scitex 2.16.1__py3-none-any.whl → 2.16.2__py3-none-any.whl

scitex/scholar/url_finder/.tmp/open_url/_ResolverLinkFinder.py

@@ -0,0 +1,344 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+# Timestamp: "2025-07-29 03:10:08 (ywatanabe)"
+# File: /home/ywatanabe/proj/scitex_repo/src/scitex/scholar/open_url/_ResolverLinkFinder.py
+# ----------------------------------------
+from __future__ import annotations
+
+import os
+
+__FILE__ = (
+    "./src/scitex/scholar/open_url/_ResolverLinkFinder.py"
+)
+__DIR__ = os.path.dirname(__FILE__)
+# ----------------------------------------
+
+"""Robust resolver link finder using a prioritized, multi-layered approach.
+
+Priority order:
+1. Link Target (domain matching) - Most reliable
+2. Page Structure (CSS selectors) - Very reliable
+3. Text Patterns - Good fallback
+"""
+
+import re
+from typing import List, Optional
+from urllib.parse import urlparse
+
+from playwright.async_api import ElementHandle, Page
+
+from scitex import logging
+
+logger = logging.getLogger(__name__)
+
+
+class ResolverLinkFinder:
+    """Finds full-text links on resolver pages using multiple strategies."""
+
+    # DOI prefix to publisher domain mapping
+    DOI_TO_DOMAIN = {
+        "10.1038": [
+            "nature.com",
+            "springernature.com",
+        ],  # Nature Publishing Group
+        "10.1016": ["sciencedirect.com", "elsevier.com"],  # Elsevier
+        "10.1002": ["wiley.com", "onlinelibrary.wiley.com"],  # Wiley
+        "10.1007": ["springer.com", "link.springer.com"],  # Springer
+        "10.1126": ["science.org", "sciencemag.org"],  # Science/AAAS
+        "10.1021": ["acs.org", "pubs.acs.org"],  # ACS Publications
+        "10.1111": [
+            "wiley.com",
+            "onlinelibrary.wiley.com",
+        ],  # Wiley (alternative)
+        "10.1080": ["tandfonline.com"],  # Taylor & Francis
+        "10.1177": ["sagepub.com", "journals.sagepub.com"],  # SAGE
+        "10.1093": ["oup.com", "academic.oup.com"],  # Oxford
+        "10.1109": ["ieee.org", "ieeexplore.ieee.org"],  # IEEE
+        "10.1371": ["plos.org", "journals.plos.org"],  # PLOS
+        "10.1073": ["pnas.org"],  # PNAS
+        "10.1136": ["bmj.com"],  # BMJ
+        "10.3389": ["frontiersin.org"],  # Frontiers
+        "10.3390": ["mdpi.com"],  # MDPI
+    }
+
+    # Common resolver page structures
+    STRUCTURE_SELECTORS = [
+        # SFX (ExLibris) - used by many universities
+        "div#fulltext a",
+        "div.sfx-fulltext a",
+        "div.results-title > a",
+        "td.object-cell a",
+        ".getFullTxt a",
+        'div[id*="fulltext"] a',
+        'div[class*="fulltext"] a',
+        # SFX specific selectors for University of Melbourne
+        "a[title*='Wiley Online Library']",
+        "a[href*='wiley.com']",
+        "a[href*='onlinelibrary.wiley.com']",
+        ".sfx-target a",
+        ".target a",
+        "td a[href*='wiley']",
+        # Primo (ExLibris)
+        "prm-full-view-service-container a",
+        "span.availability-status-available a",
+        # Summon (ProQuest)
+        ".summon-fulltext-link",
+        "a.summon-link",
+        # EDS (EBSCO)
+        "a.fulltext-link",
+        ".ft-link a",
+        # Generic patterns
+        "a.full-text-link",
+        "a.fulltext",
+        "a#full-text-link",
+        ".access-link a",
+        ".available-link a",
+    ]
+
+    # Text patterns in priority order
+    TEXT_PATTERNS = [
+        # Most specific
+        "View full text at",
+        "Available from Nature",
+        "Available from ScienceDirect",
+        "Available from Wiley",
+        "Available from Wiley Online Library",
+        "Full text available from",
+        # Common patterns
+        "View full text",
+        "Full Text from Publisher",
+        "Get full text",
+        "Access full text",
+        "Go to article",
+        "Access article",
+        # Generic but reliable
+        "Full Text",
+        "Full text",
+        "Article",
+        "View",
+        "PDF",
+        "Download",
+    ]
+
+    def __init__(self):
+        self._doi_pattern = re.compile(r"10\.\d{4,}/[-._;()/:\w]+")
+
+    def get_expected_domains(self, doi: str) -> List[str]:
+        """Get expected publisher domains for a DOI."""
+        # Extract DOI prefix
+        match = re.match(r"(10\.\d{4,})", doi)
+        if not match:
+            return []
+
+        prefix = match.group(1)
+        return self.DOI_TO_DOMAIN.get(prefix, [])
+
+    async def find_link_async(self, page, doi: str) -> dict:
+        """Find the best full-text link using prioritized strategies."""
+        logger.info(f"Finding resolver link for DOI: {doi}")
+
+        # Strategy 1: Link Target (Most Reliable)
+        link_url = await self._find_by_domain_async(page, doi)
+        if link_url:
+            logger.info("✓ Found link using domain matching (Strategy 1)")
+            return {"success": True, "url": link_url, "method": "domain"}
+
+        # Strategy 2: Page Structure with scoring
+        link_url = await self._find_by_structure_async(page, doi)
+        if link_url:
+            logger.info("✓ Found link using page structure (Strategy 2)")
+            return {"success": True, "url": link_url, "method": "structure"}
+
+        logger.warning("✗ No suitable links found")
+        return {"success": False, "url": None, "method": None}
+
+    async def _find_by_domain_async(self, page: Page, doi: str) -> Optional[str]:
+        """Strategy 1: Find link by expected publisher domain."""
+        expected_domains = self.get_expected_domains(doi)
+        if not expected_domains:
+            logger.debug(f"No known publisher domains for DOI prefix: {doi}")
+            return None
+
+        logger.debug(f"Looking for links to domains: {expected_domains}")
+        all_links = await page.query_selector_all("a[href]")
+
+        for link in all_links:
+            href = await link.get_attribute("href")
+            if not href:
+                continue
+
+            try:
+                parsed = urlparse(href)
+                domain = parsed.netloc.lower()
+
+                for expected in expected_domains:
+                    if expected in domain:
+                        text = await link.inner_text() or ""
+                        logger.info(
+                            f"Found domain match: {domain} (text: '{text[:50]}')"
+                        )
+
+                        if not any(
+                            bad in text.lower()
+                            for bad in ["abstract", "preview", "summary"]
+                        ):
+                            return href
+                        else:
+                            logger.debug(
+                                f"Skipping abstract/preview link: {text}"
+                            )
+            except Exception as e:
+                logger.debug(f"Error parsing URL {href}: {e}")
+
+        return None
+
+    async def _find_by_structure_async(self, page, doi: str):
+        """Find link by page structure with publisher prioritization."""
+        potential_links = []
+        expected_domains = self.get_expected_domains(doi)
+        publisher_keywords = [
+            domain.split(".")[0] for domain in expected_domains
+        ]
+        aggregator_keywords = ["gale", "proquest", "ebsco", "jstor", "onefile"]
+
+        # Gather all possible links
+        for selector in self.STRUCTURE_SELECTORS:
+            try:
+                elements = await page.query_selector_all(selector)
+                logger.debug(
+                    f"Found {len(elements)} elements with selector: {selector}"
+                )
+
+                for element in elements:
+                    if await element.is_visible():
+                        href = await element.get_attribute("href")
+                        text = (await element.inner_text() or "").lower()
+
+                        if href and href.strip():
+                            potential_links.append(
+                                {"href": href, "text": text, "score": 0}
+                            )
+            except Exception as element_error:
+                logger.debug(
+                    f"Error with selector '{selector}': {element_error}"
+                )
+
+        if not potential_links:
+            return None
+
+        # Score the links
+        for link in potential_links:
+            # Highest score for direct publisher match
+            if any(keyword in link["text"] for keyword in publisher_keywords):
+                link["score"] = 3
+            # High score for generic publisher
+            elif "publisher" in link["text"]:
+                link["score"] = 2
+            # Negative score for aggregators
+            elif any(
+                keyword in link["text"] for keyword in aggregator_keywords
+            ):
+                link["score"] = -1
+            # Default neutral score
+            else:
+                link["score"] = 0
+
+        # Sort by score, highest first
+        sorted_links = sorted(
+            potential_links, key=lambda x: x["score"], reverse=True
+        )
+        best_link = sorted_links[0]
+
+        logger.debug(
+            f"Found structural match: '{best_link['text'][:50]}' -> {best_link['href']}"
+        )
+        return best_link["href"]
+
+    async def _find_by_text_async(self, page: Page) -> Optional[str]:
+        """Strategy 3: Find link by text patterns."""
+        for pattern in self.TEXT_PATTERNS:
+            try:
+                selector = f'a:has-text("{pattern}")'
+                link = await page.query_selector(selector)
+                if link and await link.is_visible():
+                    href = await link.get_attribute("href")
+                    if href and href.strip():
+                        logger.debug(
+                            f"Found text match: '{pattern}' -> {href[:100]}"
+                        )
+                        return href
+            except Exception as e:
+                logger.debug(f"Error with text pattern '{pattern}': {e}")
+
+        return None
+
+    async def click_and_wait_async(self, page: Page, link: ElementHandle) -> bool:
+        """Click link and wait for navigation.
+
+        Returns True if navigation succeeded.
+        """
+        initial_url = page.url
+
+        try:
+            # Get link info for logging
+            href = await link.get_attribute("href") or ""
+            text = await link.inner_text() or ""
+            logger.info(f"Clicking link: '{text[:50]}' -> {href[:100]}")
+
+            # Click and wait for navigation
+            await link.click()
+
+            # Wait for either navigation or network idle
+            try:
+                await page.wait_for_load_state("networkidle", timeout=30000)
+            except:
+                # Fallback to domcontentloaded if network doesn't settle
+                await page.wait_for_load_state(
+                    "domcontentloaded", timeout=30000
+                )
+
+            # Additional wait for JavaScript redirects
+            await page.wait_for_timeout(3000)
+
+            # Check if we navigated
+            final_url = page.url
+            if final_url != initial_url:
+                logger.info(
+                    f"Successfully navigated: {initial_url} -> {final_url}"
+                )
+                return True
+            else:
+                logger.warning("No navigation occurred after click")
+                return False
+
+        except Exception as e:
+            logger.error(f"Error during click and navigation: {e}")
+            return False
+
+
+# Convenience function for integration
+async def find_and_click_resolver_link_async(page: Page, doi: str) -> Optional[str]:
+    """Find and click the best resolver link.
+
+    Args:
+        page: Playwright page object
+        doi: Target DOI
+
+    Returns:
+        Final URL after navigation, or None if failed
+    """
+    finder = ResolverLinkFinder()
+
+    # Find link
+    link = await finder.find_link_async(page, doi)
+    if not link:
+        return None
+
+    # Click and navigate
+    success = await finder.click_and_wait_async(page, link)
+    if success:
+        return page.url
+    else:
+        return None
+
+# EOF

scitex/scholar/url_finder/.tmp/open_url/__init__.py

@@ -0,0 +1,24 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+# Timestamp: "2025-07-31 00:53:24 (ywatanabe)"
+# File: /home/ywatanabe/proj/scitex_repo/src/scitex/scholar/open_url/__init__.py
+# ----------------------------------------
+from __future__ import annotations
+
+import os
+
+__FILE__ = (
+    "./src/scitex/scholar/open_url/__init__.py"
+)
+__DIR__ = os.path.dirname(__FILE__)
+# ----------------------------------------
+
+from ._DOIToURLResolver import DOIToURLResolver
+from ._OpenURLResolver import OpenURLResolver
+
+__all__ = [
+    "OpenURLResolver",
+    "DOIToURLResolver",
+]
+
+# EOF

{scitex-2.16.1.dist-info → scitex-2.16.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: scitex
-Version: 2.16.1
+Version: 2.16.2
 Summary: A comprehensive Python library for scientific computing and data analysis
 Project-URL: Homepage, https://github.com/ywatanabe1989/scitex-python
 Project-URL: Documentation, https://scitex.readthedocs.io

{scitex-2.16.1.dist-info → scitex-2.16.2.dist-info}/RECORD

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 scitex/dev/plt/demo_plotters/plot_mpl_axhspan.py,sha256=WetEGSzRbppTvn5VprGNglKuzLMoM8tFXg_N0jMFgFM,704
@@ -1404,32 +1399,6 @@ scitex/scholar/core/_mixins/_savers.py,sha256=DonIcpCaobrRTs_LAuwurYEhsUTQE9otzX
 scitex/scholar/core/_mixins/_search.py,sha256=8SyCtYtyyzTtMP85kFPrOZLK8PvL9dCCoOyI95N-SfI,3721
 scitex/scholar/core/_mixins/_services.py,sha256=rnNtDTBES6RwKJzC0Wpi0G9Xiju2pudrdrSfrftB9dM,3228
 scitex/scholar/core/_mixins/_url_finding.py,sha256=PawfItu2ienUW6Hj155fPT2KsKqm_sc7uukEYAXr-Rk,3241
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 scitex/scholar/docs/02_PIPELINE_ORGANIZATION.md,sha256=8BS_j6S89TiLqDRiODACZsbEMs6EyOiLDj8CgILz4WU,8288
@@ -1584,6 +1553,12 @@ scitex/scholar/storage/_mixins/_symlink_handlers.py,sha256=m63ATAfDmAUDk4shsVf0a
 scitex/scholar/url_finder/README.md,sha256=CGQpOktqpQF_5z_u-pIKMYBAeQZXT9Eh24XaPtfV6HM,2016
 scitex/scholar/url_finder/ScholarURLFinder.py,sha256=C9lpYefs-9YoGcYYYBDB8GrGQyp27LmLTIv_WelDJgI,11840
 scitex/scholar/url_finder/__init__.py,sha256=FV9ocQPE6520WUVVMV2u7hci_-2ha1KLJHzRUUlWGBw,93
+scitex/scholar/url_finder/.tmp/open_url/KNOWN_RESOLVERS.py,sha256=n37aHjOq6YrtgR0DGN0iznKy8EWCjzgBODVm7pINc-w,12926
+scitex/scholar/url_finder/.tmp/open_url/README.md,sha256=4CyiK7Zbdd23WjsYUU7J7FLPmhxwxA1PWc7enL9dGug,6836
+scitex/scholar/url_finder/.tmp/open_url/_DOIToURLResolver.py,sha256=C0cURB6BO78udjjsucqwM_rTxDy5XTaqyuxLBCNbyeU,23632
+scitex/scholar/url_finder/.tmp/open_url/_OpenURLResolver.py,sha256=yigbSuUZ2m6XmDFjhrIdn8Bva5ic7Y-DdwcMCUFlisA,43504
+scitex/scholar/url_finder/.tmp/open_url/_ResolverLinkFinder.py,sha256=s-2HZzAwBp7DxFtpqzEivLbvJ20J1pcBHSDXYmjmJ9A,11869
+scitex/scholar/url_finder/.tmp/open_url/__init__.py,sha256=d1umAnLQNFGYX7oui5Jl8JrjoDpwHkTmHwIiUbPbvBk,571
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 scitex/scholar/url_finder/docs/URL_SCHEMA.md,sha256=MDSUpqJzVwll9Mpspp2RhvYIv6bq_VCTktmTxk_DKk4,7696
 scitex/scholar/url_finder/strategies/__init__.py,sha256=UIfUjfZbFhDZzfEHl3uCuIBUgMEdUMYaC9NbMEDG2Hs,1439
@@ -2576,8 +2551,8 @@ scitex/web/_summarize_url.py,sha256=PpWBk727pjC_yivI_RVNU_RMxjV_jrqlMNaD6kXQAPk,
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 scitex/writer/README.md,sha256=RqUMOJD7wUiQjWoiLSf_hl_Y0IAE3_xPxhlp941zYe4,1299
 scitex/writer/__init__.py,sha256=jQqdIyvQhknySoUAMKreBhAa1KwZ0ieW8SYCppBukts,3301
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-scitex-2.16.1.dist-info/licenses/LICENSE,sha256=TfPDBt3ar0uv_f9cqCDMZ5rIzW3CY8anRRd4PkL6ejs,34522
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scitex/dev/plt/data/mpl/PLOTTING_FUNCTIONS.yaml

@@ -1,90 +0,0 @@
-# Timestamp: "2025-12-21 12:37:14 (ywatanabe)"
-# File: ./src/scitex/dev/plt/data/mpl/PLOTTING_FUNCTIONS.yaml
-
-basic:
-  - plot           # Line/marker plots
-  - scatter        # Scatter plots
-  - bar            # Vertical bar charts
-  - barh           # Horizontal bar charts
-  - stem           # Stem plots
-  - step           # Step plots
-  - fill           # Filled polygons
-  - fill_between   # Fill between y-values
-  - fill_betweenx  # Fill between x-values
-
-statistical:
-  - hist           # Histogram
-  - hist2d         # 2D histogram
-  - boxplot        # Box and whisker plots
-  - bxp            # Box plot from precomputed stats
-  - violinplot     # Violin plots
-  - violin         # Single violin
-  - errorbar       # Error bar plots
-  - pie            # Pie charts
-  - ecdf           # Empirical cumulative distribution
-
-image:
-  - imshow         # Display image/array
-  - matshow        # Display matrix
-  - pcolor         # Pseudocolor plot
-  - pcolormesh     # Pseudocolor mesh (faster)
-  - pcolorfast     # Pseudocolor (fastest)
-  - contour        # Contour lines
-  - contourf       # Filled contours
-  - hexbin         # Hexagonal binning
-  - spy            # Sparsity pattern
-
-vector:
-  - quiver         # Arrow/vector field
-  - streamplot     # Streamlines
-  - barbs          # Wind barbs
-
-spectral:
-  - specgram           # Spectrogram
-  - psd                # Power spectral density
-  - csd                # Cross spectral density
-  - cohere             # Coherence
-  - acorr              # Autocorrelation
-  - xcorr              # Cross-correlation
-  - angle_spectrum     # Phase angle spectrum
-  - magnitude_spectrum # Magnitude spectrum
-  - phase_spectrum     # Phase spectrum
-
-triangulation:
-  - tricontour   # Triangular contour lines
-  - tricontourf  # Triangular filled contours
-  - tripcolor    # Triangular pseudocolor
-  - triplot      # Triangular grid lines
-
-composite:
-  - stackplot    # Stacked area plots
-  - stairs       # Stair/step plots
-  - eventplot    # Event sequence plots
-  - broken_barh  # Broken horizontal bars
-
-log_scale:
-  - loglog       # Log-log scale plot
-  - semilogx     # Semi-log x scale
-  - semilogy     # Semi-log y scale
-
-annotation:
-  - annotate     # Text with arrow annotation
-  - text         # Text at position
-  - arrow        # Arrow patch
-  - axhline      # Horizontal line across axes
-  - axvline      # Vertical line across axes
-  - hlines       # Horizontal lines at y positions
-  - vlines       # Vertical lines at x positions
-  - axhspan      # Horizontal span (shaded region)
-  - axvspan      # Vertical span (shaded region)
-  - axline       # Infinite line
-
-decoration:
-  - legend       # Add legend
-  - grid         # Add grid
-  - table        # Add table
-  - clabel       # Contour labels
-  - bar_label    # Bar chart labels
-  - quiverkey    # Quiver key/legend
-
-# EOF