snappy 3.1.1__cp311-cp311-macosx_11_0_arm64.whl → 3.2__cp311-cp311-macosx_11_0_arm64.whl

snappy/hyperboloid/line.py

@@ -0,0 +1,35 @@
+from ..hyperboloid import r13_dot
+
+__all__ = [ 'R13Line' ]
+
+class R13Line:
+    """
+    A line in the hyperboloid model - represented by two
+    like-like vectors spanning the line.
+
+    For distance computations, the inner product between the two
+    vectors is stored as well.
+    """
+
+    def __init__(self,
+                 points, # Two light-like vectors
+                 inner_product=None): # Optional: their inner product
+        """
+        inner_product can be given if known, otherwise, will be computed.
+        """
+        self.points = points
+        if inner_product is None:
+            self.inner_product = r13_dot(points[0], points[1])
+        else:
+            self.inner_product = inner_product
+
+    def transformed(self,
+                    m): # O13-matrix
+        """
+        Returns image of the line under given O13-matrix m.
+        """
+
+        return R13Line(
+            [ m * point for point in self.points],
+            self.inner_product)
+

snappy/hyperboloid/point.py

@@ -0,0 +1,9 @@
+__all__ = [ 'R13Point' ]
+
+class R13Point:
+    def __init__(self, point):
+        self.point = point
+
+    def transformed(self,
+                    m): # O13-matrix
+        return R13Point(m * self.point)

snappy/hyperboloid/triangle.py

@@ -0,0 +1,29 @@
+from .line import R13Line
+from . import (time_r13_normalise,
+               space_r13_normalise,
+               r13_dot)
+
+from typing import Sequence
+
+__all__ = ['R13IdealTriangle']
+
+class R13IdealTriangle:
+    def __init__(self,
+                 plane, # one space-like normal vector
+                 bounding_planes, # three space-like normal vectors
+                 edges : Sequence[R13Line] # Same order as bounding_planes
+                 ):
+        self.plane = plane
+        self.bounding_planes = bounding_planes
+        self.edges = edges
+
+def triangle_bounding_plane(v_opp, v0, v1):
+    m = time_r13_normalise(
+        -(r13_dot(v1, v_opp) * v0 + r13_dot(v0, v_opp) * v1))
+
+    return _make_r13_unit_tangent_vector(m - v_opp, m)
+
+def _make_r13_unit_tangent_vector(direction, point):
+    s = r13_dot(direction, point)
+    return space_r13_normalise(direction + s * point)
+

snappy/isometry_signature.py

@@ -0,0 +1,382 @@
+from . import Triangulation, TriangulationHP, ManifoldHP
+from . import verify
+from .sage_helper import _within_sage
+from .math_basics import is_RealIntervalFieldElement
+from .exceptions import InsufficientPrecisionError, NonorientableManifoldError
+from .geometric_structure.geodesic.exceptions import WordAppearsToBeParabolic
+from .decorated_isosig import key_slope, normalized_slope
+from .matrix import make_vector
+
+def isometry_signature(
+    manifold, of_link=False, ignore_orientation=True, verified=False,
+    interval_bits_precs=verify.default_interval_bits_precs,
+    exact_bits_prec_and_degrees=verify.default_exact_bits_prec_and_degrees,
+    verbose=False) -> str:
+    """
+    Returns the "isometry signature", a complete invariant of the hyperbolic
+    3-manifold obtained by applying the Dehn-fillings.
+    The isometry signature is always a (decorated) isomorphism signature, see
+    :meth:`.triangulation_isosig`, and was introduced in
+    `Goerner '16 <http://arxiv.org/abs/1502.00383>`_.
+
+    Depending on :attr:`ignore_orientation`, it is a complete invariant of
+    either the oriented (if orientable) or unoriented hyperbolic 3-manifold.
+    If :attr:`of_link = True` is specified, the signature is decorated by the
+    unoriented peripheral curves (aka meridian and longitude, up to homotopy).
+    If the 3-manifold arises as a link complement, the decorated isometry
+    signature obtained with :attr:`of_link = True` is a complete invariant of
+    the link.
+
+    The isometry signature is computed differently based on whether there
+    is at least one unfilled cusp.
+    
+    **Cusped manifolds**
+
+    If there is at least one unfilled cusped, we are in the cusped case.
+
+    Here is an example of two links having isometric (hyperbolic) complements:
+
+      >>> M = Manifold("L5a1")
+      >>> N = Manifold("L7n2")
+      >>> M.isometry_signature()
+      'eLPkbdcddhgggb'
+      >>> N.isometry_signature()
+      'eLPkbdcddhgggb'
+
+    The complements do have opposite handedness though::
+    
+      >>> M.isometry_signature(ignore_orientation=False)
+      'eLPkbdcddxvvcv'
+      >>> N.isometry_signature(ignore_orientation=False)
+      'eLPkbdcddhgggb'
+
+    We can show that the two links are distinct::
+
+       >>> M.isometry_signature(of_link = True)
+       'eLPkbdcddhgggb_baCbbaCb'
+       >>> N.isometry_signature(of_link = True)
+       'eLPkbdcddhgggb_bBcBbaCb'
+
+    If we Dehn-fill some cusps, the method uses the filled triangulation.
+    Here, we Dehn-fill the Whitehead link to get the figure-eight knot::
+
+       >>> M.dehn_fill((1,1), 0)
+       >>> M.isometry_signature(of_link = True)
+       'cPcbbbiht_bacb'
+       >>> Manifold("4_1").isometry_signature(of_link = True)
+       'cPcbbbiht_bacb'
+
+    In general, the isometry signature is the isomorphism signature (see
+    :meth:`.triangulation_isosig`) of the
+    :meth:`.canonical_retriangulation` of the
+    :meth:`.filled_triangulation`::
+
+       >>> T = M.filled_triangulation().canonical_retriangulation()
+       >>> T.triangulation_isosig(ignore_cusp_ordering = True,
+       ...                        ignore_curve_orientations = True)
+       'cPcbbbiht_bacb'
+
+    **Closed manifolds**
+
+    If all cusps are filled, we are in the closed case. In this case, the
+    isometry signature gives the resulting closed hyperbolic 3-manifold as
+    canonical surgery on a hyperbolic 1-cusped manifold (which is encoded by
+    its isometry signature). Only orientable manifolds are supported in the
+    closed case.
+
+       >>> M = Manifold("v2000(1,3)")
+       >>> M.isometry_signature()
+       'fLLQcacdedenbxxrr(-7,12)'
+
+    The following code illustrates how the isometry signature is computed::
+
+       >>> M.length_spectrum_alt(count=2) # doctest: +NUMERIC9
+       [Length                                      Core curve  Word
+        0.06491027903143 - 2.63765810995071*I       -           d,
+        0.49405010583448 + 2.38451103485706*I       -           a]
+       >>> K = M.drill_word('d').filled_triangulation().canonical_retriangulation()
+       >>> K.dehn_fill((1,0), 0)
+       >>> K.triangulation_isosig(ignore_cusp_ordering=True, ignore_curves=True)
+       'fLLQcacdedenbxxrr(-7,12)'
+
+    Note that there is clearly a unique shortest geodesic in this example.
+    In general, the method first considers a canonical set of geodesics.
+    For each such geodesic, it computes a candidate signature as above. It
+    then picks a canonical signature among the candidates. Further details
+    can be found in an upcoming paper.
+
+    **Verified computations**
+
+    While the isometry signature is purely combinatorial, some intermediate
+    computations are numerical. Thus, if :attr:`verified = False`,
+    floating-point issues can arise.
+
+    The method can be made :ref:`verified <verify-primer>` by passing
+    :attr:`verified = True`::
+
+       sage: M=Manifold("m007(4,1)")
+       sage: M.isometry_signature(verified=True)
+       'eLPkbcdddhggsj(3,1)'
+
+    This method always needs to compute at least one canonical retriangulation.
+    It can take the same arguments as :meth:`.canonical_retriangulation` and
+    passes them to :meth:`.canonical_retriangulation` when computing the
+    verified canonical retriangulation. If the manifold is closed, interval
+    arithmetic is used when finding and drilling the short geodesics.
+
+    :param of_link:
+            Also encode the unoriented peripheral curves.
+            Note that it is not necessary for the manifold to be a link
+            complement to invoke this flag.
+            Only relevant in the cusped case.
+    :param ignore_orientation:
+            Do not encode the orientation of the 3-manifold.
+    :param verified:
+            Use :ref:`verified computation <verify-primer>`.
+    :param interval_bits_precs:
+            Passed to :meth:`.canonical_retriangulation` and (in the closed
+            case) also used when calling :meth:`.length_spectrum_alt_gen` and
+            :meth:`.drill_word` to find and drill the short geodesics.
+    :param exact_bits_prec_and_degrees:
+            Passed to :meth:`.canonical_retriangulation`.
+    :param verbose:
+            Print information about finding and drilling the short geodesics.
+            Also passed to :meth:`.canonical_retriangulation`.
+    """
+
+    if any(manifold.cusp_info('complete?')):
+        return isometry_signature_cusped(
+            manifold,
+            of_link=of_link,
+            ignore_orientation=ignore_orientation,
+            verified=verified,
+            interval_bits_precs=interval_bits_precs,
+            exact_bits_prec_and_degrees=exact_bits_prec_and_degrees,
+            verbose=verbose)
+    else:
+        return isometry_signature_closed(
+            manifold,
+            ignore_orientation=ignore_orientation,
+            verified=verified,
+            interval_bits_precs=interval_bits_precs,
+            exact_bits_prec_and_degrees=exact_bits_prec_and_degrees,
+            verbose=verbose)
+
+
+def isometry_signature_cusped(
+        manifold, *,
+        of_link,
+        ignore_orientation,
+        verified,
+        interval_bits_precs,
+        exact_bits_prec_and_degrees,
+        verbose):
+    if not all(manifold.cusp_info('complete?')):
+        manifold = manifold.filled_triangulation()
+        if not all(manifold.cusp_info('complete?')):
+            raise ValueError(
+                'Could not compute filled triangulation. '
+                'Are the filling coefficients co-prime integers?')
+
+    retrig = manifold.canonical_retriangulation(
+        verified=verified,
+        interval_bits_precs=interval_bits_precs,
+        exact_bits_prec_and_degrees=exact_bits_prec_and_degrees,
+        verbose=verbose)
+
+    return retrig.triangulation_isosig(
+        decorated=of_link,
+        ignore_cusp_ordering=True,
+        ignore_curve_orientations=True,
+        ignore_orientation=ignore_orientation)
+
+def isometry_signature_closed(
+        manifold, *,
+        ignore_orientation,
+        verified,
+        interval_bits_precs,
+        exact_bits_prec_and_degrees,
+        verbose):
+
+    if not manifold.is_orientable():
+        raise NonorientableManifoldError(
+            "Manifold.isometry_signature (closed case)", manifold)
+
+    if verbose:
+        print("Step 1: Finding shortest geodesics")
+
+    shortest_geodesics = find_shortest_geodesics_precisions(
+        manifold,
+        bits_precs=interval_bits_precs,
+        verified=verified,
+        verbose=verbose)
+
+    if verbose:
+        print("Step 2: Drill each geodesic for potential isometry signatures")
+
+    potential_signatures = []
+
+    for shortest_geodesic in shortest_geodesics:
+        if verbose:
+            print("Drilling ", shortest_geodesic)
+
+        drilled_manifold = drill_manifold_precisions(
+            manifold, shortest_geodesic,
+            bits_precs=interval_bits_precs,
+            verified=verified,
+            verbose=verbose)
+
+        if not all(drilled_manifold.cusp_info('complete?')):
+            drilled_manifold = drilled_manifold.filled_triangulation()
+
+        if verbose:
+            print("Computing isometry signature of drilled manifold")
+
+        try:
+            retrig = drilled_manifold.canonical_retriangulation(
+                verified=verified,
+                interval_bits_precs=interval_bits_precs,
+                exact_bits_prec_and_degrees=exact_bits_prec_and_degrees,
+                verbose=verbose)
+        except Exception as e:
+            raise RuntimeError(
+                "Could not compute or verify canonical retriangulation of "
+                "drilled manifold. "
+                "Geodesic was: %s." % shortest_geodesic) from e
+
+        isosig = retrig.triangulation_isosig(
+            decorated=False,
+            ignore_orientation=ignore_orientation)
+
+        for slope in compute_meridian_slopes(isosig, retrig):
+            sig = (isosig, slope)
+            if verbose:
+                print("Potential isometry signature %s%r" % sig)
+            potential_signatures.append(sig)
+
+    isosig, (m, l) = min(potential_signatures, key=key_signature)
+
+    return '%s(%d,%d)' % (isosig, m, l)
+
+
+def find_shortest_geodesics_precisions(
+        manifold, *, bits_precs, verified, verbose):
+
+    err = ValueError("bits_precs was empty.")
+
+    for bits_prec in bits_precs:
+        if verbose:
+            print("Using precision %d to find shortest geodesics" % bits_prec)
+        try:
+            return find_shortest_geodesics(
+                manifold,
+                bits_prec=bits_prec,
+                verified=verified,
+                verbose=verbose)
+        except (InsufficientPrecisionError,
+                ValueError,
+                RuntimeError # from Manifold.tetrahedra_shapes
+                ) as e:
+            err = e
+
+    raise err
+
+
+def find_shortest_geodesics(manifold, *, bits_prec, verified, verbose):
+    length_spectrum = manifold.length_spectrum_alt_gen(
+        bits_prec=bits_prec, verified=verified)
+
+    is_first = True
+
+    words_to_drill = []
+
+    for geodesic in length_spectrum:
+        if is_first:
+            systole = geodesic.length.real()
+            cutoff = compute_cutoff(systole)
+            is_first = False
+            if verbose:
+                print("Systole: ", systole)
+                print("Cutoff for shortest geodesics: ", cutoff)
+
+        r = geodesic.length.real()
+
+        if verbose:
+            print("Word: ", geodesic.word)
+            print("Geodesic length: ", r)
+
+        if r > cutoff:
+            break
+
+        if r < cutoff:
+            if verbose:
+                print("Adding word to candidates")
+            words_to_drill.append(geodesic.word)
+            continue
+
+        raise InsufficientPrecisionError(
+            "Could not determine whether geodesic length is "
+            "less or greater than cutoff.\n"
+            "Cutoff: %r\n"
+            "Length: %r\n" % (cutoff, r))
+
+    return words_to_drill
+
+_cutoff_binary_digits = 16
+
+def compute_cutoff(systole):
+    RF = systole.parent()
+
+    if _within_sage:
+        l = systole.log2()
+    else:
+        l = systole.log() / RF(2).log()
+
+    f = l.floor()
+
+    if is_RealIntervalFieldElement(l):
+        is_int, f_int = f.is_int()
+        if not is_int:
+            raise InsufficientPrecisionError(
+                "Could not determine magnitude of systole.")
+    else:
+        f_int = f
+
+    return systole + RF(2) ** (f_int - _cutoff_binary_digits)
+
+def drill_manifold_precisions(
+        manifold, word, *,
+        bits_precs, verified, verbose):
+
+    err = ValueError("bits_precs was empty.")
+
+    for bits_prec in bits_precs:
+        try:
+            if verbose:
+                print("Drilling with precision %d" % bits_prec)
+
+            return manifold.drill_word(
+                word,
+                bits_prec=bits_prec,
+                verified=verified,
+                verbose=verbose)
+        except (InsufficientPrecisionError,
+                ValueError,
+                RuntimeError, # from Manifold.tetrahedra_shapes
+                WordAppearsToBeParabolic) as e:
+            err = e
+
+    raise err
+
+def compute_meridian_slopes(isosig, tri):
+    isosig_tri = Triangulation(isosig, remove_finite_vertices=False)
+    # Do not call isosig_tri.set_peripheral_curves('combinatorial')
+    # here.
+    for iso in tri.isomorphisms_to(isosig_tri):
+        cusp_map, = iso.cusp_maps()
+        slope = make_vector([cusp_map[0,0], cusp_map[1,0]])
+        yield normalized_slope(slope)
+
+def key_signature(signature):
+    isosig, slope = signature
+    return (isosig, key_slope(slope))