scipy 1.15.3__cp313-cp313t-macosx_14_0_arm64.whl → 1.16.0rc2__cp313-cp313t-macosx_14_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (627) hide show
  1. scipy/__config__.py +3 -3
  2. scipy/__init__.py +3 -6
  3. scipy/_cyutility.cpython-313t-darwin.so +0 -0
  4. scipy/_lib/_array_api.py +486 -161
  5. scipy/_lib/_array_api_compat_vendor.py +9 -0
  6. scipy/_lib/_bunch.py +4 -0
  7. scipy/_lib/_ccallback_c.cpython-313t-darwin.so +0 -0
  8. scipy/_lib/_docscrape.py +1 -1
  9. scipy/_lib/_elementwise_iterative_method.py +15 -26
  10. scipy/_lib/_sparse.py +41 -0
  11. scipy/_lib/_test_deprecation_call.cpython-313t-darwin.so +0 -0
  12. scipy/_lib/_testutils.py +6 -2
  13. scipy/_lib/_util.py +222 -125
  14. scipy/_lib/array_api_compat/__init__.py +4 -4
  15. scipy/_lib/array_api_compat/_internal.py +19 -6
  16. scipy/_lib/array_api_compat/common/__init__.py +1 -1
  17. scipy/_lib/array_api_compat/common/_aliases.py +365 -193
  18. scipy/_lib/array_api_compat/common/_fft.py +94 -64
  19. scipy/_lib/array_api_compat/common/_helpers.py +413 -180
  20. scipy/_lib/array_api_compat/common/_linalg.py +116 -40
  21. scipy/_lib/array_api_compat/common/_typing.py +179 -10
  22. scipy/_lib/array_api_compat/cupy/__init__.py +1 -4
  23. scipy/_lib/array_api_compat/cupy/_aliases.py +61 -41
  24. scipy/_lib/array_api_compat/cupy/_info.py +16 -6
  25. scipy/_lib/array_api_compat/cupy/_typing.py +24 -39
  26. scipy/_lib/array_api_compat/dask/array/__init__.py +6 -3
  27. scipy/_lib/array_api_compat/dask/array/_aliases.py +267 -108
  28. scipy/_lib/array_api_compat/dask/array/_info.py +105 -34
  29. scipy/_lib/array_api_compat/dask/array/fft.py +5 -8
  30. scipy/_lib/array_api_compat/dask/array/linalg.py +21 -22
  31. scipy/_lib/array_api_compat/numpy/__init__.py +13 -15
  32. scipy/_lib/array_api_compat/numpy/_aliases.py +98 -49
  33. scipy/_lib/array_api_compat/numpy/_info.py +36 -16
  34. scipy/_lib/array_api_compat/numpy/_typing.py +27 -43
  35. scipy/_lib/array_api_compat/numpy/fft.py +11 -5
  36. scipy/_lib/array_api_compat/numpy/linalg.py +75 -22
  37. scipy/_lib/array_api_compat/torch/__init__.py +3 -5
  38. scipy/_lib/array_api_compat/torch/_aliases.py +262 -159
  39. scipy/_lib/array_api_compat/torch/_info.py +27 -16
  40. scipy/_lib/array_api_compat/torch/_typing.py +3 -0
  41. scipy/_lib/array_api_compat/torch/fft.py +17 -18
  42. scipy/_lib/array_api_compat/torch/linalg.py +16 -16
  43. scipy/_lib/array_api_extra/__init__.py +26 -3
  44. scipy/_lib/array_api_extra/_delegation.py +171 -0
  45. scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
  46. scipy/_lib/array_api_extra/_lib/_at.py +463 -0
  47. scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
  48. scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
  49. scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
  50. scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
  51. scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
  52. scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
  53. scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
  54. scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
  55. scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
  56. scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
  57. scipy/_lib/array_api_extra/testing.py +359 -0
  58. scipy/_lib/decorator.py +2 -2
  59. scipy/_lib/doccer.py +1 -7
  60. scipy/_lib/messagestream.cpython-313t-darwin.so +0 -0
  61. scipy/_lib/pyprima/__init__.py +212 -0
  62. scipy/_lib/pyprima/cobyla/__init__.py +0 -0
  63. scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
  64. scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
  65. scipy/_lib/pyprima/cobyla/geometry.py +226 -0
  66. scipy/_lib/pyprima/cobyla/initialize.py +215 -0
  67. scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
  68. scipy/_lib/pyprima/cobyla/update.py +289 -0
  69. scipy/_lib/pyprima/common/__init__.py +0 -0
  70. scipy/_lib/pyprima/common/_bounds.py +34 -0
  71. scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
  72. scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
  73. scipy/_lib/pyprima/common/_project.py +173 -0
  74. scipy/_lib/pyprima/common/checkbreak.py +93 -0
  75. scipy/_lib/pyprima/common/consts.py +47 -0
  76. scipy/_lib/pyprima/common/evaluate.py +99 -0
  77. scipy/_lib/pyprima/common/history.py +38 -0
  78. scipy/_lib/pyprima/common/infos.py +30 -0
  79. scipy/_lib/pyprima/common/linalg.py +435 -0
  80. scipy/_lib/pyprima/common/message.py +290 -0
  81. scipy/_lib/pyprima/common/powalg.py +131 -0
  82. scipy/_lib/pyprima/common/preproc.py +277 -0
  83. scipy/_lib/pyprima/common/present.py +5 -0
  84. scipy/_lib/pyprima/common/ratio.py +54 -0
  85. scipy/_lib/pyprima/common/redrho.py +47 -0
  86. scipy/_lib/pyprima/common/selectx.py +296 -0
  87. scipy/_lib/tests/test__util.py +105 -121
  88. scipy/_lib/tests/test_array_api.py +166 -35
  89. scipy/_lib/tests/test_bunch.py +7 -0
  90. scipy/_lib/tests/test_ccallback.py +2 -10
  91. scipy/_lib/tests/test_public_api.py +13 -0
  92. scipy/cluster/_hierarchy.cpython-313t-darwin.so +0 -0
  93. scipy/cluster/_optimal_leaf_ordering.cpython-313t-darwin.so +0 -0
  94. scipy/cluster/_vq.cpython-313t-darwin.so +0 -0
  95. scipy/cluster/hierarchy.py +393 -223
  96. scipy/cluster/tests/test_hierarchy.py +273 -335
  97. scipy/cluster/tests/test_vq.py +45 -61
  98. scipy/cluster/vq.py +39 -35
  99. scipy/conftest.py +263 -157
  100. scipy/constants/_constants.py +4 -1
  101. scipy/constants/tests/test_codata.py +2 -2
  102. scipy/constants/tests/test_constants.py +11 -18
  103. scipy/datasets/_download_all.py +15 -1
  104. scipy/datasets/_fetchers.py +7 -1
  105. scipy/datasets/_utils.py +1 -1
  106. scipy/differentiate/_differentiate.py +25 -25
  107. scipy/differentiate/tests/test_differentiate.py +24 -25
  108. scipy/fft/_basic.py +20 -0
  109. scipy/fft/_helper.py +3 -34
  110. scipy/fft/_pocketfft/helper.py +29 -1
  111. scipy/fft/_pocketfft/tests/test_basic.py +2 -4
  112. scipy/fft/_pocketfft/tests/test_real_transforms.py +4 -4
  113. scipy/fft/_realtransforms.py +13 -0
  114. scipy/fft/tests/test_basic.py +27 -25
  115. scipy/fft/tests/test_fftlog.py +16 -7
  116. scipy/fft/tests/test_helper.py +18 -34
  117. scipy/fft/tests/test_real_transforms.py +8 -10
  118. scipy/fftpack/convolve.cpython-313t-darwin.so +0 -0
  119. scipy/fftpack/tests/test_basic.py +2 -4
  120. scipy/fftpack/tests/test_real_transforms.py +8 -9
  121. scipy/integrate/_bvp.py +9 -3
  122. scipy/integrate/_cubature.py +3 -2
  123. scipy/integrate/_dop.cpython-313t-darwin.so +0 -0
  124. scipy/integrate/_lsoda.cpython-313t-darwin.so +0 -0
  125. scipy/integrate/_ode.py +9 -2
  126. scipy/integrate/_odepack.cpython-313t-darwin.so +0 -0
  127. scipy/integrate/_quad_vec.py +21 -29
  128. scipy/integrate/_quadpack.cpython-313t-darwin.so +0 -0
  129. scipy/integrate/_quadpack_py.py +11 -7
  130. scipy/integrate/_quadrature.py +3 -3
  131. scipy/integrate/_rules/_base.py +2 -2
  132. scipy/integrate/_tanhsinh.py +48 -47
  133. scipy/integrate/_test_odeint_banded.cpython-313t-darwin.so +0 -0
  134. scipy/integrate/_vode.cpython-313t-darwin.so +0 -0
  135. scipy/integrate/tests/test__quad_vec.py +0 -6
  136. scipy/integrate/tests/test_banded_ode_solvers.py +85 -0
  137. scipy/integrate/tests/test_cubature.py +21 -35
  138. scipy/integrate/tests/test_quadrature.py +6 -8
  139. scipy/integrate/tests/test_tanhsinh.py +56 -48
  140. scipy/interpolate/__init__.py +70 -58
  141. scipy/interpolate/_bary_rational.py +22 -22
  142. scipy/interpolate/_bsplines.py +119 -66
  143. scipy/interpolate/_cubic.py +65 -50
  144. scipy/interpolate/_dfitpack.cpython-313t-darwin.so +0 -0
  145. scipy/interpolate/_dierckx.cpython-313t-darwin.so +0 -0
  146. scipy/interpolate/_fitpack.cpython-313t-darwin.so +0 -0
  147. scipy/interpolate/_fitpack2.py +9 -6
  148. scipy/interpolate/_fitpack_impl.py +32 -26
  149. scipy/interpolate/_fitpack_repro.py +23 -19
  150. scipy/interpolate/_interpnd.cpython-313t-darwin.so +0 -0
  151. scipy/interpolate/_interpolate.py +30 -12
  152. scipy/interpolate/_ndbspline.py +13 -18
  153. scipy/interpolate/_ndgriddata.py +5 -8
  154. scipy/interpolate/_polyint.py +95 -31
  155. scipy/interpolate/_ppoly.cpython-313t-darwin.so +0 -0
  156. scipy/interpolate/_rbf.py +2 -2
  157. scipy/interpolate/_rbfinterp.py +1 -1
  158. scipy/interpolate/_rbfinterp_pythran.cpython-313t-darwin.so +0 -0
  159. scipy/interpolate/_rgi.py +31 -26
  160. scipy/interpolate/_rgi_cython.cpython-313t-darwin.so +0 -0
  161. scipy/interpolate/dfitpack.py +0 -20
  162. scipy/interpolate/interpnd.py +1 -2
  163. scipy/interpolate/tests/test_bary_rational.py +2 -2
  164. scipy/interpolate/tests/test_bsplines.py +97 -1
  165. scipy/interpolate/tests/test_fitpack2.py +39 -1
  166. scipy/interpolate/tests/test_interpnd.py +32 -20
  167. scipy/interpolate/tests/test_interpolate.py +48 -4
  168. scipy/interpolate/tests/test_rgi.py +2 -1
  169. scipy/io/_fast_matrix_market/__init__.py +2 -0
  170. scipy/io/_harwell_boeing/_fortran_format_parser.py +19 -16
  171. scipy/io/_harwell_boeing/hb.py +7 -11
  172. scipy/io/_idl.py +5 -7
  173. scipy/io/_netcdf.py +15 -5
  174. scipy/io/_test_fortran.cpython-313t-darwin.so +0 -0
  175. scipy/io/arff/tests/test_arffread.py +3 -3
  176. scipy/io/matlab/__init__.py +5 -3
  177. scipy/io/matlab/_mio.py +4 -1
  178. scipy/io/matlab/_mio5.py +19 -13
  179. scipy/io/matlab/_mio5_utils.cpython-313t-darwin.so +0 -0
  180. scipy/io/matlab/_mio_utils.cpython-313t-darwin.so +0 -0
  181. scipy/io/matlab/_miobase.py +4 -1
  182. scipy/io/matlab/_streams.cpython-313t-darwin.so +0 -0
  183. scipy/io/matlab/tests/test_mio.py +46 -18
  184. scipy/io/matlab/tests/test_mio_funcs.py +1 -1
  185. scipy/io/tests/test_mmio.py +7 -1
  186. scipy/io/tests/test_wavfile.py +41 -0
  187. scipy/io/wavfile.py +57 -10
  188. scipy/linalg/_basic.py +113 -86
  189. scipy/linalg/_cythonized_array_utils.cpython-313t-darwin.so +0 -0
  190. scipy/linalg/_decomp.py +22 -9
  191. scipy/linalg/_decomp_cholesky.py +28 -13
  192. scipy/linalg/_decomp_cossin.py +45 -30
  193. scipy/linalg/_decomp_interpolative.cpython-313t-darwin.so +0 -0
  194. scipy/linalg/_decomp_ldl.py +4 -1
  195. scipy/linalg/_decomp_lu.py +18 -6
  196. scipy/linalg/_decomp_lu_cython.cpython-313t-darwin.so +0 -0
  197. scipy/linalg/_decomp_polar.py +2 -0
  198. scipy/linalg/_decomp_qr.py +6 -2
  199. scipy/linalg/_decomp_qz.py +3 -0
  200. scipy/linalg/_decomp_schur.py +3 -1
  201. scipy/linalg/_decomp_svd.py +13 -2
  202. scipy/linalg/_decomp_update.cpython-313t-darwin.so +0 -0
  203. scipy/linalg/_expm_frechet.py +4 -0
  204. scipy/linalg/_fblas.cpython-313t-darwin.so +0 -0
  205. scipy/linalg/_flapack.cpython-313t-darwin.so +0 -0
  206. scipy/linalg/_linalg_pythran.cpython-313t-darwin.so +0 -0
  207. scipy/linalg/_matfuncs.py +187 -4
  208. scipy/linalg/_matfuncs_expm.cpython-313t-darwin.so +0 -0
  209. scipy/linalg/_matfuncs_schur_sqrtm.cpython-313t-darwin.so +0 -0
  210. scipy/linalg/_matfuncs_sqrtm.py +1 -99
  211. scipy/linalg/_matfuncs_sqrtm_triu.cpython-313t-darwin.so +0 -0
  212. scipy/linalg/_procrustes.py +2 -0
  213. scipy/linalg/_sketches.py +17 -6
  214. scipy/linalg/_solve_toeplitz.cpython-313t-darwin.so +0 -0
  215. scipy/linalg/_solvers.py +7 -2
  216. scipy/linalg/_special_matrices.py +26 -36
  217. scipy/linalg/cython_blas.cpython-313t-darwin.so +0 -0
  218. scipy/linalg/cython_lapack.cpython-313t-darwin.so +0 -0
  219. scipy/linalg/lapack.py +22 -2
  220. scipy/linalg/tests/_cython_examples/meson.build +7 -0
  221. scipy/linalg/tests/test_basic.py +31 -16
  222. scipy/linalg/tests/test_batch.py +588 -0
  223. scipy/linalg/tests/test_cythonized_array_utils.py +0 -2
  224. scipy/linalg/tests/test_decomp.py +40 -3
  225. scipy/linalg/tests/test_decomp_cossin.py +14 -0
  226. scipy/linalg/tests/test_decomp_ldl.py +1 -1
  227. scipy/linalg/tests/test_lapack.py +115 -7
  228. scipy/linalg/tests/test_matfuncs.py +157 -102
  229. scipy/linalg/tests/test_procrustes.py +0 -7
  230. scipy/linalg/tests/test_solve_toeplitz.py +1 -1
  231. scipy/linalg/tests/test_special_matrices.py +1 -5
  232. scipy/ndimage/__init__.py +1 -0
  233. scipy/ndimage/_cytest.cpython-313t-darwin.so +0 -0
  234. scipy/ndimage/_delegators.py +8 -2
  235. scipy/ndimage/_filters.py +453 -5
  236. scipy/ndimage/_interpolation.py +36 -6
  237. scipy/ndimage/_measurements.py +4 -2
  238. scipy/ndimage/_morphology.py +5 -0
  239. scipy/ndimage/_nd_image.cpython-313t-darwin.so +0 -0
  240. scipy/ndimage/_ni_docstrings.py +5 -1
  241. scipy/ndimage/_ni_label.cpython-313t-darwin.so +0 -0
  242. scipy/ndimage/_ni_support.py +1 -5
  243. scipy/ndimage/_rank_filter_1d.cpython-313t-darwin.so +0 -0
  244. scipy/ndimage/_support_alternative_backends.py +18 -6
  245. scipy/ndimage/tests/test_filters.py +370 -259
  246. scipy/ndimage/tests/test_fourier.py +7 -9
  247. scipy/ndimage/tests/test_interpolation.py +68 -61
  248. scipy/ndimage/tests/test_measurements.py +18 -35
  249. scipy/ndimage/tests/test_morphology.py +143 -131
  250. scipy/ndimage/tests/test_splines.py +1 -3
  251. scipy/odr/__odrpack.cpython-313t-darwin.so +0 -0
  252. scipy/optimize/_basinhopping.py +13 -7
  253. scipy/optimize/_bglu_dense.cpython-313t-darwin.so +0 -0
  254. scipy/optimize/_bracket.py +17 -24
  255. scipy/optimize/_chandrupatla.py +9 -10
  256. scipy/optimize/_cobyla_py.py +104 -123
  257. scipy/optimize/_constraints.py +14 -10
  258. scipy/optimize/_differentiable_functions.py +371 -230
  259. scipy/optimize/_differentialevolution.py +4 -3
  260. scipy/optimize/_direct.cpython-313t-darwin.so +0 -0
  261. scipy/optimize/_dual_annealing.py +1 -1
  262. scipy/optimize/_elementwise.py +1 -4
  263. scipy/optimize/_group_columns.cpython-313t-darwin.so +0 -0
  264. scipy/optimize/_lbfgsb.cpython-313t-darwin.so +0 -0
  265. scipy/optimize/_lbfgsb_py.py +57 -16
  266. scipy/optimize/_linprog_doc.py +2 -2
  267. scipy/optimize/_linprog_highs.py +2 -2
  268. scipy/optimize/_linprog_ip.py +25 -10
  269. scipy/optimize/_linprog_util.py +14 -16
  270. scipy/optimize/_lsap.cpython-313t-darwin.so +0 -0
  271. scipy/optimize/_lsq/common.py +3 -3
  272. scipy/optimize/_lsq/dogbox.py +16 -2
  273. scipy/optimize/_lsq/givens_elimination.cpython-313t-darwin.so +0 -0
  274. scipy/optimize/_lsq/least_squares.py +198 -126
  275. scipy/optimize/_lsq/lsq_linear.py +6 -6
  276. scipy/optimize/_lsq/trf.py +35 -8
  277. scipy/optimize/_milp.py +3 -1
  278. scipy/optimize/_minimize.py +105 -36
  279. scipy/optimize/_minpack.cpython-313t-darwin.so +0 -0
  280. scipy/optimize/_minpack_py.py +21 -14
  281. scipy/optimize/_moduleTNC.cpython-313t-darwin.so +0 -0
  282. scipy/optimize/_nnls.py +20 -21
  283. scipy/optimize/_nonlin.py +34 -3
  284. scipy/optimize/_numdiff.py +288 -110
  285. scipy/optimize/_optimize.py +86 -48
  286. scipy/optimize/_pava_pybind.cpython-313t-darwin.so +0 -0
  287. scipy/optimize/_remove_redundancy.py +5 -5
  288. scipy/optimize/_root_scalar.py +1 -1
  289. scipy/optimize/_shgo.py +6 -0
  290. scipy/optimize/_shgo_lib/_complex.py +1 -1
  291. scipy/optimize/_slsqp_py.py +216 -124
  292. scipy/optimize/_slsqplib.cpython-313t-darwin.so +0 -0
  293. scipy/optimize/_spectral.py +1 -1
  294. scipy/optimize/_tnc.py +8 -1
  295. scipy/optimize/_trlib/_trlib.cpython-313t-darwin.so +0 -0
  296. scipy/optimize/_trustregion.py +20 -6
  297. scipy/optimize/_trustregion_constr/canonical_constraint.py +7 -7
  298. scipy/optimize/_trustregion_constr/equality_constrained_sqp.py +1 -1
  299. scipy/optimize/_trustregion_constr/minimize_trustregion_constr.py +11 -3
  300. scipy/optimize/_trustregion_constr/projections.py +12 -8
  301. scipy/optimize/_trustregion_constr/qp_subproblem.py +9 -9
  302. scipy/optimize/_trustregion_constr/tests/test_projections.py +7 -7
  303. scipy/optimize/_trustregion_constr/tests/test_qp_subproblem.py +77 -77
  304. scipy/optimize/_trustregion_constr/tr_interior_point.py +5 -5
  305. scipy/optimize/_trustregion_exact.py +0 -1
  306. scipy/optimize/_zeros.cpython-313t-darwin.so +0 -0
  307. scipy/optimize/_zeros_py.py +97 -17
  308. scipy/optimize/cython_optimize/_zeros.cpython-313t-darwin.so +0 -0
  309. scipy/optimize/slsqp.py +0 -1
  310. scipy/optimize/tests/test__basinhopping.py +1 -1
  311. scipy/optimize/tests/test__differential_evolution.py +4 -4
  312. scipy/optimize/tests/test__linprog_clean_inputs.py +5 -3
  313. scipy/optimize/tests/test__numdiff.py +66 -22
  314. scipy/optimize/tests/test__remove_redundancy.py +2 -2
  315. scipy/optimize/tests/test__shgo.py +9 -1
  316. scipy/optimize/tests/test_bracket.py +36 -46
  317. scipy/optimize/tests/test_chandrupatla.py +133 -135
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  386. scipy/sparse/_sputils.py +37 -22
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  413. scipy/sparse/linalg/_interface.py +17 -18
  414. scipy/sparse/linalg/_isolve/_gcrotmk.py +4 -4
  415. scipy/sparse/linalg/_isolve/iterative.py +51 -45
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  417. scipy/sparse/linalg/_isolve/minres.py +5 -5
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  436. scipy/spatial/_distance_pybind.cpython-313t-darwin.so +0 -0
  437. scipy/spatial/_distance_wrap.cpython-313t-darwin.so +0 -0
  438. scipy/spatial/_hausdorff.cpython-313t-darwin.so +0 -0
  439. scipy/spatial/_qhull.cpython-313t-darwin.so +0 -0
  440. scipy/spatial/_voronoi.cpython-313t-darwin.so +0 -0
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  443. scipy/spatial/tests/test_kdtree.py +1 -0
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  447. scipy/spatial/transform/_rotation.cpython-313t-darwin.so +0 -0
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  449. scipy/spatial/transform/tests/test_rotation.py +1213 -832
  450. scipy/spatial/transform/tests/test_rotation_groups.py +3 -3
  451. scipy/spatial/transform/tests/test_rotation_spline.py +29 -8
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  455. scipy/special/_comb.cpython-313t-darwin.so +0 -0
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  466. scipy/special/_ufuncs.cpython-313t-darwin.so +0 -0
  467. scipy/special/_ufuncs.pyi +1 -0
  468. scipy/special/_ufuncs.pyx +215 -1400
  469. scipy/special/_ufuncs_cxx.cpython-313t-darwin.so +0 -0
  470. scipy/special/_ufuncs_cxx.pxd +2 -15
  471. scipy/special/_ufuncs_cxx.pyx +5 -44
  472. scipy/special/_ufuncs_cxx_defs.h +2 -16
  473. scipy/special/_ufuncs_defs.h +0 -8
  474. scipy/special/cython_special.cpython-313t-darwin.so +0 -0
  475. scipy/special/cython_special.pxd +1 -1
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  478. scipy/special/tests/test_boost_ufuncs.py +3 -0
  479. scipy/special/tests/test_cdflib.py +35 -11
  480. scipy/special/tests/test_gammainc.py +16 -0
  481. scipy/special/tests/test_hyp2f1.py +2 -2
  482. scipy/special/tests/test_log1mexp.py +85 -0
  483. scipy/special/tests/test_logsumexp.py +206 -64
  484. scipy/special/tests/test_mpmath.py +1 -0
  485. scipy/special/tests/test_nan_inputs.py +1 -1
  486. scipy/special/tests/test_orthogonal.py +17 -18
  487. scipy/special/tests/test_sf_error.py +3 -2
  488. scipy/special/tests/test_sph_harm.py +6 -7
  489. scipy/special/tests/test_support_alternative_backends.py +211 -76
  490. scipy/stats/__init__.py +4 -1
  491. scipy/stats/_ansari_swilk_statistics.cpython-313t-darwin.so +0 -0
  492. scipy/stats/_axis_nan_policy.py +5 -12
  493. scipy/stats/_biasedurn.cpython-313t-darwin.so +0 -0
  494. scipy/stats/_continued_fraction.py +387 -0
  495. scipy/stats/_continuous_distns.py +277 -310
  496. scipy/stats/_correlation.py +1 -1
  497. scipy/stats/_covariance.py +6 -3
  498. scipy/stats/_discrete_distns.py +39 -32
  499. scipy/stats/_distn_infrastructure.py +39 -12
  500. scipy/stats/_distribution_infrastructure.py +900 -238
  501. scipy/stats/_entropy.py +9 -10
  502. scipy/{_lib → stats}/_finite_differences.py +1 -1
  503. scipy/stats/_hypotests.py +83 -50
  504. scipy/stats/_kde.py +53 -49
  505. scipy/stats/_ksstats.py +1 -1
  506. scipy/stats/_levy_stable/__init__.py +7 -15
  507. scipy/stats/_levy_stable/levyst.cpython-313t-darwin.so +0 -0
  508. scipy/stats/_morestats.py +118 -73
  509. scipy/stats/_mstats_basic.py +13 -17
  510. scipy/stats/_mstats_extras.py +8 -8
  511. scipy/stats/_multivariate.py +89 -113
  512. scipy/stats/_new_distributions.py +97 -20
  513. scipy/stats/_page_trend_test.py +12 -5
  514. scipy/stats/_probability_distribution.py +265 -43
  515. scipy/stats/_qmc.py +14 -9
  516. scipy/stats/_qmc_cy.cpython-313t-darwin.so +0 -0
  517. scipy/stats/_qmvnt.py +16 -95
  518. scipy/stats/_qmvnt_cy.cpython-313t-darwin.so +0 -0
  519. scipy/stats/_quantile.py +335 -0
  520. scipy/stats/_rcont/rcont.cpython-313t-darwin.so +0 -0
  521. scipy/stats/_resampling.py +4 -29
  522. scipy/stats/_sampling.py +1 -1
  523. scipy/stats/_sobol.cpython-313t-darwin.so +0 -0
  524. scipy/stats/_stats.cpython-313t-darwin.so +0 -0
  525. scipy/stats/_stats_mstats_common.py +21 -2
  526. scipy/stats/_stats_py.py +550 -476
  527. scipy/stats/_stats_pythran.cpython-313t-darwin.so +0 -0
  528. scipy/stats/_unuran/unuran_wrapper.cpython-313t-darwin.so +0 -0
  529. scipy/stats/_unuran/unuran_wrapper.pyi +2 -1
  530. scipy/stats/_variation.py +6 -8
  531. scipy/stats/_wilcoxon.py +13 -7
  532. scipy/stats/tests/common_tests.py +6 -4
  533. scipy/stats/tests/test_axis_nan_policy.py +62 -24
  534. scipy/stats/tests/test_continued_fraction.py +173 -0
  535. scipy/stats/tests/test_continuous.py +379 -60
  536. scipy/stats/tests/test_continuous_basic.py +18 -12
  537. scipy/stats/tests/test_discrete_basic.py +14 -8
  538. scipy/stats/tests/test_discrete_distns.py +16 -16
  539. scipy/stats/tests/test_distributions.py +95 -75
  540. scipy/stats/tests/test_entropy.py +40 -48
  541. scipy/stats/tests/test_fit.py +4 -3
  542. scipy/stats/tests/test_hypotests.py +153 -24
  543. scipy/stats/tests/test_kdeoth.py +109 -41
  544. scipy/stats/tests/test_marray.py +289 -0
  545. scipy/stats/tests/test_morestats.py +79 -47
  546. scipy/stats/tests/test_mstats_basic.py +3 -3
  547. scipy/stats/tests/test_multivariate.py +434 -83
  548. scipy/stats/tests/test_qmc.py +13 -10
  549. scipy/stats/tests/test_quantile.py +199 -0
  550. scipy/stats/tests/test_rank.py +119 -112
  551. scipy/stats/tests/test_resampling.py +47 -56
  552. scipy/stats/tests/test_sampling.py +9 -4
  553. scipy/stats/tests/test_stats.py +799 -939
  554. scipy/stats/tests/test_variation.py +8 -6
  555. scipy/version.py +2 -2
  556. {scipy-1.15.3.dist-info → scipy-1.16.0rc2.dist-info}/LICENSE.txt +4 -4
  557. {scipy-1.15.3.dist-info → scipy-1.16.0rc2.dist-info}/METADATA +11 -11
  558. {scipy-1.15.3.dist-info → scipy-1.16.0rc2.dist-info}/RECORD +559 -566
  559. scipy-1.16.0rc2.dist-info/WHEEL +6 -0
  560. scipy/_lib/array_api_extra/_funcs.py +0 -484
  561. scipy/_lib/array_api_extra/_typing.py +0 -8
  562. scipy/interpolate/_bspl.cpython-313t-darwin.so +0 -0
  563. scipy/optimize/_cobyla.cpython-313t-darwin.so +0 -0
  564. scipy/optimize/_cython_nnls.cpython-313t-darwin.so +0 -0
  565. scipy/optimize/_slsqp.cpython-313t-darwin.so +0 -0
  566. scipy/spatial/qhull_src/COPYING.txt +0 -38
  567. scipy/special/libsf_error_state.dylib +0 -0
  568. scipy/special/tests/test_log_softmax.py +0 -109
  569. scipy/special/tests/test_xsf_cuda.py +0 -114
  570. scipy/special/xsf/binom.h +0 -89
  571. scipy/special/xsf/cdflib.h +0 -100
  572. scipy/special/xsf/cephes/airy.h +0 -307
  573. scipy/special/xsf/cephes/besselpoly.h +0 -51
  574. scipy/special/xsf/cephes/beta.h +0 -257
  575. scipy/special/xsf/cephes/cbrt.h +0 -131
  576. scipy/special/xsf/cephes/chbevl.h +0 -85
  577. scipy/special/xsf/cephes/chdtr.h +0 -193
  578. scipy/special/xsf/cephes/const.h +0 -87
  579. scipy/special/xsf/cephes/ellie.h +0 -293
  580. scipy/special/xsf/cephes/ellik.h +0 -251
  581. scipy/special/xsf/cephes/ellpe.h +0 -107
  582. scipy/special/xsf/cephes/ellpk.h +0 -117
  583. scipy/special/xsf/cephes/expn.h +0 -260
  584. scipy/special/xsf/cephes/gamma.h +0 -398
  585. scipy/special/xsf/cephes/hyp2f1.h +0 -596
  586. scipy/special/xsf/cephes/hyperg.h +0 -361
  587. scipy/special/xsf/cephes/i0.h +0 -149
  588. scipy/special/xsf/cephes/i1.h +0 -158
  589. scipy/special/xsf/cephes/igam.h +0 -421
  590. scipy/special/xsf/cephes/igam_asymp_coeff.h +0 -195
  591. scipy/special/xsf/cephes/igami.h +0 -313
  592. scipy/special/xsf/cephes/j0.h +0 -225
  593. scipy/special/xsf/cephes/j1.h +0 -198
  594. scipy/special/xsf/cephes/jv.h +0 -715
  595. scipy/special/xsf/cephes/k0.h +0 -164
  596. scipy/special/xsf/cephes/k1.h +0 -163
  597. scipy/special/xsf/cephes/kn.h +0 -243
  598. scipy/special/xsf/cephes/lanczos.h +0 -112
  599. scipy/special/xsf/cephes/ndtr.h +0 -275
  600. scipy/special/xsf/cephes/poch.h +0 -85
  601. scipy/special/xsf/cephes/polevl.h +0 -167
  602. scipy/special/xsf/cephes/psi.h +0 -194
  603. scipy/special/xsf/cephes/rgamma.h +0 -111
  604. scipy/special/xsf/cephes/scipy_iv.h +0 -811
  605. scipy/special/xsf/cephes/shichi.h +0 -248
  606. scipy/special/xsf/cephes/sici.h +0 -224
  607. scipy/special/xsf/cephes/sindg.h +0 -221
  608. scipy/special/xsf/cephes/tandg.h +0 -139
  609. scipy/special/xsf/cephes/trig.h +0 -58
  610. scipy/special/xsf/cephes/unity.h +0 -186
  611. scipy/special/xsf/cephes/zeta.h +0 -172
  612. scipy/special/xsf/config.h +0 -304
  613. scipy/special/xsf/digamma.h +0 -205
  614. scipy/special/xsf/error.h +0 -57
  615. scipy/special/xsf/evalpoly.h +0 -47
  616. scipy/special/xsf/expint.h +0 -266
  617. scipy/special/xsf/hyp2f1.h +0 -694
  618. scipy/special/xsf/iv_ratio.h +0 -173
  619. scipy/special/xsf/lambertw.h +0 -150
  620. scipy/special/xsf/loggamma.h +0 -163
  621. scipy/special/xsf/sici.h +0 -200
  622. scipy/special/xsf/tools.h +0 -427
  623. scipy/special/xsf/trig.h +0 -164
  624. scipy/special/xsf/wright_bessel.h +0 -843
  625. scipy/special/xsf/zlog1.h +0 -35
  626. scipy/stats/_mvn.cpython-313t-darwin.so +0 -0
  627. scipy-1.15.3.dist-info/WHEEL +0 -4
@@ -0,0 +1,93 @@
1
+ '''
2
+ This module checks whether to break out of the solver loop.
3
+
4
+ Translated from Zaikun Zhang's modern-Fortran reference implementation in PRIMA.
5
+
6
+ Dedicated to late Professor M. J. D. Powell FRS (1936--2015).
7
+
8
+ Python translation by Nickolai Belakovski.
9
+ '''
10
+
11
+ from .infos import INFO_DEFAULT, NAN_INF_X, NAN_INF_F, FTARGET_ACHIEVED, MAXFUN_REACHED
12
+
13
+ import numpy as np
14
+
15
+ def checkbreak_unc(maxfun, nf, f, ftarget, x):
16
+ '''
17
+ This module checks whether to break out of the solver loop in the unconstrained case.
18
+ '''
19
+
20
+ # Outputs
21
+ info = INFO_DEFAULT
22
+
23
+ # Local variables
24
+ srname = "CHECKbreak_UNC"
25
+
26
+ # Preconditions
27
+ assert INFO_DEFAULT not in [NAN_INF_X, NAN_INF_F, FTARGET_ACHIEVED, MAXFUN_REACHED], f'NAN_INF_X, NAN_INF_F, FTARGET_ACHIEVED, and MAXFUN_REACHED differ from INFO_DFT {srname}'
28
+ # X does not contain NaN if the initial X does not contain NaN and the subroutines generating
29
+ # trust-region/geometry steps work properly so that they never produce a step containing NaN/Inf.
30
+ assert not any(np.isnan(x)), f'X does not contain NaN {srname}'
31
+ # With the moderated extreme barrier, F cannot be NaN/+Inf.
32
+ assert not (any(np.isnan(f)) or any(np.isposinf(f))), f'F is not NaN/+Inf {srname}'
33
+
34
+ #====================#
35
+ # Calculation starts #
36
+ #====================#
37
+
38
+ # Although X should not contain NaN unless there is a bug, we include the following for security.
39
+ # X can be Inf, as finite + finite can be Inf numerically.
40
+ if any(np.isnan(x)) or any(np.isinf(x)):
41
+ info = NAN_INF_X
42
+
43
+ # Although NAN_INF_F should not happen unless there is a bug, we include the following for security.
44
+ if any(np.isnan(f)) or any(np.isposinf(f)):
45
+ info = NAN_INF_F
46
+
47
+ if f <= ftarget:
48
+ info = FTARGET_ACHIEVED
49
+
50
+ if nf >= maxfun:
51
+ info = MAXFUN_REACHED
52
+
53
+ return info
54
+
55
+ def checkbreak_con(maxfun, nf, cstrv, ctol, f, ftarget, x):
56
+ '''
57
+ This module checks whether to break out of the solver loop in the constrained case.
58
+ '''
59
+
60
+ # Outputs
61
+ info = INFO_DEFAULT
62
+
63
+ # Local variables
64
+ srname = "CHECKbreak_CON"
65
+
66
+ # Preconditions
67
+ assert INFO_DEFAULT not in [NAN_INF_X, NAN_INF_F, FTARGET_ACHIEVED, MAXFUN_REACHED], f'NAN_INF_X, NAN_INF_F, FTARGET_ACHIEVED, and MAXFUN_REACHED differ from INFO_DFT {srname}'
68
+ # X does not contain NaN if the initial X does not contain NaN and the subroutines generating
69
+ # trust-region/geometry steps work properly so that they never produce a step containing NaN/Inf.
70
+ assert not any(np.isnan(x)), f'X does not contain NaN {srname}'
71
+ # With the moderated extreme barrier, F or CSTRV cannot be NaN/+Inf.
72
+ assert not (np.isnan(f) or np.isposinf(f) or np.isnan(cstrv) or np.isposinf(cstrv)), f'F or CSTRV is not NaN/+Inf {srname}'
73
+
74
+ #====================#
75
+ # Calculation starts #
76
+ #====================#
77
+
78
+ # Although X should not contain NaN unless there is a bug, we include the following for security.
79
+ # X can be Inf, as finite + finite can be Inf numerically.
80
+ if any(np.isnan(x)) or any(np.isinf(x)):
81
+ info = NAN_INF_X
82
+
83
+ # Although NAN_INF_F should not happen unless there is a bug, we include the following for security.
84
+ if np.isnan(f) or np.isposinf(f) or np.isnan(cstrv) or np.isposinf(cstrv):
85
+ info = NAN_INF_F
86
+
87
+ if cstrv <= ctol and f <= ftarget:
88
+ info = FTARGET_ACHIEVED
89
+
90
+ if nf >= maxfun:
91
+ info = MAXFUN_REACHED
92
+
93
+ return info
@@ -0,0 +1,47 @@
1
+ '''
2
+ This is a module defining some constants.
3
+
4
+ Translated from Zaikun Zhang's modern-Fortran reference implementation in PRIMA.
5
+
6
+ Dedicated to late Professor M. J. D. Powell FRS (1936--2015).
7
+
8
+ Python translation by Nickolai Belakovski.
9
+ '''
10
+
11
+ import numpy as np
12
+ import os
13
+
14
+ DEBUGGING = bool(os.getenv('PRIMA_DEBUGGING'))
15
+
16
+ REALMIN = np.finfo(float).tiny
17
+ REALMAX = np.finfo(float).max
18
+ FUNCMAX = 10.0**30
19
+ CONSTRMAX = FUNCMAX
20
+ EPS = np.finfo(float).eps
21
+
22
+ # Any bound with an absolute value at least BOUNDMAX is considered as no bound.
23
+ BOUNDMAX = REALMAX/4
24
+
25
+ # Some default values
26
+ RHOBEG_DEFAULT = 1
27
+ RHOEND_DEFAULT = 1e-6
28
+ FTARGET_DEFAULT = -REALMAX
29
+ CTOL_DEFAULT = np.sqrt(EPS)
30
+ CWEIGHT_DEFAULT = 1e8
31
+ ETA1_DEFAULT = 0.1
32
+ ETA2_DEFAULT = 0.7
33
+ GAMMA1_DEFAULT = 0.5
34
+ GAMMA2_DEFAULT = 2
35
+ IPRINT_DEFAULT = 0
36
+ MAXFUN_DIM_DEFAULT = 500
37
+
38
+ PRIMA_MAX_HIST_MEM_MB = 300 # 1MB > 10^5*REAL64. 100 can be too small.
39
+
40
+ # Maximal amount of memory (Byte) allowed for XHIST, FHIST, CONHIST, CHIST, and the filters.
41
+ MHM = PRIMA_MAX_HIST_MEM_MB * 10**6
42
+ # Make sure that MAXHISTMEM does not exceed HUGE(0) to avoid overflow and memory errors.
43
+ MAXHISTMEM = min(MHM, np.iinfo(np.int32).max)
44
+
45
+ # Maximal length of the filter used in constrained solvers.
46
+ MIN_MAXFILT = 200 # Should be positive; < 200 is not recommended.
47
+ MAXFILT_DEFAULT = 10 * MIN_MAXFILT
@@ -0,0 +1,99 @@
1
+ '''
2
+ This is a module evaluating the objective/constraint function with Nan/Inf handling.
3
+
4
+ Translated from Zaikun Zhang's modern-Fortran reference implementation in PRIMA.
5
+
6
+ Dedicated to late Professor M. J. D. Powell FRS (1936--2015).
7
+
8
+ Python translation by Nickolai Belakovski.
9
+ '''
10
+
11
+ import numpy as np
12
+ from .consts import FUNCMAX, CONSTRMAX, REALMAX, DEBUGGING
13
+ from .linalg import matprod, primasum
14
+
15
+ # This is a module evaluating the objective/constraint function with Nan/Inf handling.
16
+
17
+
18
+ def moderatex(x):
19
+ '''
20
+ This function moderates a decision variable. It replaces NaN by 0 and Inf/-Inf by
21
+ REALMAX/-REALMAX.
22
+ '''
23
+ x[np.isnan(x)] = 0
24
+ x = np.clip(x, -REALMAX, REALMAX)
25
+ return x
26
+
27
+ def moderatef(f):
28
+ """
29
+ This function moderates the function value of a MINIMIZATION problem. It replaces
30
+ NaN and any value above FUNCMAX by FUNCMAX.
31
+ """
32
+ f = FUNCMAX if np.isnan(f) else f
33
+ f = np.clip(f, -REALMAX, FUNCMAX)
34
+ # We may moderate huge negative function values as follows, but we decide not to.
35
+ # f = np.clip(f, -FUNCMAX, FUNCMAX)
36
+ return f
37
+
38
+
39
+ def moderatec(c):
40
+ """
41
+ This function moderates the constraint value, the constraint demanding this value
42
+ to be NONNEGATIVE. It replaces any value below -CONSTRMAX by -CONSTRMAX, and any
43
+ NaN or value above CONSTRMAX by CONSTRMAX.
44
+ """
45
+ np.nan_to_num(c, copy=False, nan=CONSTRMAX)
46
+ c = np.clip(c, -CONSTRMAX, CONSTRMAX)
47
+ return c
48
+
49
+
50
+ def evaluate(calcfc, x, m_nlcon, amat, bvec):
51
+ """
52
+ This function evaluates CALCFC at X, returning the objective function value and the
53
+ constraint value. Nan/Inf are handled by a moderated extreme barrier.
54
+ """
55
+
56
+ # Sizes
57
+ m_lcon = len(bvec) if bvec is not None else 0
58
+
59
+ # Preconditions
60
+ if DEBUGGING:
61
+ # X should not contain NaN if the initial X does not contain NaN and the
62
+ # subroutines generating # trust-region/geometry steps work properly so that
63
+ # they never produce a step containing NaN/Inf.
64
+ assert not any(np.isnan(x))
65
+
66
+ #====================#
67
+ # Calculation starts #
68
+ #====================#
69
+
70
+ constr = np.zeros(m_lcon + m_nlcon)
71
+ if amat is not None:
72
+ constr[:m_lcon] = matprod(x, amat.T) - bvec
73
+
74
+ if any(np.isnan(x)):
75
+ # Although this should not happen unless there is a bug, we include this case
76
+ # for robustness.
77
+ f = primasum(x)
78
+ constr = np.ones(m_nlcon) * f
79
+ else:
80
+ f, constr[m_lcon:] = calcfc(moderatex(x))
81
+
82
+ # Moderated extreme barrier: replace NaN/huge objective or constraint values
83
+ # with a large but finite value. This is naive, and better approaches surely
84
+ # exist.
85
+ f = moderatef(f)
86
+ constr[m_lcon:] = moderatec(constr[m_lcon:])
87
+
88
+ #==================#
89
+ # Calculation ends #
90
+ #==================#
91
+
92
+ # Postconditions
93
+ if DEBUGGING:
94
+ # With X not containing NaN, and with the moderated extreme barrier, F cannot
95
+ # be NaN/+Inf, and CONSTR cannot be NaN/-Inf.
96
+ assert not (np.isnan(f) or np.isposinf(f))
97
+ assert not any(np.isnan(constr) | np.isposinf(constr))
98
+
99
+ return f, constr
@@ -0,0 +1,38 @@
1
+ '''
2
+ This module provides subroutines that handle the X/F/C histories of the solver, taking into
3
+ account that MAXHIST may be smaller than NF.
4
+
5
+ Translated from Zaikun Zhang's modern-Fortran reference implementation in PRIMA.
6
+
7
+ Dedicated to late Professor M. J. D. Powell FRS (1936--2015).
8
+
9
+ Python translation by Nickolai Belakovski.
10
+ '''
11
+
12
+ def savehist(maxhist, x, xhist, f, fhist, cstrv, chist, constr, conhist):
13
+ '''
14
+ Save the data values to the history lists.
15
+
16
+ The implementation of this function is vastly different from the Fortran implementation.
17
+ This is mostly due to the ease of creating and appending to lists in Python
18
+
19
+ However just like the Fortran version we should be concerned about both performance
20
+ and memory constraints. It will probably be better to initialize an array of NaN for
21
+ each of the histories and keep track of how many indices we have stored. Not needed for
22
+ the moment.
23
+ '''
24
+ if len(xhist) < maxhist:
25
+ xhist.append(x)
26
+ fhist.append(f)
27
+ chist.append(cstrv)
28
+ conhist.append(constr)
29
+ else:
30
+ # This effectively accomplishes what rangehist does in the Fortran implementation
31
+ xhist.pop(0)
32
+ fhist.pop(0)
33
+ chist.pop(0)
34
+ conhist.pop(0)
35
+ xhist.append(x)
36
+ fhist.append(f)
37
+ chist.append(cstrv)
38
+ conhist.append(constr)
@@ -0,0 +1,30 @@
1
+ '''
2
+ This is a module defining exit flags.
3
+
4
+ Translated from Zaikun Zhang's modern-Fortran reference implementation in PRIMA.
5
+
6
+ Dedicated to late Professor M. J. D. Powell FRS (1936--2015).
7
+
8
+ Python translation by Nickolai Belakovski.
9
+ '''
10
+
11
+ INFO_DEFAULT = 0
12
+ SMALL_TR_RADIUS = 0
13
+ FTARGET_ACHIEVED = 1
14
+ TRSUBP_FAILED = 2
15
+ MAXFUN_REACHED = 3
16
+ MAXTR_REACHED = 20
17
+ NAN_INF_X = -1
18
+ NAN_INF_F = -2
19
+ NAN_INF_MODEL = -3
20
+ NO_SPACE_BETWEEN_BOUNDS = 6
21
+ DAMAGING_ROUNDING = 7
22
+ ZERO_LINEAR_CONSTRAINT = 8
23
+ CALLBACK_TERMINATE = 30
24
+
25
+ # Stop-codes.
26
+ # The following codes are used by ERROR STOP as stop-codes, which should be default integers.
27
+ INVALID_INPUT = 100
28
+ ASSERTION_FAILS = 101
29
+ VALIDATION_FAILS = 102
30
+ MEMORY_ALLOCATION_FAILS = 103