scitex 2.16.2__py3-none-any.whl → 2.17.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scitex/_mcp_resources/_cheatsheet.py +1 -1
- scitex/_mcp_resources/_modules.py +1 -1
- scitex/_mcp_tools/__init__.py +2 -0
- scitex/_mcp_tools/verify.py +256 -0
- scitex/cli/main.py +2 -0
- scitex/cli/verify.py +476 -0
- scitex/dev/plt/__init__.py +1 -1
- scitex/dev/plt/data/mpl/PLOTTING_FUNCTIONS.yaml +90 -0
- scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES.yaml +1571 -0
- scitex/dev/plt/data/mpl/PLOTTING_SIGNATURES_DETAILED.yaml +6262 -0
- scitex/dev/plt/data/mpl/SIGNATURES_FLATTENED.yaml +1274 -0
- scitex/dev/plt/data/mpl/dir_ax.txt +459 -0
- scitex/dev/plt/mpl/get_dir_ax.py +1 -1
- scitex/dev/plt/mpl/get_signatures.py +1 -1
- scitex/dev/plt/mpl/get_signatures_details.py +1 -1
- scitex/io/_load.py +8 -1
- scitex/io/_save.py +12 -0
- scitex/scholar/data/.gitkeep +0 -0
- scitex/scholar/data/README.md +44 -0
- scitex/scholar/data/bib_files/bibliography.bib +1952 -0
- scitex/scholar/data/bib_files/neurovista.bib +277 -0
- scitex/scholar/data/bib_files/neurovista_enriched.bib +441 -0
- scitex/scholar/data/bib_files/neurovista_enriched_enriched.bib +441 -0
- scitex/scholar/data/bib_files/neurovista_processed.bib +338 -0
- scitex/scholar/data/bib_files/openaccess.bib +89 -0
- scitex/scholar/data/bib_files/pac-seizure_prediction_enriched.bib +2178 -0
- scitex/scholar/data/bib_files/pac.bib +698 -0
- scitex/scholar/data/bib_files/pac_enriched.bib +1061 -0
- scitex/scholar/data/bib_files/pac_processed.bib +0 -0
- scitex/scholar/data/bib_files/pac_titles.txt +75 -0
- scitex/scholar/data/bib_files/paywalled.bib +98 -0
- scitex/scholar/data/bib_files/related-papers-by-coauthors.bib +58 -0
- scitex/scholar/data/bib_files/related-papers-by-coauthors_enriched.bib +87 -0
- scitex/scholar/data/bib_files/seizure_prediction.bib +694 -0
- scitex/scholar/data/bib_files/seizure_prediction_processed.bib +0 -0
- scitex/scholar/data/bib_files/test_complete_enriched.bib +437 -0
- scitex/scholar/data/bib_files/test_final_enriched.bib +437 -0
- scitex/scholar/data/bib_files/test_seizure.bib +46 -0
- scitex/scholar/data/impact_factor/JCR_IF_2022.xlsx +0 -0
- scitex/scholar/data/impact_factor/JCR_IF_2024.db +0 -0
- scitex/scholar/data/impact_factor/JCR_IF_2024.xlsx +0 -0
- scitex/scholar/data/impact_factor/JCR_IF_2024_v01.db +0 -0
- scitex/scholar/data/impact_factor.db +0 -0
- scitex/session/README.md +2 -2
- scitex/session/__init__.py +1 -0
- scitex/session/_decorator.py +57 -33
- scitex/session/_lifecycle/__init__.py +23 -0
- scitex/session/_lifecycle/_close.py +225 -0
- scitex/session/_lifecycle/_config.py +112 -0
- scitex/session/_lifecycle/_matplotlib.py +83 -0
- scitex/session/_lifecycle/_start.py +246 -0
- scitex/session/_lifecycle/_utils.py +186 -0
- scitex/session/_manager.py +40 -3
- scitex/session/template.py +1 -1
- scitex/template/_templates/plt.py +1 -1
- scitex/template/_templates/session.py +1 -1
- scitex/verify/README.md +312 -0
- scitex/verify/__init__.py +212 -0
- scitex/verify/_chain.py +369 -0
- scitex/verify/_db.py +600 -0
- scitex/verify/_hash.py +187 -0
- scitex/verify/_integration.py +127 -0
- scitex/verify/_rerun.py +253 -0
- scitex/verify/_tracker.py +330 -0
- scitex/verify/_visualize.py +48 -0
- scitex/verify/_viz/__init__.py +56 -0
- scitex/verify/_viz/_colors.py +84 -0
- scitex/verify/_viz/_format.py +302 -0
- scitex/verify/_viz/_json.py +192 -0
- scitex/verify/_viz/_mermaid.py +440 -0
- scitex/verify/_viz/_plotly.py +193 -0
- scitex/verify/_viz/_templates.py +246 -0
- scitex/verify/_viz/_utils.py +56 -0
- {scitex-2.16.2.dist-info → scitex-2.17.0.dist-info}/METADATA +1 -1
- {scitex-2.16.2.dist-info → scitex-2.17.0.dist-info}/RECORD +78 -29
- scitex/scholar/url_finder/.tmp/open_url/KNOWN_RESOLVERS.py +0 -462
- scitex/scholar/url_finder/.tmp/open_url/README.md +0 -223
- scitex/scholar/url_finder/.tmp/open_url/_DOIToURLResolver.py +0 -694
- scitex/scholar/url_finder/.tmp/open_url/_OpenURLResolver.py +0 -1160
- scitex/scholar/url_finder/.tmp/open_url/_ResolverLinkFinder.py +0 -344
- scitex/scholar/url_finder/.tmp/open_url/__init__.py +0 -24
- scitex/session/_lifecycle.py +0 -827
- {scitex-2.16.2.dist-info → scitex-2.17.0.dist-info}/WHEEL +0 -0
- {scitex-2.16.2.dist-info → scitex-2.17.0.dist-info}/entry_points.txt +0 -0
- {scitex-2.16.2.dist-info → scitex-2.17.0.dist-info}/licenses/LICENSE +0 -0
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#!/usr/bin/env python3
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# Timestamp: "2026-02-01 (ywatanabe)"
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# File: /home/ywatanabe/proj/scitex-python/src/scitex/verify/_viz/_templates.py
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"""HTML templates for verification DAG visualization."""
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from __future__ import annotations
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from datetime import datetime
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def get_timestamp() -> str:
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"""Get current timestamp for footer."""
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return datetime.now().strftime("%Y-%m-%d %H:%M:%S")
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def get_html_template(title: str, mermaid_code: str) -> str:
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"""
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Generate sleek HTML template with icons for verification DAG.
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Parameters
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----------
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title : str
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Page title
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mermaid_code : str
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Mermaid diagram code
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Returns
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-------
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str
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Complete HTML document
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"""
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timestamp = get_timestamp()
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return f"""<!DOCTYPE html>
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<html>
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<head>
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<meta charset="UTF-8">
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<title>{title}</title>
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<script src="https://cdn.jsdelivr.net/npm/mermaid/dist/mermaid.min.js"></script>
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<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/6.5.1/css/all.min.css">
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<style>
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:root {{
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--verified-bg: #d4edda;
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--verified-border: #28a745;
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--verified-text: #155724;
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--failed-bg: #f8d7da;
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--failed-border: #dc3545;
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--failed-text: #721c24;
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--file-bg: #fff3cd;
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--file-border: #ffc107;
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--script-bg: #cce5ff;
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--script-border: #4a6baf;
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}}
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body {{
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font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', Roboto, sans-serif;
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margin: 0;
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padding: 20px;
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background: linear-gradient(135deg, #667eea 0%, #764ba2 100%);
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min-height: 100vh;
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}}
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.container {{
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max-width: 1400px;
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margin: 0 auto;
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background: white;
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padding: 30px;
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border-radius: 16px;
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box-shadow: 0 10px 40px rgba(0,0,0,0.2);
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}}
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.header {{
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display: flex;
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align-items: center;
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gap: 15px;
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margin-bottom: 25px;
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padding-bottom: 15px;
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border-bottom: 3px solid var(--script-border);
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}}
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.header-icon {{
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width: 48px;
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height: 48px;
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background: var(--script-border);
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border-radius: 12px;
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display: flex;
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align-items: center;
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justify-content: center;
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color: white;
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font-size: 24px;
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}}
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h1 {{
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color: #333;
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margin: 0;
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font-size: 1.8rem;
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}}
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.legend {{
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display: flex;
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flex-wrap: wrap;
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gap: 20px;
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margin: 20px 0;
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padding: 15px;
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background: linear-gradient(to right, #f8f9fa, #e9ecef);
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border-radius: 12px;
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border: 1px solid #dee2e6;
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}}
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.legend-item {{
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display: flex;
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align-items: center;
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gap: 10px;
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padding: 8px 15px;
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background: white;
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border-radius: 8px;
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box-shadow: 0 2px 4px rgba(0,0,0,0.05);
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}}
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.legend-icon {{
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width: 28px;
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height: 28px;
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border-radius: 6px;
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display: flex;
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align-items: center;
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justify-content: center;
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font-size: 14px;
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}}
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.legend-icon.verified {{
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background: var(--verified-bg);
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color: var(--verified-text);
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border: 2px solid var(--verified-border);
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}}
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.legend-icon.from-scratch {{
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background: var(--verified-bg);
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color: var(--verified-text);
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border: 3px solid var(--verified-border);
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box-shadow: 0 0 0 2px var(--verified-bg);
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}}
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.legend-icon.failed {{
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background: var(--failed-bg);
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color: var(--failed-text);
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border: 2px solid var(--failed-border);
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}}
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.legend-icon.file {{
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background: var(--file-bg);
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color: #856404;
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border: 2px solid var(--file-border);
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}}
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.legend-icon.script {{
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background: var(--script-bg);
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color: #004085;
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border: 2px solid var(--script-border);
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}}
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.legend-text {{
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font-size: 0.9rem;
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color: #495057;
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}}
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.mermaid {{
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margin: 25px 0;
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padding: 20px;
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background: #fafafa;
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border-radius: 12px;
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border: 1px solid #e9ecef;
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overflow-x: auto;
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}}
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.footer {{
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margin-top: 25px;
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padding-top: 15px;
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border-top: 1px solid #e9ecef;
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display: flex;
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justify-content: space-between;
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align-items: center;
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color: #6c757d;
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font-size: 0.85rem;
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}}
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.footer-brand {{
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display: flex;
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align-items: center;
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gap: 8px;
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}}
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.footer-brand i {{
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color: var(--script-border);
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}}
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</style>
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</head>
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<body>
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<div class="container">
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<div class="header">
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<div class="header-icon">
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<i class="fas fa-project-diagram"></i>
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</div>
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<h1>{title}</h1>
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</div>
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<div class="legend">
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<div class="legend-item">
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<span style="font-size:1.2em">🐍</span>
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<span class="legend-text">Python</span>
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</div>
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</div>
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</div>
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<span class="legend-text">Verified</span>
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</div>
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<span class="legend-text">From-scratch</span>
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</div>
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</div>
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{mermaid_code}
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</div>
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<i class="fas fa-flask"></i>
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<span>Generated by SciTeX Verify</span>
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</div>
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<i class="far fa-clock"></i> Generated at: {timestamp}
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</div>
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</div>
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</div>
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<script>
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mermaid.initialize({{
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startOnLoad: true,
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theme: 'default',
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flowchart: {{
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curve: 'basis',
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padding: 20,
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nodeSpacing: 50,
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rankSpacing: 60
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}}
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}});
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</script>
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</body>
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</html>"""
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# EOF
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#!/usr/bin/env python3
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# Timestamp: "2026-02-01 (ywatanabe)"
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# File: /home/ywatanabe/proj/scitex-python/src/scitex/verify/_viz/_utils.py
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"""Utility functions for verification visualization."""
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from .._chain import VerificationStatus, verify_run
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from ._format import format_run_detailed
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def print_verification_summary(
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show_all: bool = False,
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) -> None:
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"""
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Print a summary of verification status to stdout.
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Parameters
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----------
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List of run records
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Show all runs (not just problematic ones)
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"""
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verified = 0
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mismatched = 0
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missing = 0
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print(f"\n{Colors.BOLD}Verification Summary{Colors.RESET}")
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print("=" * 50)
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for run in runs:
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v = verify_run(run["session_id"])
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if v.status == VerificationStatus.VERIFIED:
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verified += 1
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if show_all:
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print(format_run_detailed(v))
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elif v.status == VerificationStatus.MISMATCH:
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mismatched += 1
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print(format_run_detailed(v))
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else:
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missing += 1
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print(format_run_detailed(v))
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print()
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print(f"{Colors.GREEN}●{Colors.RESET} Verified: {verified}")
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print(f"{Colors.RED}●{Colors.RESET} Mismatch: {mismatched}")
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print(f"{Colors.YELLOW}○{Colors.RESET} Missing: {missing}")
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print()
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# EOF
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