small-fish-gui 1.8.0__py3-none-any.whl → 1.9.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (20) hide show
  1. small_fish_gui/__init__.py +1 -1
  2. small_fish_gui/batch/pipeline.py +4 -1
  3. small_fish_gui/batch/prompt.py +10 -10
  4. small_fish_gui/gui/layout.py +7 -11
  5. small_fish_gui/gui/{napari.py → napari_visualiser.py} +159 -21
  6. small_fish_gui/gui/prompts.py +1 -1
  7. small_fish_gui/gui/testing.ipynb +422 -0
  8. small_fish_gui/hints.py +1 -1
  9. small_fish_gui/interface/inoutput.py +59 -1
  10. small_fish_gui/pipeline/_colocalisation.py +66 -41
  11. small_fish_gui/pipeline/actions.py +34 -24
  12. small_fish_gui/pipeline/detection.py +66 -15
  13. small_fish_gui/pipeline/main.py +7 -7
  14. small_fish_gui/pipeline/segmentation.py +1 -1
  15. small_fish_gui/pipeline/spots.py +7 -0
  16. small_fish_gui/pipeline/testing.ipynb +2067 -0
  17. {small_fish_gui-1.8.0.dist-info → small_fish_gui-1.9.0.dist-info}/METADATA +3 -2
  18. {small_fish_gui-1.8.0.dist-info → small_fish_gui-1.9.0.dist-info}/RECORD +20 -18
  19. {small_fish_gui-1.8.0.dist-info → small_fish_gui-1.9.0.dist-info}/WHEEL +1 -1
  20. {small_fish_gui-1.8.0.dist-info → small_fish_gui-1.9.0.dist-info}/licenses/LICENSE +0 -0
{small_fish_gui-1.8.0.dist-info → small_fish_gui-1.9.0.dist-info}/METADATA RENAMED
@@ -1,10 +1,11 @@
1
- Metadata-Version: 2.3
1
+ Metadata-Version: 2.4
2
2
  Name: small_fish_gui
3
- Version: 1.8.0
3
+ Version: 1.9.0
4
4
  Summary: Small Fish is a python application for the analysis of smFish images. It provides a ready to use graphical interface to combine famous python packages for cell analysis without any need for coding.
5
5
  Project-URL: Homepage, https://github.com/2Echoes/small_fish
6
6
  Project-URL: Issues, https://github.com/2Echoes/small_fish/issues
7
7
  Author-email: Slimani Floric <floric.slimani@live.com>
8
+ License-File: LICENSE
8
9
  Classifier: License :: OSI Approved :: BSD License
9
10
  Classifier: Operating System :: OS Independent
10
11
  Classifier: Programming Language :: Python :: 3
{small_fish_gui-1.8.0.dist-info → small_fish_gui-1.9.0.dist-info}/RECORD RENAMED
@@ -2,9 +2,9 @@ small_fish_gui/.readthedocs.yaml,sha256=r2T0e_In8X8l0_ZwgPvuoWQ9c0PE9bSpFzV2W6Ez
2
2
  small_fish_gui/LICENSE,sha256=-iFy8VGBYs5VsHglKpk4D-hxqQ2jMJaqmfq_ulIzDks,1303
3
3
  small_fish_gui/README.md,sha256=4RpEXKZW5vH6sUWeZb88yr1TLLPi20PqOk7KdA9O9Hk,4234
4
4
  small_fish_gui/Segmentation example.jpg,sha256=opfiSbjmfF6z8kBs08sg_FNR2Om0AcMPU5sSwSLHdoQ,215038
5
- small_fish_gui/__init__.py,sha256=AOkS4cxFmXcSkoisvufIeqzeETWYnRPA-bAQwDeuwps,1941
5
+ small_fish_gui/__init__.py,sha256=NAO9zD3llJ5ST2ZjY5DmlJ5Yncl50TO84Gp5568YQQ8,1941
6
6
  small_fish_gui/__main__.py,sha256=jjFNnf-l4jCJI16epq2KOaKmgtUAe9lSNdPj5fpxrDk,1143
7
- small_fish_gui/hints.py,sha256=nSnaz-vs2CeOqRj8MqxnIxYCf8fhwNYUigJTImm1nM8,1926
7
+ small_fish_gui/hints.py,sha256=_AhC-Th36ELxinjMyGtjIqJfZkISPr1YwhQ9ifD9Kj4,1926
8
8
  small_fish_gui/napari_detection_example.png,sha256=l5EZlrbXemLiGqb5inSVsD6Kko1Opz528-go-fBfrw8,977350
9
9
  small_fish_gui/requirements.txt,sha256=9OMfUAnLdHevq6w_fVoDmVmkSMJeFofkOK_86_fu9C0,321
10
10
  small_fish_gui/utils.py,sha256=LM6QW2ono_LIRv7JXIIq7ZxxbDXqBtZ5uR9gjKJfwM8,1903
@@ -12,8 +12,8 @@ small_fish_gui/.github/workflows/python-publish.yml,sha256=5Ltnuhw9TevhzndlBmdUg
12
12
  small_fish_gui/batch/__init__.py,sha256=ku2_Yate-UG89Q0BmE2B9kFV4kOz-u9Lf2lj6VsdFXs,127
13
13
  small_fish_gui/batch/input.py,sha256=mqnP8LBhyNbtlcqjVlUiVeuHw4YxOX3GgzJbq03isKE,1477
14
14
  small_fish_gui/batch/integrity.py,sha256=jIJH0c_M_7gSET32iKWEznHIad0OwPNvJurA9rivTJ0,4851
15
- small_fish_gui/batch/pipeline.py,sha256=ka43HQpScvxZ1HY1kSPUUCu0igbevT0BD8dWyY5ZlNA,8961
16
- small_fish_gui/batch/prompt.py,sha256=S_SX30SPVda4WjqffF1Pnnzkk84o9uIO-BduA5Iv8NQ,18796
15
+ small_fish_gui/batch/pipeline.py,sha256=ZFb1cGinm-4WLy1vpvPBFA_MvUXQ4UvXkYA74en670c,9065
16
+ small_fish_gui/batch/prompt.py,sha256=Ob6Cml3IJTInMJ_9kSwLOKzwna7igbk91D2eaA7I1bo,18849
17
17
  small_fish_gui/batch/test.py,sha256=q04a1YstnDsxy2Bi5563BfcOU-O3VPE9c5WSJjvFjMg,211
18
18
  small_fish_gui/batch/update.py,sha256=AFG2oW5zfbNPJbb1jqbkMexPB8NoR4ZoftqpO3cAsok,5042
19
19
  small_fish_gui/batch/utils.py,sha256=JGRgaPcNQ5V2Hr8ObtmmMKqm3fB237Iym6aBawWY8Oo,1782
@@ -22,29 +22,31 @@ small_fish_gui/gui/__init__.py,sha256=xQ_BfYcnQmKZtx_0leO4OmbkLNLv49ZPqEu_UXMgmD
22
22
  small_fish_gui/gui/_napari_widgets.py,sha256=8IMppaPZU37ANdZwTZOhwqCEly0hokzYL7UIVIixGns,3022
23
23
  small_fish_gui/gui/animation.py,sha256=rnNP5FPp06Hu-R33c4AVTCknALBbxT2YlsKFCXHAp9k,981
24
24
  small_fish_gui/gui/help_module.py,sha256=XvGCNIcEGRG8ESJ55poCPhBM60Bl4w_ZxoVp-Ev6lTo,9612
25
- small_fish_gui/gui/layout.py,sha256=fy1Ev952dJpVHk5BV0E8rjjUSqdaiEb3TDTb5smlQu8,14395
26
- small_fish_gui/gui/napari.py,sha256=XiahTyq7QEQAuF6EK3-e--3-A8yBPVn0oaVZZyJo0qo,8607
27
- small_fish_gui/gui/prompts.py,sha256=1CVXatzS4edDI0bLSSBKaEEJSWaNQPtL__1AzbPYLdQ,15391
25
+ small_fish_gui/gui/layout.py,sha256=cA8ddzwbxVqTl5-VOoKvYKP0Fki17x2dczidSdW3ayA,14186
26
+ small_fish_gui/gui/napari_visualiser.py,sha256=IZEOTAlCoj-w9M9ubm3VTiEJH-Li5zm9mJFkPK-kmJ4,14733
27
+ small_fish_gui/gui/prompts.py,sha256=akphsDghaUngmqz3yBpyMPeTrRfye-Flkyixc9JSs74,15406
28
+ small_fish_gui/gui/testing.ipynb,sha256=5xoMDR2a3aa4q8KoEoJ22HrcWDyHkCF4arVeVVm7ovs,71500
28
29
  small_fish_gui/gui/screenshot/general_help_screenshot.png,sha256=X4E6Td5f04K-pBUPDaBJRAE3D5b8fuEdiAUKhkIDr-0,54210
29
30
  small_fish_gui/gui/screenshot/mapping_help_screenshot.png,sha256=HcuRh5TYciUogUasza5vZ_QSshaiHsskQK23mh9vQS8,34735
30
31
  small_fish_gui/gui/screenshot/segmentation_help_screenshot.png,sha256=rbSgIydT0gZtfMh1qk4mdMbEIyCaakvHmxa2eOrLwO0,118944
31
32
  small_fish_gui/interface/__init__.py,sha256=_yCOvJjrMGVeGx9Lkyqp7t3fAztt67w2ZKLPj8_kfYc,277
32
33
  small_fish_gui/interface/image.py,sha256=VBSfIVcR50aJxxbD_ILflPX4esW9lXPArfHpVQynzCc,1100
33
- small_fish_gui/interface/inoutput.py,sha256=d_ICDoTcR0iaDBeJnM29Mc_M1td_AUAk1Fd-iTTyyGI,3119
34
+ small_fish_gui/interface/inoutput.py,sha256=f20t9WDub8xLELCYGMvTsB3LzSxYusnpkMYQy9LrNwU,5026
34
35
  small_fish_gui/interface/testing.py,sha256=MMWNzAUE_Le3fqt2HY9rLXHQKv5c8ujON2PTooNnyLw,397
35
36
  small_fish_gui/pipeline/__init__.py,sha256=Oww6dcuvnktl5jFKLriz8ZXObKo9MkneE739A8C1reY,739
36
- small_fish_gui/pipeline/_colocalisation.py,sha256=wI2mM5SLWJdSXsyJAj12CVuX_gMU7D25A0OsB_8tx2A,19232
37
+ small_fish_gui/pipeline/_colocalisation.py,sha256=oNMKfl2sUmFR4ipHEfvVbkOLf94_dmE-ay_co6kt2T0,21231
37
38
  small_fish_gui/pipeline/_custom_errors.py,sha256=tQ-AUhgzIFpK30AZiQQrtHCHyGVRDdAoIjzL0Fk-1pA,43
38
39
  small_fish_gui/pipeline/_preprocess.py,sha256=IrkQp_YCVFPrwElCEn-alpVChfLbR_0KAdb0WV2BfKI,15089
39
40
  small_fish_gui/pipeline/_signaltonoise.py,sha256=7A9t7xu7zghI6cr201Ldm-LjJ5NOuP56VSeJ8KIzcUo,8497
40
- small_fish_gui/pipeline/actions.py,sha256=u4yPvMnGnL78LuIg5lnSPmPSk-erRq9frE28qQTQUPI,15480
41
- small_fish_gui/pipeline/detection.py,sha256=vgHy-xZvAKxJaaZa7xcc9oRKpJdso7NvL3psrUwcW3s,33225
42
- small_fish_gui/pipeline/main.py,sha256=ujqwwJp0nj3PWJNXlA7aWJsC-mcGANSMmw1SE4EYX84,4695
43
- small_fish_gui/pipeline/segmentation.py,sha256=dmQ9afugX7wMVSVwpJ15EZ-KEH7fbeddV56zE30Sxc4,19900
44
- small_fish_gui/pipeline/spots.py,sha256=mam9w9qi8MGmMirOcWFGIaz4nsxntPyZhetV7uSga80,1965
41
+ small_fish_gui/pipeline/actions.py,sha256=7DmChUin3Zct7utVKj4zRpSMu4i5m2ctheOevbNCxa8,15745
42
+ small_fish_gui/pipeline/detection.py,sha256=IXSbRRUDzJA8-cX30J-2wHRER2pfEXEF-9TxKCEYF8Q,34527
43
+ small_fish_gui/pipeline/main.py,sha256=2Oi6wz9jG9LA2gclTkIeFolJ4AON5AN6fFldOQsaXGw,4829
44
+ small_fish_gui/pipeline/segmentation.py,sha256=MtGOcGWJPaJo7oa0YG2qB7LwDLIogJHCioSQxFecUqc,19911
45
+ small_fish_gui/pipeline/spots.py,sha256=9hNOGnOZhrtrIORt8UGBcI-SGCh1XftcUGerkBwN-QY,2201
45
46
  small_fish_gui/pipeline/test.py,sha256=w4ZMGDmUDXxVgWTlZ2TKw19W8q5gcE9gLMKe0SWnRrw,2827
47
+ small_fish_gui/pipeline/testing.ipynb,sha256=eMynROxPIa5uW6E2nb_CwA4X4Peiqa4QS68JcADrAnM,76479
46
48
  small_fish_gui/pipeline/utils.py,sha256=run6qtqCAe_mFnE3o1CnmF1xBBmK3ydgc8-jOV9P-_w,448
47
- small_fish_gui-1.8.0.dist-info/METADATA,sha256=kcahOCZBF7dBSPirS4RAfctLYprcVTXrOM5W7A8O5Tg,2545
48
- small_fish_gui-1.8.0.dist-info/WHEEL,sha256=C2FUgwZgiLbznR-k0b_5k3Ai_1aASOXDss3lzCUsUug,87
49
- small_fish_gui-1.8.0.dist-info/licenses/LICENSE,sha256=-iFy8VGBYs5VsHglKpk4D-hxqQ2jMJaqmfq_ulIzDks,1303
50
- small_fish_gui-1.8.0.dist-info/RECORD,,
49
+ small_fish_gui-1.9.0.dist-info/METADATA,sha256=EN_U5bakmWkSKdm2197zNPXWMuFnxS87oLNWSC7vOpM,2567
50
+ small_fish_gui-1.9.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
51
+ small_fish_gui-1.9.0.dist-info/licenses/LICENSE,sha256=-iFy8VGBYs5VsHglKpk4D-hxqQ2jMJaqmfq_ulIzDks,1303
52
+ small_fish_gui-1.9.0.dist-info/RECORD,,
{small_fish_gui-1.8.0.dist-info → small_fish_gui-1.9.0.dist-info}/WHEEL RENAMED
@@ -1,4 +1,4 @@
1
1
  Wheel-Version: 1.0
2
- Generator: hatchling 1.26.3
2
+ Generator: hatchling 1.27.0
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any