spacr 0.0.1__py3-none-any.whl → 0.0.2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (27) hide show
  1. spacr/__init__.py +4 -0
  2. spacr/alpha.py +18 -0
  3. spacr/cli.py +25 -187
  4. spacr/core.py +267 -56
  5. spacr/graph_learning.py +276 -0
  6. spacr/graph_learning_lap.py +84 -0
  7. spacr/gui_classify_app.py +197 -0
  8. spacr/gui_mask_app.py +58 -106
  9. spacr/gui_measure_app.py +14 -28
  10. spacr/gui_sim_app.py +0 -0
  11. spacr/gui_utils.py +311 -115
  12. spacr/io.py +260 -112
  13. spacr/measure.py +11 -17
  14. spacr/old_code.py +187 -1
  15. spacr/plot.py +92 -85
  16. spacr/sim.py +8 -1
  17. spacr/timelapse.py +213 -52
  18. spacr/train.py +7 -1
  19. spacr/utils.py +220 -119
  20. spacr-0.0.2.dist-info/METADATA +130 -0
  21. spacr-0.0.2.dist-info/RECORD +31 -0
  22. {spacr-0.0.1.dist-info → spacr-0.0.2.dist-info}/entry_points.txt +2 -0
  23. spacr-0.0.1.dist-info/METADATA +0 -64
  24. spacr-0.0.1.dist-info/RECORD +0 -26
  25. {spacr-0.0.1.dist-info → spacr-0.0.2.dist-info}/LICENSE +0 -0
  26. {spacr-0.0.1.dist-info → spacr-0.0.2.dist-info}/WHEEL +0 -0
  27. {spacr-0.0.1.dist-info → spacr-0.0.2.dist-info}/top_level.txt +0 -0
spacr-0.0.1.dist-info/METADATA DELETED
@@ -1,64 +0,0 @@
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- Metadata-Version: 2.1
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- Name: spacr
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- Version: 0.0.1
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- Summary: A brief description of your package
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- Home-page: https://github.com/EinarOlafsson/spacr
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- Author: Einar Birnir Olafsson
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- Author-email: olafsson@med.umich.com
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- Classifier: Programming Language :: Python :: 3
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- Classifier: License :: OSI Approved :: MIT License
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- Classifier: Operating System :: OS Independent
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- License-File: LICENSE
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- Requires-Dist: torch
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- Requires-Dist: torchvision
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- Requires-Dist: numpy
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- Requires-Dist: pandas
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- Requires-Dist: statsmodels
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- Requires-Dist: scikit-image
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- Requires-Dist: scikit-learn
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- Requires-Dist: seaborn
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- Requires-Dist: matplotlib
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- Requires-Dist: pillow
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- Requires-Dist: imageio
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- Requires-Dist: scipy
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- Requires-Dist: ipywidgets
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- Requires-Dist: mahotas
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- Requires-Dist: btrack
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- Requires-Dist: trackpy
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- Requires-Dist: cellpose
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- Requires-Dist: IPython
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- Requires-Dist: opencv-python-headless
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- Requires-Dist: umap
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- Requires-Dist: ttkthemes
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- Provides-Extra: dev
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- Requires-Dist: pytest >=3.9 ; extra == 'dev'
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- Provides-Extra: full
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- Requires-Dist: opencv-python ; extra == 'full'
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- Provides-Extra: headless
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- Requires-Dist: opencv-python-headless ; extra == 'headless'
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-
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- # SPACR
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-
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- Morphological processing toolset
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-
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- ## Installation
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-
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- Tkinter is need to run
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-
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- ### Ubuntu
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-
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- `apt-get install pyton3-tk`
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-
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-
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- ## Running
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-
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- ### Measuring
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-
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- `measure_gui`
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-
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- pass `path/to/tif/images`
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-
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- ```
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- code
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- block
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- ```
spacr-0.0.1.dist-info/RECORD DELETED
@@ -1,26 +0,0 @@
1
- spacr/__init__.py,sha256=l31dOqsItFjCkgSLu8SuehjjnQ1KQhBkYSyxtXVYJyA,769
2
- spacr/__main__.py,sha256=_qRkhbFrH_cXr7AZs6KHL8Hh4VApqNdpNCtiKn2ePTo,285
3
- spacr/annotate_app.py,sha256=IPgZfS4TrSqbJr81P1FWUNOgCPPcS6EdQjUsXRwY-4E,19932
4
- spacr/cli.py,sha256=wIFnKxz5rXRR6o1XMeTZ7nE9UO_-veRbDbr951Vqp5o,10629
5
- spacr/core.py,sha256=r-i3EwmFXnLDidxmkWTs5-RwGZ-wy4IcnKJF5ntYf-M,109296
6
- spacr/gui_mask_app.py,sha256=vNSfYQm0bhYIJ4LpdLMKscBVaSZtPbJ2txhNsiuXL3Y,9737
7
- spacr/gui_measure_app.py,sha256=sR8bi9aQwYvZC1u-4J8E4SPUG9nP_3RMJ5dWf41DYp8,8502
8
- spacr/gui_utils.py,sha256=4Jsy4uNSZKaFRAxRw4ohaHYFvx6QXn_3nXyD-JBGs_w,21218
9
- spacr/io.py,sha256=LfOqy5ypqjoaRtTyUyxbepBKQnp185C5Cy8A2qb9Cv0,95569
10
- spacr/logger.py,sha256=7Zqr3TuuOQLWT32gYr2q1qvv7x0a2JhLANmZcnBXAW8,670
11
- spacr/mask_app.py,sha256=B6-zYXVFg-cc58gLcz-Ry6LClO2jxLitL6B2ACb0HTw,39278
12
- spacr/measure.py,sha256=WFaPOysbCVM5f48NbBjBJj5JR-hZOWi4iFpai350Cqs,51366
13
- spacr/old_code.py,sha256=dbgDULLqhDQhB7ASWJZk3W9pm2MSA-8t-IR-mn70-mw,3280
14
- spacr/plot.py,sha256=KNLwQP-toD8uyivLZsJ-70ie9QXO3omlkNyyhQ09RmY,54500
15
- spacr/sim.py,sha256=jqIp-tmqH5UT-1oNQ-6_QqnTipUEsd638NRhfrgcILk,51390
16
- spacr/timelapse.py,sha256=_j6cSVaxOhM7mTfJuNNRKogJaIGz_fM92MIegE6Ykh0,25355
17
- spacr/train.py,sha256=fUvh6BMwwmodSGZGUzL420leXOQW2k4WOKB_wwlwSM4,25361
18
- spacr/umap.py,sha256=4QSrQ16Og-Ijq-SwguMQT2f20UWz1LE5HQeSLmzSl8c,29370
19
- spacr/utils.py,sha256=g_I2IdxCtaNDownnnYnQ0114XaL2zSjBKeeQOHpY3v8,116770
20
- spacr/version.py,sha256=axH5tnGwtgSnJHb5IDhiu4Zjk5GhLyAEDRe-rnaoFOA,409
21
- spacr-0.0.1.dist-info/LICENSE,sha256=SR-2MeGc6SCM1UORJYyarSWY_A-JaOMFDj7ReSs9tRM,1083
22
- spacr-0.0.1.dist-info/METADATA,sha256=2eEdG7LBuM11Qo5-AQ1Oq7uCdk00EBAQQAmR0NZQIDs,1326
23
- spacr-0.0.1.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
24
- spacr-0.0.1.dist-info/entry_points.txt,sha256=WgVTXZSjmP1ZnQ1h4mdMldCJr_a8pWW8iB1SJ1J2PJ0,203
25
- spacr-0.0.1.dist-info/top_level.txt,sha256=GJPU8FgwRXGzKeut6JopsSRY2R8T3i9lDgya42tLInY,6
26
- spacr-0.0.1.dist-info/RECORD,,
{spacr-0.0.1.dist-info → spacr-0.0.2.dist-info}/LICENSE RENAMED
File without changes
{spacr-0.0.1.dist-info → spacr-0.0.2.dist-info}/WHEEL RENAMED
File without changes