supervisely 6.73.417__py3-none-any.whl → 6.73.419__py3-none-any.whl

supervisely/nn/tracker/bot_sort/matching.py

@@ -1,127 +0,0 @@
-import lap  # pylint: disable=import-error
-import numpy as np
-from cython_bbox import bbox_overlaps as bbox_ious  # pylint: disable=import-error
-from scipy.spatial.distance import cdist
-
-from supervisely.nn.tracker.utils import kalman_filter
-
-
-def linear_assignment(cost_matrix, thresh):
-    if cost_matrix.size == 0:
-        return (
-            np.empty((0, 2), dtype=int),
-            tuple(range(cost_matrix.shape[0])),
-            tuple(range(cost_matrix.shape[1])),
-        )
-    matches, unmatched_a, unmatched_b = [], [], []
-    cost, x, y = lap.lapjv(cost_matrix, extend_cost=True, cost_limit=thresh)
-    for ix, mx in enumerate(x):
-        if mx >= 0:
-            matches.append([ix, mx])
-    unmatched_a = np.where(x < 0)[0]
-    unmatched_b = np.where(y < 0)[0]
-    matches = np.asarray(matches)
-    return matches, unmatched_a, unmatched_b
-
-
-def ious(atlbrs, btlbrs):
-    """
-    Compute cost based on IoU
-    :type atlbrs: list[tlbr] | np.ndarray
-    :type atlbrs: list[tlbr] | np.ndarray
-
-    :rtype ious np.ndarray
-    """
-    ious = np.zeros((len(atlbrs), len(btlbrs)), dtype=float)
-    if ious.size == 0:
-        return ious
-
-    ious = bbox_ious(
-        np.ascontiguousarray(atlbrs, dtype=float), np.ascontiguousarray(btlbrs, dtype=float)
-    )
-
-    return ious
-
-
-def iou_distance(atracks, btracks):
-    """
-    Compute cost based on IoU
-    :type atracks: list[STrack]
-    :type btracks: list[STrack]
-
-    :rtype cost_matrix np.ndarray
-    """
-
-    if (len(atracks) > 0 and isinstance(atracks[0], np.ndarray)) or (
-        len(btracks) > 0 and isinstance(btracks[0], np.ndarray)
-    ):
-        atlbrs = atracks
-        btlbrs = btracks
-    else:
-        atlbrs = [track.tlbr for track in atracks]
-        btlbrs = [track.tlbr for track in btracks]
-    _ious = ious(atlbrs, btlbrs)
-    cost_matrix = 1 - _ious
-
-    return cost_matrix
-
-
-def embedding_distance(tracks, detections, metric="cosine"):
-    """
-    :param tracks: list[STrack]
-    :param detections: list[BaseTrack]
-    :param metric:
-    :return: cost_matrix np.ndarray
-    """
-
-    cost_matrix = np.zeros((len(tracks), len(detections)), dtype=float)
-    if cost_matrix.size == 0:
-        return cost_matrix
-    det_features = np.asarray([track.curr_feat for track in detections], dtype=float)
-    track_features = np.asarray([track.smooth_feat for track in tracks], dtype=float)
-
-    cost_matrix = np.maximum(
-        0.0, cdist(track_features, det_features, metric)
-    )  # / 2.0  # Nomalized features
-    return cost_matrix
-
-
-def fuse_motion(kf, cost_matrix, tracks, detections, only_position=False, lambda_=0.98):
-    if cost_matrix.size == 0:
-        return cost_matrix
-    gating_dim = 2 if only_position else 4
-    gating_threshold = kalman_filter.chi2inv95[gating_dim]
-    # measurements = np.asarray([det.to_xyah() for det in detections])
-    measurements = np.asarray([det.to_xywh() for det in detections])
-    for row, track in enumerate(tracks):
-        gating_distance = kf.gating_distance(
-            track.mean, track.covariance, measurements, only_position, metric="maha"
-        )
-        cost_matrix[row, gating_distance > gating_threshold] = np.inf
-        cost_matrix[row] = lambda_ * cost_matrix[row] + (1 - lambda_) * gating_distance
-    return cost_matrix
-
-
-def fuse_iou(cost_matrix, tracks, detections):
-    if cost_matrix.size == 0:
-        return cost_matrix
-    reid_sim = 1 - cost_matrix
-    iou_dist = iou_distance(tracks, detections)
-    iou_sim = 1 - iou_dist
-    fuse_sim = reid_sim * (1 + iou_sim) / 2
-    det_scores = np.array([det.score for det in detections])
-    det_scores = np.expand_dims(det_scores, axis=0).repeat(cost_matrix.shape[0], axis=0)
-    # fuse_sim = fuse_sim * (1 + det_scores) / 2
-    fuse_cost = 1 - fuse_sim
-    return fuse_cost
-
-
-def fuse_score(cost_matrix, detections):
-    if cost_matrix.size == 0:
-        return cost_matrix
-    iou_sim = 1 - cost_matrix
-    det_scores = np.array([det.score for det in detections])
-    det_scores = np.expand_dims(det_scores, axis=0).repeat(cost_matrix.shape[0], axis=0)
-    fuse_sim = iou_sim * det_scores
-    fuse_cost = 1 - fuse_sim
-    return fuse_cost

supervisely/nn/tracker/bot_sort/sly_tracker.py

@@ -1,401 +0,0 @@
-from __future__ import annotations
-
-from pathlib import Path
-from typing import Dict, List, Tuple, Union
-
-import numpy as np
-import requests
-
-from supervisely import Annotation, Label
-from supervisely.nn.tracker.tracker import BaseDetection as Detection
-from supervisely.nn.tracker.tracker import BaseTrack, BaseTracker
-from supervisely.sly_logger import logger
-
-from . import matching
-from .bot_sort import (
-    BoTSORT,
-    STrack,
-    TrackState,
-    joint_stracks,
-    remove_duplicate_stracks,
-    sub_stracks,
-)
-
-
-class Track(BaseTrack, STrack):
-    def __init__(self, tlwh, confidence: float, feature=None, sly_label: Label = None):
-        self.track_id = None
-        STrack.__init__(self, tlwh, confidence, sly_label.obj_class.name, feature)
-        self.sly_label = sly_label
-
-    def get_sly_label(self):
-        return self.sly_label
-
-    def update(self, new: Track, frame_id):
-        STrack.update(self, new, frame_id)
-        self.sly_label = new.get_sly_label()
-
-    def re_activate(self, new: Track, frame_id, new_id=False):
-        STrack.re_activate(self, new, frame_id, new_id)
-        self.sly_label = new.get_sly_label()
-
-
-class _BoTSORT(BoTSORT):
-    def __init__(self, args):
-        super().__init__(args)
-
-        # for type hinting
-        self.tracked_stracks = []  # type: list[Track]
-        self.lost_stracks = []  # type: list[Track]
-        self.removed_stracks = []  # type: list[Track]
-
-        # for pylint
-        self.frame_id = 0
-
-    def _init_track(
-        self, dets: np.ndarray, scores: np.ndarray, labels: List[Label], features: np.ndarray
-    ):
-        if len(dets) == 0:
-            return []
-        if self.args.with_reid:
-            return [
-                Track(Track.tlbr_to_tlwh(tlbr), s, f, l)
-                for (tlbr, s, f, l) in zip(dets, scores, features, labels)
-            ]
-        return [
-            Track(Track.tlbr_to_tlwh(tlbr), s, None, l)
-            for (tlbr, s, l) in zip(dets, scores, labels)
-        ]
-
-    def get_dists(self, tracks: List[Track], detections: List[Track]):
-        # Associate with high score detection boxes
-        ious_dists = matching.iou_distance(tracks, detections)
-
-        # if not self.args.mot20:
-        ious_dists = matching.fuse_score(ious_dists, detections)
-
-        # Remove detections with different shapes
-        for track_i, track in enumerate(tracks):
-            for det_i, det in enumerate(detections):
-                if track.get_sly_label().geometry.name() != det.get_sly_label().geometry.name():
-                    ious_dists[track_i, det_i] = 1.0
-
-        if not self.args.with_reid:
-            return ious_dists
-
-        ious_dists_mask = ious_dists > self.args.proximity_thresh
-        emb_dists = matching.embedding_distance(tracks, detections) / 2.0
-        # raw_emb_dists = emb_dists.copy()
-        emb_dists[emb_dists > self.args.appearance_thresh] = 1.0
-        emb_dists[ious_dists_mask] = 1.0
-        dists = np.minimum(ious_dists, emb_dists)
-
-        # Popular ReID method (JDE / FairMOT)
-        # raw_emb_dists = matching.embedding_distance(strack_pool, detections)
-        # dists = matching.fuse_motion(self.kalman_filter, raw_emb_dists, strack_pool, detections)
-        # emb_dists = dists
-
-        # IoU making ReID
-        # dists = matching.embedding_distance(strack_pool, detections)
-        # dists[ious_dists_mask] = 1.0
-        return dists
-
-    def update(self, detections_: List[Detection], img) -> List[Track]:
-        self.frame_id += 1
-        activated_starcks = []
-        refind_stracks = []
-        lost_stracks = []
-        removed_stracks = []
-
-        if len(detections_):
-            scores = np.array([det.confidence for det in detections_])
-            bboxes = np.array([det.tlbr()[:4] for det in detections_])
-            labels = np.array([det.sly_label for det in detections_])
-            features = np.array([det.feature for det in detections_])
-
-            # Remove bad detections
-            lowest_inds = scores > self.args.track_low_thresh
-            bboxes = bboxes[lowest_inds]
-            scores = scores[lowest_inds]
-            labels = labels[lowest_inds]
-            features = features[lowest_inds]
-
-            # Find high threshold detections
-            remain_inds = scores > self.args.track_high_thresh
-            dets = bboxes[remain_inds]
-            scores_keep = scores[remain_inds]
-            labels_keep = labels[remain_inds]
-            features_keep = features[remain_inds]
-        else:
-            bboxes = []
-            scores = []
-            labels = []
-            dets = []
-            scores_keep = []
-            labels_keep = []
-            features_keep = []
-
-        """Extract embeddings """
-        if self.args.with_reid:
-            features_keep = self.encoder.inference(img, dets)
-
-        """Detections"""
-        detections = self._init_track(dets, scores_keep, labels_keep, features_keep)
-
-        """ Add newly detected tracklets to tracked_stracks"""
-        unconfirmed = []
-        tracked_stracks = []  # type: list[STrack]
-        for track in self.tracked_stracks:
-            if not track.is_activated:
-                unconfirmed.append(track)
-            else:
-                tracked_stracks.append(track)
-
-        """ Step 2: First association, with high score detection boxes"""
-        strack_pool: List[Track] = joint_stracks(tracked_stracks, self.lost_stracks)
-
-        # Predict the current location with KF
-        STrack.multi_predict(strack_pool)
-
-        # Fix camera motion
-        warp = self.gmc.apply(img, dets)
-        STrack.multi_gmc(strack_pool, warp)
-        STrack.multi_gmc(unconfirmed, warp)
-
-        dists = self.get_dists(strack_pool, detections)
-
-        matches, u_track, u_detection = matching.linear_assignment(
-            dists, thresh=self.args.match_thresh
-        )
-
-        for itracked, idet in matches:
-            track: Track = strack_pool[itracked]
-            det: Track = detections[idet]
-            if track.state == TrackState.Tracked:
-                track.update(detections[idet], self.frame_id)
-                activated_starcks.append(track)
-            else:
-                track.re_activate(det, self.frame_id, new_id=False)
-                refind_stracks.append(track)
-
-        """ Step 3: Second association, with low score detection boxes"""
-        if len(scores):
-            inds_second = scores < self.args.track_high_thresh
-            dets_second = bboxes[inds_second]
-            scores_second = scores[inds_second]
-            labels_second = labels[inds_second]
-            features_second = features[inds_second]
-        else:
-            dets_second = []
-            scores_second = []
-            labels_second = []
-            features_second = []
-
-        # association the untrack to the low score detections
-        detections_second = self._init_track(
-            dets_second, scores_second, labels_second, features_second
-        )
-
-        r_tracked_stracks = [
-            strack_pool[i] for i in u_track if strack_pool[i].state == TrackState.Tracked
-        ]
-        dists = matching.iou_distance(r_tracked_stracks, detections_second)
-        matches, u_track, u_detection_second = matching.linear_assignment(dists, thresh=0.5)
-        for itracked, idet in matches:
-            track = r_tracked_stracks[itracked]
-            det = detections_second[idet]
-            if track.state == TrackState.Tracked:
-                track.update(det, self.frame_id)
-                activated_starcks.append(track)
-            else:
-                track.re_activate(det, self.frame_id, new_id=False)
-                refind_stracks.append(track)
-
-        for it in u_track:
-            track = r_tracked_stracks[it]
-            if not track.state == TrackState.Lost:
-                track.mark_lost()
-                lost_stracks.append(track)
-
-        """Deal with unconfirmed tracks, usually tracks with only one beginning frame"""
-        detections = [detections[i] for i in u_detection]
-        dists = self.get_dists(unconfirmed, detections)
-        matches, u_unconfirmed, u_detection = matching.linear_assignment(dists, thresh=0.7)
-        for itracked, idet in matches:
-            unconfirmed[itracked].update(detections[idet], self.frame_id)
-            activated_starcks.append(unconfirmed[itracked])
-        for it in u_unconfirmed:
-            track = unconfirmed[it]
-            track.mark_removed()
-            removed_stracks.append(track)
-
-        """ Step 4: Init new stracks"""
-        for inew in u_detection:
-            track = detections[inew]
-            if track.score < self.new_track_thresh:
-                continue
-
-            track.activate(self.kalman_filter, self.frame_id)
-            activated_starcks.append(track)
-
-        """ Step 5: Update state"""
-        for track in self.lost_stracks:
-            if self.frame_id - track.end_frame > self.max_time_lost:
-                track.mark_removed()
-                removed_stracks.append(track)
-
-        """ Merge """
-        self.tracked_stracks = [t for t in self.tracked_stracks if t.state == TrackState.Tracked]
-        self.tracked_stracks = joint_stracks(self.tracked_stracks, activated_starcks)
-        self.tracked_stracks = joint_stracks(self.tracked_stracks, refind_stracks)
-        self.lost_stracks = sub_stracks(self.lost_stracks, self.tracked_stracks)
-        self.lost_stracks.extend(lost_stracks)
-        self.lost_stracks = sub_stracks(self.lost_stracks, self.removed_stracks)
-        self.removed_stracks.extend(removed_stracks)
-        self.tracked_stracks, self.lost_stracks = remove_duplicate_stracks(
-            self.tracked_stracks, self.lost_stracks
-        )
-
-        # output_stracks = [track for track in self.tracked_stracks if track.is_activated]
-        output_stracks = [track for track in self.tracked_stracks]
-
-        return output_stracks
-
-
-class BoTTracker(BaseTracker):
-    def __init__(self, settings=None):
-        if settings is None:
-            settings = {}
-        super().__init__(settings=settings)
-        self.tracker = _BoTSORT(self.args)
-
-        if self.args.with_reid:
-            if not Path(self.args.fast_reid_weights).exists():
-                logger.info("Downloading ReID weights...")
-
-                with requests.get(self.args.fast_reid_weights_url, stream=True) as r:
-                    r.raise_for_status()
-                    with open(self.args.fast_reid_weights, "wb") as f:
-                        for chunk in r.iter_content(chunk_size=8192):
-                            f.write(chunk)
-
-    def default_settings(self):
-        return {
-            "name": None,
-            "ablation": None,
-            # Tracking
-            "track_high_thresh": 0.6,
-            "track_low_thresh": 0.1,
-            "new_track_thresh": 0.7,
-            "track_buffer": 30,
-            "match_thresh": 0.5,
-            "min_box_area": 10,
-            "fuse_score": False,
-            # CMC
-            "cmc_method": "sparseOptFlow",
-            "gmc_config": None,
-            # ReID
-            "with_reid": False,
-            "fast_reid_config": f"{Path(__file__).parent}/fast_reid/configs/MOT17/sbs_S50.yml",
-            "fast_reid_weights": f"pretrained/yolo7x.pt",
-            "fast_reid_weights_url": r"https://github.com/WongKinYiu/yolov7/releases/download/v0.1/yolov7.pt",
-            "proximity_thresh": 0.5,
-            "appearance_thresh": 0.25,
-        }
-
-    def track(
-        self,
-        source: Union[List[np.ndarray], List[str], str],
-        frame_to_annotation: Dict[int, Annotation],
-        frame_shape: Tuple[int, int],
-        pbar_cb=None,
-    ) -> Annotation:
-        """
-        Track objects in the video using BoTSort algorithm.
-
-        :param source: List of images, paths to images or path to the video file.
-        :type source: List[np.ndarray] | List[str] | str
-        :param frame_to_annotation: Dictionary with frame index as key and Annotation as value.
-        :type frame_to_annotation: Dict[int, Annotation]
-        :param frame_shape: Size of the frame (height, width).
-        :type frame_shape: Tuple[int, int]
-        :param pbar_cb: Callback to update progress bar.
-        :type pbar_cb: Callable, optional
-
-        :return: Video annotation with tracked objects.
-        :rtype: VideoAnnotation
-
-        :raises ValueError: If number of images and annotations are not the same.
-
-        :Usage example:
-
-         .. code-block:: python
-
-            import supervisely as sly
-            from supervisely.nn.tracker import BoTTracker
-
-            api = sly.Api()
-
-            project_id = 12345
-            video_id = 12345678
-            video_path = "video.mp4"
-
-            # Download video and get video info
-            video_info = api.video.get_info_by_id(video_id)
-            frame_shape = (video_info.frame_height, video_info.frame_width)
-            api.video.download_path(id=video_id, path=video_path)
-
-            # Run inference app to get detections
-            task_id = 12345 # detection app task id
-            session = sly.nn.inference.Session(api, task_id)
-            annotations = session.inference_video_id(video_id, 0, video_info.frames_count)
-            frame_to_annotation = {i: ann for i, ann in enumerate(annotations)}
-
-            # Run tracker
-            tracker = BoTTracker()
-            video_ann = tracker.track(video_path, frame_to_annotation, frame_shape)
-
-            # Upload result
-            model_meta = session.get_model_meta()
-            project_meta = sly.ProjectMeta.from_json(api.project.get_meta(project_id))
-            project_meta = project_meta.merge(model_meta)
-            api.project.update_meta(project_id, project_meta)
-            api.video.annotation.append(video_id, video_ann)
-
-        """
-        if not isinstance(source, str):
-            if len(source) != len(frame_to_annotation):
-                raise ValueError("Number of images and annotations should be the same")
-
-        tracks_data = {}
-        logger.info("Starting BoTSort tracking...")
-        for frame_index, img in enumerate(self.frames_generator(source)):
-            self.update(img, frame_to_annotation[frame_index], frame_index, tracks_data=tracks_data)
-
-            if pbar_cb is not None:
-                pbar_cb()
-
-        return self.get_annotation(
-            tracks_data=tracks_data,
-            frame_shape=frame_shape,
-            frames_count=len(frame_to_annotation),
-        )
-
-    def update(
-        self, img, annotation: Annotation, frame_index, tracks_data: Dict[int, List[Dict]] = None
-    ):
-        pred, sly_labels = self.convert_annotation(annotation)
-
-        detections = [Detection(p[:4], p[4], None, label) for p, label in zip(pred, sly_labels)]
-
-        self.tracker.update(detections, img)
-
-        if tracks_data is None:
-            tracks_data = {}
-        self.update_track_data(
-            tracks_data=tracks_data,
-            tracks=self.tracker.tracked_stracks,
-            frame_index=frame_index,
-        )
-
-        return tracks_data

supervisely/nn/tracker/deep_sort/__init__.py

@@ -1,6 +0,0 @@
-import pip
-
-# install clip
-pip.main(["install", "git+https://github.com/supervisely-ecosystem/depends-CLIP.git"])
-
-from .sly_tracker import DeepSortTracker

supervisely/nn/tracker/deep_sort/deep_sort/__init__.py

@@ -1 +0,0 @@
-# vim: expandtab:ts=4:sw=4

supervisely/nn/tracker/deep_sort/deep_sort/detection.py

@@ -1,49 +0,0 @@
-# vim: expandtab:ts=4:sw=4
-import numpy as np
-
-
-class Detection(object):
-    """
-    This class represents a bounding box detection in a single image.
-
-    Parameters
-    ----------
-    tlwh : array_like
-        Bounding box in format `(x, y, w, h)`.
-    confidence : float
-        Detector confidence score.
-    feature : array_like
-        A feature vector that describes the object contained in this image.
-
-    Attributes
-    ----------
-    tlwh : ndarray
-        Bounding box in format `(top left x, top left y, width, height)`.
-    confidence : ndarray
-        Detector confidence score.
-    feature : ndarray | NoneType
-        A feature vector that describes the object contained in this image.
-
-    """
-
-    def __init__(self, tlwh, confidence, feature):
-        self.tlwh = np.asarray(tlwh, dtype=float)
-        self.confidence = float(confidence)
-        self.feature = np.asarray(feature, dtype=np.float32)
-
-    def to_tlbr(self):
-        """Convert bounding box to format `(min x, min y, max x, max y)`, i.e.,
-        `(top left, bottom right)`.
-        """
-        ret = self.tlwh.copy()
-        ret[2:] += ret[:2]
-        return ret
-
-    def to_xyah(self):
-        """Convert bounding box to format `(center x, center y, aspect ratio,
-        height)`, where the aspect ratio is `width / height`.
-        """
-        ret = self.tlwh.copy()
-        ret[:2] += ret[2:] / 2
-        ret[2] /= ret[3]
-        return ret

supervisely/nn/tracker/deep_sort/deep_sort/iou_matching.py

@@ -1,81 +0,0 @@
-# vim: expandtab:ts=4:sw=4
-from __future__ import absolute_import
-import numpy as np
-from . import linear_assignment
-
-
-def iou(bbox, candidates):
-    """Computer intersection over union.
-
-    Parameters
-    ----------
-    bbox : ndarray
-        A bounding box in format `(top left x, top left y, width, height)`.
-    candidates : ndarray
-        A matrix of candidate bounding boxes (one per row) in the same format
-        as `bbox`.
-
-    Returns
-    -------
-    ndarray
-        The intersection over union in [0, 1] between the `bbox` and each
-        candidate. A higher score means a larger fraction of the `bbox` is
-        occluded by the candidate.
-
-    """
-    bbox_tl, bbox_br = bbox[:2], bbox[:2] + bbox[2:]
-    candidates_tl = candidates[:, :2]
-    candidates_br = candidates[:, :2] + candidates[:, 2:]
-
-    tl = np.c_[np.maximum(bbox_tl[0], candidates_tl[:, 0])[:, np.newaxis],
-               np.maximum(bbox_tl[1], candidates_tl[:, 1])[:, np.newaxis]]
-    br = np.c_[np.minimum(bbox_br[0], candidates_br[:, 0])[:, np.newaxis],
-               np.minimum(bbox_br[1], candidates_br[:, 1])[:, np.newaxis]]
-    wh = np.maximum(0., br - tl)
-
-    area_intersection = wh.prod(axis=1)
-    area_bbox = bbox[2:].prod()
-    area_candidates = candidates[:, 2:].prod(axis=1)
-    return area_intersection / (area_bbox + area_candidates - area_intersection)
-
-
-def iou_cost(tracks, detections, track_indices=None,
-             detection_indices=None):
-    """An intersection over union distance metric.
-
-    Parameters
-    ----------
-    tracks : List[deep_sort.track.Track]
-        A list of tracks.
-    detections : List[deep_sort.detection.Detection]
-        A list of detections.
-    track_indices : Optional[List[int]]
-        A list of indices to tracks that should be matched. Defaults to
-        all `tracks`.
-    detection_indices : Optional[List[int]]
-        A list of indices to detections that should be matched. Defaults
-        to all `detections`.
-
-    Returns
-    -------
-    ndarray
-        Returns a cost matrix of shape
-        len(track_indices), len(detection_indices) where entry (i, j) is
-        `1 - iou(tracks[track_indices[i]], detections[detection_indices[j]])`.
-
-    """
-    if track_indices is None:
-        track_indices = np.arange(len(tracks))
-    if detection_indices is None:
-        detection_indices = np.arange(len(detections))
-
-    cost_matrix = np.zeros((len(track_indices), len(detection_indices)))
-    for row, track_idx in enumerate(track_indices):
-        if tracks[track_idx].time_since_update > 1:
-            cost_matrix[row, :] = linear_assignment.INFTY_COST
-            continue
-
-        bbox = tracks[track_idx].to_tlwh()
-        candidates = np.asarray([detections[i].tlwh for i in detection_indices])
-        cost_matrix[row, :] = 1. - iou(bbox, candidates)
-    return cost_matrix