scout-browser 4.99.0__py3-none-any.whl → 4.100.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (64) hide show
  1. scout/adapter/mongo/case.py +30 -15
  2. scout/adapter/mongo/clinvar.py +23 -31
  3. scout/adapter/mongo/event.py +14 -4
  4. scout/adapter/mongo/omics_variant.py +14 -1
  5. scout/adapter/mongo/query.py +24 -1
  6. scout/adapter/mongo/variant.py +37 -19
  7. scout/adapter/mongo/variant_loader.py +159 -176
  8. scout/build/individual.py +3 -1
  9. scout/commands/download/ensembl.py +1 -2
  10. scout/commands/load/research.py +2 -3
  11. scout/commands/update/individual.py +1 -0
  12. scout/constants/__init__.py +7 -2
  13. scout/constants/igv_tracks.py +4 -3
  14. scout/constants/indexes.py +5 -4
  15. scout/constants/query_terms.py +1 -0
  16. scout/models/case/case.py +1 -0
  17. scout/models/case/case_loading_models.py +3 -1
  18. scout/parse/ensembl.py +8 -3
  19. scout/server/app.py +6 -0
  20. scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html +10 -0
  21. scout/server/blueprints/cases/controllers.py +9 -3
  22. scout/server/blueprints/cases/templates/cases/case_report.html +25 -13
  23. scout/server/blueprints/cases/templates/cases/chanjo2_form.html +1 -1
  24. scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html +1 -1
  25. scout/server/blueprints/cases/templates/cases/gene_panel.html +1 -1
  26. scout/server/blueprints/cases/templates/cases/utils.html +19 -0
  27. scout/server/blueprints/clinvar/controllers.py +5 -1
  28. scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html +34 -12
  29. scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html +1 -1
  30. scout/server/blueprints/diagnoses/static/diagnoses.js +8 -1
  31. scout/server/blueprints/institutes/static/variants_list_scripts.js +9 -1
  32. scout/server/blueprints/institutes/templates/overview/institute_sidebar.html +9 -1
  33. scout/server/blueprints/mme/__init__.py +1 -0
  34. scout/server/blueprints/mme/controllers.py +18 -0
  35. scout/server/blueprints/mme/templates/mme/mme_submissions.html +153 -0
  36. scout/server/blueprints/mme/views.py +34 -0
  37. scout/server/blueprints/panels/templates/panels/panel.html +19 -6
  38. scout/server/blueprints/phenotypes/templates/phenotypes/hpo_terms.html +8 -1
  39. scout/server/blueprints/variant/controllers.py +19 -10
  40. scout/server/blueprints/variant/templates/variant/acmg.html +9 -0
  41. scout/server/blueprints/variant/templates/variant/cancer-variant.html +1 -1
  42. scout/server/blueprints/variant/templates/variant/components.html +19 -16
  43. scout/server/blueprints/variant/templates/variant/sv-variant.html +2 -2
  44. scout/server/blueprints/variant/templates/variant/utils.html +20 -8
  45. scout/server/blueprints/variant/templates/variant/variant.html +42 -1
  46. scout/server/blueprints/variant/views.py +12 -0
  47. scout/server/blueprints/variants/controllers.py +17 -9
  48. scout/server/blueprints/variants/forms.py +8 -3
  49. scout/server/blueprints/variants/templates/variants/components.html +8 -2
  50. scout/server/blueprints/variants/templates/variants/indicators.html +11 -13
  51. scout/server/blueprints/variants/templates/variants/utils.html +28 -23
  52. scout/server/extensions/bionano_extension.py +0 -1
  53. scout/server/extensions/chanjo2_extension.py +54 -13
  54. scout/server/links.py +15 -0
  55. scout/server/static/bs_styles.css +34 -6
  56. scout/server/templates/utils.html +9 -10
  57. scout/server/utils.py +18 -0
  58. scout/utils/ensembl_biomart_clients.py +1 -0
  59. scout/utils/scout_requests.py +1 -3
  60. {scout_browser-4.99.0.dist-info → scout_browser-4.100.0.dist-info}/METADATA +1 -1
  61. {scout_browser-4.99.0.dist-info → scout_browser-4.100.0.dist-info}/RECORD +64 -60
  62. {scout_browser-4.99.0.dist-info → scout_browser-4.100.0.dist-info}/WHEEL +0 -0
  63. {scout_browser-4.99.0.dist-info → scout_browser-4.100.0.dist-info}/entry_points.txt +0 -0
  64. {scout_browser-4.99.0.dist-info → scout_browser-4.100.0.dist-info}/licenses/LICENSE +0 -0
@@ -4,14 +4,14 @@ scout/adapter/client.py,sha256=IuajRsEwTG41ZP14X09Q1Cj94zIgmIvUtlXfcAFn0EA,1513
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  scout/adapter/mongo/__init__.py,sha256=NdHYCUXWUAuX5cUS3-6HCws2hW9uoGep8i0SC-oJd3k,31
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  scout/adapter/mongo/acmg.py,sha256=v2Zuw-6APVmcnBnNXa18WJEu2vj5GUhZNiKMkruJsBI,4170
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  scout/adapter/mongo/base.py,sha256=iIa2AjGNztKHcZzolY0T6r7Oh0guj6R1putztp4OTNY,4427
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- scout/adapter/mongo/case.py,sha256=Z1RuWHRm_5sddOujntFbj8fGhg9AdgUgrUb2Qqapiug,65353
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+ scout/adapter/mongo/case.py,sha256=BImiGlUE7pRuXY-CUg5CENuSfM3TVJxNgvQSAJQ1-KY,66015
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  scout/adapter/mongo/case_events.py,sha256=slHR4XJF9vRuEbuInJKMMAImLF8m7tHWVfGP42fbXr0,26859
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  scout/adapter/mongo/case_group.py,sha256=tG8DuO0rNYepV4k0yCGPqssODErc0HMsAypg3mfhcV0,1575
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  scout/adapter/mongo/ccv.py,sha256=VIz-Yqzm-1UVPDKvZkBllO4BOKXzvKCXcQUjTtZCHTI,4165
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- scout/adapter/mongo/clinvar.py,sha256=tczC39O3DFDkYgjt2RDgkkG-x1Mvx_99Hw7dAbIQ5gk,19838
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+ scout/adapter/mongo/clinvar.py,sha256=e11k6mkJNjGOAENx9vaXGl8SOWM88Q8e8qtShxeFzuE,19521
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  scout/adapter/mongo/cytoband.py,sha256=2NoIAoQ7RPqcipiSymD2O9qH8lXscP3T5ejquOrD7uQ,2622
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  scout/adapter/mongo/disease_terms.py,sha256=4qcQRLuP5xn_RkB2RlNtwCrONmDuWwdlngZrj87BUEo,5637
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- scout/adapter/mongo/event.py,sha256=NnURFhS5odOXk7So_gGMHmALPAJM0PWzESI4FC06azE,19842
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+ scout/adapter/mongo/event.py,sha256=xC6VdfZUU8tIPKZrCklD-zX3wgfZD09ze5wrpyLbkIA,20245
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  scout/adapter/mongo/filter.py,sha256=rIdjiDJCrNDeTNgssKm7n1HTxne72jvlX2I3FQjQGo8,9687
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  scout/adapter/mongo/hgnc.py,sha256=P80WdIFkpFDeR6Pa0H-pgeScGrZdCviWVL4rqR5Aqvk,16547
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  scout/adapter/mongo/hpo.py,sha256=ps2Pix3sGeea7DenboZVP5j7Vh9WAgX3-sgpbAj0Eck,6871
@@ -19,23 +19,23 @@ scout/adapter/mongo/index.py,sha256=TZPVv6xBWsEtZpBUWp5uhjuPjQMfVss4lZZju49g1Lw,
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  scout/adapter/mongo/institute.py,sha256=SaA1mRxIZHtMfriMnd0yKiup-xSAG5g0ry9Achra9Tk,6646
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  scout/adapter/mongo/managed_variant.py,sha256=mPbp64nMDwAij8zvBbFGjI3MLbk6CC-OO9RTwtEIi44,8451
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  scout/adapter/mongo/matchmaker.py,sha256=amTvFOlUbrt1RmecY_8hPY6bO3j79lc2UbmzlCQcRuk,6378
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- scout/adapter/mongo/omics_variant.py,sha256=rgfHZYElFDNeh9Atx-oNhS3PbKbiDWn4JABGPZ33Vzk,8024
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+ scout/adapter/mongo/omics_variant.py,sha256=0KuzCEsmxXDNgD3rgrwWT-mUANP3sdhl_Ekv2wIDGrU,8539
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  scout/adapter/mongo/panel.py,sha256=d1oMEYAiDGybLmlbbf3-fQdCdU0-T7x2XdIUwZGthYk,20031
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  scout/adapter/mongo/phenomodel.py,sha256=cypSS8YRzu98Bf1kC0orfrLNn_ZQSYCK8e4mNR5PaPY,2572
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- scout/adapter/mongo/query.py,sha256=DqgpPGm9n3lmReHfVMGUNVCTvvMltRXSzaeYW5tDaXc,35327
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+ scout/adapter/mongo/query.py,sha256=zXAT5lWadRbhCNw5w161uCKzoUyTuUSlCm32P8aBa_M,36315
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  scout/adapter/mongo/rank_model.py,sha256=wvDNI4OLf-f7ZYZ_Q_6qi0myxOJCNNJR_-2-_0u2K2M,5712
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  scout/adapter/mongo/transcript.py,sha256=3U1qtyxZ1DnrzdBJm_emJXISMYFKJuX_zAKynUt8NMY,7417
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  scout/adapter/mongo/user.py,sha256=QoQnRWqi_dV3ZwGzBonEU6Ap9TgMDf2x_C5UIqG0pa0,2569
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- scout/adapter/mongo/variant.py,sha256=qejO1Su7vR_6z94meEW9kt-MHQEQeAoFhBc98LUvrTE,35530
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+ scout/adapter/mongo/variant.py,sha256=IMZcRr43b3XsDqi9kpymobAj_CPVQkN_rxLMfxQ75LI,36267
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  scout/adapter/mongo/variant_events.py,sha256=yNnMM58P1LbYFw73rWzti6l2zWa_G93ozUTbVkcz4_I,33475
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- scout/adapter/mongo/variant_loader.py,sha256=H0khshP5i9od-UTPzlRejMoL_CNZlT8jXtqBZ_sWctc,28257
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+ scout/adapter/mongo/variant_loader.py,sha256=8fBEA_SrBJcvDgF5tceYfMQNnZTt6hwM4zcTjOUeRO0,28397
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  scout/build/__init__.py,sha256=GUWEaXTpwsJil_KtrXBQJpZIwCQFSgo8NlK49R9IkA8,521
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  scout/build/acmg.py,sha256=M21MrrP_dtEyOuu6t-jBDdaqYcHPMLcwJlt9fHG2ycE,1523
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  scout/build/case.py,sha256=LtYx6zQcCoGCss48qf7uluzTlXVH0Pl-WhqYzkbIcZ8,11510
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  scout/build/ccv.py,sha256=cfAWSQ5cSBWURkL9_fPm1Y5aRcTIDOE9ieSWaYLufB4,1660
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  scout/build/disease.py,sha256=Zew9AF_z1NbbKcO3uJZ2wgni501SkfnYRgnaCZ4m8FY,2020
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  scout/build/hpo.py,sha256=LJBCTq-x09D0CSKcUHB8a6ynuUrVh_7Ia0ooA1BxMys,1207
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- scout/build/individual.py,sha256=6Lg3ty8gdEG2O9BioDk_Fd9mAXb9QgibSzB7IRLTPJk,5195
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+ scout/build/individual.py,sha256=2EBcuh23xUDeP2F5kVPAh1cAoGp_xMpFXEbSBmyxeG8,5310
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  scout/build/institute.py,sha256=CZKn-cFbh0cWO2ySoRV_P1nYFizlyvu50LKrtAz-PLo,1330
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  scout/build/managed_variant.py,sha256=krcQBc4LLxlnUQwXuV2FxNLiSkMoIkLxQueYFl04Vyo,1666
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  scout/build/panel.py,sha256=smhtynG_ggNgUyuAGqg_-m1UMnBHhrk2ALutYoNTTec,4273
@@ -62,7 +62,7 @@ scout/commands/delete/__init__.py,sha256=6Z97FsWMqyKqF64Anl1zwljVNTfjJUCI7yylxIE
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  scout/commands/delete/delete_command.py,sha256=c-cWdtc0VCLVLL5hpMxSuyaBiYCppm403eRoLhD1SSo,14568
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  scout/commands/download/__init__.py,sha256=mfDzxqKzJ0LgfPBN_fehkdX5BPy1FJ3rauA3ORLIjCM,39
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  scout/commands/download/download_command.py,sha256=m5CKefst3qhs4urfNu1A2TERisUb_5WPn-wn9bGCDr0,736
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- scout/commands/download/ensembl.py,sha256=Zr3seYt9DiadiJrGUTDcnuiopIO1PVFDDurP_sWg6Mg,2644
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+ scout/commands/download/ensembl.py,sha256=_kdtL3B2fdW-ntmOU1QpFw1ji8ysHSLdDsBXGtCiyVU,2631
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  scout/commands/download/everything.py,sha256=KJ0xKeIx7Rtxv38XRE2RVYBTqec9UXh6LKrozj_6Mwo,1426
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  scout/commands/download/exac.py,sha256=Hy-RKnjlPRvvMgkExpyrxdjFXW_kPUvS012SyqYp41E,1052
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  scout/commands/download/hgnc.py,sha256=Htp0uOhHDAqSrfIG7xRg2WE8ZKO00chOwW1xqv-OzC8,890
@@ -91,7 +91,7 @@ scout/commands/load/institute.py,sha256=EYbDeWmpeRl0_jBnsckAp6qua5VyZKpczoHfADfY
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  scout/commands/load/region.py,sha256=psICLlMf5WBdSCgXsJZUsM8fICsTJB3Q6U6dB5S6w_8,869
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  scout/commands/load/report.py,sha256=DrnyOJcLbOUUJHzI3jwlj955zYohvjuTeeoeUS_ZU8Q,3564
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- scout/commands/load/research.py,sha256=7B-Xo5oAHB69szKp4nQM-vITVKstLQ8zLkaQ3TtiMiw,4458
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+ scout/commands/load/research.py,sha256=t5a6kVVPX3aZtDx20VNNXhkAGTB_gCln5Ejjy_JjYGE,4418
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@@ -103,7 +103,7 @@ scout/commands/update/compounds.py,sha256=vwCtb6045tGovKWHqY_uL8w1l9rZ_Hxlt0gUU0
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  scout/commands/update/genes.py,sha256=GhYIn2zWrAZMhdJjzzrpo8AquFqr7XOvosOk8lg4Zwk,6989
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  scout/commands/update/hpo.py,sha256=eyCuUlUwPmyP0oLh1olXhdqInlUXDdLe8ylgTlHWi-g,1339
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- scout/commands/update/individual.py,sha256=s4HvDuAzjjs7geyUBmt8rSXpf69VWdxwK6xQj-p-oYQ,4159
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+ scout/commands/update/individual.py,sha256=GwhS7P_1PUnUMYDF77Nsez7Vn212JU3cgN-qHRABk8I,4201
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@@ -125,7 +125,7 @@ scout/commands/view/intervals.py,sha256=8Pofxy0DwL2Euh3SdnTLLWsU6DjLNOwIGdxeCS83
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  scout/commands/view/panels.py,sha256=a0fQcP9-SDPuRYV7aEgIGUCYaMN6V47h6finpcdoomU,1098
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  scout/commands/view/transcripts.py,sha256=59WyNNp7zHPJIz9QgzrkoeKaSXTtuLli0VuL8IidEmY,1277
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  scout/commands/view/users.py,sha256=MKlmhDYRM7Yf-Trmi1ijEuqsDIUn326bdFADyDs7XYg,832
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- scout/constants/__init__.py,sha256=omgOXsJ2oxjPdlQqy7teeEAsINaXH5jHTQZPG_B15p0,5918
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+ scout/constants/__init__.py,sha256=F17Q75A0RkvYzXujvqjwP5N2nXKVsIGu5UF1wI8_dYw,5951
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  scout/constants/ccv.py,sha256=YP82qWCrjv3JB8d2LkUdBlBZolk0uF3nhNmkNgmebiI,9734
@@ -135,11 +135,11 @@ scout/constants/disease_parsing.py,sha256=M9_OgsN88oXwKH_XpxdDma0zuWPRoHFQjL19tz
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- scout/constants/igv_tracks.py,sha256=chwGmDIu45lYWix4OdmjEilCxGFHGmkdCJ-MCkRMX4s,4601
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- scout/constants/indexes.py,sha256=mCj_ih9Sv7Qv4DrzLRH30EQZ-Tgyn_Sf6NYapCOlMOc,5793
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+ scout/constants/igv_tracks.py,sha256=584SdO6qJHAcfCxHJQaM4YAnzu4M_uviJIUg6gt_jok,4675
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+ scout/constants/indexes.py,sha256=qe-1ntYqlwqLEDqsJDX6RhAnCYt_2tVZ9ZJ4nWoTIkQ,5843
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- scout/constants/query_terms.py,sha256=3t8JlqaM18-7t1Zd_dEv34hsIyxX_Yd6kjIbw5ZjjV8,1596
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+ scout/constants/query_terms.py,sha256=tuHYdV0nNKCw4UpypOwUgKImaWFimOyn-evAEGdxz-E,1615
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@@ -400,8 +400,8 @@ scout/models/phenomodel.py,sha256=UitSXqy41X4R7K6MT6EeLqZsKNKRhlEfnvXa-Brt2NA,12
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- scout/models/case/case.py,sha256=ENTUh3lrfc6LmOASbNDXiudDZsocHu-2LIhNz64-wPc,5295
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- scout/models/case/case_loading_models.py,sha256=yJBt_ea-4x7SYjRiSsZtSLRGv76B_t8Lg4K68e3-kTA,22108
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+ scout/models/case/case.py,sha256=y4Ympv0YvBJQDqeRcRDwZoQCHLwsr2o1YmYjkk89Nb0,5351
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+ scout/models/case/case_loading_models.py,sha256=J5TdlzW3SrpZiuDYf06DhXUXFG2NkuKrZJlINOqxwj0,22224
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@@ -410,7 +410,7 @@ scout/parse/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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- scout/parse/ensembl.py,sha256=nnqOVtLgWh9wbtHnzGIidnNIvRoOp2bTct5OuAFSSB0,10618
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+ scout/parse/ensembl.py,sha256=PGAxH1aEWcG8sJE7z6h-wAZ84oqSXZ6x9Ifjof_pdLw,10755
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@@ -447,23 +447,23 @@ scout/resources/cytoBand_hg19.txt.gz,sha256=pheUD5b9NlVuvwwnbKwDc2FG80Yg70gvPxVX
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  scout/server/__init__.py,sha256=iwhKnzeBJLKxpRVjvzwiRE63_zNpIBfaKLITauVph-0,24
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- scout/server/app.py,sha256=EzBmodU9u3GFh36LOt2VIxbDHCK7EN6dv0pTsWPa95k,11837
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+ scout/server/app.py,sha256=0Vmhzl7BviwbFA6ZsnXDM-E_KM6kEEWraCUxm8qMvc4,12011
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  scout/server/auto.py,sha256=8B6GwfOaUChkTLuLgYQDFMWlxGuHkEegF1argH2G2Ik,401
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  scout/server/config.py,sha256=5EZ4F37p15tXght-hRa6d7ueX_68r4DXwjvw-mQiTzE,6252
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- scout/server/links.py,sha256=rJTHO4G40uLiWCtPr2n0Q0pBMtSOhjjh7F41jBoufM4,27656
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- scout/server/utils.py,sha256=gg350xD-69px1mZD5BD8bBVVey3DU2Pg8TTAyW8S8QM,13452
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+ scout/server/links.py,sha256=aFCvrtXrc1gnhNhnifapVdUZOZKEpBD2zSxWXdvQLEk,28154
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+ scout/server/utils.py,sha256=1pkT1P4EtzWpJwJkT7k48R4xgaYKgjbVoOI8CRZv1og,14023
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- scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=hn0f89IlESfs9aAdz_vuhi7Qpv71Ti-WDZ-4nAe27iY,10255
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+ scout/server/blueprints/alignviewers/templates/alignviewers/igv_viewer.html,sha256=LwtnLK1O4JIxwibmmBQQ4AupxdJOoFaPpQH91EuA8sk,10728
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  scout/server/blueprints/api/__init__.py,sha256=HR6HjS7ot1K_8Lt5eQdNT154z_FCdHGSigy8r2LpNCI,26
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- scout/server/blueprints/cases/controllers.py,sha256=RqmtP-BnXH4K3ELU9u9Ur9xKLjl6Gt80Cz7HpuuN-zM,56646
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+ scout/server/blueprints/cases/controllers.py,sha256=jao4-oa9K97wA6ExqO-MZNVopCy9lWep53QDwfjGKQo,56725
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  scout/server/blueprints/cases/views.py,sha256=6CcJ3Vgycf8gvBT-InpbNo0enRhDKNPC2W6hp6jDKas,42938
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  scout/server/blueprints/cases/static/case_styles.css,sha256=2Pgc8pFf9DR5HM1sTdAjaRWhjL-bK5bsQnLpH54HZak,541
@@ -471,27 +471,27 @@ scout/server/blueprints/cases/static/edit_pedigree.js,sha256=ntC5fie7SsOYJau8qkk
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  scout/server/blueprints/cases/static/madeline.js,sha256=KHxKMBVlYVJODNu5QkY9hhsGkDJNoaCoCZZ0DRu0YN0,1175
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  scout/server/blueprints/cases/templates/cases/case.html,sha256=6PUQX2BYv5BYxkqZqpa9xVeNDl7MmQVRFLdV-cgWL5I,37522
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  scout/server/blueprints/cases/templates/cases/case_bionano.html,sha256=PLoRv7hDJcHwxhi-0hC9fQSZc7V_aUYHBhhQqcn_2G8,5946
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- scout/server/blueprints/cases/templates/cases/case_report.html,sha256=lum4fIh6ur_bdnMeYLFGXht0LaF2t-T1StAk8F0cZ5o,67481
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+ scout/server/blueprints/cases/templates/cases/case_report.html,sha256=I-cPXq7aij3ZOluPT1CE3-d4S5ml7cSiHhFuiAu5sEI,68780
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  scout/server/blueprints/cases/templates/cases/case_tabular_view.html,sha256=ko-LDUKmIoTazMZ2nFWvPEZsgObU07RwqIkDYFjokoY,4317
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- scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=I2n-aZqJWPzhT5uP0X4deH33gJXu6Ku9Ui28GG1Ilmo,2197
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- scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=Zk-ezZ_Ae7gtDw2pDCvyXk-iFoPcD5y3h1THLPKPgk8,31404
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+ scout/server/blueprints/cases/templates/cases/chanjo2_form.html,sha256=WwdEfVtreTOruPrUJbasGE2Zmt3FiCSHwNEcJVRmefQ,2203
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+ scout/server/blueprints/cases/templates/cases/collapsible_actionbar.html,sha256=9Y1HuieWO3MthNiUWHW7GWP_bqCAps-bZZvoeTWYRww,31403
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  scout/server/blueprints/cases/templates/cases/diseases.html,sha256=ETTQI0Nrl_v86NoX9mFZcvWD-qM1IJoqPmHPWn__Grw,1677
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- scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=7_5Sio4X365HPqDjX49aqBWavmYR15v4c5fHvqpMUw0,12035
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+ scout/server/blueprints/cases/templates/cases/gene_panel.html,sha256=nq-hSL__YD5h8Lc-fid6-hLRODIj9ylppB0VUP2sHDc,12066
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  scout/server/blueprints/cases/templates/cases/individuals_table.html,sha256=KMWlkE-1wJGcCUcv1VigSakwxeXH0qdBGptzLvx8his,11657
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  scout/server/blueprints/cases/templates/cases/institutes_sidebar.html,sha256=u0oPGHJ0ipZ1LkjHkbwlWfkUWc1h6XH1nh3tkbX17z0,4546
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  scout/server/blueprints/cases/templates/cases/matchmaker.html,sha256=kPYnmcZJ1gmx_guW52H7baT9Sw4WE0VJmLGF6N7Z3iA,13639
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  scout/server/blueprints/cases/templates/cases/phenotype.html,sha256=7vz5XPUExD6vc-wdijLKnPzaOFm9mQxOZ_ITAL3y7U8,16420
486
- scout/server/blueprints/cases/templates/cases/utils.html,sha256=hovcovPsbE5npNKaEOAr829q-E9DHP0Fer8ifthtDEg,36061
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+ scout/server/blueprints/cases/templates/cases/utils.html,sha256=gRzonXZN9KJbMH0nHnTqM0fLPBjc7D1R2zErG7olKkk,36939
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  scout/server/blueprints/clinvar/__init__.py,sha256=BV3aH2AbiA2WWrUEMbGd0H9MefFd2eTsRE9ShywbzpI,30
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- scout/server/blueprints/clinvar/controllers.py,sha256=z2_x-rJD6CfOqHEbK6jk0H2TQT02xDjG5RnKOsE01tw,24906
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+ scout/server/blueprints/clinvar/controllers.py,sha256=0glbortB-V8PD2r4ZZ8ODyT9SmUmkvWqFioPh112NBg,24991
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  scout/server/blueprints/clinvar/form.py,sha256=2h42YJzaOtsdEglxqt7F1i2ncjSU_IHNt-m4QOJytK4,5148
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  scout/server/blueprints/clinvar/templates/clinvar/clinvar_howto.html,sha256=phFsRl6Hv94sy4GueBN0MXYbQsW6qmR1NoH-3Iwt2zs,4852
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- scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=zJJehPFmxwL6tTChYQBvtOKn3Q2v6RD8pBLiJF6jHaQ,18095
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- scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=5F86LDpAuM0RbwT2Q1P9NaMFGcMkkwQrhw9iV0WmzFc,33135
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+ scout/server/blueprints/clinvar/templates/clinvar/clinvar_submissions.html,sha256=XvS6WR7xPy3KNB9q9sWzAsXf2QAjkxGeMaJlx6BkeVE,18694
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+ scout/server/blueprints/clinvar/templates/clinvar/multistep_add_variant.html,sha256=HQgc2YZskhhWU-v85yWcdCNSYv875Lyph5jGQE5WkdI,33246
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  scout/server/blueprints/dashboard/__init__.py,sha256=9YTjGeFexyEbl4P-gs7j8VEjyhnVwHZFfz57eTtod1M,69
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  scout/server/blueprints/dashboard/controllers.py,sha256=x6EWKROskF4iyZ5_hAgL7CWp1X3CXHp-7v0JVsDHKZU,9612
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  scout/server/blueprints/dashboard/forms.py,sha256=vbdkujKZxVjiZw2inNhysN3yYMPCdMPbqvKV88DamwI,501
@@ -501,7 +501,7 @@ scout/server/blueprints/dashboard/templates/dashboard/dashboard_general.html,sha
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  scout/server/blueprints/diagnoses/__init__.py,sha256=sORNuH8TXn63RI7KVRSVrMrPwTzZs9gNMfPxtzUZW-U,27
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  scout/server/blueprints/diagnoses/controllers.py,sha256=h-enZ2T8lwPDFl9pVKRZ7Mr41xMyMLtmT4j4CBG6joQ,1654
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  scout/server/blueprints/diagnoses/views.py,sha256=zGfYxrrzE1qNn4wyoBdgKpfozJb6XpVEcC0sBwmPDXA,1252
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- scout/server/blueprints/diagnoses/static/diagnoses.js,sha256=NnPqqDCYsSjVGtRUCfxVWX35B3SqBSGbSH8zx8UVc7o,5341
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+ scout/server/blueprints/diagnoses/static/diagnoses.js,sha256=M1-BqMEBjNi8P7bY5Zf9gJCz5pqCpT3R75MvuFtDqQw,5460
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  scout/server/blueprints/diagnoses/templates/diagnoses/disease_term.html,sha256=8EG07B5kD9FqiYinGOP2JR-y8yontoEvqwkFtp3yRlw,1844
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  scout/server/blueprints/genes/__init__.py,sha256=LPHrbmfVhZpLGGdExFbJp_Du1NKCsVOO_eaevpsNLC8,52
@@ -517,13 +517,13 @@ scout/server/blueprints/institutes/views.py,sha256=PSpf82kW0EKZc24CPhBhuE-wXXGyI
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  scout/server/blueprints/institutes/static/timeline_styles.css,sha256=Vq48ffIidpQmDQhAzfW47O9mGQZEWdlbMtOE8AK-ZEU,2122
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- scout/server/blueprints/institutes/static/variants_list_scripts.js,sha256=gO_ZuJC2jj7Y9x6CEVEVhN1oIE4bIWrTY0_zVcsbRbY,236
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+ scout/server/blueprints/institutes/static/variants_list_scripts.js,sha256=R4rqoCXzVs9RLqXLK851n0mFgN4xytHxSCaRm0egk5M,377
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  scout/server/blueprints/institutes/templates/overview/cases.html,sha256=GOt1Y2PZLVigL3wqi5NAJFqIjQHgaocrbJzFcCUzOfY,12900
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  scout/server/blueprints/institutes/templates/overview/causatives.html,sha256=192pgqUSXQF4qhC933qsYtTwvmlqDctxwHcArERkHc8,1619
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  scout/server/blueprints/institutes/templates/overview/filters.html,sha256=SXvimbFNKfhoh8lpSfnMCTLMb4QghZRxT6W5PteGj68,3519
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  scout/server/blueprints/institutes/templates/overview/gene_variants.html,sha256=EyhBZEdMZQBaJWR_FDeabuWXRSd4Xcqh0teaxVyNvAE,8442
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  scout/server/blueprints/institutes/templates/overview/institute_settings.html,sha256=u4myXSYSo2BY0uXpNs715_HiDvsziMFUl4m6kK9Awuc,5168
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- scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=vQQunXH2Cr8-z2Kc7uTCzsSqIX14Xld44NWqdhpw-Hs,4304
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+ scout/server/blueprints/institutes/templates/overview/institute_sidebar.html,sha256=_v2a-GAB6xEbLdxj5JlH3llM2HS7MFFV2zd89QLkDWU,4740
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  scout/server/blueprints/institutes/templates/overview/timeline.html,sha256=upTv7v4sUwxGfJDSyk8F5zPb61dedG66zgfvh_SMR4M,2289
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  scout/server/blueprints/institutes/templates/overview/users.html,sha256=6dkbDBNLw2b97M2Pd8JImpPoT3FLTcl84oBN3inLJRg,1134
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  scout/server/blueprints/institutes/templates/overview/utils.html,sha256=zkoqVNdBaeUtGFQfCNb7Vo3GlOypjg42XS0GvHlih7o,34297
@@ -546,6 +546,10 @@ scout/server/blueprints/managed_variants/controllers.py,sha256=HQ9jkTMzVEBLEmswX
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  scout/server/blueprints/managed_variants/views.py,sha256=wHOClPy2ZCIQvandia90kG6I6IPhxKVOiAnG4esXh-0,2473
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  scout/server/blueprints/managed_variants/templates/managed_variants/managed_variants.html,sha256=jrhcdUODlhWHiAgVeHowJ0c0wWDYFIU5iMO1oWjsG-A,17311
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+ scout/server/blueprints/mme/__init__.py,sha256=ArTZ_rYGtSHMyvA_3O2M8J0waSIzNwCdN556Wl_Uyzo,26
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+ scout/server/blueprints/mme/controllers.py,sha256=t3uQHT4JQrXD9dg_a41MEp6NXBXqF69ZbzlNVsxMaMo,677
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+ scout/server/blueprints/mme/views.py,sha256=JIEVxjM2lf9duXJh7TW3nLaXRyhfqggNMrq5VxDFq6g,834
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+ scout/server/blueprints/mme/templates/mme/mme_submissions.html,sha256=OUO_3b0qEat82g8CWX9sy6-pyWdTDtIWs-y2fnhM1Io,4681
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  scout/server/blueprints/omics_variants/__init__.py,sha256=8UVXrChArhIvMxtgUcG-udvmlTn56q41iy-naOZw5us,37
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  scout/server/blueprints/omics_variants/controllers.py,sha256=AnM70stvLniJIU3pFUX-InNjuT-7K0RpuAEYa7vM-jw,3912
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  scout/server/blueprints/omics_variants/views.py,sha256=EuF3DCAFuOzX-86al0_IfOqnqH3B_RhypQq313HNfLA,3725
@@ -555,7 +559,7 @@ scout/server/blueprints/panels/controllers.py,sha256=_LXiayDyGcyRQ3Hw13fD8zVYFQ1
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  scout/server/blueprints/panels/forms.py,sha256=DYlhYpnpv7ehf9JlY3HRFwy-TZ5QDHB0RIRaNTAW1jQ,696
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  scout/server/blueprints/panels/templates/panels/gene-edit.html,sha256=KqdUdu93707upLxh31Bwxgd1w4kH-WHtVilSNmAqiRo,3627
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- scout/server/blueprints/panels/templates/panels/panel.html,sha256=MBIxXLQ71Hs5TxJEWLzhnX4Q8YMGqA5EECz-Agn3tyA,16656
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+ scout/server/blueprints/panels/templates/panels/panel.html,sha256=t7OE23uwlSyE4puT0OFWm9xPirnVvSsuIQ23E0MLbI0,17113
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  scout/server/blueprints/panels/templates/panels/panel_pdf_case_hits.html,sha256=uzfZJiMNQiTa_6u4uMuIbK3VXIs-8Rw-MjKujFttZG8,3438
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  scout/server/blueprints/panels/templates/panels/panel_pdf_simple.html,sha256=cpOnQzeKYnQwXosTKk9hkiBigJJLS3Q_y2oHDR3C8io,2744
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  scout/server/blueprints/panels/templates/panels/panels.html,sha256=2IEZFbXzp4MKbx-9UZTW8rZt8pl3iZXPlkvppS3sj0Q,14106
@@ -568,7 +572,7 @@ scout/server/blueprints/phenomodels/templates/phenomodels.html,sha256=nUgJIM-HCO
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  scout/server/blueprints/phenotypes/__init__.py,sha256=U62KsB1aI_b98M9-Ahy1HfxtPNFYOLUS29c5OVqhRN8,50
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  scout/server/blueprints/phenotypes/views.py,sha256=mote8mMsOHSkrXTt5r7rw0DH-RLW2HBt252o8AG8MxI,1853
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- scout/server/blueprints/phenotypes/templates/phenotypes/hpo_terms.html,sha256=2qeLQpcujCicZiNr4AS3cvyLEOVF0uh0o5OJWFGRBk8,2161
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+ scout/server/blueprints/phenotypes/templates/phenotypes/hpo_terms.html,sha256=JDdoy9d0NyBJgJgB59outiCKUmkGQCtDz-sdxJGgEic,2327
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  scout/server/blueprints/public/__init__.py,sha256=M26IYmBXK-dnMmd3Uc2ZuVpjD_xdKKyYNzz0IXFueKo,53
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  scout/server/blueprints/public/static/GMS-logo-dark.png,sha256=NC5uv6QeLaEKCrXHmGywukREM_GsO6jb4aEIN77UYEc,76765
@@ -607,44 +611,44 @@ scout/server/blueprints/public/static/ideograms/chromosome-X.png,sha256=Dj7npcW_
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  scout/server/blueprints/variant/__init__.py,sha256=SlD8-Aoj9Jq9aVTJjtFfsu-0sUVfkzpiEXcH8z9q6dI,54
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- scout/server/blueprints/variant/controllers.py,sha256=BgMsBxlyfb-Qpk_0D_TkkmKMoCr9vn9xSX-uQHywGLk,30715
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+ scout/server/blueprints/variant/controllers.py,sha256=9PCaLiz9AhOnZiImKg_NAZPbpNulUsFAy7NFrb4l_Dk,31057
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  scout/server/blueprints/variant/utils.py,sha256=AWbsGc2dIUBp-r0D_FYlZKxdF3Tr5SHNxL5pAlZeie0,25226
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+ scout/server/blueprints/variant/templates/variant/sv-variant.html,sha256=Jqhp0Co3AsZO1pEM7Iw2Cwa-nYs3KM_TBGxZP9KgfL4,16825
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+ scout/server/blueprints/variant/templates/variant/utils.html,sha256=pZ6-MuDH2U7lVWDwBsX8pnNRuy54-F_ClUIlt3lgFmo,26048
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+ scout/server/blueprints/variant/templates/variant/variant.html,sha256=KbB-MjLehWeD4mEKevx0R6g6PJP0BjJ_cPLBlqOXmPc,20714
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+ scout/server/blueprints/variants/controllers.py,sha256=QxoGZPzGS1kIs-lNa5dZsB19URzwzuTdK9AW0Js8M5k,75746
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- scout/server/blueprints/variants/templates/variants/components.html,sha256=Ir5yRLHBb1xRDCigxaBXfaAICiSwjEQNs8pzj0o2gUY,18751
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+ scout/server/blueprints/variants/templates/variants/components.html,sha256=Oa3MU0DokDDeTx8eD_EQXop5UmjTFHv7SdZUlpCBl04,19150
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+ scout/server/blueprints/variants/templates/variants/indicators.html,sha256=C16ND9Mh_a1-uKMQup2Fp44XXVK_IrCyEuswpaVyOrQ,4955
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- scout/server/blueprints/variants/templates/variants/utils.html,sha256=LfbWXF1A8iHKGwpkXFIzxvHlE3WahLxF6kSs050Sq2w,51741
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+ scout/server/blueprints/variants/templates/variants/utils.html,sha256=oKuxYDtOOoMZGvVYDW55dPmt3OC8pqatcvjtAiTnv34,52908
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- scout/server/extensions/bionano_extension.py,sha256=pMpnK5IkS2nzv7QrSQnfv_xJPJPoQphMUhDGp1UAXco,7109
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- scout/server/extensions/chanjo2_extension.py,sha256=rLEIKJxMHkCCrxVPlAi_7ZoNXWH8uFCYFt6fBVI5t9o,2830
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+ scout/server/extensions/bionano_extension.py,sha256=Ov645TQgRusDapqqw82XK1QkTR_pI76-jcQRR2qKnmA,7097
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+ scout/server/extensions/chanjo2_extension.py,sha256=AQe5mwN2UrgFYGEq9YtTQddaHCeM2oomUX_sqnH2Sk8,4618
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  scout/server/extensions/gens_extension.py,sha256=KOF-pP4DiRVQkygthAq6XCHnZwAGHo1kjIxmvW7ItYI,1003
@@ -655,7 +659,7 @@ scout/server/extensions/mongo_extension.py,sha256=bKB0K5ibp-BWynOTgzBJd5qIYO0S9z
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- scout/server/static/bs_styles.css,sha256=2Ui1r1JjEJe3WfAcExDtr2iMW3laypo16elnLi0AZFU,6463
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+ scout/server/static/bs_styles.css,sha256=J1esUuj8P94NRM4r_J_1ZVIWBzxHKej3TV4xZBVwP_s,6987
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  scout/server/static/humans.txt,sha256=UdqAR07_5LAWWfgH2Ty4RR8BhoHS1WXpx9euKtXqqhs,259
@@ -663,7 +667,7 @@ scout/server/static/robots.txt,sha256=fFX0beQN4x3mzR3evnZjrOUYOTNkezYAwqMowTUpmx
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- scout/server/templates/utils.html,sha256=Wd-glkGqmfJeusnqi1fIjCBSgUflWh0V3MOAnr5V_MU,13000
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+ scout/server/templates/utils.html,sha256=0FpSmFLBAOTApGntcIW9YKhqXn6ABDt51aOidx3QtYM,12818
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  scout/update/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
@@ -676,17 +680,17 @@ scout/utils/convert.py,sha256=asrsis3zkt9jXzseRmCqSa4_t1UT73HPPQRW-DKDdqE,1794
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- scout/utils/ensembl_biomart_clients.py,sha256=G-dhfIywMphvJreBe_vFhUqRWOV-YaAt5sG1yR8qBeg,1206
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+ scout/utils/ensembl_biomart_clients.py,sha256=OFf2yAOrmiGBeUkvNyWLO9T_NsPILz3vbme4_Qv9oL8,1236
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- scout/utils/scout_requests.py,sha256=4UWE4PdpUyJ9h6CtvdrD69tQDBDTZk318-v-xHnWbEs,12796
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+ scout/utils/scout_requests.py,sha256=6R8boknrfwlmrRQ2txD81lfVtqUK_iabywEiVyIiZfQ,12685
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- scout_browser-4.99.0.dist-info/METADATA,sha256=TunFqZwiWX8UD4kIdLTmnVvT9hlyL8nGOvJUcSV-Gps,15526
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- scout_browser-4.99.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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- scout_browser-4.99.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
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- scout_browser-4.99.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
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- scout_browser-4.99.0.dist-info/RECORD,,
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+ scout_browser-4.100.0.dist-info/METADATA,sha256=PcLum19GtGQ2ntN26MMHAh-HrssZ8sPmMruaVNI2X-Y,15527
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+ scout_browser-4.100.0.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
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+ scout_browser-4.100.0.dist-info/entry_points.txt,sha256=q_mxFwbMFTwXRDDIRVcqKram2ubMVmvs3CSNvZri1nY,45
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+ scout_browser-4.100.0.dist-info/licenses/LICENSE,sha256=TM1Y9Cqbwk55JVfxD-_bpGLtZQAeN9RovQlqHK6eOTY,1485
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+ scout_browser-4.100.0.dist-info/RECORD,,