, 150.0, 26.0)" font-family="Ubuntu" font-size="16">compute center of rotation</text>
+		<text id="8" type="text/plain" rect="(557.0, 428.0, 214.0, 94.0)" font-family="Ubuntu" font-size="16">slice reconstruction will be done on slurm as it has a 'slurm cluster' input</text>
+		<text id="9" type="text/plain" rect="(979.4444444444443, 459.11111111111114, 150.0, 88.0)" font-family="Ubuntu" font-size="16">display reconstructed slices and browse dataset</text>
+		<arrow id="10" start="(256.0, 528.0)" end="(341.0, 433.0)" fill="#C1272D" />
+		<text id="11" type="text/plain" rect="(126.0, 534.0, 267.0, 77.0)" font-family="Cantarell" font-size="16">Define the slurm partition to be used for the reconstruction.
+Warning: you must ask for one GPU</text>
+		<arrow id="12" start="(854.0, 176.0)" end="(817.0, 273.0)" fill="#C1272D" />
+		<text id="13" type="text/plain" rect="(859.0, 112.0, 219.0, 50.0)" font-family="Cantarell" font-size="16">wait for reconstruction to be done over slurm</text>
+	</annotations>
+	<thumbnail />
+	<node_properties>
+		<properties node_id="0" format="literal">{'_scanIDs': [], 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="1" format="literal">{'_ewoks_default_inputs': {'data': None, 'dark_ref_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="2" format="literal">{'_ewoks_default_inputs': {'data': None, 'axis_params': {'MODE': 'manual', 'POSITION_VALUE': None, 'CALC_INPUT_TYPE': 'transmission_nopag', 'ANGLE_MODE': '0-180', 'USE_SINOGRAM': False, 'SINOGRAM_LINE': '', 'SINOGRAM_SUBSAMPLING': 10, 'AXIS_URL_1': '', 'AXIS_URL_2': '', 'LOOK_AT_STDMAX': False, 'NEAR_WX': 5, 'FINE_STEP_X': 0.1, 'SCALE_IMG2_TO_IMG1': False, 'NEAR_POSITION': 0.0, 'PADDING_MODE': 'edge', 'FLIP_LR': True, 'COMPOSITE_OPTS': {'theta': 10, 'n_subsampling_y': 10, 'oversampling': 4, 'take_log': True, 'near_pos': 0, 'near_width': 20}, 'SIDE': 'all', 'COR_OPTIONS': ''}, 'gui': {'mode_is_lock': False, 'value_is_lock': False, 'auto_update_estimated_cor': True}}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="3" format="literal">{'_ewoks_default_inputs': {'data': None, 'nabu_params': None}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="4" format="literal">{'_viewer_config': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+		<properties node_id="5" format="literal">{'_ewoks_default_inputs': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': b'\x01\xd9\xd0\xcb\x00\x03\x00\x00\x00\x00\nH\x00\x00\x01l\x00\x00\x0c#\x00\x00\x02\xce\x00\x00\nH\x00\x00\x01\x91\x00\x00\x0c#\x00\x00\x02\xce\x00\x00\x00\x01\x00\x00\x00\x00\x07\x80\x00\x00\nH\x00\x00\x01\x91\x00\x00\x0c#\x00\x00\x02\xce', '__version__': 1}</properties>
+		<properties node_id="6" format="literal">{'_ewoks_default_inputs': {}, 'controlAreaVisible': True, 'savedWidgetGeometry': None, '__version__': 1}</properties>
+	</node_properties>
+	<session_state>
+		<window_groups />
+	</session_state>
+</scheme>

orangecontrib/tomwer/tutorials/simple_volume_to_slurm_reconstruction.ows

@@ -12,14 +12,14 @@
 		<node id="8" name="future supervisor" qualified_name="orangecontrib.tomwer.widgets.cluster.FutureSupervisorOW.FutureSupervisorOW" project_name="tomwer" version="" title="future supervisor" position="(988.0, 497.75)" />
 	</nodes>
 	<links>
-		<link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" />
-		<link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" />
-		<link id="2" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" />
-		<link id="3" source_node_id="3" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" />
-		<link id="4" source_node_id="3" sink_node_id="5" source_channel="data" sink_channel="data" enabled="true" />
-		<link id="5" source_node_id="7" sink_node_id="5" source_channel="cluster_config" sink_channel="cluster_config" enabled="true" />
-		<link id="6" source_node_id="5" sink_node_id="8" source_channel="future_tomo_obj" sink_channel="future_tomo_obj" enabled="true" />
-		<link id="7" source_node_id="8" sink_node_id="6" source_channel="volume" sink_channel="volume" enabled="true" />
+		<link id="0" source_node_id="0" sink_node_id="1" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="1" source_node_id="1" sink_node_id="2" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="2" source_node_id="2" sink_node_id="3" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="3" source_node_id="3" sink_node_id="4" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="4" source_node_id="3" sink_node_id="5" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
+		<link id="5" source_node_id="7" sink_node_id="5" source_channel="cluster_config" sink_channel="cluster_config" enabled="true" source_channel_id="data_out" sink_channel_id="cluster_in" />
+		<link id="6" source_node_id="5" sink_node_id="8" source_channel="future_tomo_obj" sink_channel="future_tomo_obj" enabled="true" source_channel_id="future_out" sink_channel_id="future_in" />
+		<link id="7" source_node_id="8" sink_node_id="6" source_channel="data" sink_channel="data" enabled="true" source_channel_id="data" sink_channel_id="data" />
 	</links>
 	<annotations>
 		<arrow id="0" start="(267.0, 56.0)" end="(194.0, 105.0)" fill="#C1272D" />

orangecontrib/tomwer/widgets/__init__.py

@@ -40,7 +40,7 @@ def widget_discovery(discovery):
         "orangecontrib.tomwer.widgets.debugtools",
         "orangecontrib.tomwer.widgets.edit",
         "orangecontrib.tomwer.widgets.reconstruction",
-        "orangecontrib.tomwer.widgets.stitching",
+        # "orangecontrib.tomwer.widgets.stitching",
         "orangecontrib.tomwer.widgets.visualization",
         "orangecontrib.tomwer.widgets.other",
     ]

orangecontrib/tomwer/widgets/cluster/FutureSupervisorOW.py

@@ -72,7 +72,6 @@ class FutureSupervisorOW(OWBaseWidget, openclass=True):
     want_main_area = True
     want_control_area = False
     resizing_enabled = True
-    compress_signal = False
 
     _ewoks_default_inputs = Setting(dict())
 

orangecontrib/tomwer/widgets/cluster/SlurmClusterOW.py

@@ -29,13 +29,15 @@ __date__ = "13/10/2021"
 
 import logging
 
+from silx.gui import qt
+
 from orangewidget import gui
 from orangewidget.settings import Setting
 from orangewidget.widget import Output, OWBaseWidget
 
 import tomwer.core.process.cluster.supervisor
 from tomwer.core.cluster import SlurmClusterConfiguration
-from tomwer.gui.cluster.slurm import SlurmSettingsWidget
+from tomwer.gui.cluster.slurm import SlurmSettingsWindow
 
 _logger = logging.getLogger(__name__)
 
@@ -56,26 +58,26 @@ class SlurmClusterOW(OWBaseWidget, openclass=True):
     want_main_area = True
     want_control_area = False
     resizing_enabled = True
-    compress_signal = False
 
     _ewoks_default_inputs = Setting(dict())
 
     ewokstaskclass = tomwer.core.process.cluster.supervisor._SupervisorPlaceHolder
 
     class Outputs:
-        data_out = Output(name="cluster_config", type=SlurmClusterConfiguration)
+        config_out = Output(name="cluster_config", type=SlurmClusterConfiguration)
 
     def __init__(self, parent=None) -> None:
         super().__init__(parent)
         layout = gui.vBox(self.mainArea, self.name).layout()
-        self._widget = SlurmSettingsWidget(parent=self)
+        self._widget = SlurmSettingsWindow(parent=self)
+        self._widget.setWindowFlags(qt.Qt.Widget)
         layout.addWidget(self._widget)
 
         if self._ewoks_default_inputs != {}:
             self._widget.setConfiguration(self._ewoks_default_inputs)
 
         # trigger the signal to avoid any user request
-        self.Outputs.data_out.send(self.getConfiguration())
+        self.Outputs.config_out.send(self.getConfiguration())
 
         # connect signal / slot
         self._widget.sigConfigChanged.connect(self._configurationChanged)
@@ -92,7 +94,7 @@ class SlurmClusterOW(OWBaseWidget, openclass=True):
 
     def _configurationChanged(self):
         slurmClusterconfiguration = self.getConfiguration()
-        self.Outputs.data_out.send(slurmClusterconfiguration)
+        self.Outputs.config_out.send(slurmClusterconfiguration)
         self._ewoks_default_inputs = slurmClusterconfiguration.to_dict()
 
     def getConfiguration(self):

orangecontrib/tomwer/widgets/control/AdvancementOW.py

@@ -54,7 +54,6 @@ class AdvancementOW(widget.OWBaseWidget, openclass=True):
     want_main_area = True
     want_control_area = False
     resizing_enabled = True
-    compress_signal = False
 
     def __init__(self, parent=None):
         widget.OWBaseWidget.__init__(self, parent)

orangecontrib/tomwer/widgets/control/DataDiscoveryOW.py

@@ -48,15 +48,11 @@ class DataDiscoveryOW(widget.OWBaseWidget, WidgetLongProcessing, openclass=True)
         "NXtomo",
     ]
 
-    compress_signal = False
-
     want_main_area = True
     want_control_area = False
     resizing_enabled = True
 
-    ewoksorangeclass = (
-        tomwer.core.process.control.datadiscovery._DataDiscoveryPlaceHolder
-    )
+    ewokstaskclass = tomwer.core.process.control.datadiscovery._DataDiscoveryPlaceHolder
 
     class Outputs:
         data = Output(name="data", type=TomwerScanBase, doc="one scan to be process")
@@ -94,7 +90,6 @@ class DataDiscoveryOW(widget.OWBaseWidget, WidgetLongProcessing, openclass=True)
         )
 
     def _updatesettings(self):
-        print("update settings")
         self.settings = self.getConfiguration()
 
     # expose some API

orangecontrib/tomwer/widgets/control/DataListOW.py

@@ -53,7 +53,6 @@ class DataListOW(OWBaseWidget, openclass=True):
     want_main_area = True
     want_control_area = False
     resizing_enabled = True
-    compress_signal = False
 
     _scanIDs = Setting(list())
 

orangecontrib/tomwer/widgets/control/DataListenerOW.py

@@ -90,14 +90,11 @@ class DataListenerOW(
         "NXtomo",
     ]
 
-    allows_cycle = True
-    compress_signal = False
-
     want_main_area = True
     want_control_area = False
     resizing_enabled = True
 
-    ewoksorangeclass = (
+    ewokstaskclass = (
         tomwer.core.process.control.datalistener.datalistener._DataListenerTaskPlaceHolder
     )
 
@@ -141,6 +138,9 @@ class DataListenerOW(
         # set up
         self._loadSettings()
 
+        # for conveniance start the listener when create it.
+        self.activate(True)
+
     def _loadSettings(self):
         if "bliss_server_configuration" in self._static_input:  # pylint: disable=E1135
             bliss_configuration = self._static_input[  # pylint: disable=E1136

orangecontrib/tomwer/widgets/control/DataSelectorOW.py

@@ -58,7 +58,6 @@ class DataSelectorOW(OWBaseWidget, openclass=True):
     want_main_area = True
     want_control_area = False
     resizing_enabled = True
-    compress_signal = False
 
     _scanIDs = Setting(list())
 

orangecontrib/tomwer/widgets/control/DataTransfertOW.py

@@ -38,7 +38,7 @@ from silx.gui import qt
 import tomwer.core.process.control.scantransfer
 from orangecontrib.tomwer.orange.managedprocess import SuperviseOW
 from orangecontrib.tomwer.orange.settings import CallbackSettingsHandler
-from tomwer.core.process.control.scantransfer import ScanTransfer
+from tomwer.core.process.control.scantransfer import ScanTransferTask
 from tomwer.core.scan.scanbase import TomwerScanBase
 from tomwer.gui.control.datatransfert import DataTransfertSelector
 from tomwer.utils import docstring
@@ -70,13 +70,12 @@ class DataTransfertOW(SuperviseOW):
         "folder",
     ]
 
-    ewokstaskclass = tomwer.core.process.control.scantransfer.ScanTransfer
+    ewokstaskclass = tomwer.core.process.control.scantransfer.ScanTransferTask
 
     settingsHandler = CallbackSettingsHandler()
 
     want_main_area = True
     resizing_enabled = True
-    compress_signal = False
 
     dest_dir_settings = settings.Setting(str())
     """Parameters directly editabled from the TOFU interface"""
@@ -100,7 +99,7 @@ class DataTransfertOW(SuperviseOW):
         self._widget = DataTransfertSelector(
             parent=self,
             rnice_option=True,
-            default_root_folder=ScanTransfer.getDefaultOutputDir(),
+            default_root_folder=ScanTransferTask.getDefaultOutputDir(),
         )
         self._layout = gui.vBox(self.mainArea, self.name).layout()
         self._layout.addWidget(self._widget)
@@ -152,10 +151,11 @@ class DataTransfertOW(SuperviseOW):
         inputs = {
             "data": data,
             "move": move,
-            "force": force,
+            "overwrite": force,
             "noRsync": noRsync,
             "dest_dir": self._destDir,
             "block": self._forceSync,
+            "serialize_output_data": False,
         }
         thread = ThreadDataTransfer(
             inputs=inputs,
@@ -163,7 +163,7 @@ class DataTransfertOW(SuperviseOW):
             process=self,
         )
         try:
-            process = ScanTransfer(inputs=inputs)
+            process = ScanTransferTask(inputs=inputs)
         except Exception as e:
             logger.error(e)
         else:
@@ -204,7 +204,7 @@ class ThreadDataTransfer(qt.QThread):
 
     def run(self):
         try:
-            process = ScanTransfer(inputs=self._inputs)
+            process = ScanTransferTask(inputs=self._inputs)
             process.run()
         except Exception as e:
             logger.error(f"data transfer failed. Reason is {e}")

orangecontrib/tomwer/widgets/control/DataValidatorOW.py

@@ -63,7 +63,6 @@ class DataValidatorOW(SuperviseOW):
 
     want_main_area = True
     resizing_enabled = True
-    compress_signal = False
 
     ewokstaskclass = tomwer.core.process.control.scanvalidator._ScanValidatorPlaceHolder
 

orangecontrib/tomwer/widgets/control/DataWatcherOW.py

@@ -63,9 +63,6 @@ class DataWatcherOW(widget.OWBaseWidget, WidgetLongProcessing, openclass=True):
     priority = 12
     keywords = ["tomography", "file", "tomwer", "observer", "datawatcher"]
 
-    allows_cycle = True
-    compress_signal = False
-
     want_main_area = True
     want_control_area = False
     resizing_enabled = True