ssb-sgis 1.0.2__py3-none-any.whl → 1.0.4__py3-none-any.whl

sgis/raster/sentinel_config.py

@@ -0,0 +1,120 @@
+import re
+
+SENTINEL2_FILENAME_REGEX = r"""
+    ^(?P<tile>T\d{2}[A-Z]{3})
+    _(?P<date>\d{8})T\d{6}
+    _(?P<band>B[018][\dA])
+    (?:_(?P<resolution>\d+)m)?
+    .*
+    \..*$
+"""
+
+
+SENTINEL2_CLOUD_FILENAME_REGEX = r"""
+    ^(?P<tile>T\d{2}[A-Z]{3})
+    _(?P<date>\d{8})T\d{6}
+    _(?P<band>SCL)
+    (?:_(?P<resolution>\d+)m)?
+    .*
+    \..*$
+"""
+
+SENTINEL2_IMAGE_REGEX = r"""
+    ^(?P<mission_id>S2[AB])
+    _MSI(?P<level>[A-Z]\d{1}[A-Z])
+    _(?P<date>\d{8})T\d{6}
+    _(?P<baseline>N\d{4})
+    _(?P<orbit>R\d{3})
+    _(?P<tile>T\d{2}[A-Z]{3})
+    _\d{8}T\d{6}
+    .*
+    .*$
+"""
+
+SENTINEL2_MOSAIC_FILENAME_REGEX = r"""
+    ^SENTINEL2X_
+    (?P<date>\d{8})
+    .*?
+    (?P<tile>T\d{2}[A-Z]{3})
+    .*?
+    _(?P<band>B\d{1,2}A?)_
+    .*?
+    (?:_(?P<resolution>\d+m))?
+    .*?\.tif$
+"""
+
+SENTINEL2_MOSAIC_IMAGE_REGEX = r"""
+    ^SENTINEL2X_
+    (?P<date>\d{8})
+    -\d{6}
+    -\d{3}
+    _(?P<level>[A-Z]\d{1}[A-Z])
+    .*(?P<tile>T\d{2}[A-Z]{3})
+    .*.*$
+"""
+
+
+# multiple regex searches because there are different xml files with same info, but different naming
+CLOUD_COVERAGE_REGEXES: tuple[str] = (
+    r"<Cloud_Coverage_Assessment>([\d.]+)</Cloud_Coverage_Assessment>",
+    r"<CLOUDY_PIXEL_OVER_LAND_PERCENTAGE>([\d.]+)</CLOUDY_PIXEL_OVER_LAND_PERCENTAGE>",
+)
+
+CRS_REGEXES: tuple[str] = (r"<HORIZONTAL_CS_CODE>EPSG:(\d+)</HORIZONTAL_CS_CODE>",)
+
+BOUNDS_REGEXES: tuple[dict[str, str]] = (
+    {"minx": r"<ULX>(\d+)</ULX>", "maxy": r"<ULY>(\d+)</ULY>"},
+)
+BOUNDS_REGEXES: tuple[re.Pattern] = (
+    re.compile(r"<ULX>(?P<minx>\d+)</ULX>"),
+    re.compile(r"<ULY>(?P<maxy>\d+)</ULY>"),
+    # )
+    # SHAPE_PATTERNS: tuple[re.Pattern] = (
+    re.compile(
+        r'<Size resolution="(?P<resolution>\d+)">\s*<NROWS>(?P<nrows>\d+)</NROWS>\s*<NCOLS>(?P<ncols>\d+)</NCOLS>\s*</Size>'
+    ),
+    re.compile(
+        r"<Cloud_Coverage_Assessment>(?P<cloud_coverage_percentage>[\d.]+)</Cloud_Coverage_Assessment>"
+    ),
+    re.compile(
+        r"<CLOUDY_PIXEL_OVER_LAND_PERCENTAGE>(?P<cloud_coverage_percentage>[\d.]+)</CLOUDY_PIXEL_OVER_LAND_PERCENTAGE>"
+    ),
+)
+
+SENTINEL2_L2A_BANDS = {
+    "B01": 60,
+    "B02": 10,
+    "B03": 10,
+    "B04": 10,
+    "B05": 20,
+    "B06": 20,
+    "B07": 20,
+    "B08": 10,
+    "B8A": 20,
+    "B09": 60,
+    "B11": 20,
+    "B12": 20,
+}
+SENTINEL2_L1C_BANDS = SENTINEL2_L2A_BANDS | {"B10": 60}
+SENTINEL2_CLOUD_BANDS = {
+    "SCL": 20,  # SCL: scene classification
+}
+
+SENTINEL2_SCL_CLASSES = {
+    0: "No Data (Missing data)",  # 000000
+    1: "Saturated or defective pixel",  # ff0000
+    2: "Topographic casted shadows",  # 2f2f2f
+    3: "Cloud shadows",  # 643200
+    4: "Vegetation",  # 00a000
+    5: "Not-vegetated",  # ffe65a
+    6: "Water",  # 0000ff
+    7: "Unclassified",  # 808080
+    8: "Cloud medium probability",  # c0c0c0
+    9: "Cloud high probability",  # ffffff
+    10: "Thin cirrus",  # 64c8ff
+    11: "Snow or ice",  # ff96ff
+}
+
+SENTINEL2_BANDS = SENTINEL2_L1C_BANDS | SENTINEL2_CLOUD_BANDS
+SENTINEL2_RBG_BANDS = ["B02", "B03", "B04"]
+SENTINEL2_NDVI_BANDS = ["B04", "B08"]

sgis/raster/zonal.py

@@ -87,7 +87,6 @@ def _clip_and_aggregate(
     if not len(cube):
         return _no_overlap_df(func_names, i, date)
     clipped = cube.clipmerge(polygon)
-    print(list(clipped))
     if not len(clipped) or [arr is None for arr in clipped.arrays]:
         return _no_overlap_df(func_names, i, date)
     assert len(clipped) == 1

{ssb_sgis-1.0.2.dist-info → ssb_sgis-1.0.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: ssb-sgis
-Version: 1.0.2
+Version: 1.0.4
 Summary: GIS functions used at Statistics Norway.
 Home-page: https://github.com/statisticsnorway/ssb-sgis
 License: MIT
@@ -21,12 +21,10 @@ Provides-Extra: torch
 Provides-Extra: xarray
 Requires-Dist: affine (>=2.4.0)
 Requires-Dist: branca (>=0.6.0)
-Requires-Dist: dapla-toolbelt (>=2.0.12) ; extra == "all" or extra == "bucket"
-Requires-Dist: dask (>=2024.1.1)
-Requires-Dist: dask-geopandas (>=0.3.0)
+Requires-Dist: dapla-toolbelt (>=3.0.1) ; extra == "all" or extra == "bucket"
+Requires-Dist: dask (>=2024.1.1) ; extra == "all" or extra == "test"
 Requires-Dist: folium (>=0.14.0)
 Requires-Dist: gcsfs (>=2024.3.1) ; extra == "all" or extra == "bucket"
-Requires-Dist: geocoder (>=1.38.1)
 Requires-Dist: geopandas (>=0.14.0)
 Requires-Dist: igraph (>=0.11.2)
 Requires-Dist: ipython (>=8.13.2)
@@ -36,7 +34,8 @@ Requires-Dist: joblib (>=1.4.0)
 Requires-Dist: mapclassify (>=2.5.0)
 Requires-Dist: matplotlib (>=3.7.0)
 Requires-Dist: networkx (>=3.0)
-Requires-Dist: numpy (>=1.24.2)
+Requires-Dist: numba (>=0.60.0)
+Requires-Dist: numpy (>=1.26.4)
 Requires-Dist: pandas (>=2.2.1)
 Requires-Dist: pyarrow (>=11.0.0)
 Requires-Dist: pyproj (>=3.6.1)
@@ -46,7 +45,7 @@ Requires-Dist: rioxarray (>=0.15.5) ; extra == "all" or extra == "xarray" or ext
 Requires-Dist: rtree (>=1.0.1)
 Requires-Dist: scikit-learn (>=1.2.1)
 Requires-Dist: shapely (>=2.0.1)
-Requires-Dist: torch (==2.2.2) ; extra == "all" or extra == "torch" or extra == "test"
+Requires-Dist: torch (>=2.4.0) ; extra == "all" or extra == "torch" or extra == "test"
 Requires-Dist: torchgeo (>=0.5.2) ; extra == "all" or extra == "torch" or extra == "test"
 Requires-Dist: typing-extensions (>=4.11.0)
 Requires-Dist: xarray (>=2024.3.0) ; extra == "all" or extra == "xarray" or extra == "test"

ssb_sgis-1.0.4.dist-info/RECORD

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+ssb_sgis-1.0.4.dist-info/LICENSE,sha256=np3IfD5m0ZUofn_kVzDZqliozuiO6wrktw3LRPjyEiI,1073
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+ssb_sgis-1.0.4.dist-info/RECORD,,

sgis/raster/torchgeo.py

@@ -1,171 +0,0 @@
-import glob
-import os
-import warnings
-from collections.abc import Callable
-from collections.abc import Iterable
-from typing import ClassVar
-
-import rasterio
-import rasterio.merge
-from rasterio.io import DatasetReader
-from rasterio.vrt import WarpedVRT
-from torchgeo.datasets.geo import RasterDataset
-from torchgeo.datasets.sentinel import Sentinel2 as TorchgeoSentinel2
-
-try:
-    import dapla as dp
-except ImportError:
-    pass
-
-try:
-    from dapla.gcs import GCSFileSystem
-except ImportError:
-
-    class GCSFileSystem:
-        """Placeholder."""
-
-
-try:
-    from gcsfs.core import GCSFile
-except ImportError:
-
-    class GCSFile:
-        """Placeholder."""
-
-
-from ..io._is_dapla import is_dapla
-from ..io.opener import opener
-
-SENTINEL2_FILENAME_REGEX = r"""
-    ^SENTINEL2X_
-    (?P<date>\d{8})
-    .*T(?P<tile>\d{2}[A-Z]{3})
-    .*(?:_(?P<resolution>{}m))?
-    .*(?P<band>B\d{1,2}A|B\d{1,2})
-    .*\..*$
-"""
-
-SENTINEL_2_BANDS = [
-    # "B1",
-    "B2",
-    "B3",
-    "B4",
-    "B5",
-    "B6",
-    "B7",
-    "B8",
-    "B8A",
-    # "B9",
-    # "B10",
-    "B11",
-    "B12",
-]
-SENTINEL_2_RBG_BANDS = ["B4", "B3", "B2"]
-
-
-class GCSRasterDataset(RasterDataset):
-    """Wrapper around torchgeo's RasterDataset that works in and outside of Dapla (stat norway)."""
-
-    def __init__(self, *args, **kwargs) -> None:
-        """Initialiser. Args and kwargs passed to torchgeo.datasets.geo.RasterDataset."""
-        super().__init__(*args, **kwargs)
-        if is_dapla():
-            [file.close() for file in self.files]
-
-    @property
-    def files(self) -> set[GCSFile] | set[str]:
-        """A list of all files in the dataset.
-
-        Returns:
-            All files in the dataset.
-        """
-        if isinstance(self.paths, str):
-            paths: list[str] = [self.paths]
-        else:
-            paths = self.paths
-
-        if is_dapla():
-            fs = dp.FileClient.get_gcs_file_system()
-            files: set[GCSFile] = {
-                fs.open(x)
-                for x in _get_gcs_paths(
-                    paths, filename_glob=self.filename_glob, file_system=fs
-                )
-            }
-            return files
-
-        # Using set to remove any duplicates if directories are overlapping
-        files: set[str] = set()
-        for path in paths:
-            if os.path.isdir(path):
-                pathname = os.path.join(path, "**", self.filename_glob)
-                files |= {
-                    x for x in glob.iglob(pathname, recursive=True) if os.path.isfile(x)
-                }
-            elif os.path.isfile(path):
-                files.add(path)
-            else:
-                warnings.warn(
-                    f"Could not find any relevant files for provided path '{path}'. "
-                    f"Path was ignored.",
-                    UserWarning,
-                    stacklevel=1,
-                )
-
-        return files
-
-    def _load_warp_file(self, filepath: str) -> DatasetReader:
-        """Load and warp a file to the correct CRS and resolution.
-
-        Args:
-            filepath: file to load and warp.
-
-        Returns:
-            file handle of warped VRT.
-        """
-        with opener(filepath) as f:
-            src = rasterio.open(f)
-
-            # Only warp if necessary
-            if src.crs != self.crs:
-                vrt = WarpedVRT(src, crs=self.crs)
-                src.close()
-                return vrt
-            else:
-                return src
-
-
-def _get_gcs_paths(
-    paths: str | Iterable[str],
-    filename_glob: str,
-    file_system: GCSFileSystem | None = None,
-) -> set[str]:
-    if file_system is None:
-        file_system = dp.FileClient.get_gcs_file_system()
-
-    # Using set to remove any duplicates if directories are overlapping
-    out_paths: set[str] = set()
-    for path in paths:
-        pathname = os.path.join(path, "**", filename_glob)
-        if is_dapla():
-            out_paths |= {
-                x for x in file_system.glob(pathname, recursive=True) if "." in x
-            }
-    return out_paths
-
-
-class Sentinel2(GCSRasterDataset):
-    """Works like torchgeo's Sentinel2, with custom regexes."""
-
-    date_format: ClassVar[str] = "%Y%m%d"
-    filename_glob: ClassVar[str] = "SENTINEL2X_*_*.*"
-
-    filename_regex: ClassVar[str] = SENTINEL2_FILENAME_REGEX
-    all_bands: ClassVar[list[str]] = SENTINEL_2_BANDS
-    rgb_bands: ClassVar[list[str]] = SENTINEL_2_RBG_BANDS
-
-    separate_files: ClassVar[bool] = True
-
-    cmap: ClassVar[dict[int, tuple[int, int, int, int]]] = {}
-
-    plot: Callable = TorchgeoSentinel2.plot

ssb_sgis-1.0.2.dist-info/RECORD

@@ -1,61 +0,0 @@
-sgis/__init__.py,sha256=z78RVVd1xmvTVndEHOs3TUK-8kYf95t0rEkKY8fVuE8,6519
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