small-fish-gui 1.8.0__py3-none-any.whl → 1.9.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- small_fish_gui/__init__.py +1 -1
- small_fish_gui/batch/pipeline.py +4 -1
- small_fish_gui/batch/prompt.py +10 -10
- small_fish_gui/gui/layout.py +7 -11
- small_fish_gui/gui/{napari.py → napari_visualiser.py} +159 -21
- small_fish_gui/gui/prompts.py +1 -1
- small_fish_gui/gui/testing.ipynb +422 -0
- small_fish_gui/hints.py +1 -1
- small_fish_gui/interface/inoutput.py +59 -1
- small_fish_gui/pipeline/_colocalisation.py +66 -41
- small_fish_gui/pipeline/actions.py +34 -24
- small_fish_gui/pipeline/detection.py +66 -15
- small_fish_gui/pipeline/main.py +7 -7
- small_fish_gui/pipeline/segmentation.py +1 -1
- small_fish_gui/pipeline/spots.py +7 -0
- small_fish_gui/pipeline/testing.ipynb +2067 -0
- {small_fish_gui-1.8.0.dist-info → small_fish_gui-1.9.0.dist-info}/METADATA +3 -2
- {small_fish_gui-1.8.0.dist-info → small_fish_gui-1.9.0.dist-info}/RECORD +20 -18
- {small_fish_gui-1.8.0.dist-info → small_fish_gui-1.9.0.dist-info}/WHEEL +1 -1
- {small_fish_gui-1.8.0.dist-info → small_fish_gui-1.9.0.dist-info}/licenses/LICENSE +0 -0
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"metadata": {},
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"source": [
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"# Testing cell_colocalisation_frame building\n",
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"for _colocalisation._cell_coloc"
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"cell_type": "code",
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"execution_count": 194,
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"metadata": {},
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"outputs": [],
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"source": [
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"import numpy as np\n",
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"import pandas as pd"
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]
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"## Creating spots to test coloc"
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"execution_count": 195,
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"metadata": {},
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"outputs": [],
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"source": [
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"im_shape = (3,50,50)\n",
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"dim = len(im_shape)\n",
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"spot_number = 1000\n",
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"SEED = 1\n",
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"random_gen = np.random.default_rng(seed=SEED)\n",
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"voxel_size = (3,1,1)\n",
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"coloc_distance = 3\n",
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"\n",
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"spots1 = random_gen.integers([0]*dim, im_shape, (spot_number, dim))\n",
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"spots2 = random_gen.integers([0]*dim, im_shape, (spot_number, dim))"
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]
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"## Creating fake cell ids and cluster ids"
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]
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"cell_type": "code",
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"execution_count": 196,
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"outputs": [],
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"source": [
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"CELL_NUMBER = 10\n",
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"cell_ids1 = random_gen.integers(0, CELL_NUMBER, spot_number)\n",
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"cell_ids2 = random_gen.integers(0, CELL_NUMBER, spot_number)\n",
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"\n",
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"CLUSTER_PROPORTION = 0.10\n",
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"cluster_id1 = random_gen.uniform(size=spot_number)\n",
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"cluster_id2 = random_gen.uniform(size=spot_number)\n",
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"\n",
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"cutoff = int(spot_number*CLUSTER_PROPORTION)\n",
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"cluster_id1[:cutoff] = 1 # should not be necessary for test to differentiate clusters\n",
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"cluster_id1[cutoff:] = -1 # free spots\n",
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"\n",
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"cluster_id2[:cutoff] = 1 # should not be necessary for test to differentiate clusters\n",
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"cluster_id2[cutoff:] = -1 # free spots\n"
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"cell_type": "code",
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"execution_count": 197,
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"outputs": [],
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"source": [
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"assert any(cluster_id1 == 1)\n",
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"assert any(cluster_id2 == 1)"
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"metadata": {},
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"source": [
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"## Creating df"
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"execution_count": 198,
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"source": [
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"#Fake names\n",
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"acquisition_id1 = 1\n",
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"acquisition_id2 = 2\n",
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"acquisition_name1 = \"Cy3\"\n",
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"acquisition_name2 = \"Cy5\""
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"### Spots DF"
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"execution_count": 199,
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"data": {
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"text/html": [
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"<div>\n",
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"<style scoped>\n",
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" .dataframe tbody tr th:only-of-type {\n",
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" vertical-align: middle;\n",
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" .dataframe tbody tr th {\n",
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" .dataframe thead th {\n",
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"</style>\n",
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"<table border=\"1\" class=\"dataframe\">\n",
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" <thead>\n",
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" <tr style=\"text-align: right;\">\n",
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" <th></th>\n",
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" <th>spots_id</th>\n",
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" <th>name</th>\n",
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" <th>acquisition_id</th>\n",
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" <th>cell_id</th>\n",
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" <th>cluster_id</th>\n",
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" <th>coordinates</th>\n",
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" <th>is_clustered</th>\n",
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" </tr>\n",
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" </thead>\n",
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" <tbody>\n",
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" <tr>\n",
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" <th>0</th>\n",
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" <td>0</td>\n",
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" <td>Cy3</td>\n",
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" <td>1</td>\n",
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" <td>6</td>\n",
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" <td>1.0</td>\n",
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" <td>(1, 25, 37)</td>\n",
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" <td>True</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <th>1</th>\n",
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" <td>1</td>\n",
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" <td>Cy3</td>\n",
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" <td>1</td>\n",
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" <td>1</td>\n",
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" <td>1.0</td>\n",
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" <td>(2, 1, 7)</td>\n",
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" <td>True</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <th>2</th>\n",
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" <td>2</td>\n",
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" <td>Cy3</td>\n",
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" <td>1</td>\n",
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" <td>7</td>\n",
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" <td>1.0</td>\n",
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" <td>(2, 47, 12)</td>\n",
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" <td>True</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <th>3</th>\n",
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" <td>3</td>\n",
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" <td>Cy3</td>\n",
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" <td>1</td>\n",
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" <td>8</td>\n",
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" <td>1.0</td>\n",
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" <td>(0, 43, 21)</td>\n",
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" <td>True</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <th>4</th>\n",
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" <td>4</td>\n",
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" <td>Cy3</td>\n",
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" <td>1</td>\n",
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" <td>3</td>\n",
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" <td>(0, 41, 12)</td>\n",
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" <td>True</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <th>...</th>\n",
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" <td>...</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <th>1995</th>\n",
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" <td>1995</td>\n",
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" <td>Cy5</td>\n",
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" <td>2</td>\n",
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" <td>4</td>\n",
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" <td>-1.0</td>\n",
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" <td>(2, 8, 41)</td>\n",
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" <td>False</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <th>1996</th>\n",
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" <td>1996</td>\n",
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" <td>Cy5</td>\n",
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" <td>2</td>\n",
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" <td>3</td>\n",
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" <td>(2, 1, 25)</td>\n",
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" <td>False</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <th>1997</th>\n",
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" <td>1997</td>\n",
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" <td>Cy5</td>\n",
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" <td>2</td>\n",
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" <td>4</td>\n",
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" <td>(0, 45, 48)</td>\n",
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" <td>False</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <th>1998</th>\n",
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" <td>1998</td>\n",
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" <td>Cy5</td>\n",
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" <td>2</td>\n",
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" <td>9</td>\n",
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" <td>-1.0</td>\n",
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" <td>(0, 27, 19)</td>\n",
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" <td>False</td>\n",
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" </tr>\n",
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" <tr>\n",
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" <th>1999</th>\n",
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" <td>1999</td>\n",
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" <td>Cy5</td>\n",
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" <td>2</td>\n",
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" <td>(0, 27, 0)</td>\n",
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" <td>False</td>\n",
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" </tr>\n",
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" </tbody>\n",
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"</table>\n",
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"<p>2000 rows × 7 columns</p>\n",
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"</div>"
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],
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"text/plain": [
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" spots_id name acquisition_id cell_id cluster_id coordinates \\\n",
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"0 0 Cy3 1 6 1.0 (1, 25, 37) \n",
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"1 1 Cy3 1 1 1.0 (2, 1, 7) \n",
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"2 2 Cy3 1 7 1.0 (2, 47, 12) \n",
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"3 3 Cy3 1 8 1.0 (0, 43, 21) \n",
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"4 4 Cy3 1 3 1.0 (0, 41, 12) \n",
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"... ... ... ... ... ... ... \n",
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"1995 1995 Cy5 2 4 -1.0 (2, 8, 41) \n",
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"1996 1996 Cy5 2 3 -1.0 (2, 1, 25) \n",
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"1997 1997 Cy5 2 4 -1.0 (0, 45, 48) \n",
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"1998 1998 Cy5 2 9 -1.0 (0, 27, 19) \n",
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"1999 1999 Cy5 2 6 -1.0 (0, 27, 0) \n",
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"\n",
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" is_clustered \n",
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"0 True \n",
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"1 True \n",
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"2 True \n",
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"3 True \n",
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"4 True \n",
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"... ... \n",
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"1995 False \n",
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"[2000 rows x 7 columns]"
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"source": [
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"coordinates = np.concatenate([spots1,spots2],axis=0)\n",
|
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300
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+
"z,y,x = list(zip(*coordinates))\n",
|
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+
"\n",
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302
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+
"spots_df = pd.DataFrame({\n",
|
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303
|
+
" 'spots_id' : np.arange(2*spot_number),\n",
|
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304
|
+
" 'name' : [acquisition_name1] * spot_number + [acquisition_name2] * spot_number,\n",
|
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305
|
+
" 'acquisition_id' : [acquisition_id1] * spot_number + [acquisition_id2] * spot_number,\n",
|
|
306
|
+
" 'cell_id' : np.concatenate([cell_ids1,cell_ids2]),\n",
|
|
307
|
+
" 'cluster_id' : np.concatenate([cluster_id1, cluster_id2]),\n",
|
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308
|
+
" 'z' : z,\n",
|
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309
|
+
" 'y' : y,\n",
|
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310
|
+
" 'x' : x, \n",
|
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311
|
+
"})\n",
|
|
312
|
+
"spots_df['coordinates'] = list(zip(spots_df['z'], spots_df['y'], spots_df['x']))\n",
|
|
313
|
+
"spots_df['is_clustered'] = spots_df['cluster_id'] != -1\n",
|
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314
|
+
"spots_df = spots_df.drop(columns=['z','y','x'])\n",
|
|
315
|
+
"spots_df"
|
|
316
|
+
]
|
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317
|
+
},
|
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|
+
{
|
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319
|
+
"cell_type": "markdown",
|
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320
|
+
"metadata": {},
|
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|
+
"source": [
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|
+
"### Cell Df"
|
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+
]
|
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+
},
|
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|
+
{
|
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|
+
"cell_type": "code",
|
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327
|
+
"execution_count": 200,
|
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|
+
"metadata": {},
|
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329
|
+
"outputs": [
|
|
330
|
+
{
|
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+
"data": {
|
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332
|
+
"text/html": [
|
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333
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+
"<div>\n",
|
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334
|
+
"<style scoped>\n",
|
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335
|
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" .dataframe tbody tr th:only-of-type {\n",
|
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+
" vertical-align: middle;\n",
|
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337
|
+
" }\n",
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|
+
"\n",
|
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339
|
+
" .dataframe tbody tr th {\n",
|
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340
|
+
" vertical-align: top;\n",
|
|
341
|
+
" }\n",
|
|
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|
+
"\n",
|
|
343
|
+
" .dataframe thead th {\n",
|
|
344
|
+
" text-align: right;\n",
|
|
345
|
+
" }\n",
|
|
346
|
+
"</style>\n",
|
|
347
|
+
"<table border=\"1\" class=\"dataframe\">\n",
|
|
348
|
+
" <thead>\n",
|
|
349
|
+
" <tr style=\"text-align: right;\">\n",
|
|
350
|
+
" <th></th>\n",
|
|
351
|
+
" <th>name</th>\n",
|
|
352
|
+
" <th>acquisition_id</th>\n",
|
|
353
|
+
" <th>cell_id</th>\n",
|
|
354
|
+
" <th>all_spots</th>\n",
|
|
355
|
+
" <th>total_rna_number</th>\n",
|
|
356
|
+
" <th>clustered_spots</th>\n",
|
|
357
|
+
" <th>clustered_spot_number</th>\n",
|
|
358
|
+
" <th>free_spots</th>\n",
|
|
359
|
+
" <th>free_spot_number</th>\n",
|
|
360
|
+
" </tr>\n",
|
|
361
|
+
" </thead>\n",
|
|
362
|
+
" <tbody>\n",
|
|
363
|
+
" <tr>\n",
|
|
364
|
+
" <th>0</th>\n",
|
|
365
|
+
" <td>Cy3</td>\n",
|
|
366
|
+
" <td>1</td>\n",
|
|
367
|
+
" <td>0</td>\n",
|
|
368
|
+
" <td>[(0, 1, 43), (2, 48, 4), (1, 1, 35), (0, 29, 4...</td>\n",
|
|
369
|
+
" <td>101</td>\n",
|
|
370
|
+
" <td>[(0, 1, 43), (2, 48, 4), (1, 1, 35), (0, 29, 4...</td>\n",
|
|
371
|
+
" <td>8</td>\n",
|
|
372
|
+
" <td>[(2, 9, 46), (1, 15, 7), (0, 30, 11), (0, 14, ...</td>\n",
|
|
373
|
+
" <td>93</td>\n",
|
|
374
|
+
" </tr>\n",
|
|
375
|
+
" <tr>\n",
|
|
376
|
+
" <th>1</th>\n",
|
|
377
|
+
" <td>Cy3</td>\n",
|
|
378
|
+
" <td>1</td>\n",
|
|
379
|
+
" <td>1</td>\n",
|
|
380
|
+
" <td>[(2, 1, 7), (2, 14, 27), (0, 16, 48), (0, 41, ...</td>\n",
|
|
381
|
+
" <td>110</td>\n",
|
|
382
|
+
" <td>[(2, 1, 7), (2, 14, 27), (0, 16, 48), (0, 41, ...</td>\n",
|
|
383
|
+
" <td>11</td>\n",
|
|
384
|
+
" <td>[(2, 10, 1), (1, 32, 19), (1, 1, 0), (0, 24, 2...</td>\n",
|
|
385
|
+
" <td>99</td>\n",
|
|
386
|
+
" </tr>\n",
|
|
387
|
+
" <tr>\n",
|
|
388
|
+
" <th>2</th>\n",
|
|
389
|
+
" <td>Cy3</td>\n",
|
|
390
|
+
" <td>1</td>\n",
|
|
391
|
+
" <td>2</td>\n",
|
|
392
|
+
" <td>[(1, 32, 27), (1, 9, 23), (2, 15, 23), (2, 48,...</td>\n",
|
|
393
|
+
" <td>93</td>\n",
|
|
394
|
+
" <td>[(1, 32, 27), (1, 9, 23), (2, 15, 23), (2, 48,...</td>\n",
|
|
395
|
+
" <td>9</td>\n",
|
|
396
|
+
" <td>[(0, 48, 36), (1, 48, 48), (2, 33, 37), (1, 19...</td>\n",
|
|
397
|
+
" <td>84</td>\n",
|
|
398
|
+
" </tr>\n",
|
|
399
|
+
" <tr>\n",
|
|
400
|
+
" <th>3</th>\n",
|
|
401
|
+
" <td>Cy3</td>\n",
|
|
402
|
+
" <td>1</td>\n",
|
|
403
|
+
" <td>3</td>\n",
|
|
404
|
+
" <td>[(0, 41, 12), (0, 19, 20), (1, 38, 18), (1, 5,...</td>\n",
|
|
405
|
+
" <td>106</td>\n",
|
|
406
|
+
" <td>[(0, 41, 12), (0, 19, 20), (1, 38, 18), (1, 5,...</td>\n",
|
|
407
|
+
" <td>7</td>\n",
|
|
408
|
+
" <td>[(1, 42, 40), (0, 39, 15), (0, 37, 9), (0, 47,...</td>\n",
|
|
409
|
+
" <td>99</td>\n",
|
|
410
|
+
" </tr>\n",
|
|
411
|
+
" <tr>\n",
|
|
412
|
+
" <th>4</th>\n",
|
|
413
|
+
" <td>Cy3</td>\n",
|
|
414
|
+
" <td>1</td>\n",
|
|
415
|
+
" <td>4</td>\n",
|
|
416
|
+
" <td>[(1, 49, 37), (2, 39, 43), (0, 10, 42), (2, 43...</td>\n",
|
|
417
|
+
" <td>98</td>\n",
|
|
418
|
+
" <td>[(1, 49, 37), (2, 39, 43), (0, 10, 42), (2, 43...</td>\n",
|
|
419
|
+
" <td>11</td>\n",
|
|
420
|
+
" <td>[(1, 45, 19), (1, 1, 46), (0, 40, 37), (0, 10,...</td>\n",
|
|
421
|
+
" <td>87</td>\n",
|
|
422
|
+
" </tr>\n",
|
|
423
|
+
" <tr>\n",
|
|
424
|
+
" <th>5</th>\n",
|
|
425
|
+
" <td>Cy3</td>\n",
|
|
426
|
+
" <td>1</td>\n",
|
|
427
|
+
" <td>5</td>\n",
|
|
428
|
+
" <td>[(0, 21, 23), (0, 15, 35), (2, 17, 43), (0, 11...</td>\n",
|
|
429
|
+
" <td>87</td>\n",
|
|
430
|
+
" <td>[(0, 21, 23), (0, 15, 35)]</td>\n",
|
|
431
|
+
" <td>2</td>\n",
|
|
432
|
+
" <td>[(2, 17, 43), (0, 11, 42), (1, 18, 47), (0, 7,...</td>\n",
|
|
433
|
+
" <td>85</td>\n",
|
|
434
|
+
" </tr>\n",
|
|
435
|
+
" <tr>\n",
|
|
436
|
+
" <th>6</th>\n",
|
|
437
|
+
" <td>Cy3</td>\n",
|
|
438
|
+
" <td>1</td>\n",
|
|
439
|
+
" <td>6</td>\n",
|
|
440
|
+
" <td>[(1, 25, 37), (2, 16, 22), (0, 22, 48), (2, 10...</td>\n",
|
|
441
|
+
" <td>106</td>\n",
|
|
442
|
+
" <td>[(1, 25, 37), (2, 16, 22), (0, 22, 48), (2, 10...</td>\n",
|
|
443
|
+
" <td>10</td>\n",
|
|
444
|
+
" <td>[(1, 34, 47), (0, 22, 23), (2, 39, 12), (1, 42...</td>\n",
|
|
445
|
+
" <td>96</td>\n",
|
|
446
|
+
" </tr>\n",
|
|
447
|
+
" <tr>\n",
|
|
448
|
+
" <th>7</th>\n",
|
|
449
|
+
" <td>Cy3</td>\n",
|
|
450
|
+
" <td>1</td>\n",
|
|
451
|
+
" <td>7</td>\n",
|
|
452
|
+
" <td>[(2, 47, 12), (2, 41, 26), (1, 3, 22), (0, 7, ...</td>\n",
|
|
453
|
+
" <td>91</td>\n",
|
|
454
|
+
" <td>[(2, 47, 12), (2, 41, 26), (1, 3, 22), (0, 7, ...</td>\n",
|
|
455
|
+
" <td>12</td>\n",
|
|
456
|
+
" <td>[(1, 36, 14), (1, 47, 11), (0, 31, 40), (1, 28...</td>\n",
|
|
457
|
+
" <td>79</td>\n",
|
|
458
|
+
" </tr>\n",
|
|
459
|
+
" <tr>\n",
|
|
460
|
+
" <th>8</th>\n",
|
|
461
|
+
" <td>Cy3</td>\n",
|
|
462
|
+
" <td>1</td>\n",
|
|
463
|
+
" <td>8</td>\n",
|
|
464
|
+
" <td>[(0, 43, 21), (1, 5, 49), (2, 13, 36), (1, 38,...</td>\n",
|
|
465
|
+
" <td>108</td>\n",
|
|
466
|
+
" <td>[(0, 43, 21), (1, 5, 49), (2, 13, 36), (1, 38,...</td>\n",
|
|
467
|
+
" <td>13</td>\n",
|
|
468
|
+
" <td>[(0, 42, 29), (2, 30, 26), (1, 49, 19), (2, 19...</td>\n",
|
|
469
|
+
" <td>95</td>\n",
|
|
470
|
+
" </tr>\n",
|
|
471
|
+
" <tr>\n",
|
|
472
|
+
" <th>9</th>\n",
|
|
473
|
+
" <td>Cy3</td>\n",
|
|
474
|
+
" <td>1</td>\n",
|
|
475
|
+
" <td>9</td>\n",
|
|
476
|
+
" <td>[(2, 6, 15), (0, 0, 37), (0, 14, 24), (0, 21, ...</td>\n",
|
|
477
|
+
" <td>100</td>\n",
|
|
478
|
+
" <td>[(2, 6, 15), (0, 0, 37), (0, 14, 24), (0, 21, ...</td>\n",
|
|
479
|
+
" <td>17</td>\n",
|
|
480
|
+
" <td>[(0, 48, 24), (1, 37, 44), (1, 35, 10), (1, 49...</td>\n",
|
|
481
|
+
" <td>83</td>\n",
|
|
482
|
+
" </tr>\n",
|
|
483
|
+
" <tr>\n",
|
|
484
|
+
" <th>10</th>\n",
|
|
485
|
+
" <td>Cy5</td>\n",
|
|
486
|
+
" <td>2</td>\n",
|
|
487
|
+
" <td>0</td>\n",
|
|
488
|
+
" <td>[(2, 39, 9), (0, 40, 29), (1, 12, 33), (1, 31,...</td>\n",
|
|
489
|
+
" <td>99</td>\n",
|
|
490
|
+
" <td>[(2, 39, 9), (0, 40, 29), (1, 12, 33), (1, 31,...</td>\n",
|
|
491
|
+
" <td>8</td>\n",
|
|
492
|
+
" <td>[(0, 38, 40), (0, 1, 31), (1, 44, 0), (1, 27, ...</td>\n",
|
|
493
|
+
" <td>91</td>\n",
|
|
494
|
+
" </tr>\n",
|
|
495
|
+
" <tr>\n",
|
|
496
|
+
" <th>11</th>\n",
|
|
497
|
+
" <td>Cy5</td>\n",
|
|
498
|
+
" <td>2</td>\n",
|
|
499
|
+
" <td>1</td>\n",
|
|
500
|
+
" <td>[(1, 28, 15), (2, 14, 39), (1, 15, 45), (1, 44...</td>\n",
|
|
501
|
+
" <td>89</td>\n",
|
|
502
|
+
" <td>[(1, 28, 15), (2, 14, 39), (1, 15, 45), (1, 44...</td>\n",
|
|
503
|
+
" <td>7</td>\n",
|
|
504
|
+
" <td>[(0, 20, 39), (0, 43, 45), (2, 17, 32), (2, 35...</td>\n",
|
|
505
|
+
" <td>82</td>\n",
|
|
506
|
+
" </tr>\n",
|
|
507
|
+
" <tr>\n",
|
|
508
|
+
" <th>12</th>\n",
|
|
509
|
+
" <td>Cy5</td>\n",
|
|
510
|
+
" <td>2</td>\n",
|
|
511
|
+
" <td>2</td>\n",
|
|
512
|
+
" <td>[(2, 25, 41), (0, 47, 29), (1, 15, 11), (0, 19...</td>\n",
|
|
513
|
+
" <td>111</td>\n",
|
|
514
|
+
" <td>[(2, 25, 41), (0, 47, 29), (1, 15, 11), (0, 19...</td>\n",
|
|
515
|
+
" <td>12</td>\n",
|
|
516
|
+
" <td>[(2, 10, 7), (0, 27, 49), (0, 13, 11), (2, 1, ...</td>\n",
|
|
517
|
+
" <td>99</td>\n",
|
|
518
|
+
" </tr>\n",
|
|
519
|
+
" <tr>\n",
|
|
520
|
+
" <th>13</th>\n",
|
|
521
|
+
" <td>Cy5</td>\n",
|
|
522
|
+
" <td>2</td>\n",
|
|
523
|
+
" <td>3</td>\n",
|
|
524
|
+
" <td>[(2, 12, 49), (2, 11, 3), (1, 49, 34), (2, 18,...</td>\n",
|
|
525
|
+
" <td>92</td>\n",
|
|
526
|
+
" <td>[(2, 12, 49), (2, 11, 3), (1, 49, 34), (2, 18,...</td>\n",
|
|
527
|
+
" <td>10</td>\n",
|
|
528
|
+
" <td>[(2, 3, 20), (0, 0, 18), (0, 22, 16), (0, 23, ...</td>\n",
|
|
529
|
+
" <td>82</td>\n",
|
|
530
|
+
" </tr>\n",
|
|
531
|
+
" <tr>\n",
|
|
532
|
+
" <th>14</th>\n",
|
|
533
|
+
" <td>Cy5</td>\n",
|
|
534
|
+
" <td>2</td>\n",
|
|
535
|
+
" <td>4</td>\n",
|
|
536
|
+
" <td>[(1, 31, 16), (0, 2, 46), (0, 10, 33), (2, 36,...</td>\n",
|
|
537
|
+
" <td>97</td>\n",
|
|
538
|
+
" <td>[(1, 31, 16), (0, 2, 46), (0, 10, 33), (2, 36,...</td>\n",
|
|
539
|
+
" <td>8</td>\n",
|
|
540
|
+
" <td>[(1, 45, 8), (0, 16, 43), (0, 14, 17), (1, 39,...</td>\n",
|
|
541
|
+
" <td>89</td>\n",
|
|
542
|
+
" </tr>\n",
|
|
543
|
+
" <tr>\n",
|
|
544
|
+
" <th>15</th>\n",
|
|
545
|
+
" <td>Cy5</td>\n",
|
|
546
|
+
" <td>2</td>\n",
|
|
547
|
+
" <td>5</td>\n",
|
|
548
|
+
" <td>[(2, 30, 35), (0, 24, 18), (1, 14, 15), (2, 40...</td>\n",
|
|
549
|
+
" <td>95</td>\n",
|
|
550
|
+
" <td>[(2, 30, 35), (0, 24, 18), (1, 14, 15), (2, 40...</td>\n",
|
|
551
|
+
" <td>11</td>\n",
|
|
552
|
+
" <td>[(1, 40, 7), (0, 19, 47), (0, 21, 21), (1, 21,...</td>\n",
|
|
553
|
+
" <td>84</td>\n",
|
|
554
|
+
" </tr>\n",
|
|
555
|
+
" <tr>\n",
|
|
556
|
+
" <th>16</th>\n",
|
|
557
|
+
" <td>Cy5</td>\n",
|
|
558
|
+
" <td>2</td>\n",
|
|
559
|
+
" <td>6</td>\n",
|
|
560
|
+
" <td>[(1, 30, 27), (0, 23, 5), (0, 14, 29), (2, 30,...</td>\n",
|
|
561
|
+
" <td>115</td>\n",
|
|
562
|
+
" <td>[(1, 30, 27), (0, 23, 5), (0, 14, 29), (2, 30,...</td>\n",
|
|
563
|
+
" <td>13</td>\n",
|
|
564
|
+
" <td>[(1, 14, 10), (0, 48, 23), (1, 20, 10), (2, 16...</td>\n",
|
|
565
|
+
" <td>102</td>\n",
|
|
566
|
+
" </tr>\n",
|
|
567
|
+
" <tr>\n",
|
|
568
|
+
" <th>17</th>\n",
|
|
569
|
+
" <td>Cy5</td>\n",
|
|
570
|
+
" <td>2</td>\n",
|
|
571
|
+
" <td>7</td>\n",
|
|
572
|
+
" <td>[(2, 13, 25), (1, 29, 49), (2, 22, 44), (1, 39...</td>\n",
|
|
573
|
+
" <td>102</td>\n",
|
|
574
|
+
" <td>[(2, 13, 25), (1, 29, 49), (2, 22, 44), (1, 39...</td>\n",
|
|
575
|
+
" <td>10</td>\n",
|
|
576
|
+
" <td>[(2, 15, 14), (1, 34, 47), (2, 17, 9), (1, 3, ...</td>\n",
|
|
577
|
+
" <td>92</td>\n",
|
|
578
|
+
" </tr>\n",
|
|
579
|
+
" <tr>\n",
|
|
580
|
+
" <th>18</th>\n",
|
|
581
|
+
" <td>Cy5</td>\n",
|
|
582
|
+
" <td>2</td>\n",
|
|
583
|
+
" <td>8</td>\n",
|
|
584
|
+
" <td>[(2, 34, 13), (1, 44, 24), (0, 44, 49), (1, 19...</td>\n",
|
|
585
|
+
" <td>91</td>\n",
|
|
586
|
+
" <td>[(2, 34, 13), (1, 44, 24), (0, 44, 49)]</td>\n",
|
|
587
|
+
" <td>3</td>\n",
|
|
588
|
+
" <td>[(1, 19, 32), (0, 46, 40), (1, 7, 17), (2, 11,...</td>\n",
|
|
589
|
+
" <td>88</td>\n",
|
|
590
|
+
" </tr>\n",
|
|
591
|
+
" <tr>\n",
|
|
592
|
+
" <th>19</th>\n",
|
|
593
|
+
" <td>Cy5</td>\n",
|
|
594
|
+
" <td>2</td>\n",
|
|
595
|
+
" <td>9</td>\n",
|
|
596
|
+
" <td>[(2, 21, 4), (1, 2, 18), (1, 10, 0), (0, 34, 0...</td>\n",
|
|
597
|
+
" <td>109</td>\n",
|
|
598
|
+
" <td>[(2, 21, 4), (1, 2, 18), (1, 10, 0), (0, 34, 0...</td>\n",
|
|
599
|
+
" <td>18</td>\n",
|
|
600
|
+
" <td>[(1, 28, 35), (2, 27, 28), (1, 16, 32), (2, 22...</td>\n",
|
|
601
|
+
" <td>91</td>\n",
|
|
602
|
+
" </tr>\n",
|
|
603
|
+
" </tbody>\n",
|
|
604
|
+
"</table>\n",
|
|
605
|
+
"</div>"
|
|
606
|
+
],
|
|
607
|
+
"text/plain": [
|
|
608
|
+
" name acquisition_id cell_id \\\n",
|
|
609
|
+
"0 Cy3 1 0 \n",
|
|
610
|
+
"1 Cy3 1 1 \n",
|
|
611
|
+
"2 Cy3 1 2 \n",
|
|
612
|
+
"3 Cy3 1 3 \n",
|
|
613
|
+
"4 Cy3 1 4 \n",
|
|
614
|
+
"5 Cy3 1 5 \n",
|
|
615
|
+
"6 Cy3 1 6 \n",
|
|
616
|
+
"7 Cy3 1 7 \n",
|
|
617
|
+
"8 Cy3 1 8 \n",
|
|
618
|
+
"9 Cy3 1 9 \n",
|
|
619
|
+
"10 Cy5 2 0 \n",
|
|
620
|
+
"11 Cy5 2 1 \n",
|
|
621
|
+
"12 Cy5 2 2 \n",
|
|
622
|
+
"13 Cy5 2 3 \n",
|
|
623
|
+
"14 Cy5 2 4 \n",
|
|
624
|
+
"15 Cy5 2 5 \n",
|
|
625
|
+
"16 Cy5 2 6 \n",
|
|
626
|
+
"17 Cy5 2 7 \n",
|
|
627
|
+
"18 Cy5 2 8 \n",
|
|
628
|
+
"19 Cy5 2 9 \n",
|
|
629
|
+
"\n",
|
|
630
|
+
" all_spots total_rna_number \\\n",
|
|
631
|
+
"0 [(0, 1, 43), (2, 48, 4), (1, 1, 35), (0, 29, 4... 101 \n",
|
|
632
|
+
"1 [(2, 1, 7), (2, 14, 27), (0, 16, 48), (0, 41, ... 110 \n",
|
|
633
|
+
"2 [(1, 32, 27), (1, 9, 23), (2, 15, 23), (2, 48,... 93 \n",
|
|
634
|
+
"3 [(0, 41, 12), (0, 19, 20), (1, 38, 18), (1, 5,... 106 \n",
|
|
635
|
+
"4 [(1, 49, 37), (2, 39, 43), (0, 10, 42), (2, 43... 98 \n",
|
|
636
|
+
"5 [(0, 21, 23), (0, 15, 35), (2, 17, 43), (0, 11... 87 \n",
|
|
637
|
+
"6 [(1, 25, 37), (2, 16, 22), (0, 22, 48), (2, 10... 106 \n",
|
|
638
|
+
"7 [(2, 47, 12), (2, 41, 26), (1, 3, 22), (0, 7, ... 91 \n",
|
|
639
|
+
"8 [(0, 43, 21), (1, 5, 49), (2, 13, 36), (1, 38,... 108 \n",
|
|
640
|
+
"9 [(2, 6, 15), (0, 0, 37), (0, 14, 24), (0, 21, ... 100 \n",
|
|
641
|
+
"10 [(2, 39, 9), (0, 40, 29), (1, 12, 33), (1, 31,... 99 \n",
|
|
642
|
+
"11 [(1, 28, 15), (2, 14, 39), (1, 15, 45), (1, 44... 89 \n",
|
|
643
|
+
"12 [(2, 25, 41), (0, 47, 29), (1, 15, 11), (0, 19... 111 \n",
|
|
644
|
+
"13 [(2, 12, 49), (2, 11, 3), (1, 49, 34), (2, 18,... 92 \n",
|
|
645
|
+
"14 [(1, 31, 16), (0, 2, 46), (0, 10, 33), (2, 36,... 97 \n",
|
|
646
|
+
"15 [(2, 30, 35), (0, 24, 18), (1, 14, 15), (2, 40... 95 \n",
|
|
647
|
+
"16 [(1, 30, 27), (0, 23, 5), (0, 14, 29), (2, 30,... 115 \n",
|
|
648
|
+
"17 [(2, 13, 25), (1, 29, 49), (2, 22, 44), (1, 39... 102 \n",
|
|
649
|
+
"18 [(2, 34, 13), (1, 44, 24), (0, 44, 49), (1, 19... 91 \n",
|
|
650
|
+
"19 [(2, 21, 4), (1, 2, 18), (1, 10, 0), (0, 34, 0... 109 \n",
|
|
651
|
+
"\n",
|
|
652
|
+
" clustered_spots clustered_spot_number \\\n",
|
|
653
|
+
"0 [(0, 1, 43), (2, 48, 4), (1, 1, 35), (0, 29, 4... 8 \n",
|
|
654
|
+
"1 [(2, 1, 7), (2, 14, 27), (0, 16, 48), (0, 41, ... 11 \n",
|
|
655
|
+
"2 [(1, 32, 27), (1, 9, 23), (2, 15, 23), (2, 48,... 9 \n",
|
|
656
|
+
"3 [(0, 41, 12), (0, 19, 20), (1, 38, 18), (1, 5,... 7 \n",
|
|
657
|
+
"4 [(1, 49, 37), (2, 39, 43), (0, 10, 42), (2, 43... 11 \n",
|
|
658
|
+
"5 [(0, 21, 23), (0, 15, 35)] 2 \n",
|
|
659
|
+
"6 [(1, 25, 37), (2, 16, 22), (0, 22, 48), (2, 10... 10 \n",
|
|
660
|
+
"7 [(2, 47, 12), (2, 41, 26), (1, 3, 22), (0, 7, ... 12 \n",
|
|
661
|
+
"8 [(0, 43, 21), (1, 5, 49), (2, 13, 36), (1, 38,... 13 \n",
|
|
662
|
+
"9 [(2, 6, 15), (0, 0, 37), (0, 14, 24), (0, 21, ... 17 \n",
|
|
663
|
+
"10 [(2, 39, 9), (0, 40, 29), (1, 12, 33), (1, 31,... 8 \n",
|
|
664
|
+
"11 [(1, 28, 15), (2, 14, 39), (1, 15, 45), (1, 44... 7 \n",
|
|
665
|
+
"12 [(2, 25, 41), (0, 47, 29), (1, 15, 11), (0, 19... 12 \n",
|
|
666
|
+
"13 [(2, 12, 49), (2, 11, 3), (1, 49, 34), (2, 18,... 10 \n",
|
|
667
|
+
"14 [(1, 31, 16), (0, 2, 46), (0, 10, 33), (2, 36,... 8 \n",
|
|
668
|
+
"15 [(2, 30, 35), (0, 24, 18), (1, 14, 15), (2, 40... 11 \n",
|
|
669
|
+
"16 [(1, 30, 27), (0, 23, 5), (0, 14, 29), (2, 30,... 13 \n",
|
|
670
|
+
"17 [(2, 13, 25), (1, 29, 49), (2, 22, 44), (1, 39... 10 \n",
|
|
671
|
+
"18 [(2, 34, 13), (1, 44, 24), (0, 44, 49)] 3 \n",
|
|
672
|
+
"19 [(2, 21, 4), (1, 2, 18), (1, 10, 0), (0, 34, 0... 18 \n",
|
|
673
|
+
"\n",
|
|
674
|
+
" free_spots free_spot_number \n",
|
|
675
|
+
"0 [(2, 9, 46), (1, 15, 7), (0, 30, 11), (0, 14, ... 93 \n",
|
|
676
|
+
"1 [(2, 10, 1), (1, 32, 19), (1, 1, 0), (0, 24, 2... 99 \n",
|
|
677
|
+
"2 [(0, 48, 36), (1, 48, 48), (2, 33, 37), (1, 19... 84 \n",
|
|
678
|
+
"3 [(1, 42, 40), (0, 39, 15), (0, 37, 9), (0, 47,... 99 \n",
|
|
679
|
+
"4 [(1, 45, 19), (1, 1, 46), (0, 40, 37), (0, 10,... 87 \n",
|
|
680
|
+
"5 [(2, 17, 43), (0, 11, 42), (1, 18, 47), (0, 7,... 85 \n",
|
|
681
|
+
"6 [(1, 34, 47), (0, 22, 23), (2, 39, 12), (1, 42... 96 \n",
|
|
682
|
+
"7 [(1, 36, 14), (1, 47, 11), (0, 31, 40), (1, 28... 79 \n",
|
|
683
|
+
"8 [(0, 42, 29), (2, 30, 26), (1, 49, 19), (2, 19... 95 \n",
|
|
684
|
+
"9 [(0, 48, 24), (1, 37, 44), (1, 35, 10), (1, 49... 83 \n",
|
|
685
|
+
"10 [(0, 38, 40), (0, 1, 31), (1, 44, 0), (1, 27, ... 91 \n",
|
|
686
|
+
"11 [(0, 20, 39), (0, 43, 45), (2, 17, 32), (2, 35... 82 \n",
|
|
687
|
+
"12 [(2, 10, 7), (0, 27, 49), (0, 13, 11), (2, 1, ... 99 \n",
|
|
688
|
+
"13 [(2, 3, 20), (0, 0, 18), (0, 22, 16), (0, 23, ... 82 \n",
|
|
689
|
+
"14 [(1, 45, 8), (0, 16, 43), (0, 14, 17), (1, 39,... 89 \n",
|
|
690
|
+
"15 [(1, 40, 7), (0, 19, 47), (0, 21, 21), (1, 21,... 84 \n",
|
|
691
|
+
"16 [(1, 14, 10), (0, 48, 23), (1, 20, 10), (2, 16... 102 \n",
|
|
692
|
+
"17 [(2, 15, 14), (1, 34, 47), (2, 17, 9), (1, 3, ... 92 \n",
|
|
693
|
+
"18 [(1, 19, 32), (0, 46, 40), (1, 7, 17), (2, 11,... 88 \n",
|
|
694
|
+
"19 [(1, 28, 35), (2, 27, 28), (1, 16, 32), (2, 22... 91 "
|
|
695
|
+
]
|
|
696
|
+
},
|
|
697
|
+
"execution_count": 200,
|
|
698
|
+
"metadata": {},
|
|
699
|
+
"output_type": "execute_result"
|
|
700
|
+
}
|
|
701
|
+
],
|
|
702
|
+
"source": [
|
|
703
|
+
"Cell_df_all = spots_df.groupby(['name','acquisition_id','cell_id']).agg({\n",
|
|
704
|
+
" 'coordinates' : list,\n",
|
|
705
|
+
"}).reset_index(drop=False)\n",
|
|
706
|
+
"\n",
|
|
707
|
+
"Cell_df_clustered = spots_df[spots_df['is_clustered']].groupby(['name','acquisition_id','cell_id']).agg({\n",
|
|
708
|
+
" 'coordinates' : list,\n",
|
|
709
|
+
"}).reset_index(drop=False)\n",
|
|
710
|
+
"\n",
|
|
711
|
+
"Cell_df_free = spots_df[~spots_df['is_clustered']].groupby(['name','acquisition_id','cell_id']).agg({\n",
|
|
712
|
+
" 'coordinates' : list,\n",
|
|
713
|
+
"}).reset_index(drop=False)\n",
|
|
714
|
+
"\n",
|
|
715
|
+
"Cell_df_all['total_rna_number'] = Cell_df_all['coordinates'].apply(len)\n",
|
|
716
|
+
"Cell_df_clustered['total_rna_number'] = Cell_df_clustered['coordinates'].apply(len)\n",
|
|
717
|
+
"Cell_df_free['total_rna_number'] = Cell_df_free['coordinates'].apply(len)\n",
|
|
718
|
+
"\n",
|
|
719
|
+
"INDEX_KEYS = ['name','acquisition_id','cell_id']\n",
|
|
720
|
+
"\n",
|
|
721
|
+
"Cell_df_all = Cell_df_all.rename(columns={'coordinates' : 'all_spots'}).set_index(INDEX_KEYS)\n",
|
|
722
|
+
"Cell_df_clustered = Cell_df_clustered.rename(columns={'coordinates' : 'clustered_spots', 'total_rna_number' : 'clustered_spot_number'}).set_index(INDEX_KEYS)\n",
|
|
723
|
+
"Cell_df_free = Cell_df_free.rename(columns={'coordinates' : 'free_spots', 'total_rna_number' : 'free_spot_number'}).set_index(INDEX_KEYS)\n",
|
|
724
|
+
"\n",
|
|
725
|
+
"Cell_df = Cell_df_all.join([Cell_df_clustered, Cell_df_free]).reset_index(drop=False)\n",
|
|
726
|
+
"Cell_df"
|
|
727
|
+
]
|
|
728
|
+
},
|
|
729
|
+
{
|
|
730
|
+
"cell_type": "markdown",
|
|
731
|
+
"metadata": {},
|
|
732
|
+
"source": [
|
|
733
|
+
"### colocalisation_df"
|
|
734
|
+
]
|
|
735
|
+
},
|
|
736
|
+
{
|
|
737
|
+
"cell_type": "code",
|
|
738
|
+
"execution_count": 201,
|
|
739
|
+
"metadata": {},
|
|
740
|
+
"outputs": [
|
|
741
|
+
{
|
|
742
|
+
"data": {
|
|
743
|
+
"text/html": [
|
|
744
|
+
"<div>\n",
|
|
745
|
+
"<style scoped>\n",
|
|
746
|
+
" .dataframe tbody tr th:only-of-type {\n",
|
|
747
|
+
" vertical-align: middle;\n",
|
|
748
|
+
" }\n",
|
|
749
|
+
"\n",
|
|
750
|
+
" .dataframe tbody tr th {\n",
|
|
751
|
+
" vertical-align: top;\n",
|
|
752
|
+
" }\n",
|
|
753
|
+
"\n",
|
|
754
|
+
" .dataframe thead tr th {\n",
|
|
755
|
+
" text-align: left;\n",
|
|
756
|
+
" }\n",
|
|
757
|
+
"\n",
|
|
758
|
+
" .dataframe thead tr:last-of-type th {\n",
|
|
759
|
+
" text-align: right;\n",
|
|
760
|
+
" }\n",
|
|
761
|
+
"</style>\n",
|
|
762
|
+
"<table border=\"1\" class=\"dataframe\">\n",
|
|
763
|
+
" <thead>\n",
|
|
764
|
+
" <tr>\n",
|
|
765
|
+
" <th></th>\n",
|
|
766
|
+
" <th colspan=\"2\" halign=\"left\">all_spots</th>\n",
|
|
767
|
+
" <th colspan=\"2\" halign=\"left\">clustered_spots</th>\n",
|
|
768
|
+
" <th colspan=\"2\" halign=\"left\">free_spots</th>\n",
|
|
769
|
+
" <th colspan=\"2\" halign=\"left\">total_rna_number</th>\n",
|
|
770
|
+
" </tr>\n",
|
|
771
|
+
" <tr>\n",
|
|
772
|
+
" <th>name</th>\n",
|
|
773
|
+
" <th>Cy3</th>\n",
|
|
774
|
+
" <th>Cy5</th>\n",
|
|
775
|
+
" <th>Cy3</th>\n",
|
|
776
|
+
" <th>Cy5</th>\n",
|
|
777
|
+
" <th>Cy3</th>\n",
|
|
778
|
+
" <th>Cy5</th>\n",
|
|
779
|
+
" <th>Cy3</th>\n",
|
|
780
|
+
" <th>Cy5</th>\n",
|
|
781
|
+
" </tr>\n",
|
|
782
|
+
" <tr>\n",
|
|
783
|
+
" <th>acquisition_id</th>\n",
|
|
784
|
+
" <th>1</th>\n",
|
|
785
|
+
" <th>2</th>\n",
|
|
786
|
+
" <th>1</th>\n",
|
|
787
|
+
" <th>2</th>\n",
|
|
788
|
+
" <th>1</th>\n",
|
|
789
|
+
" <th>2</th>\n",
|
|
790
|
+
" <th>1</th>\n",
|
|
791
|
+
" <th>2</th>\n",
|
|
792
|
+
" </tr>\n",
|
|
793
|
+
" <tr>\n",
|
|
794
|
+
" <th>cell_id</th>\n",
|
|
795
|
+
" <th></th>\n",
|
|
796
|
+
" <th></th>\n",
|
|
797
|
+
" <th></th>\n",
|
|
798
|
+
" <th></th>\n",
|
|
799
|
+
" <th></th>\n",
|
|
800
|
+
" <th></th>\n",
|
|
801
|
+
" <th></th>\n",
|
|
802
|
+
" <th></th>\n",
|
|
803
|
+
" </tr>\n",
|
|
804
|
+
" </thead>\n",
|
|
805
|
+
" <tbody>\n",
|
|
806
|
+
" <tr>\n",
|
|
807
|
+
" <th>0</th>\n",
|
|
808
|
+
" <td>[(0, 1, 43), (2, 48, 4), (1, 1, 35), (0, 29, 4...</td>\n",
|
|
809
|
+
" <td>[(2, 39, 9), (0, 40, 29), (1, 12, 33), (1, 31,...</td>\n",
|
|
810
|
+
" <td>[(0, 1, 43), (2, 48, 4), (1, 1, 35), (0, 29, 4...</td>\n",
|
|
811
|
+
" <td>[(2, 39, 9), (0, 40, 29), (1, 12, 33), (1, 31,...</td>\n",
|
|
812
|
+
" <td>[(2, 9, 46), (1, 15, 7), (0, 30, 11), (0, 14, ...</td>\n",
|
|
813
|
+
" <td>[(0, 38, 40), (0, 1, 31), (1, 44, 0), (1, 27, ...</td>\n",
|
|
814
|
+
" <td>101</td>\n",
|
|
815
|
+
" <td>99</td>\n",
|
|
816
|
+
" </tr>\n",
|
|
817
|
+
" <tr>\n",
|
|
818
|
+
" <th>1</th>\n",
|
|
819
|
+
" <td>[(2, 1, 7), (2, 14, 27), (0, 16, 48), (0, 41, ...</td>\n",
|
|
820
|
+
" <td>[(1, 28, 15), (2, 14, 39), (1, 15, 45), (1, 44...</td>\n",
|
|
821
|
+
" <td>[(2, 1, 7), (2, 14, 27), (0, 16, 48), (0, 41, ...</td>\n",
|
|
822
|
+
" <td>[(1, 28, 15), (2, 14, 39), (1, 15, 45), (1, 44...</td>\n",
|
|
823
|
+
" <td>[(2, 10, 1), (1, 32, 19), (1, 1, 0), (0, 24, 2...</td>\n",
|
|
824
|
+
" <td>[(0, 20, 39), (0, 43, 45), (2, 17, 32), (2, 35...</td>\n",
|
|
825
|
+
" <td>110</td>\n",
|
|
826
|
+
" <td>89</td>\n",
|
|
827
|
+
" </tr>\n",
|
|
828
|
+
" <tr>\n",
|
|
829
|
+
" <th>2</th>\n",
|
|
830
|
+
" <td>[(1, 32, 27), (1, 9, 23), (2, 15, 23), (2, 48,...</td>\n",
|
|
831
|
+
" <td>[(2, 25, 41), (0, 47, 29), (1, 15, 11), (0, 19...</td>\n",
|
|
832
|
+
" <td>[(1, 32, 27), (1, 9, 23), (2, 15, 23), (2, 48,...</td>\n",
|
|
833
|
+
" <td>[(2, 25, 41), (0, 47, 29), (1, 15, 11), (0, 19...</td>\n",
|
|
834
|
+
" <td>[(0, 48, 36), (1, 48, 48), (2, 33, 37), (1, 19...</td>\n",
|
|
835
|
+
" <td>[(2, 10, 7), (0, 27, 49), (0, 13, 11), (2, 1, ...</td>\n",
|
|
836
|
+
" <td>93</td>\n",
|
|
837
|
+
" <td>111</td>\n",
|
|
838
|
+
" </tr>\n",
|
|
839
|
+
" <tr>\n",
|
|
840
|
+
" <th>3</th>\n",
|
|
841
|
+
" <td>[(0, 41, 12), (0, 19, 20), (1, 38, 18), (1, 5,...</td>\n",
|
|
842
|
+
" <td>[(2, 12, 49), (2, 11, 3), (1, 49, 34), (2, 18,...</td>\n",
|
|
843
|
+
" <td>[(0, 41, 12), (0, 19, 20), (1, 38, 18), (1, 5,...</td>\n",
|
|
844
|
+
" <td>[(2, 12, 49), (2, 11, 3), (1, 49, 34), (2, 18,...</td>\n",
|
|
845
|
+
" <td>[(1, 42, 40), (0, 39, 15), (0, 37, 9), (0, 47,...</td>\n",
|
|
846
|
+
" <td>[(2, 3, 20), (0, 0, 18), (0, 22, 16), (0, 23, ...</td>\n",
|
|
847
|
+
" <td>106</td>\n",
|
|
848
|
+
" <td>92</td>\n",
|
|
849
|
+
" </tr>\n",
|
|
850
|
+
" <tr>\n",
|
|
851
|
+
" <th>4</th>\n",
|
|
852
|
+
" <td>[(1, 49, 37), (2, 39, 43), (0, 10, 42), (2, 43...</td>\n",
|
|
853
|
+
" <td>[(1, 31, 16), (0, 2, 46), (0, 10, 33), (2, 36,...</td>\n",
|
|
854
|
+
" <td>[(1, 49, 37), (2, 39, 43), (0, 10, 42), (2, 43...</td>\n",
|
|
855
|
+
" <td>[(1, 31, 16), (0, 2, 46), (0, 10, 33), (2, 36,...</td>\n",
|
|
856
|
+
" <td>[(1, 45, 19), (1, 1, 46), (0, 40, 37), (0, 10,...</td>\n",
|
|
857
|
+
" <td>[(1, 45, 8), (0, 16, 43), (0, 14, 17), (1, 39,...</td>\n",
|
|
858
|
+
" <td>98</td>\n",
|
|
859
|
+
" <td>97</td>\n",
|
|
860
|
+
" </tr>\n",
|
|
861
|
+
" <tr>\n",
|
|
862
|
+
" <th>5</th>\n",
|
|
863
|
+
" <td>[(0, 21, 23), (0, 15, 35), (2, 17, 43), (0, 11...</td>\n",
|
|
864
|
+
" <td>[(2, 30, 35), (0, 24, 18), (1, 14, 15), (2, 40...</td>\n",
|
|
865
|
+
" <td>[(0, 21, 23), (0, 15, 35)]</td>\n",
|
|
866
|
+
" <td>[(2, 30, 35), (0, 24, 18), (1, 14, 15), (2, 40...</td>\n",
|
|
867
|
+
" <td>[(2, 17, 43), (0, 11, 42), (1, 18, 47), (0, 7,...</td>\n",
|
|
868
|
+
" <td>[(1, 40, 7), (0, 19, 47), (0, 21, 21), (1, 21,...</td>\n",
|
|
869
|
+
" <td>87</td>\n",
|
|
870
|
+
" <td>95</td>\n",
|
|
871
|
+
" </tr>\n",
|
|
872
|
+
" <tr>\n",
|
|
873
|
+
" <th>6</th>\n",
|
|
874
|
+
" <td>[(1, 25, 37), (2, 16, 22), (0, 22, 48), (2, 10...</td>\n",
|
|
875
|
+
" <td>[(1, 30, 27), (0, 23, 5), (0, 14, 29), (2, 30,...</td>\n",
|
|
876
|
+
" <td>[(1, 25, 37), (2, 16, 22), (0, 22, 48), (2, 10...</td>\n",
|
|
877
|
+
" <td>[(1, 30, 27), (0, 23, 5), (0, 14, 29), (2, 30,...</td>\n",
|
|
878
|
+
" <td>[(1, 34, 47), (0, 22, 23), (2, 39, 12), (1, 42...</td>\n",
|
|
879
|
+
" <td>[(1, 14, 10), (0, 48, 23), (1, 20, 10), (2, 16...</td>\n",
|
|
880
|
+
" <td>106</td>\n",
|
|
881
|
+
" <td>115</td>\n",
|
|
882
|
+
" </tr>\n",
|
|
883
|
+
" <tr>\n",
|
|
884
|
+
" <th>7</th>\n",
|
|
885
|
+
" <td>[(2, 47, 12), (2, 41, 26), (1, 3, 22), (0, 7, ...</td>\n",
|
|
886
|
+
" <td>[(2, 13, 25), (1, 29, 49), (2, 22, 44), (1, 39...</td>\n",
|
|
887
|
+
" <td>[(2, 47, 12), (2, 41, 26), (1, 3, 22), (0, 7, ...</td>\n",
|
|
888
|
+
" <td>[(2, 13, 25), (1, 29, 49), (2, 22, 44), (1, 39...</td>\n",
|
|
889
|
+
" <td>[(1, 36, 14), (1, 47, 11), (0, 31, 40), (1, 28...</td>\n",
|
|
890
|
+
" <td>[(2, 15, 14), (1, 34, 47), (2, 17, 9), (1, 3, ...</td>\n",
|
|
891
|
+
" <td>91</td>\n",
|
|
892
|
+
" <td>102</td>\n",
|
|
893
|
+
" </tr>\n",
|
|
894
|
+
" <tr>\n",
|
|
895
|
+
" <th>8</th>\n",
|
|
896
|
+
" <td>[(0, 43, 21), (1, 5, 49), (2, 13, 36), (1, 38,...</td>\n",
|
|
897
|
+
" <td>[(2, 34, 13), (1, 44, 24), (0, 44, 49), (1, 19...</td>\n",
|
|
898
|
+
" <td>[(0, 43, 21), (1, 5, 49), (2, 13, 36), (1, 38,...</td>\n",
|
|
899
|
+
" <td>[(2, 34, 13), (1, 44, 24), (0, 44, 49)]</td>\n",
|
|
900
|
+
" <td>[(0, 42, 29), (2, 30, 26), (1, 49, 19), (2, 19...</td>\n",
|
|
901
|
+
" <td>[(1, 19, 32), (0, 46, 40), (1, 7, 17), (2, 11,...</td>\n",
|
|
902
|
+
" <td>108</td>\n",
|
|
903
|
+
" <td>91</td>\n",
|
|
904
|
+
" </tr>\n",
|
|
905
|
+
" <tr>\n",
|
|
906
|
+
" <th>9</th>\n",
|
|
907
|
+
" <td>[(2, 6, 15), (0, 0, 37), (0, 14, 24), (0, 21, ...</td>\n",
|
|
908
|
+
" <td>[(2, 21, 4), (1, 2, 18), (1, 10, 0), (0, 34, 0...</td>\n",
|
|
909
|
+
" <td>[(2, 6, 15), (0, 0, 37), (0, 14, 24), (0, 21, ...</td>\n",
|
|
910
|
+
" <td>[(2, 21, 4), (1, 2, 18), (1, 10, 0), (0, 34, 0...</td>\n",
|
|
911
|
+
" <td>[(0, 48, 24), (1, 37, 44), (1, 35, 10), (1, 49...</td>\n",
|
|
912
|
+
" <td>[(1, 28, 35), (2, 27, 28), (1, 16, 32), (2, 22...</td>\n",
|
|
913
|
+
" <td>100</td>\n",
|
|
914
|
+
" <td>109</td>\n",
|
|
915
|
+
" </tr>\n",
|
|
916
|
+
" </tbody>\n",
|
|
917
|
+
"</table>\n",
|
|
918
|
+
"</div>"
|
|
919
|
+
],
|
|
920
|
+
"text/plain": [
|
|
921
|
+
" all_spots \\\n",
|
|
922
|
+
"name Cy3 \n",
|
|
923
|
+
"acquisition_id 1 \n",
|
|
924
|
+
"cell_id \n",
|
|
925
|
+
"0 [(0, 1, 43), (2, 48, 4), (1, 1, 35), (0, 29, 4... \n",
|
|
926
|
+
"1 [(2, 1, 7), (2, 14, 27), (0, 16, 48), (0, 41, ... \n",
|
|
927
|
+
"2 [(1, 32, 27), (1, 9, 23), (2, 15, 23), (2, 48,... \n",
|
|
928
|
+
"3 [(0, 41, 12), (0, 19, 20), (1, 38, 18), (1, 5,... \n",
|
|
929
|
+
"4 [(1, 49, 37), (2, 39, 43), (0, 10, 42), (2, 43... \n",
|
|
930
|
+
"5 [(0, 21, 23), (0, 15, 35), (2, 17, 43), (0, 11... \n",
|
|
931
|
+
"6 [(1, 25, 37), (2, 16, 22), (0, 22, 48), (2, 10... \n",
|
|
932
|
+
"7 [(2, 47, 12), (2, 41, 26), (1, 3, 22), (0, 7, ... \n",
|
|
933
|
+
"8 [(0, 43, 21), (1, 5, 49), (2, 13, 36), (1, 38,... \n",
|
|
934
|
+
"9 [(2, 6, 15), (0, 0, 37), (0, 14, 24), (0, 21, ... \n",
|
|
935
|
+
"\n",
|
|
936
|
+
" \\\n",
|
|
937
|
+
"name Cy5 \n",
|
|
938
|
+
"acquisition_id 2 \n",
|
|
939
|
+
"cell_id \n",
|
|
940
|
+
"0 [(2, 39, 9), (0, 40, 29), (1, 12, 33), (1, 31,... \n",
|
|
941
|
+
"1 [(1, 28, 15), (2, 14, 39), (1, 15, 45), (1, 44... \n",
|
|
942
|
+
"2 [(2, 25, 41), (0, 47, 29), (1, 15, 11), (0, 19... \n",
|
|
943
|
+
"3 [(2, 12, 49), (2, 11, 3), (1, 49, 34), (2, 18,... \n",
|
|
944
|
+
"4 [(1, 31, 16), (0, 2, 46), (0, 10, 33), (2, 36,... \n",
|
|
945
|
+
"5 [(2, 30, 35), (0, 24, 18), (1, 14, 15), (2, 40... \n",
|
|
946
|
+
"6 [(1, 30, 27), (0, 23, 5), (0, 14, 29), (2, 30,... \n",
|
|
947
|
+
"7 [(2, 13, 25), (1, 29, 49), (2, 22, 44), (1, 39... \n",
|
|
948
|
+
"8 [(2, 34, 13), (1, 44, 24), (0, 44, 49), (1, 19... \n",
|
|
949
|
+
"9 [(2, 21, 4), (1, 2, 18), (1, 10, 0), (0, 34, 0... \n",
|
|
950
|
+
"\n",
|
|
951
|
+
" clustered_spots \\\n",
|
|
952
|
+
"name Cy3 \n",
|
|
953
|
+
"acquisition_id 1 \n",
|
|
954
|
+
"cell_id \n",
|
|
955
|
+
"0 [(0, 1, 43), (2, 48, 4), (1, 1, 35), (0, 29, 4... \n",
|
|
956
|
+
"1 [(2, 1, 7), (2, 14, 27), (0, 16, 48), (0, 41, ... \n",
|
|
957
|
+
"2 [(1, 32, 27), (1, 9, 23), (2, 15, 23), (2, 48,... \n",
|
|
958
|
+
"3 [(0, 41, 12), (0, 19, 20), (1, 38, 18), (1, 5,... \n",
|
|
959
|
+
"4 [(1, 49, 37), (2, 39, 43), (0, 10, 42), (2, 43... \n",
|
|
960
|
+
"5 [(0, 21, 23), (0, 15, 35)] \n",
|
|
961
|
+
"6 [(1, 25, 37), (2, 16, 22), (0, 22, 48), (2, 10... \n",
|
|
962
|
+
"7 [(2, 47, 12), (2, 41, 26), (1, 3, 22), (0, 7, ... \n",
|
|
963
|
+
"8 [(0, 43, 21), (1, 5, 49), (2, 13, 36), (1, 38,... \n",
|
|
964
|
+
"9 [(2, 6, 15), (0, 0, 37), (0, 14, 24), (0, 21, ... \n",
|
|
965
|
+
"\n",
|
|
966
|
+
" \\\n",
|
|
967
|
+
"name Cy5 \n",
|
|
968
|
+
"acquisition_id 2 \n",
|
|
969
|
+
"cell_id \n",
|
|
970
|
+
"0 [(2, 39, 9), (0, 40, 29), (1, 12, 33), (1, 31,... \n",
|
|
971
|
+
"1 [(1, 28, 15), (2, 14, 39), (1, 15, 45), (1, 44... \n",
|
|
972
|
+
"2 [(2, 25, 41), (0, 47, 29), (1, 15, 11), (0, 19... \n",
|
|
973
|
+
"3 [(2, 12, 49), (2, 11, 3), (1, 49, 34), (2, 18,... \n",
|
|
974
|
+
"4 [(1, 31, 16), (0, 2, 46), (0, 10, 33), (2, 36,... \n",
|
|
975
|
+
"5 [(2, 30, 35), (0, 24, 18), (1, 14, 15), (2, 40... \n",
|
|
976
|
+
"6 [(1, 30, 27), (0, 23, 5), (0, 14, 29), (2, 30,... \n",
|
|
977
|
+
"7 [(2, 13, 25), (1, 29, 49), (2, 22, 44), (1, 39... \n",
|
|
978
|
+
"8 [(2, 34, 13), (1, 44, 24), (0, 44, 49)] \n",
|
|
979
|
+
"9 [(2, 21, 4), (1, 2, 18), (1, 10, 0), (0, 34, 0... \n",
|
|
980
|
+
"\n",
|
|
981
|
+
" free_spots \\\n",
|
|
982
|
+
"name Cy3 \n",
|
|
983
|
+
"acquisition_id 1 \n",
|
|
984
|
+
"cell_id \n",
|
|
985
|
+
"0 [(2, 9, 46), (1, 15, 7), (0, 30, 11), (0, 14, ... \n",
|
|
986
|
+
"1 [(2, 10, 1), (1, 32, 19), (1, 1, 0), (0, 24, 2... \n",
|
|
987
|
+
"2 [(0, 48, 36), (1, 48, 48), (2, 33, 37), (1, 19... \n",
|
|
988
|
+
"3 [(1, 42, 40), (0, 39, 15), (0, 37, 9), (0, 47,... \n",
|
|
989
|
+
"4 [(1, 45, 19), (1, 1, 46), (0, 40, 37), (0, 10,... \n",
|
|
990
|
+
"5 [(2, 17, 43), (0, 11, 42), (1, 18, 47), (0, 7,... \n",
|
|
991
|
+
"6 [(1, 34, 47), (0, 22, 23), (2, 39, 12), (1, 42... \n",
|
|
992
|
+
"7 [(1, 36, 14), (1, 47, 11), (0, 31, 40), (1, 28... \n",
|
|
993
|
+
"8 [(0, 42, 29), (2, 30, 26), (1, 49, 19), (2, 19... \n",
|
|
994
|
+
"9 [(0, 48, 24), (1, 37, 44), (1, 35, 10), (1, 49... \n",
|
|
995
|
+
"\n",
|
|
996
|
+
" \\\n",
|
|
997
|
+
"name Cy5 \n",
|
|
998
|
+
"acquisition_id 2 \n",
|
|
999
|
+
"cell_id \n",
|
|
1000
|
+
"0 [(0, 38, 40), (0, 1, 31), (1, 44, 0), (1, 27, ... \n",
|
|
1001
|
+
"1 [(0, 20, 39), (0, 43, 45), (2, 17, 32), (2, 35... \n",
|
|
1002
|
+
"2 [(2, 10, 7), (0, 27, 49), (0, 13, 11), (2, 1, ... \n",
|
|
1003
|
+
"3 [(2, 3, 20), (0, 0, 18), (0, 22, 16), (0, 23, ... \n",
|
|
1004
|
+
"4 [(1, 45, 8), (0, 16, 43), (0, 14, 17), (1, 39,... \n",
|
|
1005
|
+
"5 [(1, 40, 7), (0, 19, 47), (0, 21, 21), (1, 21,... \n",
|
|
1006
|
+
"6 [(1, 14, 10), (0, 48, 23), (1, 20, 10), (2, 16... \n",
|
|
1007
|
+
"7 [(2, 15, 14), (1, 34, 47), (2, 17, 9), (1, 3, ... \n",
|
|
1008
|
+
"8 [(1, 19, 32), (0, 46, 40), (1, 7, 17), (2, 11,... \n",
|
|
1009
|
+
"9 [(1, 28, 35), (2, 27, 28), (1, 16, 32), (2, 22... \n",
|
|
1010
|
+
"\n",
|
|
1011
|
+
" total_rna_number \n",
|
|
1012
|
+
"name Cy3 Cy5 \n",
|
|
1013
|
+
"acquisition_id 1 2 \n",
|
|
1014
|
+
"cell_id \n",
|
|
1015
|
+
"0 101 99 \n",
|
|
1016
|
+
"1 110 89 \n",
|
|
1017
|
+
"2 93 111 \n",
|
|
1018
|
+
"3 106 92 \n",
|
|
1019
|
+
"4 98 97 \n",
|
|
1020
|
+
"5 87 95 \n",
|
|
1021
|
+
"6 106 115 \n",
|
|
1022
|
+
"7 91 102 \n",
|
|
1023
|
+
"8 108 91 \n",
|
|
1024
|
+
"9 100 109 "
|
|
1025
|
+
]
|
|
1026
|
+
},
|
|
1027
|
+
"execution_count": 201,
|
|
1028
|
+
"metadata": {},
|
|
1029
|
+
"output_type": "execute_result"
|
|
1030
|
+
}
|
|
1031
|
+
],
|
|
1032
|
+
"source": [
|
|
1033
|
+
"pivot_values_columns = ['all_spots', 'clustered_spots', 'free_spots', 'total_rna_number']\n",
|
|
1034
|
+
"colocalisation_df = Cell_df.pivot(\n",
|
|
1035
|
+
" columns=['name', 'acquisition_id'],\n",
|
|
1036
|
+
" values= pivot_values_columns,\n",
|
|
1037
|
+
" index= 'cell_id'\n",
|
|
1038
|
+
" )\n",
|
|
1039
|
+
"colocalisation_df"
|
|
1040
|
+
]
|
|
1041
|
+
},
|
|
1042
|
+
{
|
|
1043
|
+
"cell_type": "markdown",
|
|
1044
|
+
"metadata": {},
|
|
1045
|
+
"source": [
|
|
1046
|
+
"This DataFrame shape allows to get use the current implementation : \n",
|
|
1047
|
+
"\n"
|
|
1048
|
+
]
|
|
1049
|
+
},
|
|
1050
|
+
{
|
|
1051
|
+
"cell_type": "code",
|
|
1052
|
+
"execution_count": null,
|
|
1053
|
+
"metadata": {},
|
|
1054
|
+
"outputs": [],
|
|
1055
|
+
"source": [
|
|
1056
|
+
"if False : \n",
|
|
1057
|
+
" colocalisation_df[(\"spots_to_spots_count\",coloc_name,\"forward\")] = colocalisation_df['rna_coords'].apply(\n",
|
|
1058
|
+
" lambda x: spots_colocalisation(\n",
|
|
1059
|
+
" spot_list1= x[(acquisition_name_id1,acquisition_id1)],\n",
|
|
1060
|
+
" spot_list2= x[(acquisition_name_id2,acquisition_id2)],\n",
|
|
1061
|
+
" distance=colocalisation_distance,\n",
|
|
1062
|
+
" voxel_size=voxel_size\n",
|
|
1063
|
+
" ),axis=1\n",
|
|
1064
|
+
" )\n",
|
|
1065
|
+
" colocalisation_df[(\"spots_to_spots_fraction\",coloc_name,\"forward\")] = colocalisation_df[(\"spots_to_spots_count\",coloc_name,\"forward\")].astype(float) / colocalisation_df[('total_rna_number',acquisition_name_id1,acquisition_id1)].astype(float)"
|
|
1066
|
+
]
|
|
1067
|
+
},
|
|
1068
|
+
{
|
|
1069
|
+
"cell_type": "markdown",
|
|
1070
|
+
"metadata": {},
|
|
1071
|
+
"source": [
|
|
1072
|
+
"# Concatenate DataFrames with different columns on axis 0"
|
|
1073
|
+
]
|
|
1074
|
+
},
|
|
1075
|
+
{
|
|
1076
|
+
"cell_type": "code",
|
|
1077
|
+
"execution_count": 202,
|
|
1078
|
+
"metadata": {},
|
|
1079
|
+
"outputs": [],
|
|
1080
|
+
"source": [
|
|
1081
|
+
"import pandas as pd\n",
|
|
1082
|
+
"import numpy as np"
|
|
1083
|
+
]
|
|
1084
|
+
},
|
|
1085
|
+
{
|
|
1086
|
+
"cell_type": "code",
|
|
1087
|
+
"execution_count": 219,
|
|
1088
|
+
"metadata": {},
|
|
1089
|
+
"outputs": [],
|
|
1090
|
+
"source": [
|
|
1091
|
+
"COLUMNS_1 = ['group_id', 'id', 'fruits','colors']\n",
|
|
1092
|
+
"COLUMNS_2 = ['group_id', 'id', 'vegetables','colors']\n",
|
|
1093
|
+
"COLUMNS_MAIN = ['summer','winter']\n",
|
|
1094
|
+
"\n",
|
|
1095
|
+
"COLORS = ['green','red','yellow','orange','green']\n",
|
|
1096
|
+
"group_id = [1,2,1,2,1]\n",
|
|
1097
|
+
"fruits = ['apple', 'apple','lemon','kaki','pear']\n",
|
|
1098
|
+
"vegetables = ['pepper', 'tomato','peper','pepper','courgette']\n",
|
|
1099
|
+
"ids = np.arange(len(group_id))"
|
|
1100
|
+
]
|
|
1101
|
+
},
|
|
1102
|
+
{
|
|
1103
|
+
"cell_type": "code",
|
|
1104
|
+
"execution_count": 225,
|
|
1105
|
+
"metadata": {},
|
|
1106
|
+
"outputs": [],
|
|
1107
|
+
"source": [
|
|
1108
|
+
"DF1 = pd.DataFrame(columns=pd.MultiIndex.from_product([COLUMNS_MAIN,COLUMNS_1]), data= zip(group_id,ids,fruits,COLORS, group_id,ids,fruits,COLORS))\n",
|
|
1109
|
+
"DF2 = pd.DataFrame(columns=pd.MultiIndex.from_product([COLUMNS_MAIN,COLUMNS_2]), data= zip(group_id,ids,vegetables,COLORS, group_id,ids,vegetables,COLORS))"
|
|
1110
|
+
]
|
|
1111
|
+
},
|
|
1112
|
+
{
|
|
1113
|
+
"cell_type": "code",
|
|
1114
|
+
"execution_count": 226,
|
|
1115
|
+
"metadata": {},
|
|
1116
|
+
"outputs": [
|
|
1117
|
+
{
|
|
1118
|
+
"data": {
|
|
1119
|
+
"text/html": [
|
|
1120
|
+
"<div>\n",
|
|
1121
|
+
"<style scoped>\n",
|
|
1122
|
+
" .dataframe tbody tr th:only-of-type {\n",
|
|
1123
|
+
" vertical-align: middle;\n",
|
|
1124
|
+
" }\n",
|
|
1125
|
+
"\n",
|
|
1126
|
+
" .dataframe tbody tr th {\n",
|
|
1127
|
+
" vertical-align: top;\n",
|
|
1128
|
+
" }\n",
|
|
1129
|
+
"\n",
|
|
1130
|
+
" .dataframe thead tr th {\n",
|
|
1131
|
+
" text-align: left;\n",
|
|
1132
|
+
" }\n",
|
|
1133
|
+
"</style>\n",
|
|
1134
|
+
"<table border=\"1\" class=\"dataframe\">\n",
|
|
1135
|
+
" <thead>\n",
|
|
1136
|
+
" <tr>\n",
|
|
1137
|
+
" <th></th>\n",
|
|
1138
|
+
" <th colspan=\"4\" halign=\"left\">summer</th>\n",
|
|
1139
|
+
" <th colspan=\"4\" halign=\"left\">winter</th>\n",
|
|
1140
|
+
" </tr>\n",
|
|
1141
|
+
" <tr>\n",
|
|
1142
|
+
" <th></th>\n",
|
|
1143
|
+
" <th>group_id</th>\n",
|
|
1144
|
+
" <th>id</th>\n",
|
|
1145
|
+
" <th>fruits</th>\n",
|
|
1146
|
+
" <th>colors</th>\n",
|
|
1147
|
+
" <th>group_id</th>\n",
|
|
1148
|
+
" <th>id</th>\n",
|
|
1149
|
+
" <th>fruits</th>\n",
|
|
1150
|
+
" <th>colors</th>\n",
|
|
1151
|
+
" </tr>\n",
|
|
1152
|
+
" </thead>\n",
|
|
1153
|
+
" <tbody>\n",
|
|
1154
|
+
" <tr>\n",
|
|
1155
|
+
" <th>0</th>\n",
|
|
1156
|
+
" <td>1</td>\n",
|
|
1157
|
+
" <td>0</td>\n",
|
|
1158
|
+
" <td>apple</td>\n",
|
|
1159
|
+
" <td>green</td>\n",
|
|
1160
|
+
" <td>1</td>\n",
|
|
1161
|
+
" <td>0</td>\n",
|
|
1162
|
+
" <td>apple</td>\n",
|
|
1163
|
+
" <td>green</td>\n",
|
|
1164
|
+
" </tr>\n",
|
|
1165
|
+
" <tr>\n",
|
|
1166
|
+
" <th>1</th>\n",
|
|
1167
|
+
" <td>2</td>\n",
|
|
1168
|
+
" <td>1</td>\n",
|
|
1169
|
+
" <td>apple</td>\n",
|
|
1170
|
+
" <td>red</td>\n",
|
|
1171
|
+
" <td>2</td>\n",
|
|
1172
|
+
" <td>1</td>\n",
|
|
1173
|
+
" <td>apple</td>\n",
|
|
1174
|
+
" <td>red</td>\n",
|
|
1175
|
+
" </tr>\n",
|
|
1176
|
+
" <tr>\n",
|
|
1177
|
+
" <th>2</th>\n",
|
|
1178
|
+
" <td>1</td>\n",
|
|
1179
|
+
" <td>2</td>\n",
|
|
1180
|
+
" <td>lemon</td>\n",
|
|
1181
|
+
" <td>yellow</td>\n",
|
|
1182
|
+
" <td>1</td>\n",
|
|
1183
|
+
" <td>2</td>\n",
|
|
1184
|
+
" <td>lemon</td>\n",
|
|
1185
|
+
" <td>yellow</td>\n",
|
|
1186
|
+
" </tr>\n",
|
|
1187
|
+
" <tr>\n",
|
|
1188
|
+
" <th>3</th>\n",
|
|
1189
|
+
" <td>2</td>\n",
|
|
1190
|
+
" <td>3</td>\n",
|
|
1191
|
+
" <td>kaki</td>\n",
|
|
1192
|
+
" <td>orange</td>\n",
|
|
1193
|
+
" <td>2</td>\n",
|
|
1194
|
+
" <td>3</td>\n",
|
|
1195
|
+
" <td>kaki</td>\n",
|
|
1196
|
+
" <td>orange</td>\n",
|
|
1197
|
+
" </tr>\n",
|
|
1198
|
+
" <tr>\n",
|
|
1199
|
+
" <th>4</th>\n",
|
|
1200
|
+
" <td>1</td>\n",
|
|
1201
|
+
" <td>4</td>\n",
|
|
1202
|
+
" <td>pear</td>\n",
|
|
1203
|
+
" <td>green</td>\n",
|
|
1204
|
+
" <td>1</td>\n",
|
|
1205
|
+
" <td>4</td>\n",
|
|
1206
|
+
" <td>pear</td>\n",
|
|
1207
|
+
" <td>green</td>\n",
|
|
1208
|
+
" </tr>\n",
|
|
1209
|
+
" <tr>\n",
|
|
1210
|
+
" <th>5</th>\n",
|
|
1211
|
+
" <td>1</td>\n",
|
|
1212
|
+
" <td>5</td>\n",
|
|
1213
|
+
" <td>apple</td>\n",
|
|
1214
|
+
" <td>green</td>\n",
|
|
1215
|
+
" <td>1</td>\n",
|
|
1216
|
+
" <td>5</td>\n",
|
|
1217
|
+
" <td>apple</td>\n",
|
|
1218
|
+
" <td>green</td>\n",
|
|
1219
|
+
" </tr>\n",
|
|
1220
|
+
" <tr>\n",
|
|
1221
|
+
" <th>6</th>\n",
|
|
1222
|
+
" <td>2</td>\n",
|
|
1223
|
+
" <td>6</td>\n",
|
|
1224
|
+
" <td>apple</td>\n",
|
|
1225
|
+
" <td>red</td>\n",
|
|
1226
|
+
" <td>2</td>\n",
|
|
1227
|
+
" <td>6</td>\n",
|
|
1228
|
+
" <td>apple</td>\n",
|
|
1229
|
+
" <td>red</td>\n",
|
|
1230
|
+
" </tr>\n",
|
|
1231
|
+
" <tr>\n",
|
|
1232
|
+
" <th>7</th>\n",
|
|
1233
|
+
" <td>1</td>\n",
|
|
1234
|
+
" <td>7</td>\n",
|
|
1235
|
+
" <td>lemon</td>\n",
|
|
1236
|
+
" <td>yellow</td>\n",
|
|
1237
|
+
" <td>1</td>\n",
|
|
1238
|
+
" <td>7</td>\n",
|
|
1239
|
+
" <td>lemon</td>\n",
|
|
1240
|
+
" <td>yellow</td>\n",
|
|
1241
|
+
" </tr>\n",
|
|
1242
|
+
" <tr>\n",
|
|
1243
|
+
" <th>8</th>\n",
|
|
1244
|
+
" <td>2</td>\n",
|
|
1245
|
+
" <td>8</td>\n",
|
|
1246
|
+
" <td>kaki</td>\n",
|
|
1247
|
+
" <td>orange</td>\n",
|
|
1248
|
+
" <td>2</td>\n",
|
|
1249
|
+
" <td>8</td>\n",
|
|
1250
|
+
" <td>kaki</td>\n",
|
|
1251
|
+
" <td>orange</td>\n",
|
|
1252
|
+
" </tr>\n",
|
|
1253
|
+
" <tr>\n",
|
|
1254
|
+
" <th>9</th>\n",
|
|
1255
|
+
" <td>1</td>\n",
|
|
1256
|
+
" <td>9</td>\n",
|
|
1257
|
+
" <td>pear</td>\n",
|
|
1258
|
+
" <td>green</td>\n",
|
|
1259
|
+
" <td>1</td>\n",
|
|
1260
|
+
" <td>9</td>\n",
|
|
1261
|
+
" <td>pear</td>\n",
|
|
1262
|
+
" <td>green</td>\n",
|
|
1263
|
+
" </tr>\n",
|
|
1264
|
+
" </tbody>\n",
|
|
1265
|
+
"</table>\n",
|
|
1266
|
+
"</div>"
|
|
1267
|
+
],
|
|
1268
|
+
"text/plain": [
|
|
1269
|
+
" summer winter \n",
|
|
1270
|
+
" group_id id fruits colors group_id id fruits colors\n",
|
|
1271
|
+
"0 1 0 apple green 1 0 apple green\n",
|
|
1272
|
+
"1 2 1 apple red 2 1 apple red\n",
|
|
1273
|
+
"2 1 2 lemon yellow 1 2 lemon yellow\n",
|
|
1274
|
+
"3 2 3 kaki orange 2 3 kaki orange\n",
|
|
1275
|
+
"4 1 4 pear green 1 4 pear green\n",
|
|
1276
|
+
"5 1 5 apple green 1 5 apple green\n",
|
|
1277
|
+
"6 2 6 apple red 2 6 apple red\n",
|
|
1278
|
+
"7 1 7 lemon yellow 1 7 lemon yellow\n",
|
|
1279
|
+
"8 2 8 kaki orange 2 8 kaki orange\n",
|
|
1280
|
+
"9 1 9 pear green 1 9 pear green"
|
|
1281
|
+
]
|
|
1282
|
+
},
|
|
1283
|
+
"execution_count": 226,
|
|
1284
|
+
"metadata": {},
|
|
1285
|
+
"output_type": "execute_result"
|
|
1286
|
+
}
|
|
1287
|
+
],
|
|
1288
|
+
"source": [
|
|
1289
|
+
"DF1"
|
|
1290
|
+
]
|
|
1291
|
+
},
|
|
1292
|
+
{
|
|
1293
|
+
"cell_type": "code",
|
|
1294
|
+
"execution_count": 227,
|
|
1295
|
+
"metadata": {},
|
|
1296
|
+
"outputs": [
|
|
1297
|
+
{
|
|
1298
|
+
"data": {
|
|
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|
+
"text/html": [
|
|
1300
|
+
"<div>\n",
|
|
1301
|
+
"<style scoped>\n",
|
|
1302
|
+
" .dataframe tbody tr th:only-of-type {\n",
|
|
1303
|
+
" vertical-align: middle;\n",
|
|
1304
|
+
" }\n",
|
|
1305
|
+
"\n",
|
|
1306
|
+
" .dataframe tbody tr th {\n",
|
|
1307
|
+
" vertical-align: top;\n",
|
|
1308
|
+
" }\n",
|
|
1309
|
+
"\n",
|
|
1310
|
+
" .dataframe thead tr th {\n",
|
|
1311
|
+
" text-align: left;\n",
|
|
1312
|
+
" }\n",
|
|
1313
|
+
"</style>\n",
|
|
1314
|
+
"<table border=\"1\" class=\"dataframe\">\n",
|
|
1315
|
+
" <thead>\n",
|
|
1316
|
+
" <tr>\n",
|
|
1317
|
+
" <th></th>\n",
|
|
1318
|
+
" <th colspan=\"4\" halign=\"left\">summer</th>\n",
|
|
1319
|
+
" <th colspan=\"4\" halign=\"left\">winter</th>\n",
|
|
1320
|
+
" </tr>\n",
|
|
1321
|
+
" <tr>\n",
|
|
1322
|
+
" <th></th>\n",
|
|
1323
|
+
" <th>group_id</th>\n",
|
|
1324
|
+
" <th>id</th>\n",
|
|
1325
|
+
" <th>vegetables</th>\n",
|
|
1326
|
+
" <th>colors</th>\n",
|
|
1327
|
+
" <th>group_id</th>\n",
|
|
1328
|
+
" <th>id</th>\n",
|
|
1329
|
+
" <th>vegetables</th>\n",
|
|
1330
|
+
" <th>colors</th>\n",
|
|
1331
|
+
" </tr>\n",
|
|
1332
|
+
" </thead>\n",
|
|
1333
|
+
" <tbody>\n",
|
|
1334
|
+
" <tr>\n",
|
|
1335
|
+
" <th>0</th>\n",
|
|
1336
|
+
" <td>1</td>\n",
|
|
1337
|
+
" <td>0</td>\n",
|
|
1338
|
+
" <td>pepper</td>\n",
|
|
1339
|
+
" <td>green</td>\n",
|
|
1340
|
+
" <td>1</td>\n",
|
|
1341
|
+
" <td>0</td>\n",
|
|
1342
|
+
" <td>pepper</td>\n",
|
|
1343
|
+
" <td>green</td>\n",
|
|
1344
|
+
" </tr>\n",
|
|
1345
|
+
" <tr>\n",
|
|
1346
|
+
" <th>1</th>\n",
|
|
1347
|
+
" <td>2</td>\n",
|
|
1348
|
+
" <td>1</td>\n",
|
|
1349
|
+
" <td>tomato</td>\n",
|
|
1350
|
+
" <td>red</td>\n",
|
|
1351
|
+
" <td>2</td>\n",
|
|
1352
|
+
" <td>1</td>\n",
|
|
1353
|
+
" <td>tomato</td>\n",
|
|
1354
|
+
" <td>red</td>\n",
|
|
1355
|
+
" </tr>\n",
|
|
1356
|
+
" <tr>\n",
|
|
1357
|
+
" <th>2</th>\n",
|
|
1358
|
+
" <td>1</td>\n",
|
|
1359
|
+
" <td>2</td>\n",
|
|
1360
|
+
" <td>peper</td>\n",
|
|
1361
|
+
" <td>yellow</td>\n",
|
|
1362
|
+
" <td>1</td>\n",
|
|
1363
|
+
" <td>2</td>\n",
|
|
1364
|
+
" <td>peper</td>\n",
|
|
1365
|
+
" <td>yellow</td>\n",
|
|
1366
|
+
" </tr>\n",
|
|
1367
|
+
" <tr>\n",
|
|
1368
|
+
" <th>3</th>\n",
|
|
1369
|
+
" <td>2</td>\n",
|
|
1370
|
+
" <td>3</td>\n",
|
|
1371
|
+
" <td>pepper</td>\n",
|
|
1372
|
+
" <td>orange</td>\n",
|
|
1373
|
+
" <td>2</td>\n",
|
|
1374
|
+
" <td>3</td>\n",
|
|
1375
|
+
" <td>pepper</td>\n",
|
|
1376
|
+
" <td>orange</td>\n",
|
|
1377
|
+
" </tr>\n",
|
|
1378
|
+
" <tr>\n",
|
|
1379
|
+
" <th>4</th>\n",
|
|
1380
|
+
" <td>1</td>\n",
|
|
1381
|
+
" <td>4</td>\n",
|
|
1382
|
+
" <td>courgette</td>\n",
|
|
1383
|
+
" <td>green</td>\n",
|
|
1384
|
+
" <td>1</td>\n",
|
|
1385
|
+
" <td>4</td>\n",
|
|
1386
|
+
" <td>courgette</td>\n",
|
|
1387
|
+
" <td>green</td>\n",
|
|
1388
|
+
" </tr>\n",
|
|
1389
|
+
" <tr>\n",
|
|
1390
|
+
" <th>5</th>\n",
|
|
1391
|
+
" <td>1</td>\n",
|
|
1392
|
+
" <td>5</td>\n",
|
|
1393
|
+
" <td>pepper</td>\n",
|
|
1394
|
+
" <td>green</td>\n",
|
|
1395
|
+
" <td>1</td>\n",
|
|
1396
|
+
" <td>5</td>\n",
|
|
1397
|
+
" <td>pepper</td>\n",
|
|
1398
|
+
" <td>green</td>\n",
|
|
1399
|
+
" </tr>\n",
|
|
1400
|
+
" <tr>\n",
|
|
1401
|
+
" <th>6</th>\n",
|
|
1402
|
+
" <td>2</td>\n",
|
|
1403
|
+
" <td>6</td>\n",
|
|
1404
|
+
" <td>tomato</td>\n",
|
|
1405
|
+
" <td>red</td>\n",
|
|
1406
|
+
" <td>2</td>\n",
|
|
1407
|
+
" <td>6</td>\n",
|
|
1408
|
+
" <td>tomato</td>\n",
|
|
1409
|
+
" <td>red</td>\n",
|
|
1410
|
+
" </tr>\n",
|
|
1411
|
+
" <tr>\n",
|
|
1412
|
+
" <th>7</th>\n",
|
|
1413
|
+
" <td>1</td>\n",
|
|
1414
|
+
" <td>7</td>\n",
|
|
1415
|
+
" <td>peper</td>\n",
|
|
1416
|
+
" <td>yellow</td>\n",
|
|
1417
|
+
" <td>1</td>\n",
|
|
1418
|
+
" <td>7</td>\n",
|
|
1419
|
+
" <td>peper</td>\n",
|
|
1420
|
+
" <td>yellow</td>\n",
|
|
1421
|
+
" </tr>\n",
|
|
1422
|
+
" <tr>\n",
|
|
1423
|
+
" <th>8</th>\n",
|
|
1424
|
+
" <td>2</td>\n",
|
|
1425
|
+
" <td>8</td>\n",
|
|
1426
|
+
" <td>pepper</td>\n",
|
|
1427
|
+
" <td>orange</td>\n",
|
|
1428
|
+
" <td>2</td>\n",
|
|
1429
|
+
" <td>8</td>\n",
|
|
1430
|
+
" <td>pepper</td>\n",
|
|
1431
|
+
" <td>orange</td>\n",
|
|
1432
|
+
" </tr>\n",
|
|
1433
|
+
" <tr>\n",
|
|
1434
|
+
" <th>9</th>\n",
|
|
1435
|
+
" <td>1</td>\n",
|
|
1436
|
+
" <td>9</td>\n",
|
|
1437
|
+
" <td>courgette</td>\n",
|
|
1438
|
+
" <td>green</td>\n",
|
|
1439
|
+
" <td>1</td>\n",
|
|
1440
|
+
" <td>9</td>\n",
|
|
1441
|
+
" <td>courgette</td>\n",
|
|
1442
|
+
" <td>green</td>\n",
|
|
1443
|
+
" </tr>\n",
|
|
1444
|
+
" </tbody>\n",
|
|
1445
|
+
"</table>\n",
|
|
1446
|
+
"</div>"
|
|
1447
|
+
],
|
|
1448
|
+
"text/plain": [
|
|
1449
|
+
" summer winter \n",
|
|
1450
|
+
" group_id id vegetables colors group_id id vegetables colors\n",
|
|
1451
|
+
"0 1 0 pepper green 1 0 pepper green\n",
|
|
1452
|
+
"1 2 1 tomato red 2 1 tomato red\n",
|
|
1453
|
+
"2 1 2 peper yellow 1 2 peper yellow\n",
|
|
1454
|
+
"3 2 3 pepper orange 2 3 pepper orange\n",
|
|
1455
|
+
"4 1 4 courgette green 1 4 courgette green\n",
|
|
1456
|
+
"5 1 5 pepper green 1 5 pepper green\n",
|
|
1457
|
+
"6 2 6 tomato red 2 6 tomato red\n",
|
|
1458
|
+
"7 1 7 peper yellow 1 7 peper yellow\n",
|
|
1459
|
+
"8 2 8 pepper orange 2 8 pepper orange\n",
|
|
1460
|
+
"9 1 9 courgette green 1 9 courgette green"
|
|
1461
|
+
]
|
|
1462
|
+
},
|
|
1463
|
+
"execution_count": 227,
|
|
1464
|
+
"metadata": {},
|
|
1465
|
+
"output_type": "execute_result"
|
|
1466
|
+
}
|
|
1467
|
+
],
|
|
1468
|
+
"source": [
|
|
1469
|
+
"DF2"
|
|
1470
|
+
]
|
|
1471
|
+
},
|
|
1472
|
+
{
|
|
1473
|
+
"cell_type": "code",
|
|
1474
|
+
"execution_count": 228,
|
|
1475
|
+
"metadata": {},
|
|
1476
|
+
"outputs": [
|
|
1477
|
+
{
|
|
1478
|
+
"data": {
|
|
1479
|
+
"text/html": [
|
|
1480
|
+
"<div>\n",
|
|
1481
|
+
"<style scoped>\n",
|
|
1482
|
+
" .dataframe tbody tr th:only-of-type {\n",
|
|
1483
|
+
" vertical-align: middle;\n",
|
|
1484
|
+
" }\n",
|
|
1485
|
+
"\n",
|
|
1486
|
+
" .dataframe tbody tr th {\n",
|
|
1487
|
+
" vertical-align: top;\n",
|
|
1488
|
+
" }\n",
|
|
1489
|
+
"\n",
|
|
1490
|
+
" .dataframe thead tr th {\n",
|
|
1491
|
+
" text-align: left;\n",
|
|
1492
|
+
" }\n",
|
|
1493
|
+
"</style>\n",
|
|
1494
|
+
"<table border=\"1\" class=\"dataframe\">\n",
|
|
1495
|
+
" <thead>\n",
|
|
1496
|
+
" <tr>\n",
|
|
1497
|
+
" <th></th>\n",
|
|
1498
|
+
" <th colspan=\"4\" halign=\"left\">summer</th>\n",
|
|
1499
|
+
" <th colspan=\"4\" halign=\"left\">winter</th>\n",
|
|
1500
|
+
" <th>summer</th>\n",
|
|
1501
|
+
" <th>winter</th>\n",
|
|
1502
|
+
" </tr>\n",
|
|
1503
|
+
" <tr>\n",
|
|
1504
|
+
" <th></th>\n",
|
|
1505
|
+
" <th>group_id</th>\n",
|
|
1506
|
+
" <th>id</th>\n",
|
|
1507
|
+
" <th>fruits</th>\n",
|
|
1508
|
+
" <th>colors</th>\n",
|
|
1509
|
+
" <th>group_id</th>\n",
|
|
1510
|
+
" <th>id</th>\n",
|
|
1511
|
+
" <th>fruits</th>\n",
|
|
1512
|
+
" <th>colors</th>\n",
|
|
1513
|
+
" <th>vegetables</th>\n",
|
|
1514
|
+
" <th>vegetables</th>\n",
|
|
1515
|
+
" </tr>\n",
|
|
1516
|
+
" </thead>\n",
|
|
1517
|
+
" <tbody>\n",
|
|
1518
|
+
" <tr>\n",
|
|
1519
|
+
" <th>0</th>\n",
|
|
1520
|
+
" <td>1</td>\n",
|
|
1521
|
+
" <td>0</td>\n",
|
|
1522
|
+
" <td>apple</td>\n",
|
|
1523
|
+
" <td>green</td>\n",
|
|
1524
|
+
" <td>1</td>\n",
|
|
1525
|
+
" <td>0</td>\n",
|
|
1526
|
+
" <td>apple</td>\n",
|
|
1527
|
+
" <td>green</td>\n",
|
|
1528
|
+
" <td>NaN</td>\n",
|
|
1529
|
+
" <td>NaN</td>\n",
|
|
1530
|
+
" </tr>\n",
|
|
1531
|
+
" <tr>\n",
|
|
1532
|
+
" <th>1</th>\n",
|
|
1533
|
+
" <td>2</td>\n",
|
|
1534
|
+
" <td>1</td>\n",
|
|
1535
|
+
" <td>apple</td>\n",
|
|
1536
|
+
" <td>red</td>\n",
|
|
1537
|
+
" <td>2</td>\n",
|
|
1538
|
+
" <td>1</td>\n",
|
|
1539
|
+
" <td>apple</td>\n",
|
|
1540
|
+
" <td>red</td>\n",
|
|
1541
|
+
" <td>NaN</td>\n",
|
|
1542
|
+
" <td>NaN</td>\n",
|
|
1543
|
+
" </tr>\n",
|
|
1544
|
+
" <tr>\n",
|
|
1545
|
+
" <th>2</th>\n",
|
|
1546
|
+
" <td>1</td>\n",
|
|
1547
|
+
" <td>2</td>\n",
|
|
1548
|
+
" <td>lemon</td>\n",
|
|
1549
|
+
" <td>yellow</td>\n",
|
|
1550
|
+
" <td>1</td>\n",
|
|
1551
|
+
" <td>2</td>\n",
|
|
1552
|
+
" <td>lemon</td>\n",
|
|
1553
|
+
" <td>yellow</td>\n",
|
|
1554
|
+
" <td>NaN</td>\n",
|
|
1555
|
+
" <td>NaN</td>\n",
|
|
1556
|
+
" </tr>\n",
|
|
1557
|
+
" <tr>\n",
|
|
1558
|
+
" <th>3</th>\n",
|
|
1559
|
+
" <td>2</td>\n",
|
|
1560
|
+
" <td>3</td>\n",
|
|
1561
|
+
" <td>kaki</td>\n",
|
|
1562
|
+
" <td>orange</td>\n",
|
|
1563
|
+
" <td>2</td>\n",
|
|
1564
|
+
" <td>3</td>\n",
|
|
1565
|
+
" <td>kaki</td>\n",
|
|
1566
|
+
" <td>orange</td>\n",
|
|
1567
|
+
" <td>NaN</td>\n",
|
|
1568
|
+
" <td>NaN</td>\n",
|
|
1569
|
+
" </tr>\n",
|
|
1570
|
+
" <tr>\n",
|
|
1571
|
+
" <th>4</th>\n",
|
|
1572
|
+
" <td>1</td>\n",
|
|
1573
|
+
" <td>4</td>\n",
|
|
1574
|
+
" <td>pear</td>\n",
|
|
1575
|
+
" <td>green</td>\n",
|
|
1576
|
+
" <td>1</td>\n",
|
|
1577
|
+
" <td>4</td>\n",
|
|
1578
|
+
" <td>pear</td>\n",
|
|
1579
|
+
" <td>green</td>\n",
|
|
1580
|
+
" <td>NaN</td>\n",
|
|
1581
|
+
" <td>NaN</td>\n",
|
|
1582
|
+
" </tr>\n",
|
|
1583
|
+
" <tr>\n",
|
|
1584
|
+
" <th>5</th>\n",
|
|
1585
|
+
" <td>1</td>\n",
|
|
1586
|
+
" <td>5</td>\n",
|
|
1587
|
+
" <td>apple</td>\n",
|
|
1588
|
+
" <td>green</td>\n",
|
|
1589
|
+
" <td>1</td>\n",
|
|
1590
|
+
" <td>5</td>\n",
|
|
1591
|
+
" <td>apple</td>\n",
|
|
1592
|
+
" <td>green</td>\n",
|
|
1593
|
+
" <td>NaN</td>\n",
|
|
1594
|
+
" <td>NaN</td>\n",
|
|
1595
|
+
" </tr>\n",
|
|
1596
|
+
" <tr>\n",
|
|
1597
|
+
" <th>6</th>\n",
|
|
1598
|
+
" <td>2</td>\n",
|
|
1599
|
+
" <td>6</td>\n",
|
|
1600
|
+
" <td>apple</td>\n",
|
|
1601
|
+
" <td>red</td>\n",
|
|
1602
|
+
" <td>2</td>\n",
|
|
1603
|
+
" <td>6</td>\n",
|
|
1604
|
+
" <td>apple</td>\n",
|
|
1605
|
+
" <td>red</td>\n",
|
|
1606
|
+
" <td>NaN</td>\n",
|
|
1607
|
+
" <td>NaN</td>\n",
|
|
1608
|
+
" </tr>\n",
|
|
1609
|
+
" <tr>\n",
|
|
1610
|
+
" <th>7</th>\n",
|
|
1611
|
+
" <td>1</td>\n",
|
|
1612
|
+
" <td>7</td>\n",
|
|
1613
|
+
" <td>lemon</td>\n",
|
|
1614
|
+
" <td>yellow</td>\n",
|
|
1615
|
+
" <td>1</td>\n",
|
|
1616
|
+
" <td>7</td>\n",
|
|
1617
|
+
" <td>lemon</td>\n",
|
|
1618
|
+
" <td>yellow</td>\n",
|
|
1619
|
+
" <td>NaN</td>\n",
|
|
1620
|
+
" <td>NaN</td>\n",
|
|
1621
|
+
" </tr>\n",
|
|
1622
|
+
" <tr>\n",
|
|
1623
|
+
" <th>8</th>\n",
|
|
1624
|
+
" <td>2</td>\n",
|
|
1625
|
+
" <td>8</td>\n",
|
|
1626
|
+
" <td>kaki</td>\n",
|
|
1627
|
+
" <td>orange</td>\n",
|
|
1628
|
+
" <td>2</td>\n",
|
|
1629
|
+
" <td>8</td>\n",
|
|
1630
|
+
" <td>kaki</td>\n",
|
|
1631
|
+
" <td>orange</td>\n",
|
|
1632
|
+
" <td>NaN</td>\n",
|
|
1633
|
+
" <td>NaN</td>\n",
|
|
1634
|
+
" </tr>\n",
|
|
1635
|
+
" <tr>\n",
|
|
1636
|
+
" <th>9</th>\n",
|
|
1637
|
+
" <td>1</td>\n",
|
|
1638
|
+
" <td>9</td>\n",
|
|
1639
|
+
" <td>pear</td>\n",
|
|
1640
|
+
" <td>green</td>\n",
|
|
1641
|
+
" <td>1</td>\n",
|
|
1642
|
+
" <td>9</td>\n",
|
|
1643
|
+
" <td>pear</td>\n",
|
|
1644
|
+
" <td>green</td>\n",
|
|
1645
|
+
" <td>NaN</td>\n",
|
|
1646
|
+
" <td>NaN</td>\n",
|
|
1647
|
+
" </tr>\n",
|
|
1648
|
+
" <tr>\n",
|
|
1649
|
+
" <th>10</th>\n",
|
|
1650
|
+
" <td>1</td>\n",
|
|
1651
|
+
" <td>0</td>\n",
|
|
1652
|
+
" <td>NaN</td>\n",
|
|
1653
|
+
" <td>green</td>\n",
|
|
1654
|
+
" <td>1</td>\n",
|
|
1655
|
+
" <td>0</td>\n",
|
|
1656
|
+
" <td>NaN</td>\n",
|
|
1657
|
+
" <td>green</td>\n",
|
|
1658
|
+
" <td>pepper</td>\n",
|
|
1659
|
+
" <td>pepper</td>\n",
|
|
1660
|
+
" </tr>\n",
|
|
1661
|
+
" <tr>\n",
|
|
1662
|
+
" <th>11</th>\n",
|
|
1663
|
+
" <td>2</td>\n",
|
|
1664
|
+
" <td>1</td>\n",
|
|
1665
|
+
" <td>NaN</td>\n",
|
|
1666
|
+
" <td>red</td>\n",
|
|
1667
|
+
" <td>2</td>\n",
|
|
1668
|
+
" <td>1</td>\n",
|
|
1669
|
+
" <td>NaN</td>\n",
|
|
1670
|
+
" <td>red</td>\n",
|
|
1671
|
+
" <td>tomato</td>\n",
|
|
1672
|
+
" <td>tomato</td>\n",
|
|
1673
|
+
" </tr>\n",
|
|
1674
|
+
" <tr>\n",
|
|
1675
|
+
" <th>12</th>\n",
|
|
1676
|
+
" <td>1</td>\n",
|
|
1677
|
+
" <td>2</td>\n",
|
|
1678
|
+
" <td>NaN</td>\n",
|
|
1679
|
+
" <td>yellow</td>\n",
|
|
1680
|
+
" <td>1</td>\n",
|
|
1681
|
+
" <td>2</td>\n",
|
|
1682
|
+
" <td>NaN</td>\n",
|
|
1683
|
+
" <td>yellow</td>\n",
|
|
1684
|
+
" <td>peper</td>\n",
|
|
1685
|
+
" <td>peper</td>\n",
|
|
1686
|
+
" </tr>\n",
|
|
1687
|
+
" <tr>\n",
|
|
1688
|
+
" <th>13</th>\n",
|
|
1689
|
+
" <td>2</td>\n",
|
|
1690
|
+
" <td>3</td>\n",
|
|
1691
|
+
" <td>NaN</td>\n",
|
|
1692
|
+
" <td>orange</td>\n",
|
|
1693
|
+
" <td>2</td>\n",
|
|
1694
|
+
" <td>3</td>\n",
|
|
1695
|
+
" <td>NaN</td>\n",
|
|
1696
|
+
" <td>orange</td>\n",
|
|
1697
|
+
" <td>pepper</td>\n",
|
|
1698
|
+
" <td>pepper</td>\n",
|
|
1699
|
+
" </tr>\n",
|
|
1700
|
+
" <tr>\n",
|
|
1701
|
+
" <th>14</th>\n",
|
|
1702
|
+
" <td>1</td>\n",
|
|
1703
|
+
" <td>4</td>\n",
|
|
1704
|
+
" <td>NaN</td>\n",
|
|
1705
|
+
" <td>green</td>\n",
|
|
1706
|
+
" <td>1</td>\n",
|
|
1707
|
+
" <td>4</td>\n",
|
|
1708
|
+
" <td>NaN</td>\n",
|
|
1709
|
+
" <td>green</td>\n",
|
|
1710
|
+
" <td>courgette</td>\n",
|
|
1711
|
+
" <td>courgette</td>\n",
|
|
1712
|
+
" </tr>\n",
|
|
1713
|
+
" <tr>\n",
|
|
1714
|
+
" <th>15</th>\n",
|
|
1715
|
+
" <td>1</td>\n",
|
|
1716
|
+
" <td>5</td>\n",
|
|
1717
|
+
" <td>NaN</td>\n",
|
|
1718
|
+
" <td>green</td>\n",
|
|
1719
|
+
" <td>1</td>\n",
|
|
1720
|
+
" <td>5</td>\n",
|
|
1721
|
+
" <td>NaN</td>\n",
|
|
1722
|
+
" <td>green</td>\n",
|
|
1723
|
+
" <td>pepper</td>\n",
|
|
1724
|
+
" <td>pepper</td>\n",
|
|
1725
|
+
" </tr>\n",
|
|
1726
|
+
" <tr>\n",
|
|
1727
|
+
" <th>16</th>\n",
|
|
1728
|
+
" <td>2</td>\n",
|
|
1729
|
+
" <td>6</td>\n",
|
|
1730
|
+
" <td>NaN</td>\n",
|
|
1731
|
+
" <td>red</td>\n",
|
|
1732
|
+
" <td>2</td>\n",
|
|
1733
|
+
" <td>6</td>\n",
|
|
1734
|
+
" <td>NaN</td>\n",
|
|
1735
|
+
" <td>red</td>\n",
|
|
1736
|
+
" <td>tomato</td>\n",
|
|
1737
|
+
" <td>tomato</td>\n",
|
|
1738
|
+
" </tr>\n",
|
|
1739
|
+
" <tr>\n",
|
|
1740
|
+
" <th>17</th>\n",
|
|
1741
|
+
" <td>1</td>\n",
|
|
1742
|
+
" <td>7</td>\n",
|
|
1743
|
+
" <td>NaN</td>\n",
|
|
1744
|
+
" <td>yellow</td>\n",
|
|
1745
|
+
" <td>1</td>\n",
|
|
1746
|
+
" <td>7</td>\n",
|
|
1747
|
+
" <td>NaN</td>\n",
|
|
1748
|
+
" <td>yellow</td>\n",
|
|
1749
|
+
" <td>peper</td>\n",
|
|
1750
|
+
" <td>peper</td>\n",
|
|
1751
|
+
" </tr>\n",
|
|
1752
|
+
" <tr>\n",
|
|
1753
|
+
" <th>18</th>\n",
|
|
1754
|
+
" <td>2</td>\n",
|
|
1755
|
+
" <td>8</td>\n",
|
|
1756
|
+
" <td>NaN</td>\n",
|
|
1757
|
+
" <td>orange</td>\n",
|
|
1758
|
+
" <td>2</td>\n",
|
|
1759
|
+
" <td>8</td>\n",
|
|
1760
|
+
" <td>NaN</td>\n",
|
|
1761
|
+
" <td>orange</td>\n",
|
|
1762
|
+
" <td>pepper</td>\n",
|
|
1763
|
+
" <td>pepper</td>\n",
|
|
1764
|
+
" </tr>\n",
|
|
1765
|
+
" <tr>\n",
|
|
1766
|
+
" <th>19</th>\n",
|
|
1767
|
+
" <td>1</td>\n",
|
|
1768
|
+
" <td>9</td>\n",
|
|
1769
|
+
" <td>NaN</td>\n",
|
|
1770
|
+
" <td>green</td>\n",
|
|
1771
|
+
" <td>1</td>\n",
|
|
1772
|
+
" <td>9</td>\n",
|
|
1773
|
+
" <td>NaN</td>\n",
|
|
1774
|
+
" <td>green</td>\n",
|
|
1775
|
+
" <td>courgette</td>\n",
|
|
1776
|
+
" <td>courgette</td>\n",
|
|
1777
|
+
" </tr>\n",
|
|
1778
|
+
" </tbody>\n",
|
|
1779
|
+
"</table>\n",
|
|
1780
|
+
"</div>"
|
|
1781
|
+
],
|
|
1782
|
+
"text/plain": [
|
|
1783
|
+
" summer winter summer winter\n",
|
|
1784
|
+
" group_id id fruits colors group_id id fruits colors vegetables vegetables\n",
|
|
1785
|
+
"0 1 0 apple green 1 0 apple green NaN NaN\n",
|
|
1786
|
+
"1 2 1 apple red 2 1 apple red NaN NaN\n",
|
|
1787
|
+
"2 1 2 lemon yellow 1 2 lemon yellow NaN NaN\n",
|
|
1788
|
+
"3 2 3 kaki orange 2 3 kaki orange NaN NaN\n",
|
|
1789
|
+
"4 1 4 pear green 1 4 pear green NaN NaN\n",
|
|
1790
|
+
"5 1 5 apple green 1 5 apple green NaN NaN\n",
|
|
1791
|
+
"6 2 6 apple red 2 6 apple red NaN NaN\n",
|
|
1792
|
+
"7 1 7 lemon yellow 1 7 lemon yellow NaN NaN\n",
|
|
1793
|
+
"8 2 8 kaki orange 2 8 kaki orange NaN NaN\n",
|
|
1794
|
+
"9 1 9 pear green 1 9 pear green NaN NaN\n",
|
|
1795
|
+
"10 1 0 NaN green 1 0 NaN green pepper pepper\n",
|
|
1796
|
+
"11 2 1 NaN red 2 1 NaN red tomato tomato\n",
|
|
1797
|
+
"12 1 2 NaN yellow 1 2 NaN yellow peper peper\n",
|
|
1798
|
+
"13 2 3 NaN orange 2 3 NaN orange pepper pepper\n",
|
|
1799
|
+
"14 1 4 NaN green 1 4 NaN green courgette courgette\n",
|
|
1800
|
+
"15 1 5 NaN green 1 5 NaN green pepper pepper\n",
|
|
1801
|
+
"16 2 6 NaN red 2 6 NaN red tomato tomato\n",
|
|
1802
|
+
"17 1 7 NaN yellow 1 7 NaN yellow peper peper\n",
|
|
1803
|
+
"18 2 8 NaN orange 2 8 NaN orange pepper pepper\n",
|
|
1804
|
+
"19 1 9 NaN green 1 9 NaN green courgette courgette"
|
|
1805
|
+
]
|
|
1806
|
+
},
|
|
1807
|
+
"execution_count": 228,
|
|
1808
|
+
"metadata": {},
|
|
1809
|
+
"output_type": "execute_result"
|
|
1810
|
+
}
|
|
1811
|
+
],
|
|
1812
|
+
"source": [
|
|
1813
|
+
"pd.concat([DF1,DF2],axis=0, ignore_index=True)"
|
|
1814
|
+
]
|
|
1815
|
+
},
|
|
1816
|
+
{
|
|
1817
|
+
"cell_type": "markdown",
|
|
1818
|
+
"metadata": {},
|
|
1819
|
+
"source": [
|
|
1820
|
+
"### Setting tuple value in multi-index columns df"
|
|
1821
|
+
]
|
|
1822
|
+
},
|
|
1823
|
+
{
|
|
1824
|
+
"cell_type": "code",
|
|
1825
|
+
"execution_count": 237,
|
|
1826
|
+
"metadata": {},
|
|
1827
|
+
"outputs": [
|
|
1828
|
+
{
|
|
1829
|
+
"data": {
|
|
1830
|
+
"text/html": [
|
|
1831
|
+
"<div>\n",
|
|
1832
|
+
"<style scoped>\n",
|
|
1833
|
+
" .dataframe tbody tr th:only-of-type {\n",
|
|
1834
|
+
" vertical-align: middle;\n",
|
|
1835
|
+
" }\n",
|
|
1836
|
+
"\n",
|
|
1837
|
+
" .dataframe tbody tr th {\n",
|
|
1838
|
+
" vertical-align: top;\n",
|
|
1839
|
+
" }\n",
|
|
1840
|
+
"\n",
|
|
1841
|
+
" .dataframe thead tr th {\n",
|
|
1842
|
+
" text-align: left;\n",
|
|
1843
|
+
" }\n",
|
|
1844
|
+
"</style>\n",
|
|
1845
|
+
"<table border=\"1\" class=\"dataframe\">\n",
|
|
1846
|
+
" <thead>\n",
|
|
1847
|
+
" <tr>\n",
|
|
1848
|
+
" <th></th>\n",
|
|
1849
|
+
" <th colspan=\"4\" halign=\"left\">summer</th>\n",
|
|
1850
|
+
" <th colspan=\"4\" halign=\"left\">winter</th>\n",
|
|
1851
|
+
" <th>TVA</th>\n",
|
|
1852
|
+
" </tr>\n",
|
|
1853
|
+
" <tr>\n",
|
|
1854
|
+
" <th></th>\n",
|
|
1855
|
+
" <th>group_id</th>\n",
|
|
1856
|
+
" <th>id</th>\n",
|
|
1857
|
+
" <th>fruits</th>\n",
|
|
1858
|
+
" <th>colors</th>\n",
|
|
1859
|
+
" <th>group_id</th>\n",
|
|
1860
|
+
" <th>id</th>\n",
|
|
1861
|
+
" <th>fruits</th>\n",
|
|
1862
|
+
" <th>colors</th>\n",
|
|
1863
|
+
" <th></th>\n",
|
|
1864
|
+
" </tr>\n",
|
|
1865
|
+
" </thead>\n",
|
|
1866
|
+
" <tbody>\n",
|
|
1867
|
+
" <tr>\n",
|
|
1868
|
+
" <th>0</th>\n",
|
|
1869
|
+
" <td>1</td>\n",
|
|
1870
|
+
" <td>0</td>\n",
|
|
1871
|
+
" <td>apple</td>\n",
|
|
1872
|
+
" <td>green</td>\n",
|
|
1873
|
+
" <td>1</td>\n",
|
|
1874
|
+
" <td>0</td>\n",
|
|
1875
|
+
" <td>apple</td>\n",
|
|
1876
|
+
" <td>green</td>\n",
|
|
1877
|
+
" <td>(1, 1)</td>\n",
|
|
1878
|
+
" </tr>\n",
|
|
1879
|
+
" <tr>\n",
|
|
1880
|
+
" <th>1</th>\n",
|
|
1881
|
+
" <td>2</td>\n",
|
|
1882
|
+
" <td>1</td>\n",
|
|
1883
|
+
" <td>apple</td>\n",
|
|
1884
|
+
" <td>red</td>\n",
|
|
1885
|
+
" <td>2</td>\n",
|
|
1886
|
+
" <td>1</td>\n",
|
|
1887
|
+
" <td>apple</td>\n",
|
|
1888
|
+
" <td>red</td>\n",
|
|
1889
|
+
" <td>(1, 1)</td>\n",
|
|
1890
|
+
" </tr>\n",
|
|
1891
|
+
" <tr>\n",
|
|
1892
|
+
" <th>2</th>\n",
|
|
1893
|
+
" <td>1</td>\n",
|
|
1894
|
+
" <td>2</td>\n",
|
|
1895
|
+
" <td>lemon</td>\n",
|
|
1896
|
+
" <td>yellow</td>\n",
|
|
1897
|
+
" <td>1</td>\n",
|
|
1898
|
+
" <td>2</td>\n",
|
|
1899
|
+
" <td>lemon</td>\n",
|
|
1900
|
+
" <td>yellow</td>\n",
|
|
1901
|
+
" <td>(1, 1)</td>\n",
|
|
1902
|
+
" </tr>\n",
|
|
1903
|
+
" <tr>\n",
|
|
1904
|
+
" <th>3</th>\n",
|
|
1905
|
+
" <td>2</td>\n",
|
|
1906
|
+
" <td>3</td>\n",
|
|
1907
|
+
" <td>kaki</td>\n",
|
|
1908
|
+
" <td>orange</td>\n",
|
|
1909
|
+
" <td>2</td>\n",
|
|
1910
|
+
" <td>3</td>\n",
|
|
1911
|
+
" <td>kaki</td>\n",
|
|
1912
|
+
" <td>orange</td>\n",
|
|
1913
|
+
" <td>(1, 1)</td>\n",
|
|
1914
|
+
" </tr>\n",
|
|
1915
|
+
" <tr>\n",
|
|
1916
|
+
" <th>4</th>\n",
|
|
1917
|
+
" <td>1</td>\n",
|
|
1918
|
+
" <td>4</td>\n",
|
|
1919
|
+
" <td>pear</td>\n",
|
|
1920
|
+
" <td>green</td>\n",
|
|
1921
|
+
" <td>1</td>\n",
|
|
1922
|
+
" <td>4</td>\n",
|
|
1923
|
+
" <td>pear</td>\n",
|
|
1924
|
+
" <td>green</td>\n",
|
|
1925
|
+
" <td>(1, 1)</td>\n",
|
|
1926
|
+
" </tr>\n",
|
|
1927
|
+
" <tr>\n",
|
|
1928
|
+
" <th>5</th>\n",
|
|
1929
|
+
" <td>1</td>\n",
|
|
1930
|
+
" <td>5</td>\n",
|
|
1931
|
+
" <td>apple</td>\n",
|
|
1932
|
+
" <td>green</td>\n",
|
|
1933
|
+
" <td>1</td>\n",
|
|
1934
|
+
" <td>5</td>\n",
|
|
1935
|
+
" <td>apple</td>\n",
|
|
1936
|
+
" <td>green</td>\n",
|
|
1937
|
+
" <td>(1, 1)</td>\n",
|
|
1938
|
+
" </tr>\n",
|
|
1939
|
+
" <tr>\n",
|
|
1940
|
+
" <th>6</th>\n",
|
|
1941
|
+
" <td>2</td>\n",
|
|
1942
|
+
" <td>6</td>\n",
|
|
1943
|
+
" <td>apple</td>\n",
|
|
1944
|
+
" <td>red</td>\n",
|
|
1945
|
+
" <td>2</td>\n",
|
|
1946
|
+
" <td>6</td>\n",
|
|
1947
|
+
" <td>apple</td>\n",
|
|
1948
|
+
" <td>red</td>\n",
|
|
1949
|
+
" <td>(1, 1)</td>\n",
|
|
1950
|
+
" </tr>\n",
|
|
1951
|
+
" <tr>\n",
|
|
1952
|
+
" <th>7</th>\n",
|
|
1953
|
+
" <td>1</td>\n",
|
|
1954
|
+
" <td>7</td>\n",
|
|
1955
|
+
" <td>lemon</td>\n",
|
|
1956
|
+
" <td>yellow</td>\n",
|
|
1957
|
+
" <td>1</td>\n",
|
|
1958
|
+
" <td>7</td>\n",
|
|
1959
|
+
" <td>lemon</td>\n",
|
|
1960
|
+
" <td>yellow</td>\n",
|
|
1961
|
+
" <td>(1, 1)</td>\n",
|
|
1962
|
+
" </tr>\n",
|
|
1963
|
+
" <tr>\n",
|
|
1964
|
+
" <th>8</th>\n",
|
|
1965
|
+
" <td>2</td>\n",
|
|
1966
|
+
" <td>8</td>\n",
|
|
1967
|
+
" <td>kaki</td>\n",
|
|
1968
|
+
" <td>orange</td>\n",
|
|
1969
|
+
" <td>2</td>\n",
|
|
1970
|
+
" <td>8</td>\n",
|
|
1971
|
+
" <td>kaki</td>\n",
|
|
1972
|
+
" <td>orange</td>\n",
|
|
1973
|
+
" <td>(1, 1)</td>\n",
|
|
1974
|
+
" </tr>\n",
|
|
1975
|
+
" <tr>\n",
|
|
1976
|
+
" <th>9</th>\n",
|
|
1977
|
+
" <td>1</td>\n",
|
|
1978
|
+
" <td>9</td>\n",
|
|
1979
|
+
" <td>pear</td>\n",
|
|
1980
|
+
" <td>green</td>\n",
|
|
1981
|
+
" <td>1</td>\n",
|
|
1982
|
+
" <td>9</td>\n",
|
|
1983
|
+
" <td>pear</td>\n",
|
|
1984
|
+
" <td>green</td>\n",
|
|
1985
|
+
" <td>(1, 1)</td>\n",
|
|
1986
|
+
" </tr>\n",
|
|
1987
|
+
" </tbody>\n",
|
|
1988
|
+
"</table>\n",
|
|
1989
|
+
"</div>"
|
|
1990
|
+
],
|
|
1991
|
+
"text/plain": [
|
|
1992
|
+
" summer winter TVA\n",
|
|
1993
|
+
" group_id id fruits colors group_id id fruits colors \n",
|
|
1994
|
+
"0 1 0 apple green 1 0 apple green (1, 1)\n",
|
|
1995
|
+
"1 2 1 apple red 2 1 apple red (1, 1)\n",
|
|
1996
|
+
"2 1 2 lemon yellow 1 2 lemon yellow (1, 1)\n",
|
|
1997
|
+
"3 2 3 kaki orange 2 3 kaki orange (1, 1)\n",
|
|
1998
|
+
"4 1 4 pear green 1 4 pear green (1, 1)\n",
|
|
1999
|
+
"5 1 5 apple green 1 5 apple green (1, 1)\n",
|
|
2000
|
+
"6 2 6 apple red 2 6 apple red (1, 1)\n",
|
|
2001
|
+
"7 1 7 lemon yellow 1 7 lemon yellow (1, 1)\n",
|
|
2002
|
+
"8 2 8 kaki orange 2 8 kaki orange (1, 1)\n",
|
|
2003
|
+
"9 1 9 pear green 1 9 pear green (1, 1)"
|
|
2004
|
+
]
|
|
2005
|
+
},
|
|
2006
|
+
"execution_count": 237,
|
|
2007
|
+
"metadata": {},
|
|
2008
|
+
"output_type": "execute_result"
|
|
2009
|
+
}
|
|
2010
|
+
],
|
|
2011
|
+
"source": [
|
|
2012
|
+
"DF1['TVA'] = [(1,1)]*len(DF1)\n",
|
|
2013
|
+
"DF1"
|
|
2014
|
+
]
|
|
2015
|
+
},
|
|
2016
|
+
{
|
|
2017
|
+
"cell_type": "code",
|
|
2018
|
+
"execution_count": 253,
|
|
2019
|
+
"metadata": {},
|
|
2020
|
+
"outputs": [
|
|
2021
|
+
{
|
|
2022
|
+
"name": "stdout",
|
|
2023
|
+
"output_type": "stream",
|
|
2024
|
+
"text": [
|
|
2025
|
+
"[(1, 1) (1, 1) (1, 1) (1, 1) (1, 1) (1, 1) (1, 1) (1, 1) (1, 1) (1, 1)]\n"
|
|
2026
|
+
]
|
|
2027
|
+
},
|
|
2028
|
+
{
|
|
2029
|
+
"data": {
|
|
2030
|
+
"text/plain": [
|
|
2031
|
+
"False"
|
|
2032
|
+
]
|
|
2033
|
+
},
|
|
2034
|
+
"execution_count": 253,
|
|
2035
|
+
"metadata": {},
|
|
2036
|
+
"output_type": "execute_result"
|
|
2037
|
+
}
|
|
2038
|
+
],
|
|
2039
|
+
"source": [
|
|
2040
|
+
"print(DF1['TVA'].to_numpy())\n",
|
|
2041
|
+
"\n",
|
|
2042
|
+
"0 in DF1['TVA'].iat[0]"
|
|
2043
|
+
]
|
|
2044
|
+
}
|
|
2045
|
+
],
|
|
2046
|
+
"metadata": {
|
|
2047
|
+
"kernelspec": {
|
|
2048
|
+
"display_name": "cellpose",
|
|
2049
|
+
"language": "python",
|
|
2050
|
+
"name": "python3"
|
|
2051
|
+
},
|
|
2052
|
+
"language_info": {
|
|
2053
|
+
"codemirror_mode": {
|
|
2054
|
+
"name": "ipython",
|
|
2055
|
+
"version": 3
|
|
2056
|
+
},
|
|
2057
|
+
"file_extension": ".py",
|
|
2058
|
+
"mimetype": "text/x-python",
|
|
2059
|
+
"name": "python",
|
|
2060
|
+
"nbconvert_exporter": "python",
|
|
2061
|
+
"pygments_lexer": "ipython3",
|
|
2062
|
+
"version": "3.8.16"
|
|
2063
|
+
}
|
|
2064
|
+
},
|
|
2065
|
+
"nbformat": 4,
|
|
2066
|
+
"nbformat_minor": 2
|
|
2067
|
+
}
|