scitex 2.16.2__py3-none-any.whl → 2.17.0__py3-none-any.whl

scitex/dev/plt/data/mpl/dir_ax.txt

@@ -0,0 +1,459 @@
+ArtistList
+_AxesBase__clear
+_PROPERTIES_EXCLUDED_FROM_SET
+__annotations__
+__class__
+__delattr__
+__dict__
+__dir__
+__doc__
+__eq__
+__format__
+__ge__
+__getattribute__
+__getstate__
+__gt__
+__hash__
+__init__
+__init_subclass__
+__le__
+__lt__
+__module__
+__ne__
+__new__
+__reduce__
+__reduce_ex__
+__repr__
+__setattr__
+__setstate__
+__sizeof__
+__str__
+__subclasshook__
+__weakref__
+_add_text
+_adjustable
+_agg_filter
+_alias_map
+_alpha
+_anchor
+_animated
+_aspect
+_autotitlepos
+_axes
+_axes_locator
+_axis_map
+_axis_names
+_axisbelow
+_box_aspect
+_callbacks
+_check_no_units
+_children
+_clipon
+_clippath
+_cm_set
+_colorbars
+_convert_dx
+_current_image
+_different_canvas
+_errorevery_to_mask
+_facecolor
+_fill_between_process_units
+_fill_between_x_or_y
+_forward_navigation_events
+_frameon
+_fully_clipped_to_axes
+_gci
+_gen_axes_patch
+_gen_axes_spines
+_get_aspect_ratio
+_get_lines
+_get_pan_points
+_get_patches_for_fill
+_get_view
+_gid
+_gridOn
+_in_layout
+_init_axis
+_internal_update
+_label
+_label_outer_xaxis
+_label_outer_yaxis
+_left_title
+_make_twin_axes
+_mouseover
+_mouseover_set
+_navigate
+_navigate_mode
+_originalPosition
+_parent_figure
+_parse_bar_color_args
+_parse_scatter_color_args
+_path_effects
+_pcolorargs
+_picker
+_position
+_prepare_view_from_bbox
+_process_unit_info
+_projection_init
+_quiver_units
+_rasterization_zorder
+_rasterized
+_remove_legend
+_remove_method
+_request_autoscale_view
+_right_title
+_sci
+_set_alpha_for_array
+_set_artist_props
+_set_gc_clip
+_set_lim_and_transforms
+_set_position
+_set_title_offset_trans
+_set_view
+_set_view_from_bbox
+_shared_axes
+_sharex
+_sharey
+_sketch
+_snap
+_stale
+_stale_viewlims
+_sticky_edges
+_subclass_uses_cla
+_subplotspec
+_tight
+_transform
+_transformSet
+_twinned_axes
+_unit_change_handler
+_unstale_viewLim
+_update_image_limits
+_update_line_limits
+_update_patch_limits
+_update_props
+_update_set_signature_and_docstring
+_update_title_position
+_update_transScale
+_url
+_use_sticky_edges
+_validate_converted_limits
+_viewLim
+_visible
+_xaxis_transform
+_xmargin
+_yaxis_transform
+_ymargin
+acorr
+add_artist
+add_callback
+add_child_axes
+add_collection
+add_container
+add_image
+add_line
+add_patch
+add_table
+angle_spectrum
+annotate
+apply_aspect
+arrow
+artists
+autoscale
+autoscale_view
+axes
+axhline
+axhspan
+axis
+axison
+axline
+axvline
+axvspan
+bar
+bar_label
+barbs
+barh
+bbox
+boxplot
+broken_barh
+bxp
+callbacks
+can_pan
+can_zoom
+child_axes
+cla
+clabel
+clear
+clipbox
+cohere
+collections
+containers
+contains
+contains_point
+contour
+contourf
+convert_xunits
+convert_yunits
+csd
+dataLim
+drag_pan
+draw
+draw_artist
+ecdf
+end_pan
+errorbar
+eventplot
+figure
+fill
+fill_between
+fill_betweenx
+findobj
+fmt_xdata
+fmt_ydata
+format_coord
+format_cursor_data
+format_xdata
+format_ydata
+get_adjustable
+get_agg_filter
+get_alpha
+get_anchor
+get_animated
+get_aspect
+get_autoscale_on
+get_autoscalex_on
+get_autoscaley_on
+get_axes_locator
+get_axisbelow
+get_box_aspect
+get_children
+get_clip_box
+get_clip_on
+get_clip_path
+get_cursor_data
+get_data_ratio
+get_default_bbox_extra_artists
+get_facecolor
+get_fc
+get_figure
+get_forward_navigation_events
+get_frame_on
+get_gid
+get_gridspec
+get_images
+get_in_layout
+get_label
+get_legend
+get_legend_handles_labels
+get_lines
+get_mouseover
+get_navigate
+get_navigate_mode
+get_path_effects
+get_picker
+get_position
+get_rasterization_zorder
+get_rasterized
+get_shared_x_axes
+get_shared_y_axes
+get_sketch_params
+get_snap
+get_subplotspec
+get_tightbbox
+get_title
+get_transform
+get_transformed_clip_path_and_affine
+get_url
+get_visible
+get_window_extent
+get_xaxis
+get_xaxis_text1_transform
+get_xaxis_text2_transform
+get_xaxis_transform
+get_xbound
+get_xgridlines
+get_xlabel
+get_xlim
+get_xmajorticklabels
+get_xmargin
+get_xminorticklabels
+get_xscale
+get_xticklabels
+get_xticklines
+get_xticks
+get_yaxis
+get_yaxis_text1_transform
+get_yaxis_text2_transform
+get_yaxis_transform
+get_ybound
+get_ygridlines
+get_ylabel
+get_ylim
+get_ymajorticklabels
+get_ymargin
+get_yminorticklabels
+get_yscale
+get_yticklabels
+get_yticklines
+get_yticks
+get_zorder
+grid
+has_data
+have_units
+hexbin
+hist
+hist2d
+hlines
+ignore_existing_data_limits
+images
+imshow
+in_axes
+indicate_inset
+indicate_inset_zoom
+inset_axes
+invert_xaxis
+invert_yaxis
+is_transform_set
+label_outer
+legend
+legend_
+lines
+locator_params
+loglog
+magnitude_spectrum
+margins
+matshow
+minorticks_off
+minorticks_on
+mouseover
+name
+patch
+patches
+pchanged
+pcolor
+pcolorfast
+pcolormesh
+phase_spectrum
+pick
+pickable
+pie
+plot
+plot_date
+properties
+psd
+quiver
+quiverkey
+redraw_in_frame
+relim
+remove
+remove_callback
+reset_position
+scatter
+secondary_xaxis
+secondary_yaxis
+semilogx
+semilogy
+set
+set_adjustable
+set_agg_filter
+set_alpha
+set_anchor
+set_animated
+set_aspect
+set_autoscale_on
+set_autoscalex_on
+set_autoscaley_on
+set_axes_locator
+set_axis_off
+set_axis_on
+set_axisbelow
+set_box_aspect
+set_clip_box
+set_clip_on
+set_clip_path
+set_facecolor
+set_fc
+set_figure
+set_forward_navigation_events
+set_frame_on
+set_gid
+set_in_layout
+set_label
+set_mouseover
+set_navigate
+set_navigate_mode
+set_path_effects
+set_picker
+set_position
+set_prop_cycle
+set_rasterization_zorder
+set_rasterized
+set_sketch_params
+set_snap
+set_subplotspec
+set_title
+set_transform
+set_url
+set_visible
+set_xbound
+set_xlabel
+set_xlim
+set_xmargin
+set_xscale
+set_xticklabels
+set_xticks
+set_ybound
+set_ylabel
+set_ylim
+set_ymargin
+set_yscale
+set_yticklabels
+set_yticks
+set_zorder
+sharex
+sharey
+specgram
+spines
+spy
+stackplot
+stairs
+stale
+stale_callback
+start_pan
+stem
+step
+sticky_edges
+streamplot
+table
+tables
+text
+texts
+tick_params
+ticklabel_format
+title
+titleOffsetTrans
+transAxes
+transData
+transLimits
+transScale
+tricontour
+tricontourf
+tripcolor
+triplot
+twinx
+twiny
+update
+update_datalim
+update_from
+use_sticky_edges
+viewLim
+violin
+violinplot
+vlines
+xaxis
+xaxis_date
+xaxis_inverted
+xcorr
+yaxis
+yaxis_date
+yaxis_inverted
+zorder

scitex/dev/plt/mpl/get_dir_ax.py

@@ -21,7 +21,7 @@ def main(
     CONFIG=stx.INJECTED,
     plt=stx.INJECTED,
     COLORS=stx.INJECTED,
-    rng=stx.INJECTED,
+    rngg=stx.INJECTED,
     logger=stx.INJECTED,
 ):
     """Help message for `$ python __file__ --help`"""

scitex/dev/plt/mpl/get_signatures.py

@@ -146,7 +146,7 @@ def main(
     CONFIG=stx.INJECTED,
     plt=stx.INJECTED,
     COLORS=stx.INJECTED,
-    rng=stx.INJECTED,
+    rngg=stx.INJECTED,
     logger=stx.INJECTED,
 ):
     """Inspect and display matplotlib plotting function signatures."""

scitex/dev/plt/mpl/get_signatures_details.py

@@ -492,7 +492,7 @@ def main(
     CONFIG=stx.INJECTED,
     plt=stx.INJECTED,
     COLORS=stx.INJECTED,
-    rng=stx.INJECTED,
+    rngg=stx.INJECTED,
     logger=stx.INJECTED,
 ):
     """Extract signatures with flattened *args/**kwargs."""

scitex/io/_load.py

@@ -286,7 +286,6 @@ def load(
     >>> # Load file without extension (e.g., UUID PDF)
     >>> pdf = load('f2694ccb-1b6f-4994-add8-5111fd4d52f1', ext='pdf')
     """
-
     # Don't use clean_path as it breaks relative paths like ./file.txt
     # lpath = clean_path(lpath)
 
@@ -445,6 +444,14 @@ def load(
             if verbose:
                 print(f"[Cache STORED] Cached data for: {lpath}")
 
+        # Track input for verification (if session is active)
+        try:
+            from scitex.verify import on_io_load
+
+            on_io_load(lpath)
+        except Exception:
+            pass  # Silent fail - don't interrupt load operations
+
         return result
     except (ValueError, FileNotFoundError) as e:
         raise ValueError(f"Error loading file {lpath}: {str(e)}")

scitex/io/_save.py

@@ -71,6 +71,7 @@ def save(
     crop_margin_mm: float = 1.0,
     metadata_extra: dict = None,
     json_schema: str = "editable",
+    track: bool = True,
     **kwargs,
 ) -> None:
     """
@@ -102,6 +103,8 @@ def save(
         Additional metadata to merge with auto-collected metadata.
     json_schema : str, optional
         Schema type for JSON metadata output. Default is "editable".
+    track : bool, optional
+        If True, track this file in verification system. Default is True.
     **kwargs
         Additional keyword arguments for the underlying save function.
     """
@@ -149,6 +152,15 @@ def save(
         # Symbolic links
         _symlink(spath, spath_cwd, symlink_from_cwd, verbose)
         _symlink_to(spath_final, symlink_to, verbose)
+
+        # Track output for verification (if session is active)
+        try:
+            from scitex.verify import on_io_save
+
+            on_io_save(spath_final, track=track)
+        except Exception:
+            pass  # Silent fail - don't interrupt save operations
+
         return Path(spath)
 
     except AssertionError:

scitex/scholar/data/README.md

@@ -0,0 +1,44 @@
+# Scholar Data Directory
+
+User-provided data files. This directory is gitignored.
+
+## Structure
+
+```
+data/
+└── impact_factor/
+    ├── JCR_IF_2024.xlsx         # JCR Excel file (user-provided)
+    ├── JCR_IF_2024.db           # SQLite database (generated)
+    └── impact_factor.db -> JCR_IF_2024.db (symlink to active DB)
+```
+
+## Important
+
+- **Data NOT included in git**: This directory is gitignored
+- **User responsibility**: Users must provide their own JCR data
+- **Licensing**: Users must ensure proper licensing for any data
+
+## Adding JCR Data
+
+1. Obtain JCR Excel file from Clarivate or authorized source
+2. Place in `src/scitex/scholar/data/impact_factor/JCR_IF_YYYY.xlsx`
+3. Build database (optional - will auto-build if needed):
+   ```python
+   from scitex.scholar.impact_factor.jcr import build_database
+   build_database("JCR_IF_2024.xlsx")
+   ```
+
+## File Naming Convention
+
+- Excel: `JCR_IF_YYYY.xlsx` (e.g., JCR_IF_2024.xlsx)
+- Database: `JCR_IF_YYYY.db` (e.g., JCR_IF_2024.db)
+- Symlink: `impact_factor.db` → points to current year DB
+
+## Legal Notice
+
+JCR data is proprietary (Clarivate Analytics). Users are responsible for:
+- Obtaining data through authorized channels
+- Compliance with licensing terms
+- Not distributing data files
+
+We provide only the code to use the data, not the data itself.