sequenzo 0.1.18__cp39-cp39-win_amd64.whl → 0.1.20__cp39-cp39-win_amd64.whl

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h

@@ -1,87 +0,0 @@
-/*
- Copyright (c) 2011, Intel Corporation. All rights reserved.
-
- Redistribution and use in source and binary forms, with or without modification,
- are permitted provided that the following conditions are met:
-
- * Redistributions of source code must retain the above copyright notice, this
-   list of conditions and the following disclaimer.
- * Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
- * Neither the name of Intel Corporation nor the names of its contributors may
-   be used to endorse or promote products derived from this software without
-   specific prior written permission.
-
- THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
- ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
- WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
- DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
- ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
- LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
- ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
- (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
- SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
- ********************************************************************************
- *   Content : Eigen bindings to LAPACKe
- *    Self-adjoint eigenvalues/eigenvectors.
- ********************************************************************************
-*/
-
-#ifndef EIGEN_SAEIGENSOLVER_LAPACKE_H
-#define EIGEN_SAEIGENSOLVER_LAPACKE_H
-
-namespace Eigen { 
-
-/** \internal Specialization for the data types supported by LAPACKe */
-
-#define EIGEN_LAPACKE_EIG_SELFADJ_2(EIGTYPE, LAPACKE_TYPE, LAPACKE_RTYPE, LAPACKE_NAME, EIGCOLROW ) \
-template<> template<typename InputType> inline \
-SelfAdjointEigenSolver<Matrix<EIGTYPE, Dynamic, Dynamic, EIGCOLROW> >& \
-SelfAdjointEigenSolver<Matrix<EIGTYPE, Dynamic, Dynamic, EIGCOLROW> >::compute(const EigenBase<InputType>& matrix, int options) \
-{ \
-  eigen_assert(matrix.cols() == matrix.rows()); \
-  eigen_assert((options&~(EigVecMask|GenEigMask))==0 \
-          && (options&EigVecMask)!=EigVecMask \
-          && "invalid option parameter"); \
-  bool computeEigenvectors = (options&ComputeEigenvectors)==ComputeEigenvectors; \
-  lapack_int n = internal::convert_index<lapack_int>(matrix.cols()), lda, info; \
-  m_eivalues.resize(n,1); \
-  m_subdiag.resize(n-1); \
-  m_eivec = matrix; \
-\
-  if(n==1) \
-  { \
-    m_eivalues.coeffRef(0,0) = numext::real(m_eivec.coeff(0,0)); \
-    if(computeEigenvectors) m_eivec.setOnes(n,n); \
-    m_info = Success; \
-    m_isInitialized = true; \
-    m_eigenvectorsOk = computeEigenvectors; \
-    return *this; \
-  } \
-\
-  lda = internal::convert_index<lapack_int>(m_eivec.outerStride()); \
-  char jobz, uplo='L'/*, range='A'*/; \
-  jobz = computeEigenvectors ? 'V' : 'N'; \
-\
-  info = LAPACKE_##LAPACKE_NAME( LAPACK_COL_MAJOR, jobz, uplo, n, (LAPACKE_TYPE*)m_eivec.data(), lda, (LAPACKE_RTYPE*)m_eivalues.data() ); \
-  m_info = (info==0) ? Success : NoConvergence; \
-  m_isInitialized = true; \
-  m_eigenvectorsOk = computeEigenvectors; \
-  return *this; \
-}
-
-#define EIGEN_LAPACKE_EIG_SELFADJ(EIGTYPE, LAPACKE_TYPE, LAPACKE_RTYPE, LAPACKE_NAME )              \
-        EIGEN_LAPACKE_EIG_SELFADJ_2(EIGTYPE, LAPACKE_TYPE, LAPACKE_RTYPE, LAPACKE_NAME, ColMajor )  \
-        EIGEN_LAPACKE_EIG_SELFADJ_2(EIGTYPE, LAPACKE_TYPE, LAPACKE_RTYPE, LAPACKE_NAME, RowMajor ) 
-
-EIGEN_LAPACKE_EIG_SELFADJ(double,   double,                double, dsyev)
-EIGEN_LAPACKE_EIG_SELFADJ(float,    float,                 float,  ssyev)
-EIGEN_LAPACKE_EIG_SELFADJ(dcomplex, lapack_complex_double, double, zheev)
-EIGEN_LAPACKE_EIG_SELFADJ(scomplex, lapack_complex_float,  float,  cheev)
-
-} // end namespace Eigen
-
-#endif // EIGEN_SAEIGENSOLVER_H

sequenzo/dissimilarity_measures/src/eigen/Eigen/src/Eigenvalues/Tridiagonalization.h

@@ -1,561 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
-// Copyright (C) 2010 Jitse Niesen <jitse@maths.leeds.ac.uk>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-#ifndef EIGEN_TRIDIAGONALIZATION_H
-#define EIGEN_TRIDIAGONALIZATION_H
-
-namespace Eigen {
-
-namespace internal {
-
-template<typename MatrixType> struct TridiagonalizationMatrixTReturnType;
-template<typename MatrixType>
-struct traits<TridiagonalizationMatrixTReturnType<MatrixType> >
-  : public traits<typename MatrixType::PlainObject>
-{
-  typedef typename MatrixType::PlainObject ReturnType; // FIXME shall it be a BandMatrix?
-  enum { Flags = 0 };
-};
-
-template<typename MatrixType, typename CoeffVectorType>
-EIGEN_DEVICE_FUNC
-void tridiagonalization_inplace(MatrixType& matA, CoeffVectorType& hCoeffs);
-}
-
-/** \eigenvalues_module \ingroup Eigenvalues_Module
-  *
-  *
-  * \class Tridiagonalization
-  *
-  * \brief Tridiagonal decomposition of a selfadjoint matrix
-  *
-  * \tparam _MatrixType the type of the matrix of which we are computing the
-  * tridiagonal decomposition; this is expected to be an instantiation of the
-  * Matrix class template.
-  *
-  * This class performs a tridiagonal decomposition of a selfadjoint matrix \f$ A \f$ such that:
-  * \f$ A = Q T Q^* \f$ where \f$ Q \f$ is unitary and \f$ T \f$ a real symmetric tridiagonal matrix.
-  *
-  * A tridiagonal matrix is a matrix which has nonzero elements only on the
-  * main diagonal and the first diagonal below and above it. The Hessenberg
-  * decomposition of a selfadjoint matrix is in fact a tridiagonal
-  * decomposition. This class is used in SelfAdjointEigenSolver to compute the
-  * eigenvalues and eigenvectors of a selfadjoint matrix.
-  *
-  * Call the function compute() to compute the tridiagonal decomposition of a
-  * given matrix. Alternatively, you can use the Tridiagonalization(const MatrixType&)
-  * constructor which computes the tridiagonal Schur decomposition at
-  * construction time. Once the decomposition is computed, you can use the
-  * matrixQ() and matrixT() functions to retrieve the matrices Q and T in the
-  * decomposition.
-  *
-  * The documentation of Tridiagonalization(const MatrixType&) contains an
-  * example of the typical use of this class.
-  *
-  * \sa class HessenbergDecomposition, class SelfAdjointEigenSolver
-  */
-template<typename _MatrixType> class Tridiagonalization
-{
-  public:
-
-    /** \brief Synonym for the template parameter \p _MatrixType. */
-    typedef _MatrixType MatrixType;
-
-    typedef typename MatrixType::Scalar Scalar;
-    typedef typename NumTraits<Scalar>::Real RealScalar;
-    typedef Eigen::Index Index; ///< \deprecated since Eigen 3.3
-
-    enum {
-      Size = MatrixType::RowsAtCompileTime,
-      SizeMinusOne = Size == Dynamic ? Dynamic : (Size > 1 ? Size - 1 : 1),
-      Options = MatrixType::Options,
-      MaxSize = MatrixType::MaxRowsAtCompileTime,
-      MaxSizeMinusOne = MaxSize == Dynamic ? Dynamic : (MaxSize > 1 ? MaxSize - 1 : 1)
-    };
-
-    typedef Matrix<Scalar, SizeMinusOne, 1, Options & ~RowMajor, MaxSizeMinusOne, 1> CoeffVectorType;
-    typedef typename internal::plain_col_type<MatrixType, RealScalar>::type DiagonalType;
-    typedef Matrix<RealScalar, SizeMinusOne, 1, Options & ~RowMajor, MaxSizeMinusOne, 1> SubDiagonalType;
-    typedef typename internal::remove_all<typename MatrixType::RealReturnType>::type MatrixTypeRealView;
-    typedef internal::TridiagonalizationMatrixTReturnType<MatrixTypeRealView> MatrixTReturnType;
-
-    typedef typename internal::conditional<NumTraits<Scalar>::IsComplex,
-              typename internal::add_const_on_value_type<typename Diagonal<const MatrixType>::RealReturnType>::type,
-              const Diagonal<const MatrixType>
-            >::type DiagonalReturnType;
-
-    typedef typename internal::conditional<NumTraits<Scalar>::IsComplex,
-              typename internal::add_const_on_value_type<typename Diagonal<const MatrixType, -1>::RealReturnType>::type,
-              const Diagonal<const MatrixType, -1>
-            >::type SubDiagonalReturnType;
-
-    /** \brief Return type of matrixQ() */
-    typedef HouseholderSequence<MatrixType,typename internal::remove_all<typename CoeffVectorType::ConjugateReturnType>::type> HouseholderSequenceType;
-
-    /** \brief Default constructor.
-      *
-      * \param [in]  size  Positive integer, size of the matrix whose tridiagonal
-      * decomposition will be computed.
-      *
-      * The default constructor is useful in cases in which the user intends to
-      * perform decompositions via compute().  The \p size parameter is only
-      * used as a hint. It is not an error to give a wrong \p size, but it may
-      * impair performance.
-      *
-      * \sa compute() for an example.
-      */
-    explicit Tridiagonalization(Index size = Size==Dynamic ? 2 : Size)
-      : m_matrix(size,size),
-        m_hCoeffs(size > 1 ? size-1 : 1),
-        m_isInitialized(false)
-    {}
-
-    /** \brief Constructor; computes tridiagonal decomposition of given matrix.
-      *
-      * \param[in]  matrix  Selfadjoint matrix whose tridiagonal decomposition
-      * is to be computed.
-      *
-      * This constructor calls compute() to compute the tridiagonal decomposition.
-      *
-      * Example: \include Tridiagonalization_Tridiagonalization_MatrixType.cpp
-      * Output: \verbinclude Tridiagonalization_Tridiagonalization_MatrixType.out
-      */
-    template<typename InputType>
-    explicit Tridiagonalization(const EigenBase<InputType>& matrix)
-      : m_matrix(matrix.derived()),
-        m_hCoeffs(matrix.cols() > 1 ? matrix.cols()-1 : 1),
-        m_isInitialized(false)
-    {
-      internal::tridiagonalization_inplace(m_matrix, m_hCoeffs);
-      m_isInitialized = true;
-    }
-
-    /** \brief Computes tridiagonal decomposition of given matrix.
-      *
-      * \param[in]  matrix  Selfadjoint matrix whose tridiagonal decomposition
-      * is to be computed.
-      * \returns    Reference to \c *this
-      *
-      * The tridiagonal decomposition is computed by bringing the columns of
-      * the matrix successively in the required form using Householder
-      * reflections. The cost is \f$ 4n^3/3 \f$ flops, where \f$ n \f$ denotes
-      * the size of the given matrix.
-      *
-      * This method reuses of the allocated data in the Tridiagonalization
-      * object, if the size of the matrix does not change.
-      *
-      * Example: \include Tridiagonalization_compute.cpp
-      * Output: \verbinclude Tridiagonalization_compute.out
-      */
-    template<typename InputType>
-    Tridiagonalization& compute(const EigenBase<InputType>& matrix)
-    {
-      m_matrix = matrix.derived();
-      m_hCoeffs.resize(matrix.rows()-1, 1);
-      internal::tridiagonalization_inplace(m_matrix, m_hCoeffs);
-      m_isInitialized = true;
-      return *this;
-    }
-
-    /** \brief Returns the Householder coefficients.
-      *
-      * \returns a const reference to the vector of Householder coefficients
-      *
-      * \pre Either the constructor Tridiagonalization(const MatrixType&) or
-      * the member function compute(const MatrixType&) has been called before
-      * to compute the tridiagonal decomposition of a matrix.
-      *
-      * The Householder coefficients allow the reconstruction of the matrix
-      * \f$ Q \f$ in the tridiagonal decomposition from the packed data.
-      *
-      * Example: \include Tridiagonalization_householderCoefficients.cpp
-      * Output: \verbinclude Tridiagonalization_householderCoefficients.out
-      *
-      * \sa packedMatrix(), \ref Householder_Module "Householder module"
-      */
-    inline CoeffVectorType householderCoefficients() const
-    {
-      eigen_assert(m_isInitialized && "Tridiagonalization is not initialized.");
-      return m_hCoeffs;
-    }
-
-    /** \brief Returns the internal representation of the decomposition
-      *
-      *	\returns a const reference to a matrix with the internal representation
-      *	         of the decomposition.
-      *
-      * \pre Either the constructor Tridiagonalization(const MatrixType&) or
-      * the member function compute(const MatrixType&) has been called before
-      * to compute the tridiagonal decomposition of a matrix.
-      *
-      * The returned matrix contains the following information:
-      *  - the strict upper triangular part is equal to the input matrix A.
-      *  - the diagonal and lower sub-diagonal represent the real tridiagonal
-      *    symmetric matrix T.
-      *  - the rest of the lower part contains the Householder vectors that,
-      *    combined with Householder coefficients returned by
-      *    householderCoefficients(), allows to reconstruct the matrix Q as
-      *       \f$ Q = H_{N-1} \ldots H_1 H_0 \f$.
-      *    Here, the matrices \f$ H_i \f$ are the Householder transformations
-      *       \f$ H_i = (I - h_i v_i v_i^T) \f$
-      *    where \f$ h_i \f$ is the \f$ i \f$th Householder coefficient and
-      *    \f$ v_i \f$ is the Householder vector defined by
-      *       \f$ v_i = [ 0, \ldots, 0, 1, M(i+2,i), \ldots, M(N-1,i) ]^T \f$
-      *    with M the matrix returned by this function.
-      *
-      * See LAPACK for further details on this packed storage.
-      *
-      * Example: \include Tridiagonalization_packedMatrix.cpp
-      * Output: \verbinclude Tridiagonalization_packedMatrix.out
-      *
-      * \sa householderCoefficients()
-      */
-    inline const MatrixType& packedMatrix() const
-    {
-      eigen_assert(m_isInitialized && "Tridiagonalization is not initialized.");
-      return m_matrix;
-    }
-
-    /** \brief Returns the unitary matrix Q in the decomposition
-      *
-      * \returns object representing the matrix Q
-      *
-      * \pre Either the constructor Tridiagonalization(const MatrixType&) or
-      * the member function compute(const MatrixType&) has been called before
-      * to compute the tridiagonal decomposition of a matrix.
-      *
-      * This function returns a light-weight object of template class
-      * HouseholderSequence. You can either apply it directly to a matrix or
-      * you can convert it to a matrix of type #MatrixType.
-      *
-      * \sa Tridiagonalization(const MatrixType&) for an example,
-      *     matrixT(), class HouseholderSequence
-      */
-    HouseholderSequenceType matrixQ() const
-    {
-      eigen_assert(m_isInitialized && "Tridiagonalization is not initialized.");
-      return HouseholderSequenceType(m_matrix, m_hCoeffs.conjugate())
-             .setLength(m_matrix.rows() - 1)
-             .setShift(1);
-    }
-
-    /** \brief Returns an expression of the tridiagonal matrix T in the decomposition
-      *
-      * \returns expression object representing the matrix T
-      *
-      * \pre Either the constructor Tridiagonalization(const MatrixType&) or
-      * the member function compute(const MatrixType&) has been called before
-      * to compute the tridiagonal decomposition of a matrix.
-      *
-      * Currently, this function can be used to extract the matrix T from internal
-      * data and copy it to a dense matrix object. In most cases, it may be
-      * sufficient to directly use the packed matrix or the vector expressions
-      * returned by diagonal() and subDiagonal() instead of creating a new
-      * dense copy matrix with this function.
-      *
-      * \sa Tridiagonalization(const MatrixType&) for an example,
-      * matrixQ(), packedMatrix(), diagonal(), subDiagonal()
-      */
-    MatrixTReturnType matrixT() const
-    {
-      eigen_assert(m_isInitialized && "Tridiagonalization is not initialized.");
-      return MatrixTReturnType(m_matrix.real());
-    }
-
-    /** \brief Returns the diagonal of the tridiagonal matrix T in the decomposition.
-      *
-      * \returns expression representing the diagonal of T
-      *
-      * \pre Either the constructor Tridiagonalization(const MatrixType&) or
-      * the member function compute(const MatrixType&) has been called before
-      * to compute the tridiagonal decomposition of a matrix.
-      *
-      * Example: \include Tridiagonalization_diagonal.cpp
-      * Output: \verbinclude Tridiagonalization_diagonal.out
-      *
-      * \sa matrixT(), subDiagonal()
-      */
-    DiagonalReturnType diagonal() const;
-
-    /** \brief Returns the subdiagonal of the tridiagonal matrix T in the decomposition.
-      *
-      * \returns expression representing the subdiagonal of T
-      *
-      * \pre Either the constructor Tridiagonalization(const MatrixType&) or
-      * the member function compute(const MatrixType&) has been called before
-      * to compute the tridiagonal decomposition of a matrix.
-      *
-      * \sa diagonal() for an example, matrixT()
-      */
-    SubDiagonalReturnType subDiagonal() const;
-
-  protected:
-
-    MatrixType m_matrix;
-    CoeffVectorType m_hCoeffs;
-    bool m_isInitialized;
-};
-
-template<typename MatrixType>
-typename Tridiagonalization<MatrixType>::DiagonalReturnType
-Tridiagonalization<MatrixType>::diagonal() const
-{
-  eigen_assert(m_isInitialized && "Tridiagonalization is not initialized.");
-  return m_matrix.diagonal().real();
-}
-
-template<typename MatrixType>
-typename Tridiagonalization<MatrixType>::SubDiagonalReturnType
-Tridiagonalization<MatrixType>::subDiagonal() const
-{
-  eigen_assert(m_isInitialized && "Tridiagonalization is not initialized.");
-  return m_matrix.template diagonal<-1>().real();
-}
-
-namespace internal {
-
-/** \internal
-  * Performs a tridiagonal decomposition of the selfadjoint matrix \a matA in-place.
-  *
-  * \param[in,out] matA On input the selfadjoint matrix. Only the \b lower triangular part is referenced.
-  *                     On output, the strict upper part is left unchanged, and the lower triangular part
-  *                     represents the T and Q matrices in packed format has detailed below.
-  * \param[out]    hCoeffs returned Householder coefficients (see below)
-  *
-  * On output, the tridiagonal selfadjoint matrix T is stored in the diagonal
-  * and lower sub-diagonal of the matrix \a matA.
-  * The unitary matrix Q is represented in a compact way as a product of
-  * Householder reflectors \f$ H_i \f$ such that:
-  *       \f$ Q = H_{N-1} \ldots H_1 H_0 \f$.
-  * The Householder reflectors are defined as
-  *       \f$ H_i = (I - h_i v_i v_i^T) \f$
-  * where \f$ h_i = hCoeffs[i]\f$ is the \f$ i \f$th Householder coefficient and
-  * \f$ v_i \f$ is the Householder vector defined by
-  *       \f$ v_i = [ 0, \ldots, 0, 1, matA(i+2,i), \ldots, matA(N-1,i) ]^T \f$.
-  *
-  * Implemented from Golub's "Matrix Computations", algorithm 8.3.1.
-  *
-  * \sa Tridiagonalization::packedMatrix()
-  */
-template<typename MatrixType, typename CoeffVectorType>
-EIGEN_DEVICE_FUNC
-void tridiagonalization_inplace(MatrixType& matA, CoeffVectorType& hCoeffs)
-{
-  using numext::conj;
-  typedef typename MatrixType::Scalar Scalar;
-  typedef typename MatrixType::RealScalar RealScalar;
-  Index n = matA.rows();
-  eigen_assert(n==matA.cols());
-  eigen_assert(n==hCoeffs.size()+1 || n==1);
-
-  for (Index i = 0; i<n-1; ++i)
-  {
-    Index remainingSize = n-i-1;
-    RealScalar beta;
-    Scalar h;
-    matA.col(i).tail(remainingSize).makeHouseholderInPlace(h, beta);
-
-    // Apply similarity transformation to remaining columns,
-    // i.e., A = H A H' where H = I - h v v' and v = matA.col(i).tail(n-i-1)
-    matA.col(i).coeffRef(i+1) = 1;
-
-    hCoeffs.tail(n-i-1).noalias() = (matA.bottomRightCorner(remainingSize,remainingSize).template selfadjointView<Lower>()
-                                  * (conj(h) * matA.col(i).tail(remainingSize)));
-
-    hCoeffs.tail(n-i-1) += (conj(h)*RealScalar(-0.5)*(hCoeffs.tail(remainingSize).dot(matA.col(i).tail(remainingSize)))) * matA.col(i).tail(n-i-1);
-
-    matA.bottomRightCorner(remainingSize, remainingSize).template selfadjointView<Lower>()
-      .rankUpdate(matA.col(i).tail(remainingSize), hCoeffs.tail(remainingSize), Scalar(-1));
-
-    matA.col(i).coeffRef(i+1) = beta;
-    hCoeffs.coeffRef(i) = h;
-  }
-}
-
-// forward declaration, implementation at the end of this file
-template<typename MatrixType,
-         int Size=MatrixType::ColsAtCompileTime,
-         bool IsComplex=NumTraits<typename MatrixType::Scalar>::IsComplex>
-struct tridiagonalization_inplace_selector;
-
-/** \brief Performs a full tridiagonalization in place
-  *
-  * \param[in,out]  mat  On input, the selfadjoint matrix whose tridiagonal
-  *    decomposition is to be computed. Only the lower triangular part referenced.
-  *    The rest is left unchanged. On output, the orthogonal matrix Q
-  *    in the decomposition if \p extractQ is true.
-  * \param[out]  diag  The diagonal of the tridiagonal matrix T in the
-  *    decomposition.
-  * \param[out]  subdiag  The subdiagonal of the tridiagonal matrix T in
-  *    the decomposition.
-  * \param[in]  extractQ  If true, the orthogonal matrix Q in the
-  *    decomposition is computed and stored in \p mat.
-  *
-  * Computes the tridiagonal decomposition of the selfadjoint matrix \p mat in place
-  * such that \f$ mat = Q T Q^* \f$ where \f$ Q \f$ is unitary and \f$ T \f$ a real
-  * symmetric tridiagonal matrix.
-  *
-  * The tridiagonal matrix T is passed to the output parameters \p diag and \p subdiag. If
-  * \p extractQ is true, then the orthogonal matrix Q is passed to \p mat. Otherwise the lower
-  * part of the matrix \p mat is destroyed.
-  *
-  * The vectors \p diag and \p subdiag are not resized. The function
-  * assumes that they are already of the correct size. The length of the
-  * vector \p diag should equal the number of rows in \p mat, and the
-  * length of the vector \p subdiag should be one left.
-  *
-  * This implementation contains an optimized path for 3-by-3 matrices
-  * which is especially useful for plane fitting.
-  *
-  * \note Currently, it requires two temporary vectors to hold the intermediate
-  * Householder coefficients, and to reconstruct the matrix Q from the Householder
-  * reflectors.
-  *
-  * Example (this uses the same matrix as the example in
-  *    Tridiagonalization::Tridiagonalization(const MatrixType&)):
-  *    \include Tridiagonalization_decomposeInPlace.cpp
-  * Output: \verbinclude Tridiagonalization_decomposeInPlace.out
-  *
-  * \sa class Tridiagonalization
-  */
-template<typename MatrixType, typename DiagonalType, typename SubDiagonalType, typename CoeffVectorType>
-EIGEN_DEVICE_FUNC
-void tridiagonalization_inplace(MatrixType& mat, DiagonalType& diag, SubDiagonalType& subdiag,
-                                CoeffVectorType& hcoeffs, bool extractQ)
-{
-  eigen_assert(mat.cols()==mat.rows() && diag.size()==mat.rows() && subdiag.size()==mat.rows()-1);
-  tridiagonalization_inplace_selector<MatrixType>::run(mat, diag, subdiag, hcoeffs, extractQ);
-}
-
-/** \internal
-  * General full tridiagonalization
-  */
-template<typename MatrixType, int Size, bool IsComplex>
-struct tridiagonalization_inplace_selector
-{
-  typedef typename Tridiagonalization<MatrixType>::CoeffVectorType CoeffVectorType;
-  typedef typename Tridiagonalization<MatrixType>::HouseholderSequenceType HouseholderSequenceType;
-  template<typename DiagonalType, typename SubDiagonalType>
-  static EIGEN_DEVICE_FUNC
-      void run(MatrixType& mat, DiagonalType& diag, SubDiagonalType& subdiag, CoeffVectorType& hCoeffs, bool extractQ)
-  {
-    tridiagonalization_inplace(mat, hCoeffs);
-    diag = mat.diagonal().real();
-    subdiag = mat.template diagonal<-1>().real();
-    if(extractQ)
-      mat = HouseholderSequenceType(mat, hCoeffs.conjugate())
-            .setLength(mat.rows() - 1)
-            .setShift(1);
-  }
-};
-
-/** \internal
-  * Specialization for 3x3 real matrices.
-  * Especially useful for plane fitting.
-  */
-template<typename MatrixType>
-struct tridiagonalization_inplace_selector<MatrixType,3,false>
-{
-  typedef typename MatrixType::Scalar Scalar;
-  typedef typename MatrixType::RealScalar RealScalar;
-
-  template<typename DiagonalType, typename SubDiagonalType, typename CoeffVectorType>
-  static void run(MatrixType& mat, DiagonalType& diag, SubDiagonalType& subdiag, CoeffVectorType&, bool extractQ)
-  {
-    using std::sqrt;
-    const RealScalar tol = (std::numeric_limits<RealScalar>::min)();
-    diag[0] = mat(0,0);
-    RealScalar v1norm2 = numext::abs2(mat(2,0));
-    if(v1norm2 <= tol)
-    {
-      diag[1] = mat(1,1);
-      diag[2] = mat(2,2);
-      subdiag[0] = mat(1,0);
-      subdiag[1] = mat(2,1);
-      if (extractQ)
-        mat.setIdentity();
-    }
-    else
-    {
-      RealScalar beta = sqrt(numext::abs2(mat(1,0)) + v1norm2);
-      RealScalar invBeta = RealScalar(1)/beta;
-      Scalar m01 = mat(1,0) * invBeta;
-      Scalar m02 = mat(2,0) * invBeta;
-      Scalar q = RealScalar(2)*m01*mat(2,1) + m02*(mat(2,2) - mat(1,1));
-      diag[1] = mat(1,1) + m02*q;
-      diag[2] = mat(2,2) - m02*q;
-      subdiag[0] = beta;
-      subdiag[1] = mat(2,1) - m01 * q;
-      if (extractQ)
-      {
-        mat << 1,   0,    0,
-               0, m01,  m02,
-               0, m02, -m01;
-      }
-    }
-  }
-};
-
-/** \internal
-  * Trivial specialization for 1x1 matrices
-  */
-template<typename MatrixType, bool IsComplex>
-struct tridiagonalization_inplace_selector<MatrixType,1,IsComplex>
-{
-  typedef typename MatrixType::Scalar Scalar;
-
-  template<typename DiagonalType, typename SubDiagonalType, typename CoeffVectorType>
-  static EIGEN_DEVICE_FUNC
-  void run(MatrixType& mat, DiagonalType& diag, SubDiagonalType&, CoeffVectorType&, bool extractQ)
-  {
-    diag(0,0) = numext::real(mat(0,0));
-    if(extractQ)
-      mat(0,0) = Scalar(1);
-  }
-};
-
-/** \internal
-  * \eigenvalues_module \ingroup Eigenvalues_Module
-  *
-  * \brief Expression type for return value of Tridiagonalization::matrixT()
-  *
-  * \tparam MatrixType type of underlying dense matrix
-  */
-template<typename MatrixType> struct TridiagonalizationMatrixTReturnType
-: public ReturnByValue<TridiagonalizationMatrixTReturnType<MatrixType> >
-{
-  public:
-    /** \brief Constructor.
-      *
-      * \param[in] mat The underlying dense matrix
-      */
-    TridiagonalizationMatrixTReturnType(const MatrixType& mat) : m_matrix(mat) { }
-
-    template <typename ResultType>
-    inline void evalTo(ResultType& result) const
-    {
-      result.setZero();
-      result.template diagonal<1>() = m_matrix.template diagonal<-1>().conjugate();
-      result.diagonal() = m_matrix.diagonal();
-      result.template diagonal<-1>() = m_matrix.template diagonal<-1>();
-    }
-
-    EIGEN_CONSTEXPR Index rows() const EIGEN_NOEXCEPT { return m_matrix.rows(); }
-    EIGEN_CONSTEXPR Index cols() const EIGEN_NOEXCEPT { return m_matrix.cols(); }
-
-  protected:
-    typename MatrixType::Nested m_matrix;
-};
-
-} // end namespace internal
-
-} // end namespace Eigen
-
-#endif // EIGEN_TRIDIAGONALIZATION_H