scipion-pyworkflow 3.10.5__py3-none-any.whl → 3.11.0__py3-none-any.whl

pyworkflow/utils/reflection.py

@@ -1,129 +0,0 @@
-# **************************************************************************
-# *
-# * Authors:     J.M. De la Rosa Trevin (jmdelarosa@cnb.csic.es)
-# *
-# * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
-# *
-# * This program is free software; you can redistribute it and/or modify
-# * it under the terms of the GNU General Public License as published by
-# * the Free Software Foundation; either version 3 of the License, or
-# * (at your option) any later version.
-# *
-# * This program is distributed in the hope that it will be useful,
-# * but WITHOUT ANY WARRANTY; without even the implied warranty of
-# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# * GNU General Public License for more details.
-# *
-# * You should have received a copy of the GNU General Public License
-# * along with this program; if not, write to the Free Software
-# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
-# * 02111-1307  USA
-# *
-# *  All comments concerning this program package may be sent to the
-# *  e-mail address 'scipion@cnb.csic.es'
-# *
-# **************************************************************************
-"""
-This module contains reflection utilities
-(dynamically load classes, inspect object properties and others)
-"""
-
-import os
-from os.path import exists, join
-import sys
-from inspect import isclass
-
-
-def getModules(path):
-    """ Try to find possible sub-modules under path.
-    A dictionary will be returned with modules names
-    as keys and the modules objects as values.
-    """
-    sys.path.append(path)
-    folders = os.listdir(path)
-    modules = {}
-
-    for f in folders:
-        if exists(join(path, f, '__init__.py')):
-            try:
-                m = __import__(f)
-                modules[f] = m
-                checkPlugin(m)
-            except Exception as ex:
-                print(">>> Error loading module: '%s'" % f)
-                print(">>> Exception: ", ex)
-                import traceback
-                traceback.print_exc()
-
-    return modules
-
-
-def getSubclassesFromModules(BaseClass, modules, debug=False):
-    """ Find subclasses of BaseClass from a give dict of modules.
-    """
-    subclasses = {}
-
-    for m in modules.values():
-        if debug:
-            print("loading module: ", m.__name__)
-        subDict = getSubclasses(BaseClass, m.__dict__)
-        
-        for subclass in subDict.values():
-            # some protocols have pyworkflow.em.packages. in the __module__ and other no
-            moduleName = subclass.__module__.replace('pwem.packages.', '')
-            if moduleName.startswith(m.__name__):
-                subclass._package = m
-                if debug:
-                    print("  found: ", subclass.__name__, "module: ", subclass.__module__)
-        subclasses.update(subDict)
-
-    return subclasses
-
-
-def getSubclassesFromPath(BaseClass, path):
-    """ Try to find possible sub-packages under path
-    and find subclasses of BaseClass from them
-    Return a dictionary containing the subclasses.
-    """
-    modules = getModules(path)
-    return getSubclassesFromModules(BaseClass, modules)
-
-
-def getSubclasses(BaseClass, inputDict):
-    """ Iterate over inputDict and find all subclasses
-    of BaseClass, that will be set in outputDict.
-    """
-    outputDict = {}
-    for k, v in inputDict.items():
-        # Do not add the base class that is imported in all modules
-        if (not v==BaseClass) and isclass(v) and issubclass(v, BaseClass):
-            outputDict[k] = v
-    return outputDict
-
-
-def checkPlugin(module):
-    if not getattr(module, '_plugin', None):
-        print('WARNING: module "%s" using old package structure, '
-              '_plugin attribute missing' % module.__name__)
-
-
-def isSameFunction(function1, function2):
-    """ Check if the content of 2 functions is the same.
-    This could be used to check if a method has been overridden or not
-    From https://stackoverflow.com/questions/13620542/detecting-empty-function-definitions-in-python"""
-    return function1.__code__.co_code == function2.__code__.co_code
-
-
-def isModuleAFolder(modulename):
-    """ Returns True if a python module is a folder"""
-    # So far e can test for the filename
-    module = sys.modules[modulename]
-
-    return module.__file__.endswith("__init__.py")
-
-
-def isModuleLoaded(modulename):
-    """
-    Return True if a python module is loaded, False otherwise
-    """
-    return modulename in sys.modules