scipion-pyworkflow 3.10.5__py3-none-any.whl → 3.11.0__py3-none-any.whl

pyworkflow/gui/matplotlib_image.py

@@ -1,233 +0,0 @@
-# **************************************************************************
-# *
-# * Authors:     J.M. De la Rosa Trevin (jmdelarosa@cnb.csic.es)
-# *
-# * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
-# *
-# * This program is free software; you can redistribute it and/or modify
-# * it under the terms of the GNU General Public License as published by
-# * the Free Software Foundation; either version 3 of the License, or
-# * (at your option) any later version.
-# *
-# * This program is distributed in the hope that it will be useful,
-# * but WITHOUT ANY WARRANTY; without even the implied warranty of
-# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# * GNU General Public License for more details.
-# *
-# * You should have received a copy of the GNU General Public License
-# * along with this program; if not, write to the Free Software
-# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
-# * 02111-1307  USA
-# *
-# *  All comments concerning this program package may be sent to the
-# *  e-mail address 'scipion@cnb.csic.es'
-# *
-# **************************************************************************
-"""
-Several Image tools using Matplotlib.
-"""
-
-import tkinter as tk
-import matplotlib
-import numpy as np
-import pyworkflow as pw
-from pyworkflow import TK_GRAY_DEFAULT
-
-try:
-    matplotlib.use('TkAgg')
-    from matplotlib.backends.backend_tkagg import FigureCanvasTkAgg
-    import matplotlib.pyplot as plt
-except ImportError:
-    plt = None
-
-from matplotlib.figure import Figure
-import matplotlib.cm as cm
-from matplotlib.patches import Wedge
-import copy
-
-
-class FigureFrame(tk.Frame):
-    """ Create a Tk Frame that will contains a 
-    Matplotlib Figure. 
-    **kwargs arguments will be passed to Figure constructor.
-    Valid options are:
-        figsize = (xdim, ydim)
-        dpi = value
-        frameon = (True|False)
-    """
-    def __init__(self, parent, **kwargs):
-        tk.Frame.__init__(self, parent)
-        self.figure = Figure(**kwargs)
-        self.canvas = FigureCanvasTkAgg(self.figure, master=self)
-        self.canvas.get_tk_widget().grid(column=0, row=0)
-
-    def getFigure(self):
-        return self.figure
-    
-    def getCanvas(self):
-        return self.canvas
-    
-    
-class Preview(tk.Frame):
-    # def __init__(self, parent, dim, dpi=36, label=None):
-    def __init__(self, parent, dim, dpi=36, label=None, col=0, row=0, listenersDict=None):
-        tk.Frame.__init__(self, parent)
-        self.dim = dim
-        self.bg = np.zeros((int(dim), int(dim)), float)
-        ddim = dim/dpi
-        self.figure = Figure(figsize=(ddim, ddim), dpi=dpi, frameon=False)
-        self.canvas = FigureCanvasTkAgg(self.figure, master=self)
-        self.canvas.get_tk_widget().grid(column=0, row=0)  # , sticky=(N, W, E, S))
-        self.canvas.get_tk_widget().config(bg=TK_GRAY_DEFAULT)
-        if label:
-            self.label = tk.Label(self, text=label)
-            self.label.grid(column=0, row=1)
-        self._createAxes()
-
-        if listenersDict is not None:
-            for bindingKey, callback in listenersDict.items():
-                self.canvas.get_tk_widget().bind(bindingKey, callback)
-
-    def setLabel(self, text):
-        self.label.config(text=text)
-
-    def setWindowTitle(self, title):
-        """ Set window title"""
-        self.canvas.set_window_title(title)
-
-    def _createAxes(self):
-        """ Should be implemented in subclasses. """
-        pass
-    
-    def _update(self, *args):
-        """ Should be implemented in subclasses. """
-        pass
-    
-    def clear(self):
-        self._update(self.bg)
-        
-    def updateData(self, Z):
-        self.clear()
-        self._update(Z)
-    
-    
-class ImagePreview(Preview):
-    def __init__(self, parent, dim, dpi=36, label=None, col=0, listenersDict=None):
-        Preview.__init__(self, parent, dim, dpi, label, col, listenersDict=listenersDict)
-            
-    def _createAxes(self):
-        ax = self.figure.add_axes([0, 0, 1, 1], frameon=False)
-        self.figureimg = ax.imshow(self.bg, cmap=cm.gray)  # , extent=[-h, h, -h, h])
-        ax.set_axis_off()
-        self.ax = ax
-        
-    def _update(self, Z, *args):
-        # Adjust the Z shape according to the current data structure.
-        if Z.ndim == 4 and Z.shape[1] == 1:
-            # Assuming that the second dimension is redundant
-            ZAdjusted = Z[:, 0, :, :]
-        else:
-            ZAdjusted = Z
-
-        # If ZAdjusted is a grayscale image (it has only one layer)
-        if ZAdjusted.ndim == 3 and ZAdjusted.shape[0] == 1:
-            ZAdjusted = ZAdjusted[0, :, :]
-
-        # Checks if ZAdjusted has a form compatible with set_data
-        if ZAdjusted.ndim == 2 or (ZAdjusted.ndim == 3 and (ZAdjusted.shape[2] == 3 or ZAdjusted.shape[2] == 4)):
-            self.figureimg.set_data(ZAdjusted)
-            self.figureimg.autoscale()
-            self.figureimg.set(extent=[0, ZAdjusted.shape[1], 0, ZAdjusted.shape[0]])
-            self.canvas.draw()
-
-
-class PsdPreview(Preview):
-    def __init__(self, master, dim, lf, hf, dpi=72, label="PSD", listenersDict=None):
-        Preview.__init__(self, master, dim, dpi, label, listenersDict=listenersDict)
-        self.lf = lf
-        self.hf = hf
-        if self.ring:
-            self.createRing()
-        else:
-            self.canvas.draw()
-                            
-    def _createAxes(self):
-        ax = self.figure.add_axes([0, 0, 1, 1], frameon=False)
-        h = 0.5
-        ax.set_xlim(-h, h)
-        ax.set_ylim(-h, h)
-        ax.tick_params(axis="x", direction="in", pad=-15)
-        ax.tick_params(axis="y", direction="in", pad=-22)
-        ax.grid(True)
-        self.ring = None
-        self.img = ax.imshow(self.bg, cmap=cm.gray, extent=[-h, h, -h, h])
-        self.ax = ax
-        
-    def createRing(self):
-        radius = float(self.hf)
-        width = radius - float(self.lf)
-        styleArgs = getWedgeExtraParams(self.dim / 2)
-        self.ring = Wedge((0, 0), radius, 0, 360, width=width, **styleArgs)  # Full ring
-        self.ax.add_patch(self.ring)
-        self.canvas.draw()
-        
-    def updateFreq(self, lf, hf):
-        self.lf = lf
-        self.hf = hf
-        if self.ring:
-            self.ring.remove()
-            self.ring = None
-        if self.hf:
-            self.createRing()
-    
-    def _update(self, Z):
-        if self.ring:
-            self.ring.remove()
-            self.ring = None
-        if self.hf:
-            self.createRing()
-        self.img.set_data(Z)
-        self.img.autoscale()
-        self.canvas.draw()
-        
-        
-class MaskPreview(ImagePreview):
-    def __init__(self, parent, dim, dpi=36, label=None, col=0, listenersDict=None):
-        ImagePreview.__init__(self, parent, dim, dpi, label, col, listenersDict)
-        self.ring = None
-            
-    def updateMask(self, outerRadius, innerRadius=0):
-        if self.ring is not None:
-            self.ring.remove()
-        center = self.dim / 2
-        width = outerRadius - innerRadius
-        styleArgs = getWedgeExtraParams(center)
-        self.ring = Wedge((center, center), outerRadius, 0, 360, width=width, **styleArgs)  # Full ring
-        self.ax.add_patch(self.ring)
-        self.canvas.draw()
-        
-
-def getPngData(filename):
-    import matplotlib.image as mpimg
-    return mpimg.imread(filename)
-
-
-def createBgImage(dim):
-    return np.ones((dim, dim, 3))
-
-
-def getWedgeExtraParams(maxRad):
-    color = pw.Config.getWizardMaskColor()
-    # Face color
-    fcolor = copy.deepcopy(color)  # Normalized RGB
-    fca = 0.15  # alpha
-    fcolor.append(fca)
-    # Edge color
-    ecolor = copy.deepcopy(color)
-    eca = 1
-    ecolor.append(eca)
-    return {'linewidth': 0.02 * maxRad,  # 2% of the max radius
-            'facecolor': fcolor,
-            'edgecolor': ecolor,
-            'linestyle': '-'}
-

pyworkflow/gui/plotter.py

@@ -1,247 +0,0 @@
-# **************************************************************************
-# *
-# * Authors:     J.M. De la Rosa Trevin (jmdelarosa@cnb.csic.es)
-# *
-# * Unidad de  Bioinformatica of Centro Nacional de Biotecnologia , CSIC
-# *
-# * This program is free software; you can redistribute it and/or modify
-# * it under the terms of the GNU General Public License as published by
-# * the Free Software Foundation; either version 3 of the License, or
-# * (at your option) any later version.
-# *
-# * This program is distributed in the hope that it will be useful,
-# * but WITHOUT ANY WARRANTY; without even the implied warranty of
-# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# * GNU General Public License for more details.
-# *
-# * You should have received a copy of the GNU General Public License
-# * along with this program; if not, write to the Free Software
-# * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA
-# * 02111-1307  USA
-# *
-# *  All comments concerning this program package may be sent to the
-# *  e-mail address 'scipion@cnb.csic.es'
-# *
-# **************************************************************************
-"""
-This module implement the classes to create plots on xmipp.
-"""
-
-try:
-    import matplotlib.pyplot as plt
-except ImportError:
-    plt = None
-
-from pyworkflow.viewer import View
-
-figureCounter = 0
-
-
-class Plotter(View):
-    """ Create different types of plots using the matplotlib library. """
-    backend = None
-    
-    @classmethod
-    def setBackend(cls, value):
-        """ Possible values are:
-        - TkAgg for Tkinter
-        - Agg for non-interactive plots.
-        """
-        plt.switch_backend(value)
-        cls.backend = value
-        
-    def __init__(self, x=1, y=1, mainTitle="", 
-                 figsize=None, dpi=100, windowTitle="",
-                 fontsize=8, **kwargs):
-        """ This Plotter class has some utilities to create a Matplotlib figure
-        and add some plots to it.
-        Params:
-            x, y: number of rows and columns of the grid for plots.
-            mainTitle: figure main title.
-            figsize: the size of the figure, if None, it will be guessed from x and y
-            dpi: resolution, 100 by default.
-            windowTitle: title for the whole windows.
-        """
-        figure = kwargs.get('figure', None)
-
-        if figure == 'active':
-            figure = plt.gcf()
-        
-        if self.backend is None:
-            Plotter.setBackend('Agg')
-
-        plt.style.use(kwargs.get('style', 'default'))
-
-        if figure is None:
-            self.tightLayoutOn = True
-            
-            if figsize is None:  # Set some defaults values
-                if x == 1 and y == 1:
-                    figsize = (6, 5)
-                elif x == 1 and y == 2:
-                    figsize = (4, 6)
-                elif x == 2 and y == 1:
-                    figsize = (6, 4)
-                else:
-                    figsize = (8, 6)
-            
-            # Create grid
-            # import matplotlib.gridspec as gridspec
-            # self.grid = gridspec.GridSpec(x, y)#, height_ratios=[7,4])
-            # self.grid.update(left=0.15, right=0.95, hspace=0.25, wspace=0.4)#, top=0.8, bottom=0.2)
-            global figureCounter
-            figureCounter += 1
-            self.figure = plt.figure(figureCounter, figsize=figsize, dpi=dpi)
-            # from matplotlib.figure import Figure
-            # self.figure = Figure(figsize=figsize, dpi=dpi)
-            if mainTitle:
-                self.figure.suptitle(mainTitle, fontsize=fontsize + 4)
-            if windowTitle:
-                self.figure.canvas.manager.set_window_title(windowTitle)
-            self.plot_count = 0
-            self.last_subplot = None
-            self.plot_yformat = '%1.2e'
-        else:
-            self.figure = figure
-            self.tightLayoutOn = False
-            self.plot_count = 0
-            
-        self.fontsize = fontsize
-        self.plot_title_fontsize = fontsize + 4
-        self.plot_axis_fontsize = fontsize + 2
-        self.plot_text_fontsize = fontsize
-        self.gridx = x
-        self.gridy = y
-            
-    def activate(self):
-        """ Activate this figure. """
-        plt.figure(self.figure.number)
-        
-    def getCanvas(self):
-        return self.figure.canvas
-    
-    def getFigure(self):
-        return self.figure
-    
-    def showLegend(self, labels, loc='best'):
-        leg = self.last_subplot.legend(tuple(labels), loc=loc)
-        for t in leg.get_texts():
-            t.set_fontsize(self.plot_axis_fontsize)    # the legend text fontsize
-
-    def legend(self, loc='best', **kwargs):
-        self.last_subplot.legend(loc=loc, **kwargs)
-
-    def createSubPlot(self, title, xlabel, ylabel, xpos=None, ypos=None,
-                      yformat=False, projection='rectilinear', subtitle=None
-                      ):
-        """
-        Create a subplot in the figure.
-        You should provide plot title, and x and y axis labels.
-        yformat True specified the use of global self.plot_yformat
-        Possible values for projection are:
-            'aitoff', 'hammer', 'lambert', 'mollweide', 'polar', 'rectilinear'
-
-        """
-        if xpos is None:
-            self.plot_count += 1
-            pos = self.plot_count
-        else:
-            pos = xpos + (ypos - 1) * self.gridx
-        a = self.figure.add_subplot(self.gridx, self.gridy, pos, projection=projection)
-        # a.get_label().set_fontsize(12)
-        a.set_title(title, fontsize=self.plot_title_fontsize)
-
-        if subtitle:
-            self.figure.text(0.5, 0.015, subtitle, horizontalalignment="center")
-
-        def setTicksFont(labels):
-            for label in labels:
-                label.set_fontsize(self.plot_text_fontsize)  # Set fontsize
-
-        if xlabel is not None:
-            # Axis setup
-            a.set_xlabel(xlabel, fontsize=self.plot_axis_fontsize)
-            a.xaxis.get_label().set_fontsize(self.plot_axis_fontsize)
-            setTicksFont(a.xaxis.get_ticklabels())
-
-        if ylabel is not None:
-            a.set_ylabel(ylabel, fontsize=self.plot_axis_fontsize)
-
-            if yformat:
-                import matplotlib.ticker as ticker
-                formatter = ticker.FormatStrFormatter(self.plot_yformat)
-                a.yaxis.set_major_formatter(formatter)
-            a.yaxis.get_label().set_fontsize(self.plot_axis_fontsize)
-            setTicksFont(a.yaxis.get_ticklabels())
-
-        if xlabel is None and ylabel is None:
-            a.axis('off')
-
-        self.last_subplot = a
-        self.plot = a.plot
-        self.hist = a.hist
-        self.scatterP = a.scatter
-        self.bar = a.bar
-        return a
-
-    def getLastSubPlot(self):
-        return self.last_subplot
-    
-    def createCanvas(self):
-        a = self.figure.add_subplot(111, axisbg='g')
-        a.set_axis_off()
-        self.figure.set_facecolor('white')
-        return a
-
-    def getColorBar(self, plot):
-        self.tightLayoutOn = False
-        cax = self.figure.add_axes([0.9, 0.1, 0.03, 0.8])
-        cbar = self.figure.colorbar(plot, cax=cax)
-        cbar.set_ticks(cbar.get_ticks())
-        cbar.ax.invert_yaxis()
-
-    def tightLayout(self):
-        if self.tightLayoutOn:
-            self.activate()
-            plt.tight_layout()
-        
-    def show(self, interactive=True, block=False):
-        self.tightLayout()
-        plt.show(block=block)
-
-    def draw(self):
-        self.tightLayout()
-        self.getCanvas().draw()
-        
-    def clear(self):
-        self.getFigure().clear()
-        self.plot_count = 0
-        self.last_subplot = None
-        
-    def savefig(self, *args, **kwargs):
-        self.tightLayout()
-        self.figure.savefig(*args, **kwargs)
-        
-    def isClosed(self):
-        """ Return true if the figure have been closed. """
-        return not plt.fignum_exists(self.figure.number)
-    
-    def close(self):
-        """ Close current Plotter figure. """
-        plt.close(self.figure)
-        
-
-def getHexColorList(numberOfColors, colorName='jet'):
-    """ Returns a list of hexColor """
-    from matplotlib import cm, colors
-    
-    colorsList = []
-    colorMap = cm.get_cmap(colorName)
-    ratio = colorMap.N / numberOfColors
-    for index in range(numberOfColors):
-        colorPosition = int(round((index * ratio)))
-        rgb = colorMap(colorPosition)[:3]
-        rgbColor = colors.rgb2hex(rgb)
-        colorsList.append(rgbColor)
-
-    return colorsList

pyworkflow/gui/project/__init__.py

@@ -1,25 +0,0 @@
-# **************************************************************************
-# *
-# * Authors:     J.M. De la Rosa Trevin (delarosatrevin@scilifelab.se) [1]
-# *
-# * [1] SciLifeLab, Stockholm University
-# *
-# * This program is free software: you can redistribute it and/or modify
-# * it under the terms of the GNU General Public License as published by
-# * the Free Software Foundation, either version 3 of the License, or
-# * (at your option) any later version.
-# *
-# * This program is distributed in the hope that it will be useful,
-# * but WITHOUT ANY WARRANTY; without even the implied warranty of
-# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# * GNU General Public License for more details.
-# *
-# * You should have received a copy of the GNU General Public License
-# * along with this program.  If not, see <https://www.gnu.org/licenses/>.
-# *
-# *  All comments concerning this program package may be sent to the
-# *  e-mail address 'scipion@cnb.csic.es'
-# *
-# **************************************************************************
-
-from .project import ProjectManagerWindow, ProjectWindow

pyworkflow/gui/project/base.py

@@ -1,192 +0,0 @@
-# **************************************************************************
-# *
-# * Authors:     J.M. De la Rosa Trevin (delarosatrevin@scilifelab.se) [1]
-# *
-# * [1] SciLifeLab, Stockholm University
-# *
-# * This program is free software: you can redistribute it and/or modify
-# * it under the terms of the GNU General Public License as published by
-# * the Free Software Foundation, either version 3 of the License, or
-# * (at your option) any later version.
-# *
-# * This program is distributed in the hope that it will be useful,
-# * but WITHOUT ANY WARRANTY; without even the implied warranty of
-# * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# * GNU General Public License for more details.
-# *
-# * You should have received a copy of the GNU General Public License
-# * along with this program.  If not, see <https://www.gnu.org/licenses/>.
-# *
-# *  All comments concerning this program package may be sent to the
-# *  e-mail address 'scipion@cnb.csic.es'
-# *
-# **************************************************************************
-
-
-import os
-import webbrowser
-import tkinter as tk
-
-import pyworkflow as pw
-from pyworkflow.gui import Window, Message, Color, getBigFont, defineStyle, ToolTip
-from pyworkflow.gui.widgets import GradientFrame
-from pyworkflow.utils.properties import Icon
-from pyworkflow.gui.project.variables import VariablesDialog
-
-from .viewprojects import ProjectsView
-from .viewprotocols import ProtocolsView
-from .viewdata import ProjectDataView
-
-VIEW_PROJECTS = Message.VIEW_PROJECTS
-VIEW_PROTOCOLS = Message.VIEW_PROTOCOLS
-VIEW_DATA = Message.VIEW_DATA
-VIEW_LIST = [VIEW_PROTOCOLS, VIEW_DATA]
-
-
-class ProjectBaseWindow(Window):
-    """ Base windows for Project and Manager GUIs.
-    It extends from Window and add some layout functions (header and footer)
-    """
-    def __init__(self, title, masterWindow=None, weight=True,
-                 minsize=(900, 500), icon=Icon.SCIPION_ICON, **kwargs):
-        Window.__init__(self, title, masterWindow, weight=weight, 
-                        icon=icon, minsize=minsize, enableQueue=True, **kwargs)
-        
-        content = tk.Frame(self.root)
-        content.columnconfigure(0, weight=1)
-        content.rowconfigure(1, weight=1)
-        content.grid(row=0, column=0, sticky='news')
-        self.content = content
-
-        defineStyle()
-
-        if getattr(self, 'menuCfg', None):
-            Window.createMainMenu(self, self.menuCfg)
-        
-        self.header = self.createHeaderFrame(content)
-        self.header.grid(row=0, column=0, sticky='new')
-        
-        self.footer = tk.Frame(content, bg=pw.Config.SCIPION_BG_COLOR)
-        self.footer.grid(row=1, column=0, sticky='news') 
-        
-        self.view, self.viewWidget = None, None
-        
-        self.viewFuncs = {VIEW_PROJECTS: ProjectsView,
-                          VIEW_PROTOCOLS: ProtocolsView,
-                          VIEW_DATA: ProjectDataView,
-                          }
-        
-    def createHeaderFrame(self, parent):
-        
-        """ Create the Header frame at the top of the windows.
-        It has (from left to right):
-            - Main application Logo
-            - Project Name
-            - View selection combobox
-        """
-        header = tk.Frame(parent, bg=pw.Config.SCIPION_BG_COLOR)
-        header.columnconfigure(1, weight=1)
-        header.columnconfigure(2, weight=1)
-        # Create the SCIPION logo label
-        logoImg = self.getImage(Icon.SCIPION_LOGO_SMALL)
-        logoLabel = tk.Label(header, image=logoImg, 
-                             borderwidth=0, anchor='nw', bg=pw.Config.SCIPION_BG_COLOR)
-        logoLabel.grid(row=0, column=0, sticky='nw', padx=(5, 0), pady=5)
-        version = "%s - %s (core)" % (os.environ.get('SCIPION_VERSION', ""), pw.LAST_VERSION)
-
-        versionLabel = tk.Label(header, text=version,
-                                bg=pw.Config.SCIPION_BG_COLOR)
-        versionLabel.grid(row=0, column=1, sticky='sw', pady=20)
-        
-        self.customizeheader(header)
-
-        # Create gradient
-        GradientFrame(header, height=8, borderwidth=0).grid(row=1, column=0,
-                                                            columnspan=3,
-                                                            sticky='new')
-        return header
-
-    def customizeheader(self, headerFrame):
-        """ Implement in children classes to customize it: e.g.: Project name in project window"""
-        pass
-
-    def addViewList(self, header):
-        """Create the view selection frame (Protocols|Data) in the header.
-        """
-        # This function is called from createHeaderFrame() in ProjectWindow
-        viewFrame = tk.Frame(header, bg=pw.Config.SCIPION_BG_COLOR)
-        viewFrame.grid(row=0, column=2, sticky='se', padx=5, pady=10)
-
-        def addLink(elementText):
-            btn = tk.Label(viewFrame, text=elementText, cursor='hand2',
-                           fg=pw.Config.SCIPION_MAIN_COLOR, bg=pw.Config.SCIPION_BG_COLOR)
-            btn.bind('<Button-1>', lambda e: self._viewComboSelected(elementText))
-            return btn
-        
-        def addTube():        
-            return tk.Label(viewFrame, text="|", fg=pw.Config.SCIPION_MAIN_COLOR, bg=pw.Config.SCIPION_BG_COLOR, padx=5)
-
-        for i, elementText in enumerate(VIEW_LIST):
-            btn = addLink(elementText)
-            btn.grid(row=0, column=i*2)
-            
-            if i < len(VIEW_LIST)-1:
-                tube = addTube()
-                tube.grid(row=0, column=(i*2)+1)
-    
-    def _viewComboSelected(self, elementText):
-        if elementText != self.view:
-            self.switchView(elementText)
-
-    def switchView(self, newView):
-        # Destroy the previous view if exists:
-        if self.viewWidget:
-            self.viewWidget.grid_forget()
-            self.viewWidget.destroy()
-        # Create the new view
-        self.viewWidget = self.viewFuncs[newView](self.footer, self)
-        # Grid in the second row (1)
-        self.viewWidget.grid(row=0, column=0, columnspan=10, sticky='news')
-        self.footer.rowconfigure(0, weight=1)
-        self.footer.columnconfigure(0, weight=1)
-        self.view = newView
-        
-    def getViewWidget(self):
-        return self.viewWidget
-    #
-    # The next functions are callbacks from the menu options.
-    # See how it is done in pyworkflow/gui/gui.py:Window._addMenuChilds()
-
-    def onExit(self):
-        # Project -> Exit
-        self._onClosing()
-
-    def onOnlineHelp(self):
-        # Help -> Online help
-        webbrowser.open_new("https://scipion-em.github.io/docs/")
-
-    def onAbout(self):
-        # Help -> About
-        self.showInfo(
-            "[[http://scipion.i2pc.es/][Scipion]] is an image processing "
-            "framework to obtain 3D models of macromolecular complexes using "
-            "Electron Microscopy.\n\n"
-            "It integrates several software packages with a unified interface. "
-            "This way you can combine them in a single workflow, while all the "
-            "formats and conversions are taken care of automatically.\n\n"
-            "*Scipion* is developed by a multidisciplinary group of engineers, "
-            "physicists, mathematicians, biologists and computer scientists. "
-            "It is produced mainly by people at the "
-            "[[http://biocomputingunit.es//][CNB Biocomputing Unit]], "
-            "[[https://www2.mrc-lmb.cam.ac.uk/][MRC LMB]], "
-            "but with many contributions across the globe.")
-
-    def onContactSupport(self):
-        # Help -> Contact support
-        email = pw.Config.SCIPION_SUPPORT_EMAIL
-        self.showInfo("Please, do contact us at [[mailto:%s][%s]] for any "
-                      "feedback, bug, idea, anything that will make Scipion "
-                      "better.""" % (email, email))
-
-    def onConfiguration(self):
-        VariablesDialog(self.root)