sequenzo 0.1.19__cp39-cp39-win_amd64.whl → 0.1.21__cp39-cp39-win_amd64.whl
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- sequenzo/big_data/clara/utils/get_weighted_diss.c +194 -193
- sequenzo/big_data/clara/utils/get_weighted_diss.cp39-win_amd64.pyd +0 -0
- sequenzo/clustering/clustering_c_code.cp39-win_amd64.pyd +0 -0
- sequenzo/clustering/hierarchical_clustering.py +2 -2
- sequenzo/define_sequence_data.py +4 -4
- sequenzo/dissimilarity_measures/c_code.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/get_distance_matrix.py +1 -1
- sequenzo/dissimilarity_measures/get_substitution_cost_matrix.py +1 -1
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.c +171 -171
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqconc.c +233 -232
- sequenzo/dissimilarity_measures/utils/seqconc.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdss.c +326 -325
- sequenzo/dissimilarity_measures/utils/seqdss.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqdur.c +326 -325
- sequenzo/dissimilarity_measures/utils/seqdur.cp39-win_amd64.pyd +0 -0
- sequenzo/dissimilarity_measures/utils/seqlength.c +226 -224
- sequenzo/dissimilarity_measures/utils/seqlength.cp39-win_amd64.pyd +0 -0
- sequenzo/multidomain/association_between_domains.py +1 -1
- sequenzo/multidomain/combt.py +4 -4
- sequenzo/multidomain/dat.py +11 -3
- sequenzo/multidomain/idcd.py +0 -2
- sequenzo/multidomain/linked_polyad.py +3 -4
- sequenzo/prefix_tree/__init__.py +1 -1
- sequenzo/prefix_tree/individual_level_indicators.py +2 -2
- sequenzo/sequence_characteristics/overall_cross_sectional_entropy.py +2 -2
- sequenzo/sequence_characteristics/plot_characteristics.py +2 -2
- sequenzo/sequence_characteristics/simple_characteristics.py +2 -2
- sequenzo/suffix_tree/__init__.py +1 -1
- sequenzo/suffix_tree/individual_level_indicators.py +3 -3
- sequenzo/visualization/plot_single_medoid.py +2 -2
- sequenzo/visualization/plot_transition_matrix.py +1 -1
- sequenzo/visualization/utils/utils.py +2 -2
- sequenzo/with_event_history_analysis/sequence_analysis_multi_state_model.py +1 -1
- {sequenzo-0.1.19.dist-info → sequenzo-0.1.21.dist-info}/METADATA +37 -6
- {sequenzo-0.1.19.dist-info → sequenzo-0.1.21.dist-info}/RECORD +39 -45
- sequenzo/big_data/clara/utils/get_weighted_diss.pyx +0 -16
- sequenzo/dissimilarity_measures/utils/get_sm_trate_substitution_cost_matrix.pyx +0 -95
- sequenzo/dissimilarity_measures/utils/seqconc.pyx +0 -26
- sequenzo/dissimilarity_measures/utils/seqdss.pyx +0 -33
- sequenzo/dissimilarity_measures/utils/seqdur.pyx +0 -34
- sequenzo/dissimilarity_measures/utils/seqlength.pyx +0 -19
- {sequenzo-0.1.19.dist-info → sequenzo-0.1.21.dist-info}/WHEEL +0 -0
- {sequenzo-0.1.19.dist-info → sequenzo-0.1.21.dist-info}/licenses/LICENSE +0 -0
- {sequenzo-0.1.19.dist-info → sequenzo-0.1.21.dist-info}/top_level.txt +0 -0
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typedef npy_double __pyx_t_5numpy_double_t;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":800
|
|
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|
* ctypedef npy_double float_t
|
|
1747
1747
|
* ctypedef npy_double double_t
|
|
1748
1748
|
* ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
|
|
@@ -1791,7 +1791,7 @@ static CYTHON_INLINE __pyx_t_long_double_complex __pyx_t_long_double_complex_fro
|
|
|
1791
1791
|
|
|
1792
1792
|
/*--- Type declarations ---*/
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1096
|
|
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|
*
|
|
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1796
|
* # Iterator API added in v1.6
|
|
1797
1797
|
* ctypedef int (*NpyIter_IterNextFunc)(NpyIter* it) noexcept nogil # <<<<<<<<<<<<<<
|
|
@@ -1800,7 +1800,7 @@ static CYTHON_INLINE __pyx_t_long_double_complex __pyx_t_long_double_complex_fro
|
|
|
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1800
|
*/
|
|
1801
1801
|
typedef int (*__pyx_t_5numpy_NpyIter_IterNextFunc)(NpyIter *);
|
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|
|
|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1097
|
|
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1804
|
* # Iterator API added in v1.6
|
|
1805
1805
|
* ctypedef int (*NpyIter_IterNextFunc)(NpyIter* it) noexcept nogil
|
|
1806
1806
|
* ctypedef void (*NpyIter_GetMultiIndexFunc)(NpyIter* it, npy_intp* outcoords) noexcept nogil # <<<<<<<<<<<<<<
|
|
@@ -3019,7 +3019,7 @@ static CYTHON_SMALL_CODE int __pyx_m_traverse(PyObject *m, visitproc visit, void
|
|
|
3019
3019
|
#endif
|
|
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3020
|
/* #### Code section: module_code ### */
|
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|
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|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":285
|
|
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3023
|
* cdef int type_num
|
|
3024
3024
|
*
|
|
3025
3025
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3030,7 +3030,7 @@ static CYTHON_SMALL_CODE int __pyx_m_traverse(PyObject *m, visitproc visit, void
|
|
|
3030
3030
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_Descr *__pyx_v_self) {
|
|
3031
3031
|
npy_intp __pyx_r;
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":287
|
|
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|
* @property
|
|
3035
3035
|
* cdef inline npy_intp itemsize(self) noexcept nogil:
|
|
3036
3036
|
* return PyDataType_ELSIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -3040,7 +3040,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
|
|
|
3040
3040
|
__pyx_r = PyDataType_ELSIZE(__pyx_v_self);
|
|
3041
3041
|
goto __pyx_L0;
|
|
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3042
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":285
|
|
3044
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|
* cdef int type_num
|
|
3045
3045
|
*
|
|
3046
3046
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3053,7 +3053,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
|
|
|
3053
3053
|
return __pyx_r;
|
|
3054
3054
|
}
|
|
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3055
|
|
|
3056
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3056
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":289
|
|
3057
3057
|
* return PyDataType_ELSIZE(self)
|
|
3058
3058
|
*
|
|
3059
3059
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3064,7 +3064,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_8itemsize_itemsize(PyArray_D
|
|
|
3064
3064
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray_Descr *__pyx_v_self) {
|
|
3065
3065
|
npy_intp __pyx_r;
|
|
3066
3066
|
|
|
3067
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3067
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":291
|
|
3068
3068
|
* @property
|
|
3069
3069
|
* cdef inline npy_intp alignment(self) noexcept nogil:
|
|
3070
3070
|
* return PyDataType_ALIGNMENT(self) # <<<<<<<<<<<<<<
|
|
@@ -3074,7 +3074,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray
|
|
|
3074
3074
|
__pyx_r = PyDataType_ALIGNMENT(__pyx_v_self);
|
|
3075
3075
|
goto __pyx_L0;
|
|
3076
3076
|
|
|
3077
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3077
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":289
|
|
3078
3078
|
* return PyDataType_ELSIZE(self)
|
|
3079
3079
|
*
|
|
3080
3080
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3087,7 +3087,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_5dtype_9alignment_alignment(PyArray
|
|
|
3087
3087
|
return __pyx_r;
|
|
3088
3088
|
}
|
|
3089
3089
|
|
|
3090
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3090
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":295
|
|
3091
3091
|
* # Use fields/names with care as they may be NULL. You must check
|
|
3092
3092
|
* # for this using PyDataType_HASFIELDS.
|
|
3093
3093
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3101,7 +3101,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
|
|
|
3101
3101
|
PyObject *__pyx_t_1;
|
|
3102
3102
|
__Pyx_RefNannySetupContext("fields", 0);
|
|
3103
3103
|
|
|
3104
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3104
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":297
|
|
3105
3105
|
* @property
|
|
3106
3106
|
* cdef inline object fields(self):
|
|
3107
3107
|
* return <object>PyDataType_FIELDS(self) # <<<<<<<<<<<<<<
|
|
@@ -3114,7 +3114,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
|
|
|
3114
3114
|
__pyx_r = ((PyObject *)__pyx_t_1);
|
|
3115
3115
|
goto __pyx_L0;
|
|
3116
3116
|
|
|
3117
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3117
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":295
|
|
3118
3118
|
* # Use fields/names with care as they may be NULL. You must check
|
|
3119
3119
|
* # for this using PyDataType_HASFIELDS.
|
|
3120
3120
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3129,7 +3129,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_6fields_fields(PyArray_Desc
|
|
|
3129
3129
|
return __pyx_r;
|
|
3130
3130
|
}
|
|
3131
3131
|
|
|
3132
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3132
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":299
|
|
3133
3133
|
* return <object>PyDataType_FIELDS(self)
|
|
3134
3134
|
*
|
|
3135
3135
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3143,7 +3143,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3143
3143
|
PyObject *__pyx_t_1;
|
|
3144
3144
|
__Pyx_RefNannySetupContext("names", 0);
|
|
3145
3145
|
|
|
3146
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3146
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":301
|
|
3147
3147
|
* @property
|
|
3148
3148
|
* cdef inline tuple names(self):
|
|
3149
3149
|
* return <tuple>PyDataType_NAMES(self) # <<<<<<<<<<<<<<
|
|
@@ -3156,7 +3156,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3156
3156
|
__pyx_r = ((PyObject*)__pyx_t_1);
|
|
3157
3157
|
goto __pyx_L0;
|
|
3158
3158
|
|
|
3159
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3159
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":299
|
|
3160
3160
|
* return <object>PyDataType_FIELDS(self)
|
|
3161
3161
|
*
|
|
3162
3162
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3171,7 +3171,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3171
3171
|
return __pyx_r;
|
|
3172
3172
|
}
|
|
3173
3173
|
|
|
3174
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3174
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":306
|
|
3175
3175
|
* # valid (the pointer can be NULL). Most users should access
|
|
3176
3176
|
* # this field via the inline helper method PyDataType_SHAPE.
|
|
3177
3177
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3182,7 +3182,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_5dtype_5names_names(PyArray_Descr
|
|
|
3182
3182
|
static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarray(PyArray_Descr *__pyx_v_self) {
|
|
3183
3183
|
PyArray_ArrayDescr *__pyx_r;
|
|
3184
3184
|
|
|
3185
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3185
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":308
|
|
3186
3186
|
* @property
|
|
3187
3187
|
* cdef inline PyArray_ArrayDescr* subarray(self) noexcept nogil:
|
|
3188
3188
|
* return PyDataType_SUBARRAY(self) # <<<<<<<<<<<<<<
|
|
@@ -3192,7 +3192,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3192
3192
|
__pyx_r = PyDataType_SUBARRAY(__pyx_v_self);
|
|
3193
3193
|
goto __pyx_L0;
|
|
3194
3194
|
|
|
3195
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3195
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":306
|
|
3196
3196
|
* # valid (the pointer can be NULL). Most users should access
|
|
3197
3197
|
* # this field via the inline helper method PyDataType_SHAPE.
|
|
3198
3198
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3205,7 +3205,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3205
3205
|
return __pyx_r;
|
|
3206
3206
|
}
|
|
3207
3207
|
|
|
3208
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3208
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":310
|
|
3209
3209
|
* return PyDataType_SUBARRAY(self)
|
|
3210
3210
|
*
|
|
3211
3211
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3216,7 +3216,7 @@ static CYTHON_INLINE PyArray_ArrayDescr *__pyx_f_5numpy_5dtype_8subarray_subarra
|
|
|
3216
3216
|
static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr *__pyx_v_self) {
|
|
3217
3217
|
npy_uint64 __pyx_r;
|
|
3218
3218
|
|
|
3219
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3219
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":313
|
|
3220
3220
|
* cdef inline npy_uint64 flags(self) noexcept nogil:
|
|
3221
3221
|
* """The data types flags."""
|
|
3222
3222
|
* return PyDataType_FLAGS(self) # <<<<<<<<<<<<<<
|
|
@@ -3226,7 +3226,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3226
3226
|
__pyx_r = PyDataType_FLAGS(__pyx_v_self);
|
|
3227
3227
|
goto __pyx_L0;
|
|
3228
3228
|
|
|
3229
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3229
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":310
|
|
3230
3230
|
* return PyDataType_SUBARRAY(self)
|
|
3231
3231
|
*
|
|
3232
3232
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3239,7 +3239,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3239
3239
|
return __pyx_r;
|
|
3240
3240
|
}
|
|
3241
3241
|
|
|
3242
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3242
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":322
|
|
3243
3243
|
* ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]:
|
|
3244
3244
|
*
|
|
3245
3245
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3250,7 +3250,7 @@ static CYTHON_INLINE npy_uint64 __pyx_f_5numpy_5dtype_5flags_flags(PyArray_Descr
|
|
|
3250
3250
|
static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3251
3251
|
int __pyx_r;
|
|
3252
3252
|
|
|
3253
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3253
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":325
|
|
3254
3254
|
* cdef inline int numiter(self) noexcept nogil:
|
|
3255
3255
|
* """The number of arrays that need to be broadcast to the same shape."""
|
|
3256
3256
|
* return PyArray_MultiIter_NUMITER(self) # <<<<<<<<<<<<<<
|
|
@@ -3260,7 +3260,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3260
3260
|
__pyx_r = PyArray_MultiIter_NUMITER(__pyx_v_self);
|
|
3261
3261
|
goto __pyx_L0;
|
|
3262
3262
|
|
|
3263
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3263
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":322
|
|
3264
3264
|
* ctypedef class numpy.broadcast [object PyArrayMultiIterObject, check_size ignore]:
|
|
3265
3265
|
*
|
|
3266
3266
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3273,7 +3273,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3273
3273
|
return __pyx_r;
|
|
3274
3274
|
}
|
|
3275
3275
|
|
|
3276
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3276
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":327
|
|
3277
3277
|
* return PyArray_MultiIter_NUMITER(self)
|
|
3278
3278
|
*
|
|
3279
3279
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3284,7 +3284,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_7numiter_numiter(PyArrayMulti
|
|
|
3284
3284
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3285
3285
|
npy_intp __pyx_r;
|
|
3286
3286
|
|
|
3287
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3287
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":330
|
|
3288
3288
|
* cdef inline npy_intp size(self) noexcept nogil:
|
|
3289
3289
|
* """The total broadcasted size."""
|
|
3290
3290
|
* return PyArray_MultiIter_SIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -3294,7 +3294,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3294
3294
|
__pyx_r = PyArray_MultiIter_SIZE(__pyx_v_self);
|
|
3295
3295
|
goto __pyx_L0;
|
|
3296
3296
|
|
|
3297
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3297
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":327
|
|
3298
3298
|
* return PyArray_MultiIter_NUMITER(self)
|
|
3299
3299
|
*
|
|
3300
3300
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3307,7 +3307,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3307
3307
|
return __pyx_r;
|
|
3308
3308
|
}
|
|
3309
3309
|
|
|
3310
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3310
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":332
|
|
3311
3311
|
* return PyArray_MultiIter_SIZE(self)
|
|
3312
3312
|
*
|
|
3313
3313
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3318,7 +3318,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_4size_size(PyArrayMultiI
|
|
|
3318
3318
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3319
3319
|
npy_intp __pyx_r;
|
|
3320
3320
|
|
|
3321
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3321
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":335
|
|
3322
3322
|
* cdef inline npy_intp index(self) noexcept nogil:
|
|
3323
3323
|
* """The current (1-d) index into the broadcasted result."""
|
|
3324
3324
|
* return PyArray_MultiIter_INDEX(self) # <<<<<<<<<<<<<<
|
|
@@ -3328,7 +3328,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3328
3328
|
__pyx_r = PyArray_MultiIter_INDEX(__pyx_v_self);
|
|
3329
3329
|
goto __pyx_L0;
|
|
3330
3330
|
|
|
3331
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3331
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":332
|
|
3332
3332
|
* return PyArray_MultiIter_SIZE(self)
|
|
3333
3333
|
*
|
|
3334
3334
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3341,7 +3341,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3341
3341
|
return __pyx_r;
|
|
3342
3342
|
}
|
|
3343
3343
|
|
|
3344
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3344
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":337
|
|
3345
3345
|
* return PyArray_MultiIter_INDEX(self)
|
|
3346
3346
|
*
|
|
3347
3347
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3352,7 +3352,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_9broadcast_5index_index(PyArrayMult
|
|
|
3352
3352
|
static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3353
3353
|
int __pyx_r;
|
|
3354
3354
|
|
|
3355
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3355
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":340
|
|
3356
3356
|
* cdef inline int nd(self) noexcept nogil:
|
|
3357
3357
|
* """The number of dimensions in the broadcasted result."""
|
|
3358
3358
|
* return PyArray_MultiIter_NDIM(self) # <<<<<<<<<<<<<<
|
|
@@ -3362,7 +3362,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3362
3362
|
__pyx_r = PyArray_MultiIter_NDIM(__pyx_v_self);
|
|
3363
3363
|
goto __pyx_L0;
|
|
3364
3364
|
|
|
3365
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3365
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":337
|
|
3366
3366
|
* return PyArray_MultiIter_INDEX(self)
|
|
3367
3367
|
*
|
|
3368
3368
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3375,7 +3375,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3375
3375
|
return __pyx_r;
|
|
3376
3376
|
}
|
|
3377
3377
|
|
|
3378
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3378
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":342
|
|
3379
3379
|
* return PyArray_MultiIter_NDIM(self)
|
|
3380
3380
|
*
|
|
3381
3381
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3386,7 +3386,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_9broadcast_2nd_nd(PyArrayMultiIterObject
|
|
|
3386
3386
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3387
3387
|
npy_intp *__pyx_r;
|
|
3388
3388
|
|
|
3389
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3389
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":345
|
|
3390
3390
|
* cdef inline npy_intp* dimensions(self) noexcept nogil:
|
|
3391
3391
|
* """The shape of the broadcasted result."""
|
|
3392
3392
|
* return PyArray_MultiIter_DIMS(self) # <<<<<<<<<<<<<<
|
|
@@ -3396,7 +3396,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3396
3396
|
__pyx_r = PyArray_MultiIter_DIMS(__pyx_v_self);
|
|
3397
3397
|
goto __pyx_L0;
|
|
3398
3398
|
|
|
3399
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3399
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":342
|
|
3400
3400
|
* return PyArray_MultiIter_NDIM(self)
|
|
3401
3401
|
*
|
|
3402
3402
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3409,7 +3409,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3409
3409
|
return __pyx_r;
|
|
3410
3410
|
}
|
|
3411
3411
|
|
|
3412
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3412
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":347
|
|
3413
3413
|
* return PyArray_MultiIter_DIMS(self)
|
|
3414
3414
|
*
|
|
3415
3415
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3420,7 +3420,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_9broadcast_10dimensions_dimensions
|
|
|
3420
3420
|
static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiIterObject *__pyx_v_self) {
|
|
3421
3421
|
void **__pyx_r;
|
|
3422
3422
|
|
|
3423
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3423
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":351
|
|
3424
3424
|
* """An array of iterator objects that holds the iterators for the arrays to be broadcast together.
|
|
3425
3425
|
* On return, the iterators are adjusted for broadcasting."""
|
|
3426
3426
|
* return PyArray_MultiIter_ITERS(self) # <<<<<<<<<<<<<<
|
|
@@ -3430,7 +3430,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3430
3430
|
__pyx_r = PyArray_MultiIter_ITERS(__pyx_v_self);
|
|
3431
3431
|
goto __pyx_L0;
|
|
3432
3432
|
|
|
3433
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3433
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":347
|
|
3434
3434
|
* return PyArray_MultiIter_DIMS(self)
|
|
3435
3435
|
*
|
|
3436
3436
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3443,7 +3443,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3443
3443
|
return __pyx_r;
|
|
3444
3444
|
}
|
|
3445
3445
|
|
|
3446
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3446
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":365
|
|
3447
3447
|
* # Instead, we use properties that map to the corresponding C-API functions.
|
|
3448
3448
|
*
|
|
3449
3449
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3454,7 +3454,7 @@ static CYTHON_INLINE void **__pyx_f_5numpy_9broadcast_5iters_iters(PyArrayMultiI
|
|
|
3454
3454
|
static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject *__pyx_v_self) {
|
|
3455
3455
|
PyObject *__pyx_r;
|
|
3456
3456
|
|
|
3457
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3457
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":369
|
|
3458
3458
|
* """Returns a borrowed reference to the object owning the data/memory.
|
|
3459
3459
|
* """
|
|
3460
3460
|
* return PyArray_BASE(self) # <<<<<<<<<<<<<<
|
|
@@ -3464,7 +3464,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
3464
3464
|
__pyx_r = PyArray_BASE(__pyx_v_self);
|
|
3465
3465
|
goto __pyx_L0;
|
|
3466
3466
|
|
|
3467
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3467
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":365
|
|
3468
3468
|
* # Instead, we use properties that map to the corresponding C-API functions.
|
|
3469
3469
|
*
|
|
3470
3470
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3477,7 +3477,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
3477
3477
|
return __pyx_r;
|
|
3478
3478
|
}
|
|
3479
3479
|
|
|
3480
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3480
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":371
|
|
3481
3481
|
* return PyArray_BASE(self)
|
|
3482
3482
|
*
|
|
3483
3483
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3491,7 +3491,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3491
3491
|
PyArray_Descr *__pyx_t_1;
|
|
3492
3492
|
__Pyx_RefNannySetupContext("descr", 0);
|
|
3493
3493
|
|
|
3494
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3494
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":375
|
|
3495
3495
|
* """Returns an owned reference to the dtype of the array.
|
|
3496
3496
|
* """
|
|
3497
3497
|
* return <dtype>PyArray_DESCR(self) # <<<<<<<<<<<<<<
|
|
@@ -3504,7 +3504,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3504
3504
|
__pyx_r = ((PyArray_Descr *)__pyx_t_1);
|
|
3505
3505
|
goto __pyx_L0;
|
|
3506
3506
|
|
|
3507
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3507
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":371
|
|
3508
3508
|
* return PyArray_BASE(self)
|
|
3509
3509
|
*
|
|
3510
3510
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3519,7 +3519,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3519
3519
|
return __pyx_r;
|
|
3520
3520
|
}
|
|
3521
3521
|
|
|
3522
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3522
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":377
|
|
3523
3523
|
* return <dtype>PyArray_DESCR(self)
|
|
3524
3524
|
*
|
|
3525
3525
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3530,7 +3530,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
3530
3530
|
static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx_v_self) {
|
|
3531
3531
|
int __pyx_r;
|
|
3532
3532
|
|
|
3533
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3533
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":381
|
|
3534
3534
|
* """Returns the number of dimensions in the array.
|
|
3535
3535
|
* """
|
|
3536
3536
|
* return PyArray_NDIM(self) # <<<<<<<<<<<<<<
|
|
@@ -3540,7 +3540,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
3540
3540
|
__pyx_r = PyArray_NDIM(__pyx_v_self);
|
|
3541
3541
|
goto __pyx_L0;
|
|
3542
3542
|
|
|
3543
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3543
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":377
|
|
3544
3544
|
* return <dtype>PyArray_DESCR(self)
|
|
3545
3545
|
*
|
|
3546
3546
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3553,7 +3553,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
3553
3553
|
return __pyx_r;
|
|
3554
3554
|
}
|
|
3555
3555
|
|
|
3556
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
3556
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":383
|
|
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|
* return PyArray_NDIM(self)
|
|
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|
*
|
|
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|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3564,7 +3564,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
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3564
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObject *__pyx_v_self) {
|
|
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|
npy_intp *__pyx_r;
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":389
|
|
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|
* Can return NULL for 0-dimensional arrays.
|
|
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|
* """
|
|
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|
* return PyArray_DIMS(self) # <<<<<<<<<<<<<<
|
|
@@ -3574,7 +3574,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
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3574
|
__pyx_r = PyArray_DIMS(__pyx_v_self);
|
|
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|
goto __pyx_L0;
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":383
|
|
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|
* return PyArray_NDIM(self)
|
|
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|
*
|
|
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3580
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3587,7 +3587,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
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3587
|
return __pyx_r;
|
|
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|
}
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":391
|
|
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|
* return PyArray_DIMS(self)
|
|
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|
*
|
|
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|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3598,7 +3598,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
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3598
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayObject *__pyx_v_self) {
|
|
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|
npy_intp *__pyx_r;
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":396
|
|
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|
* The number of elements matches the number of dimensions of the array (ndim).
|
|
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|
* """
|
|
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3604
|
* return PyArray_STRIDES(self) # <<<<<<<<<<<<<<
|
|
@@ -3608,7 +3608,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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3608
|
__pyx_r = PyArray_STRIDES(__pyx_v_self);
|
|
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|
goto __pyx_L0;
|
|
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|
|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":391
|
|
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|
* return PyArray_DIMS(self)
|
|
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3613
|
*
|
|
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3614
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3621,7 +3621,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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3621
|
return __pyx_r;
|
|
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|
}
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":398
|
|
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|
* return PyArray_STRIDES(self)
|
|
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3626
|
*
|
|
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3627
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3632,7 +3632,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
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3632
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *__pyx_v_self) {
|
|
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|
npy_intp __pyx_r;
|
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|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":402
|
|
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|
* """Returns the total size (in number of elements) of the array.
|
|
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|
* """
|
|
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3638
|
* return PyArray_SIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -3642,7 +3642,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
3642
3642
|
__pyx_r = PyArray_SIZE(__pyx_v_self);
|
|
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3643
|
goto __pyx_L0;
|
|
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3644
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":398
|
|
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3646
|
* return PyArray_STRIDES(self)
|
|
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3647
|
*
|
|
3648
3648
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3655,7 +3655,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
3655
3655
|
return __pyx_r;
|
|
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|
}
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":404
|
|
3659
3659
|
* return PyArray_SIZE(self)
|
|
3660
3660
|
*
|
|
3661
3661
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3666,7 +3666,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
3666
3666
|
static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__pyx_v_self) {
|
|
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|
char *__pyx_r;
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":411
|
|
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|
* of `PyArray_DATA()` instead, which returns a 'void*'.
|
|
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3671
|
* """
|
|
3672
3672
|
* return PyArray_BYTES(self) # <<<<<<<<<<<<<<
|
|
@@ -3676,7 +3676,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
|
|
|
3676
3676
|
__pyx_r = PyArray_BYTES(__pyx_v_self);
|
|
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3677
|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":404
|
|
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3680
|
* return PyArray_SIZE(self)
|
|
3681
3681
|
*
|
|
3682
3682
|
* @property # <<<<<<<<<<<<<<
|
|
@@ -3689,7 +3689,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
|
|
|
3689
3689
|
return __pyx_r;
|
|
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|
}
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":807
|
|
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|
* ctypedef long double complex clongdouble_t
|
|
3694
3694
|
*
|
|
3695
3695
|
* cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
|
|
@@ -3706,7 +3706,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
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|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 0);
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":808
|
|
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|
*
|
|
3711
3711
|
* cdef inline object PyArray_MultiIterNew1(a):
|
|
3712
3712
|
* return PyArray_MultiIterNew(1, <void*>a) # <<<<<<<<<<<<<<
|
|
@@ -3720,7 +3720,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
3720
3720
|
__pyx_t_1 = 0;
|
|
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|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":807
|
|
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|
* ctypedef long double complex clongdouble_t
|
|
3725
3725
|
*
|
|
3726
3726
|
* cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
|
|
@@ -3739,7 +3739,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
3739
3739
|
return __pyx_r;
|
|
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|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":810
|
|
3743
3743
|
* return PyArray_MultiIterNew(1, <void*>a)
|
|
3744
3744
|
*
|
|
3745
3745
|
* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
|
|
@@ -3756,7 +3756,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
3756
3756
|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew2", 0);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":811
|
|
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3760
|
*
|
|
3761
3761
|
* cdef inline object PyArray_MultiIterNew2(a, b):
|
|
3762
3762
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b) # <<<<<<<<<<<<<<
|
|
@@ -3770,7 +3770,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
3770
3770
|
__pyx_t_1 = 0;
|
|
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|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":810
|
|
3774
3774
|
* return PyArray_MultiIterNew(1, <void*>a)
|
|
3775
3775
|
*
|
|
3776
3776
|
* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
|
|
@@ -3789,7 +3789,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
|
|
3789
3789
|
return __pyx_r;
|
|
3790
3790
|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":813
|
|
3793
3793
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
|
|
3794
3794
|
*
|
|
3795
3795
|
* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
|
|
@@ -3806,7 +3806,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
3806
3806
|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew3", 0);
|
|
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3808
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":814
|
|
3810
3810
|
*
|
|
3811
3811
|
* cdef inline object PyArray_MultiIterNew3(a, b, c):
|
|
3812
3812
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) # <<<<<<<<<<<<<<
|
|
@@ -3820,7 +3820,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
3820
3820
|
__pyx_t_1 = 0;
|
|
3821
3821
|
goto __pyx_L0;
|
|
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3822
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":813
|
|
3824
3824
|
* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
|
|
3825
3825
|
*
|
|
3826
3826
|
* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
|
|
@@ -3839,7 +3839,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
|
|
3839
3839
|
return __pyx_r;
|
|
3840
3840
|
}
|
|
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3841
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":816
|
|
3843
3843
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
|
|
3844
3844
|
*
|
|
3845
3845
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
|
|
@@ -3856,7 +3856,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
3856
3856
|
int __pyx_clineno = 0;
|
|
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|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew4", 0);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":817
|
|
3860
3860
|
*
|
|
3861
3861
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d):
|
|
3862
3862
|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) # <<<<<<<<<<<<<<
|
|
@@ -3870,7 +3870,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
3870
3870
|
__pyx_t_1 = 0;
|
|
3871
3871
|
goto __pyx_L0;
|
|
3872
3872
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":816
|
|
3874
3874
|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
|
|
3875
3875
|
*
|
|
3876
3876
|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
|
|
@@ -3889,7 +3889,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
3889
3889
|
return __pyx_r;
|
|
3890
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|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":819
|
|
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|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
|
|
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|
*
|
|
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|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
|
|
@@ -3906,7 +3906,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
|
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|
int __pyx_clineno = 0;
|
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|
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|
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-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":820
|
|
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|
*
|
|
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|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
|
|
3912
3912
|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) # <<<<<<<<<<<<<<
|
|
@@ -3920,7 +3920,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
|
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|
__pyx_t_1 = 0;
|
|
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|
goto __pyx_L0;
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":819
|
|
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|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
|
|
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|
*
|
|
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3926
|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
|
|
@@ -3939,7 +3939,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
|
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|
return __pyx_r;
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":822
|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
|
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|
*
|
|
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3945
|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -3954,7 +3954,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
PyObject *__pyx_t_2;
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":823
|
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|
*
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
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|
* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -3964,7 +3964,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
__pyx_t_1 = PyDataType_HASSUBARRAY(__pyx_v_d);
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":824
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
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|
* if PyDataType_HASSUBARRAY(d):
|
|
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|
* return <tuple>d.subarray.shape # <<<<<<<<<<<<<<
|
|
@@ -3977,7 +3977,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
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|
__pyx_r = ((PyObject*)__pyx_t_2);
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":823
|
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|
*
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
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|
* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -3986,7 +3986,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":826
|
|
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|
* return <tuple>d.subarray.shape
|
|
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|
* else:
|
|
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|
* return () # <<<<<<<<<<<<<<
|
|
@@ -4000,7 +4000,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
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goto __pyx_L0;
|
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|
|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
|
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|
*
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -4015,7 +4015,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
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|
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|
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* int _import_umath() except -1
|
|
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|
*
|
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|
* cdef inline void set_array_base(ndarray arr, object base) except *: # <<<<<<<<<<<<<<
|
|
@@ -4029,7 +4029,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1011
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|
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|
* cdef inline void set_array_base(ndarray arr, object base) except *:
|
|
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|
* Py_INCREF(base) # important to do this before stealing the reference below! # <<<<<<<<<<<<<<
|
|
@@ -4038,7 +4038,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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|
*/
|
|
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|
Py_INCREF(__pyx_v_base);
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1012
|
|
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|
* cdef inline void set_array_base(ndarray arr, object base) except *:
|
|
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|
* Py_INCREF(base) # important to do this before stealing the reference below!
|
|
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|
* PyArray_SetBaseObject(arr, base) # <<<<<<<<<<<<<<
|
|
@@ -4047,7 +4047,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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|
*/
|
|
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|
__pyx_t_1 = PyArray_SetBaseObject(__pyx_v_arr, __pyx_v_base); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(1, 1012, __pyx_L1_error)
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1010
|
|
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|
* int _import_umath() except -1
|
|
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|
*
|
|
4053
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|
* cdef inline void set_array_base(ndarray arr, object base) except *: # <<<<<<<<<<<<<<
|
|
@@ -4062,7 +4062,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
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|
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|
|
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|
* PyArray_SetBaseObject(arr, base)
|
|
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|
*
|
|
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|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -4077,7 +4077,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
int __pyx_t_1;
|
|
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|
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|
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|
|
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|
*
|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
4083
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|
* base = PyArray_BASE(arr) # <<<<<<<<<<<<<<
|
|
@@ -4086,7 +4086,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4086
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|
*/
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
4091
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|
* base = PyArray_BASE(arr)
|
|
4092
4092
|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -4096,7 +4096,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
__pyx_t_1 = (__pyx_v_base == NULL);
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1017
|
|
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|
* base = PyArray_BASE(arr)
|
|
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|
* if base is NULL:
|
|
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4102
|
* return None # <<<<<<<<<<<<<<
|
|
@@ -4107,7 +4107,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
__pyx_r = Py_None; __Pyx_INCREF(Py_None);
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
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+
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|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
4112
4112
|
* base = PyArray_BASE(arr)
|
|
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|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -4116,7 +4116,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
4116
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|
*/
|
|
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|
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|
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|
|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1018
|
|
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|
* if base is NULL:
|
|
4121
4121
|
* return None
|
|
4122
4122
|
* return <object>base # <<<<<<<<<<<<<<
|
|
@@ -4128,7 +4128,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
__pyx_r = ((PyObject *)__pyx_v_base);
|
|
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|
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|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
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|
|
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|
* PyArray_SetBaseObject(arr, base)
|
|
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|
*
|
|
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4134
|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -4143,7 +4143,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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|
return __pyx_r;
|
|
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|
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|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1022
|
|
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|
* # Versions of the import_* functions which are more suitable for
|
|
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4148
|
* # Cython code.
|
|
4149
4149
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4170,7 +4170,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
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|
int __pyx_clineno = 0;
|
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1023
|
|
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|
* # Cython code.
|
|
4175
4175
|
* cdef inline int import_array() except -1:
|
|
4176
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|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4186,7 +4186,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
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|
__Pyx_XGOTREF(__pyx_t_3);
|
|
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|
/*try:*/ {
|
|
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|
|
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1024
|
|
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|
* cdef inline int import_array() except -1:
|
|
4191
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|
* try:
|
|
4192
4192
|
* __pyx_import_array() # <<<<<<<<<<<<<<
|
|
@@ -4195,7 +4195,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4195
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|
*/
|
|
4196
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|
__pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1024, __pyx_L3_error)
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1023
|
|
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|
* # Cython code.
|
|
4200
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|
* cdef inline int import_array() except -1:
|
|
4201
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|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4209,7 +4209,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
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|
goto __pyx_L8_try_end;
|
|
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|
__pyx_L3_error:;
|
|
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|
|
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1025
|
|
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4213
|
* try:
|
|
4214
4214
|
* __pyx_import_array()
|
|
4215
4215
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4224,7 +4224,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4224
4224
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4225
4225
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
4226
4226
|
|
|
4227
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4227
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1026
|
|
4228
4228
|
* __pyx_import_array()
|
|
4229
4229
|
* except Exception:
|
|
4230
4230
|
* raise ImportError("numpy._core.multiarray failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4249,7 +4249,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4249
4249
|
}
|
|
4250
4250
|
goto __pyx_L5_except_error;
|
|
4251
4251
|
|
|
4252
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4252
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1023
|
|
4253
4253
|
* # Cython code.
|
|
4254
4254
|
* cdef inline int import_array() except -1:
|
|
4255
4255
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4265,7 +4265,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4265
4265
|
__pyx_L8_try_end:;
|
|
4266
4266
|
}
|
|
4267
4267
|
|
|
4268
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4268
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1022
|
|
4269
4269
|
* # Versions of the import_* functions which are more suitable for
|
|
4270
4270
|
* # Cython code.
|
|
4271
4271
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4290,7 +4290,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
4290
4290
|
return __pyx_r;
|
|
4291
4291
|
}
|
|
4292
4292
|
|
|
4293
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4293
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1028
|
|
4294
4294
|
* raise ImportError("numpy._core.multiarray failed to import")
|
|
4295
4295
|
*
|
|
4296
4296
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4317,7 +4317,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4317
4317
|
int __pyx_clineno = 0;
|
|
4318
4318
|
__Pyx_RefNannySetupContext("import_umath", 0);
|
|
4319
4319
|
|
|
4320
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4320
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1029
|
|
4321
4321
|
*
|
|
4322
4322
|
* cdef inline int import_umath() except -1:
|
|
4323
4323
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4333,7 +4333,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4333
4333
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
4334
4334
|
/*try:*/ {
|
|
4335
4335
|
|
|
4336
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4336
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1030
|
|
4337
4337
|
* cdef inline int import_umath() except -1:
|
|
4338
4338
|
* try:
|
|
4339
4339
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -4342,7 +4342,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4342
4342
|
*/
|
|
4343
4343
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1030, __pyx_L3_error)
|
|
4344
4344
|
|
|
4345
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4345
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1029
|
|
4346
4346
|
*
|
|
4347
4347
|
* cdef inline int import_umath() except -1:
|
|
4348
4348
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4356,7 +4356,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4356
4356
|
goto __pyx_L8_try_end;
|
|
4357
4357
|
__pyx_L3_error:;
|
|
4358
4358
|
|
|
4359
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4359
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1031
|
|
4360
4360
|
* try:
|
|
4361
4361
|
* _import_umath()
|
|
4362
4362
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4371,7 +4371,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4371
4371
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4372
4372
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
4373
4373
|
|
|
4374
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4374
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1032
|
|
4375
4375
|
* _import_umath()
|
|
4376
4376
|
* except Exception:
|
|
4377
4377
|
* raise ImportError("numpy._core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4396,7 +4396,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4396
4396
|
}
|
|
4397
4397
|
goto __pyx_L5_except_error;
|
|
4398
4398
|
|
|
4399
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4399
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1029
|
|
4400
4400
|
*
|
|
4401
4401
|
* cdef inline int import_umath() except -1:
|
|
4402
4402
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4412,7 +4412,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4412
4412
|
__pyx_L8_try_end:;
|
|
4413
4413
|
}
|
|
4414
4414
|
|
|
4415
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4415
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1028
|
|
4416
4416
|
* raise ImportError("numpy._core.multiarray failed to import")
|
|
4417
4417
|
*
|
|
4418
4418
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4437,7 +4437,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
4437
4437
|
return __pyx_r;
|
|
4438
4438
|
}
|
|
4439
4439
|
|
|
4440
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4440
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1034
|
|
4441
4441
|
* raise ImportError("numpy._core.umath failed to import")
|
|
4442
4442
|
*
|
|
4443
4443
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4464,7 +4464,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4464
4464
|
int __pyx_clineno = 0;
|
|
4465
4465
|
__Pyx_RefNannySetupContext("import_ufunc", 0);
|
|
4466
4466
|
|
|
4467
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4467
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1035
|
|
4468
4468
|
*
|
|
4469
4469
|
* cdef inline int import_ufunc() except -1:
|
|
4470
4470
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4480,7 +4480,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4480
4480
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
4481
4481
|
/*try:*/ {
|
|
4482
4482
|
|
|
4483
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4483
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1036
|
|
4484
4484
|
* cdef inline int import_ufunc() except -1:
|
|
4485
4485
|
* try:
|
|
4486
4486
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -4489,7 +4489,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4489
4489
|
*/
|
|
4490
4490
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(1, 1036, __pyx_L3_error)
|
|
4491
4491
|
|
|
4492
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4492
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1035
|
|
4493
4493
|
*
|
|
4494
4494
|
* cdef inline int import_ufunc() except -1:
|
|
4495
4495
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4503,7 +4503,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4503
4503
|
goto __pyx_L8_try_end;
|
|
4504
4504
|
__pyx_L3_error:;
|
|
4505
4505
|
|
|
4506
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4506
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1037
|
|
4507
4507
|
* try:
|
|
4508
4508
|
* _import_umath()
|
|
4509
4509
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -4518,7 +4518,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4518
4518
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
4519
4519
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
4520
4520
|
|
|
4521
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4521
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1038
|
|
4522
4522
|
* _import_umath()
|
|
4523
4523
|
* except Exception:
|
|
4524
4524
|
* raise ImportError("numpy._core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -4543,7 +4543,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4543
4543
|
}
|
|
4544
4544
|
goto __pyx_L5_except_error;
|
|
4545
4545
|
|
|
4546
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4546
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1035
|
|
4547
4547
|
*
|
|
4548
4548
|
* cdef inline int import_ufunc() except -1:
|
|
4549
4549
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -4559,7 +4559,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4559
4559
|
__pyx_L8_try_end:;
|
|
4560
4560
|
}
|
|
4561
4561
|
|
|
4562
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4562
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1034
|
|
4563
4563
|
* raise ImportError("numpy._core.umath failed to import")
|
|
4564
4564
|
*
|
|
4565
4565
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -4584,7 +4584,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4584
4584
|
return __pyx_r;
|
|
4585
4585
|
}
|
|
4586
4586
|
|
|
4587
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4587
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1041
|
|
4588
4588
|
*
|
|
4589
4589
|
*
|
|
4590
4590
|
* cdef inline bint is_timedelta64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4595,7 +4595,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
4595
4595
|
static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_obj) {
|
|
4596
4596
|
int __pyx_r;
|
|
4597
4597
|
|
|
4598
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4598
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1053
|
|
4599
4599
|
* bool
|
|
4600
4600
|
* """
|
|
4601
4601
|
* return PyObject_TypeCheck(obj, &PyTimedeltaArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -4605,7 +4605,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4605
4605
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyTimedeltaArrType_Type));
|
|
4606
4606
|
goto __pyx_L0;
|
|
4607
4607
|
|
|
4608
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4608
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1041
|
|
4609
4609
|
*
|
|
4610
4610
|
*
|
|
4611
4611
|
* cdef inline bint is_timedelta64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4618,7 +4618,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4618
4618
|
return __pyx_r;
|
|
4619
4619
|
}
|
|
4620
4620
|
|
|
4621
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4621
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1056
|
|
4622
4622
|
*
|
|
4623
4623
|
*
|
|
4624
4624
|
* cdef inline bint is_datetime64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4629,7 +4629,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
4629
4629
|
static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_obj) {
|
|
4630
4630
|
int __pyx_r;
|
|
4631
4631
|
|
|
4632
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4632
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1068
|
|
4633
4633
|
* bool
|
|
4634
4634
|
* """
|
|
4635
4635
|
* return PyObject_TypeCheck(obj, &PyDatetimeArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -4639,7 +4639,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4639
4639
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyDatetimeArrType_Type));
|
|
4640
4640
|
goto __pyx_L0;
|
|
4641
4641
|
|
|
4642
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4642
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1056
|
|
4643
4643
|
*
|
|
4644
4644
|
*
|
|
4645
4645
|
* cdef inline bint is_datetime64_object(object obj) noexcept: # <<<<<<<<<<<<<<
|
|
@@ -4652,7 +4652,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4652
4652
|
return __pyx_r;
|
|
4653
4653
|
}
|
|
4654
4654
|
|
|
4655
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4655
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1071
|
|
4656
4656
|
*
|
|
4657
4657
|
*
|
|
4658
4658
|
* cdef inline npy_datetime get_datetime64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4663,7 +4663,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
4663
4663
|
static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *__pyx_v_obj) {
|
|
4664
4664
|
npy_datetime __pyx_r;
|
|
4665
4665
|
|
|
4666
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4666
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1078
|
|
4667
4667
|
* also needed. That can be found using `get_datetime64_unit`.
|
|
4668
4668
|
* """
|
|
4669
4669
|
* return (<PyDatetimeScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -4673,7 +4673,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4673
4673
|
__pyx_r = ((PyDatetimeScalarObject *)__pyx_v_obj)->obval;
|
|
4674
4674
|
goto __pyx_L0;
|
|
4675
4675
|
|
|
4676
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4676
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1071
|
|
4677
4677
|
*
|
|
4678
4678
|
*
|
|
4679
4679
|
* cdef inline npy_datetime get_datetime64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4686,7 +4686,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4686
4686
|
return __pyx_r;
|
|
4687
4687
|
}
|
|
4688
4688
|
|
|
4689
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4689
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1081
|
|
4690
4690
|
*
|
|
4691
4691
|
*
|
|
4692
4692
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4697,7 +4697,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
4697
4697
|
static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject *__pyx_v_obj) {
|
|
4698
4698
|
npy_timedelta __pyx_r;
|
|
4699
4699
|
|
|
4700
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4700
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1085
|
|
4701
4701
|
* returns the int64 value underlying scalar numpy timedelta64 object
|
|
4702
4702
|
* """
|
|
4703
4703
|
* return (<PyTimedeltaScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -4707,7 +4707,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4707
4707
|
__pyx_r = ((PyTimedeltaScalarObject *)__pyx_v_obj)->obval;
|
|
4708
4708
|
goto __pyx_L0;
|
|
4709
4709
|
|
|
4710
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4710
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1081
|
|
4711
4711
|
*
|
|
4712
4712
|
*
|
|
4713
4713
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4720,7 +4720,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4720
4720
|
return __pyx_r;
|
|
4721
4721
|
}
|
|
4722
4722
|
|
|
4723
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4723
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1088
|
|
4724
4724
|
*
|
|
4725
4725
|
*
|
|
4726
4726
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4731,7 +4731,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
4731
4731
|
static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObject *__pyx_v_obj) {
|
|
4732
4732
|
NPY_DATETIMEUNIT __pyx_r;
|
|
4733
4733
|
|
|
4734
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4734
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1092
|
|
4735
4735
|
* returns the unit part of the dtype for a numpy datetime64 object.
|
|
4736
4736
|
* """
|
|
4737
4737
|
* return <NPY_DATETIMEUNIT>(<PyDatetimeScalarObject*>obj).obmeta.base # <<<<<<<<<<<<<<
|
|
@@ -4741,7 +4741,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
|
|
|
4741
4741
|
__pyx_r = ((NPY_DATETIMEUNIT)((PyDatetimeScalarObject *)__pyx_v_obj)->obmeta.base);
|
|
4742
4742
|
goto __pyx_L0;
|
|
4743
4743
|
|
|
4744
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-
|
|
4744
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/pip-build-env-4xiaq35t/overlay/Lib/site-packages/numpy/__init__.cython-30.pxd":1088
|
|
4745
4745
|
*
|
|
4746
4746
|
*
|
|
4747
4747
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) noexcept nogil: # <<<<<<<<<<<<<<
|
|
@@ -4754,7 +4754,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
|
|
|
4754
4754
|
return __pyx_r;
|
|
4755
4755
|
}
|
|
4756
4756
|
|
|
4757
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4757
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":9
|
|
4758
4758
|
* from libc.stdint cimport int32_t
|
|
4759
4759
|
*
|
|
4760
4760
|
* def seqlength(seqdata): # <<<<<<<<<<<<<<
|
|
@@ -4801,32 +4801,32 @@ PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
|
4801
4801
|
{
|
|
4802
4802
|
PyObject ** const __pyx_pyargnames[] = {&__pyx_mstate_global->__pyx_n_u_seqdata,0};
|
|
4803
4803
|
const Py_ssize_t __pyx_kwds_len = (__pyx_kwds) ? __Pyx_NumKwargs_FASTCALL(__pyx_kwds) : 0;
|
|
4804
|
-
if (unlikely(__pyx_kwds_len) < 0) __PYX_ERR(0,
|
|
4804
|
+
if (unlikely(__pyx_kwds_len) < 0) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4805
4805
|
if (__pyx_kwds_len > 0) {
|
|
4806
4806
|
switch (__pyx_nargs) {
|
|
4807
4807
|
case 1:
|
|
4808
4808
|
values[0] = __Pyx_ArgRef_FASTCALL(__pyx_args, 0);
|
|
4809
|
-
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0,
|
|
4809
|
+
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4810
4810
|
CYTHON_FALLTHROUGH;
|
|
4811
4811
|
case 0: break;
|
|
4812
4812
|
default: goto __pyx_L5_argtuple_error;
|
|
4813
4813
|
}
|
|
4814
4814
|
const Py_ssize_t kwd_pos_args = __pyx_nargs;
|
|
4815
|
-
if (__Pyx_ParseKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values, kwd_pos_args, __pyx_kwds_len, "seqlength", 0) < 0) __PYX_ERR(0,
|
|
4815
|
+
if (__Pyx_ParseKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values, kwd_pos_args, __pyx_kwds_len, "seqlength", 0) < 0) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4816
4816
|
for (Py_ssize_t i = __pyx_nargs; i < 1; i++) {
|
|
4817
|
-
if (unlikely(!values[i])) { __Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, i); __PYX_ERR(0,
|
|
4817
|
+
if (unlikely(!values[i])) { __Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, i); __PYX_ERR(0, 9, __pyx_L3_error) }
|
|
4818
4818
|
}
|
|
4819
4819
|
} else if (unlikely(__pyx_nargs != 1)) {
|
|
4820
4820
|
goto __pyx_L5_argtuple_error;
|
|
4821
4821
|
} else {
|
|
4822
4822
|
values[0] = __Pyx_ArgRef_FASTCALL(__pyx_args, 0);
|
|
4823
|
-
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0,
|
|
4823
|
+
if (!CYTHON_ASSUME_SAFE_MACROS && unlikely(!values[0])) __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4824
4824
|
}
|
|
4825
4825
|
__pyx_v_seqdata = values[0];
|
|
4826
4826
|
}
|
|
4827
4827
|
goto __pyx_L6_skip;
|
|
4828
4828
|
__pyx_L5_argtuple_error:;
|
|
4829
|
-
__Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, __pyx_nargs); __PYX_ERR(0,
|
|
4829
|
+
__Pyx_RaiseArgtupleInvalid("seqlength", 1, 1, 1, __pyx_nargs); __PYX_ERR(0, 9, __pyx_L3_error)
|
|
4830
4830
|
__pyx_L6_skip:;
|
|
4831
4831
|
goto __pyx_L4_argument_unpacking_done;
|
|
4832
4832
|
__pyx_L3_error:;
|
|
@@ -4874,33 +4874,33 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4874
4874
|
__pyx_pybuffernd_seqarray_long.data = NULL;
|
|
4875
4875
|
__pyx_pybuffernd_seqarray_long.rcbuffer = &__pyx_pybuffer_seqarray_long;
|
|
4876
4876
|
|
|
4877
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4877
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":10
|
|
4878
4878
|
*
|
|
4879
4879
|
* def seqlength(seqdata):
|
|
4880
4880
|
* if isinstance(seqdata, SequenceData): # <<<<<<<<<<<<<<
|
|
4881
4881
|
* seqdata = seqdata.seqdata.replace(np.nan, -99)
|
|
4882
4882
|
*
|
|
4883
4883
|
*/
|
|
4884
|
-
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4884
|
+
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 10, __pyx_L1_error)
|
|
4885
4885
|
__Pyx_GOTREF(__pyx_t_1);
|
|
4886
|
-
__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_1); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0,
|
|
4886
|
+
__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_1); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0, 10, __pyx_L1_error)
|
|
4887
4887
|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
4888
4888
|
if (__pyx_t_2) {
|
|
4889
4889
|
|
|
4890
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4890
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":11
|
|
4891
4891
|
* def seqlength(seqdata):
|
|
4892
4892
|
* if isinstance(seqdata, SequenceData):
|
|
4893
4893
|
* seqdata = seqdata.seqdata.replace(np.nan, -99) # <<<<<<<<<<<<<<
|
|
4894
4894
|
*
|
|
4895
4895
|
* cdef cnp.ndarray[int32_t, ndim=2] seqarray_long
|
|
4896
4896
|
*/
|
|
4897
|
-
__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_seqdata, __pyx_mstate_global->__pyx_n_u_seqdata); if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
|
|
4897
|
+
__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_v_seqdata, __pyx_mstate_global->__pyx_n_u_seqdata); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4898
4898
|
__Pyx_GOTREF(__pyx_t_4);
|
|
4899
4899
|
__pyx_t_3 = __pyx_t_4;
|
|
4900
4900
|
__Pyx_INCREF(__pyx_t_3);
|
|
4901
|
-
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0,
|
|
4901
|
+
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4902
4902
|
__Pyx_GOTREF(__pyx_t_5);
|
|
4903
|
-
__pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_nan); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
|
|
4903
|
+
__pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_nan); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4904
4904
|
__Pyx_GOTREF(__pyx_t_6);
|
|
4905
4905
|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
4906
4906
|
__pyx_t_7 = 0;
|
|
@@ -4910,13 +4910,13 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4910
4910
|
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
4911
4911
|
__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
|
|
4912
4912
|
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
|
|
4913
|
-
if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4913
|
+
if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 11, __pyx_L1_error)
|
|
4914
4914
|
__Pyx_GOTREF(__pyx_t_1);
|
|
4915
4915
|
}
|
|
4916
4916
|
__Pyx_DECREF_SET(__pyx_v_seqdata, __pyx_t_1);
|
|
4917
4917
|
__pyx_t_1 = 0;
|
|
4918
4918
|
|
|
4919
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4919
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":10
|
|
4920
4920
|
*
|
|
4921
4921
|
* def seqlength(seqdata):
|
|
4922
4922
|
* if isinstance(seqdata, SequenceData): # <<<<<<<<<<<<<<
|
|
@@ -4925,23 +4925,23 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4925
4925
|
*/
|
|
4926
4926
|
}
|
|
4927
4927
|
|
|
4928
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4928
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":15
|
|
4929
4929
|
* cdef cnp.ndarray[int32_t, ndim=2] seqarray_long
|
|
4930
4930
|
*
|
|
4931
4931
|
* if isinstance(seqdata, pd.DataFrame): # <<<<<<<<<<<<<<
|
|
4932
4932
|
* seqarray_long = seqdata.to_numpy(dtype=np.int32)
|
|
4933
4933
|
* return np.sum(seqarray_long > 0, axis=1)
|
|
4934
4934
|
*/
|
|
4935
|
-
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_pd); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
|
|
4935
|
+
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_pd); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 15, __pyx_L1_error)
|
|
4936
4936
|
__Pyx_GOTREF(__pyx_t_1);
|
|
4937
|
-
__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_DataFrame); if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
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|
+
__pyx_t_4 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_mstate_global->__pyx_n_u_DataFrame); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 15, __pyx_L1_error)
|
|
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|
__Pyx_GOTREF(__pyx_t_4);
|
|
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|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
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|
-
__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_4); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0,
|
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4940
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__pyx_t_2 = PyObject_IsInstance(__pyx_v_seqdata, __pyx_t_4); if (unlikely(__pyx_t_2 == ((int)-1))) __PYX_ERR(0, 15, __pyx_L1_error)
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|
__Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
|
|
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4942
|
if (__pyx_t_2) {
|
|
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4943
|
|
|
4944
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4944
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":16
|
|
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4945
|
*
|
|
4946
4946
|
* if isinstance(seqdata, pd.DataFrame):
|
|
4947
4947
|
* seqarray_long = seqdata.to_numpy(dtype=np.int32) # <<<<<<<<<<<<<<
|
|
@@ -4950,25 +4950,25 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4950
4950
|
*/
|
|
4951
4951
|
__pyx_t_1 = __pyx_v_seqdata;
|
|
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4952
|
__Pyx_INCREF(__pyx_t_1);
|
|
4953
|
-
__Pyx_GetModuleGlobalName(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
|
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4953
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+
__Pyx_GetModuleGlobalName(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 16, __pyx_L1_error)
|
|
4954
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|
__Pyx_GOTREF(__pyx_t_6);
|
|
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|
-
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_int32); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
|
|
4955
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+
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_mstate_global->__pyx_n_u_int32); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 16, __pyx_L1_error)
|
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|
__Pyx_GOTREF(__pyx_t_3);
|
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|
__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
|
|
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4958
|
__pyx_t_7 = 0;
|
|
4959
4959
|
{
|
|
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4960
|
PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_1, NULL};
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-
__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
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4961
|
+
__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 16, __pyx_L1_error)
|
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4962
4962
|
__Pyx_GOTREF(__pyx_t_6);
|
|
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|
-
if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_dtype, __pyx_t_3, __pyx_t_6, __pyx_callargs+1, 0) < 0) __PYX_ERR(0,
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if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_dtype, __pyx_t_3, __pyx_t_6, __pyx_callargs+1, 0) < 0) __PYX_ERR(0, 16, __pyx_L1_error)
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4964
4964
|
__pyx_t_4 = __Pyx_Object_VectorcallMethod_CallFromBuilder(__pyx_mstate_global->__pyx_n_u_to_numpy, __pyx_callargs+__pyx_t_7, (1-__pyx_t_7) | (1*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_6);
|
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4965
|
__Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
|
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|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
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|
__Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
|
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-
if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
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+
if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 16, __pyx_L1_error)
|
|
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4969
|
__Pyx_GOTREF(__pyx_t_4);
|
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4970
|
}
|
|
4971
|
-
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0,
|
|
4971
|
+
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 16, __pyx_L1_error)
|
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4972
|
{
|
|
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4973
|
__Pyx_BufFmt_StackElem __pyx_stack[1];
|
|
4974
4974
|
__Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer);
|
|
@@ -4984,12 +4984,12 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4984
4984
|
__pyx_t_9 = __pyx_t_10 = __pyx_t_11 = 0;
|
|
4985
4985
|
}
|
|
4986
4986
|
__pyx_pybuffernd_seqarray_long.diminfo[0].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_seqarray_long.diminfo[0].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_seqarray_long.diminfo[1].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_seqarray_long.diminfo[1].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[1];
|
|
4987
|
-
if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0,
|
|
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|
+
if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0, 16, __pyx_L1_error)
|
|
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4988
|
}
|
|
4989
4989
|
__pyx_v_seqarray_long = ((PyArrayObject *)__pyx_t_4);
|
|
4990
4990
|
__pyx_t_4 = 0;
|
|
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4991
|
|
|
4992
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
4992
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":17
|
|
4993
4993
|
* if isinstance(seqdata, pd.DataFrame):
|
|
4994
4994
|
* seqarray_long = seqdata.to_numpy(dtype=np.int32)
|
|
4995
4995
|
* return np.sum(seqarray_long > 0, axis=1) # <<<<<<<<<<<<<<
|
|
@@ -4998,12 +4998,12 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
4998
4998
|
*/
|
|
4999
4999
|
__Pyx_XDECREF(__pyx_r);
|
|
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5000
|
__pyx_t_6 = NULL;
|
|
5001
|
-
__Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
|
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5001
|
+
__Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 17, __pyx_L1_error)
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5002
5002
|
__Pyx_GOTREF(__pyx_t_3);
|
|
5003
|
-
__pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0,
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|
5003
|
+
__pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 17, __pyx_L1_error)
|
|
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5004
|
__Pyx_GOTREF(__pyx_t_1);
|
|
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5005
|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
5006
|
-
__pyx_t_3 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
|
|
5006
|
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__pyx_t_3 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 17, __pyx_L1_error)
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|
5007
5007
|
__pyx_t_7 = 1;
|
|
5008
5008
|
#if CYTHON_UNPACK_METHODS
|
|
5009
5009
|
if (unlikely(PyMethod_Check(__pyx_t_1))) {
|
|
@@ -5018,22 +5018,22 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5018
5018
|
#endif
|
|
5019
5019
|
{
|
|
5020
5020
|
PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_6, __pyx_t_3};
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5021
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-
__pyx_t_5 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0,
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5021
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+
__pyx_t_5 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 17, __pyx_L1_error)
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5022
5022
|
__Pyx_GOTREF(__pyx_t_5);
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5023
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-
if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_5, __pyx_callargs+2, 0) < 0) __PYX_ERR(0,
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5023
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if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_5, __pyx_callargs+2, 0) < 0) __PYX_ERR(0, 17, __pyx_L1_error)
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5024
5024
|
__pyx_t_4 = __Pyx_Object_Vectorcall_CallFromBuilder(__pyx_t_1, __pyx_callargs+__pyx_t_7, (2-__pyx_t_7) | (__pyx_t_7*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_5);
|
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5025
5025
|
__Pyx_XDECREF(__pyx_t_6); __pyx_t_6 = 0;
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5026
5026
|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
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5027
|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
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5028
|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
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-
if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
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5029
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+
if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 17, __pyx_L1_error)
|
|
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5030
|
__Pyx_GOTREF(__pyx_t_4);
|
|
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5031
|
}
|
|
5032
5032
|
__pyx_r = __pyx_t_4;
|
|
5033
5033
|
__pyx_t_4 = 0;
|
|
5034
5034
|
goto __pyx_L0;
|
|
5035
5035
|
|
|
5036
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5036
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":15
|
|
5037
5037
|
* cdef cnp.ndarray[int32_t, ndim=2] seqarray_long
|
|
5038
5038
|
*
|
|
5039
5039
|
* if isinstance(seqdata, pd.DataFrame): # <<<<<<<<<<<<<<
|
|
@@ -5042,7 +5042,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5042
5042
|
*/
|
|
5043
5043
|
}
|
|
5044
5044
|
|
|
5045
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5045
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":20
|
|
5046
5046
|
*
|
|
5047
5047
|
* else:
|
|
5048
5048
|
* seqarray_long = seqdata # <<<<<<<<<<<<<<
|
|
@@ -5051,7 +5051,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5051
5051
|
/*else*/ {
|
|
5052
5052
|
__pyx_t_4 = __pyx_v_seqdata;
|
|
5053
5053
|
__Pyx_INCREF(__pyx_t_4);
|
|
5054
|
-
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0,
|
|
5054
|
+
if (!(likely(((__pyx_t_4) == Py_None) || likely(__Pyx_TypeTest(__pyx_t_4, __pyx_mstate_global->__pyx_ptype_5numpy_ndarray))))) __PYX_ERR(0, 20, __pyx_L1_error)
|
|
5055
5055
|
{
|
|
5056
5056
|
__Pyx_BufFmt_StackElem __pyx_stack[1];
|
|
5057
5057
|
__Pyx_SafeReleaseBuffer(&__pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer);
|
|
@@ -5067,24 +5067,24 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5067
5067
|
__pyx_t_11 = __pyx_t_10 = __pyx_t_9 = 0;
|
|
5068
5068
|
}
|
|
5069
5069
|
__pyx_pybuffernd_seqarray_long.diminfo[0].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[0]; __pyx_pybuffernd_seqarray_long.diminfo[0].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[0]; __pyx_pybuffernd_seqarray_long.diminfo[1].strides = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.strides[1]; __pyx_pybuffernd_seqarray_long.diminfo[1].shape = __pyx_pybuffernd_seqarray_long.rcbuffer->pybuffer.shape[1];
|
|
5070
|
-
if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0,
|
|
5070
|
+
if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0, 20, __pyx_L1_error)
|
|
5071
5071
|
}
|
|
5072
5072
|
__pyx_v_seqarray_long = ((PyArrayObject *)__pyx_t_4);
|
|
5073
5073
|
__pyx_t_4 = 0;
|
|
5074
5074
|
|
|
5075
|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
5075
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":21
|
|
5076
5076
|
* else:
|
|
5077
5077
|
* seqarray_long = seqdata
|
|
5078
5078
|
* return np.sum(seqarray_long > 0, axis=1) # <<<<<<<<<<<<<<
|
|
5079
5079
|
*/
|
|
5080
5080
|
__Pyx_XDECREF(__pyx_r);
|
|
5081
5081
|
__pyx_t_1 = NULL;
|
|
5082
|
-
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0,
|
|
5082
|
+
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_np); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5083
5083
|
__Pyx_GOTREF(__pyx_t_5);
|
|
5084
|
-
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
|
|
5084
|
+
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_mstate_global->__pyx_n_u_sum); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5085
5085
|
__Pyx_GOTREF(__pyx_t_3);
|
|
5086
5086
|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
5087
|
-
__pyx_t_5 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(0,
|
|
5087
|
+
__pyx_t_5 = PyObject_RichCompare(((PyObject *)__pyx_v_seqarray_long), __pyx_mstate_global->__pyx_int_0, Py_GT); __Pyx_XGOTREF(__pyx_t_5); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5088
5088
|
__pyx_t_7 = 1;
|
|
5089
5089
|
#if CYTHON_UNPACK_METHODS
|
|
5090
5090
|
if (unlikely(PyMethod_Check(__pyx_t_3))) {
|
|
@@ -5099,15 +5099,15 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
|
|
5099
5099
|
#endif
|
|
5100
5100
|
{
|
|
5101
5101
|
PyObject *__pyx_callargs[2 + ((CYTHON_VECTORCALL) ? 1 : 0)] = {__pyx_t_1, __pyx_t_5};
|
|
5102
|
-
__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0,
|
|
5102
|
+
__pyx_t_6 = __Pyx_MakeVectorcallBuilderKwds(1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5103
5103
|
__Pyx_GOTREF(__pyx_t_6);
|
|
5104
|
-
if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_6, __pyx_callargs+2, 0) < 0) __PYX_ERR(0,
|
|
5104
|
+
if (__Pyx_VectorcallBuilder_AddArg(__pyx_mstate_global->__pyx_n_u_axis, __pyx_mstate_global->__pyx_int_1, __pyx_t_6, __pyx_callargs+2, 0) < 0) __PYX_ERR(0, 21, __pyx_L1_error)
|
|
5105
5105
|
__pyx_t_4 = __Pyx_Object_Vectorcall_CallFromBuilder(__pyx_t_3, __pyx_callargs+__pyx_t_7, (2-__pyx_t_7) | (__pyx_t_7*__Pyx_PY_VECTORCALL_ARGUMENTS_OFFSET), __pyx_t_6);
|
|
5106
5106
|
__Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
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if (unlikely(!__pyx_t_4)) __PYX_ERR(0,
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if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 21, __pyx_L1_error)
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__Pyx_GOTREF(__pyx_t_4);
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}
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__pyx_r = __pyx_t_4;
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@@ -5115,7 +5115,7 @@ static PyObject *__pyx_pf_8sequenzo_22dissimilarity_measures_5utils_9seqlength_s
|
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goto __pyx_L0;
|
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}
|
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|
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-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
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|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":9
|
|
5119
5119
|
* from libc.stdint cimport int32_t
|
|
5120
5120
|
*
|
|
5121
5121
|
* def seqlength(seqdata): # <<<<<<<<<<<<<<
|
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@@ -5672,61 +5672,63 @@ __Pyx_RefNannySetupContext("PyInit_seqlength", 0);
|
|
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(void)__Pyx_modinit_function_import_code(__pyx_mstate);
|
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|
/*--- Execution code ---*/
|
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|
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-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
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+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":2
|
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5676
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+
* # cython: np_import_array=True
|
|
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5677
|
* import pandas as pd # <<<<<<<<<<<<<<
|
|
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|
* import numpy as np
|
|
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|
* cimport numpy as cnp
|
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|
*/
|
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-
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_pandas, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
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+
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_pandas, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 2, __pyx_L1_error)
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__Pyx_GOTREF(__pyx_t_2);
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-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_pd, __pyx_t_2) < 0) __PYX_ERR(0,
|
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+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_pd, __pyx_t_2) < 0) __PYX_ERR(0, 2, __pyx_L1_error)
|
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__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
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|
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-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
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+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":3
|
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+
* # cython: np_import_array=True
|
|
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* import pandas as pd
|
|
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5689
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* import numpy as np # <<<<<<<<<<<<<<
|
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|
* cimport numpy as cnp
|
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-
*
|
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+
*
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|
*/
|
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-
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_numpy, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
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|
+
__pyx_t_2 = __Pyx_ImportDottedModule(__pyx_mstate_global->__pyx_n_u_numpy, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 3, __pyx_L1_error)
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__Pyx_GOTREF(__pyx_t_2);
|
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-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_np, __pyx_t_2) < 0) __PYX_ERR(0,
|
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+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_np, __pyx_t_2) < 0) __PYX_ERR(0, 3, __pyx_L1_error)
|
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__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
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|
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|
-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
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|
-
* import numpy as np
|
|
5698
|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":6
|
|
5698
5699
|
* cimport numpy as cnp
|
|
5700
|
+
*
|
|
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5701
|
* from sequenzo.define_sequence_data import SequenceData # <<<<<<<<<<<<<<
|
|
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|
* from libc.stdint cimport int32_t
|
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|
*
|
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*/
|
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-
__pyx_t_2 = __Pyx_PyList_Pack(1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
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+
__pyx_t_2 = __Pyx_PyList_Pack(1, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 6, __pyx_L1_error)
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__Pyx_GOTREF(__pyx_t_2);
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-
__pyx_t_3 = __Pyx_Import(__pyx_mstate_global->__pyx_n_u_sequenzo_define_sequence_data, __pyx_t_2, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
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|
+
__pyx_t_3 = __Pyx_Import(__pyx_mstate_global->__pyx_n_u_sequenzo_define_sequence_data, __pyx_t_2, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 6, __pyx_L1_error)
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__Pyx_GOTREF(__pyx_t_3);
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__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
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-
__pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0,
|
|
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+
__pyx_t_2 = __Pyx_ImportFrom(__pyx_t_3, __pyx_mstate_global->__pyx_n_u_SequenceData); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 6, __pyx_L1_error)
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__Pyx_GOTREF(__pyx_t_2);
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-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_SequenceData, __pyx_t_2) < 0) __PYX_ERR(0,
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+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_SequenceData, __pyx_t_2) < 0) __PYX_ERR(0, 6, __pyx_L1_error)
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__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
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__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
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-
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":
|
|
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|
+
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":9
|
|
5715
5717
|
* from libc.stdint cimport int32_t
|
|
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|
*
|
|
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5719
|
* def seqlength(seqdata): # <<<<<<<<<<<<<<
|
|
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|
* if isinstance(seqdata, SequenceData):
|
|
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|
* seqdata = seqdata.seqdata.replace(np.nan, -99)
|
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|
*/
|
|
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-
__pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_8sequenzo_22dissimilarity_measures_5utils_9seqlength_1seqlength, 0, __pyx_mstate_global->__pyx_n_u_seqlength, NULL, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures, __pyx_mstate_global->__pyx_d, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[0])); if (unlikely(!__pyx_t_3)) __PYX_ERR(0,
|
|
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+
__pyx_t_3 = __Pyx_CyFunction_New(&__pyx_mdef_8sequenzo_22dissimilarity_measures_5utils_9seqlength_1seqlength, 0, __pyx_mstate_global->__pyx_n_u_seqlength, NULL, __pyx_mstate_global->__pyx_n_u_sequenzo_dissimilarity_measures, __pyx_mstate_global->__pyx_d, ((PyObject *)__pyx_mstate_global->__pyx_codeobj_tab[0])); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 9, __pyx_L1_error)
|
|
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__Pyx_GOTREF(__pyx_t_3);
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|
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-
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_seqlength, __pyx_t_3) < 0) __PYX_ERR(0,
|
|
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+
if (PyDict_SetItem(__pyx_mstate_global->__pyx_d, __pyx_mstate_global->__pyx_n_u_seqlength, __pyx_t_3) < 0) __PYX_ERR(0, 9, __pyx_L1_error)
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__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
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|
/* "sequenzo/dissimilarity_measures/utils/seqlength.pyx":1
|
|
5727
|
-
*
|
|
5729
|
+
* # cython: np_import_array=True # <<<<<<<<<<<<<<
|
|
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|
+
* import pandas as pd
|
|
5728
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|
* import numpy as np
|
|
5729
|
-
* cimport numpy as cnp
|
|
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5732
|
*/
|
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|
__pyx_t_3 = __Pyx_PyDict_NewPresized(0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 1, __pyx_L1_error)
|
|
5732
5734
|
__Pyx_GOTREF(__pyx_t_3);
|
|
@@ -5874,7 +5876,7 @@ static int __Pyx_InitConstants(__pyx_mstatetype *__pyx_mstate) {
|
|
|
5874
5876
|
unsigned int num_kwonly_args : 1;
|
|
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|
unsigned int nlocals : 2;
|
|
5876
5878
|
unsigned int flags : 10;
|
|
5877
|
-
unsigned int first_line :
|
|
5879
|
+
unsigned int first_line : 4;
|
|
5878
5880
|
unsigned int line_table_length : 12;
|
|
5879
5881
|
} __Pyx_PyCode_New_function_description;
|
|
5880
5882
|
/* NewCodeObj.proto */
|
|
@@ -5892,7 +5894,7 @@ static int __Pyx_CreateCodeObjects(__pyx_mstatetype *__pyx_mstate) {
|
|
|
5892
5894
|
PyObject* tuple_dedup_map = PyDict_New();
|
|
5893
5895
|
if (unlikely(!tuple_dedup_map)) return -1;
|
|
5894
5896
|
{
|
|
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|
-
const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS),
|
|
5897
|
+
const __Pyx_PyCode_New_function_description descr = {1, 0, 0, 2, (unsigned int)(CO_OPTIMIZED|CO_NEWLOCALS), 9, 105};
|
|
5896
5898
|
PyObject* const varnames[] = {__pyx_mstate->__pyx_n_u_seqdata, __pyx_mstate->__pyx_n_u_seqarray_long};
|
|
5897
5899
|
__pyx_mstate_global->__pyx_codeobj_tab[0] = __Pyx_PyCode_New(descr, varnames, __pyx_mstate->__pyx_kp_u_sequenzo_dissimilarity_measures_2, __pyx_mstate->__pyx_n_u_seqlength, __pyx_k_z_1_G1_z_2Q_y_r_r_QnBc_a_r_QnBc, tuple_dedup_map); if (unlikely(!__pyx_mstate_global->__pyx_codeobj_tab[0])) goto bad;
|
|
5898
5900
|
}
|