scikit-network 0.32.1__cp39-cp39-win_amd64.whl → 0.33.0__cp39-cp39-win_amd64.whl
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- {scikit_network-0.32.1.dist-info → scikit_network-0.33.0.dist-info}/AUTHORS.rst +0 -1
- {scikit_network-0.32.1.dist-info → scikit_network-0.33.0.dist-info}/METADATA +9 -3
- {scikit_network-0.32.1.dist-info → scikit_network-0.33.0.dist-info}/RECORD +60 -60
- {scikit_network-0.32.1.dist-info → scikit_network-0.33.0.dist-info}/WHEEL +1 -1
- sknetwork/__init__.py +1 -1
- sknetwork/classification/diffusion.py +4 -3
- sknetwork/classification/knn.py +4 -3
- sknetwork/classification/metrics.py +3 -3
- sknetwork/classification/propagation.py +6 -5
- sknetwork/classification/vote.cp39-win_amd64.pyd +0 -0
- sknetwork/classification/vote.cpp +1 -1
- sknetwork/clustering/leiden.py +2 -1
- sknetwork/clustering/leiden_core.cp39-win_amd64.pyd +0 -0
- sknetwork/clustering/leiden_core.cpp +1 -1
- sknetwork/clustering/louvain.py +3 -3
- sknetwork/clustering/louvain_core.cp39-win_amd64.pyd +0 -0
- sknetwork/clustering/louvain_core.cpp +1 -1
- sknetwork/clustering/tests/test_kcenters.py +5 -37
- sknetwork/data/__init__.py +1 -1
- sknetwork/data/base.py +7 -2
- sknetwork/data/load.py +18 -21
- sknetwork/data/models.py +15 -15
- sknetwork/data/parse.py +19 -17
- sknetwork/data/tests/test_API.py +3 -3
- sknetwork/data/tests/test_base.py +2 -2
- sknetwork/data/tests/test_toy_graphs.py +33 -33
- sknetwork/data/toy_graphs.py +35 -43
- sknetwork/embedding/base.py +3 -0
- sknetwork/embedding/louvain_embedding.py +0 -26
- sknetwork/embedding/svd.py +0 -4
- sknetwork/embedding/tests/test_louvain_embedding.py +9 -4
- sknetwork/embedding/tests/test_svd.py +6 -0
- sknetwork/gnn/gnn_classifier.py +1 -1
- sknetwork/hierarchy/louvain_hierarchy.py +10 -6
- sknetwork/hierarchy/paris.cp39-win_amd64.pyd +0 -0
- sknetwork/hierarchy/paris.cpp +757 -755
- sknetwork/hierarchy/paris.pyx +4 -3
- sknetwork/hierarchy/tests/test_metrics.py +4 -4
- sknetwork/linalg/diteration.cp39-win_amd64.pyd +0 -0
- sknetwork/linalg/diteration.cpp +1 -1
- sknetwork/linalg/push.cp39-win_amd64.pyd +0 -0
- sknetwork/linalg/push.cpp +123 -123
- sknetwork/ranking/betweenness.cp39-win_amd64.pyd +0 -0
- sknetwork/ranking/betweenness.cpp +1 -1
- sknetwork/regression/diffusion.py +6 -4
- sknetwork/topology/cliques.cp39-win_amd64.pyd +0 -0
- sknetwork/topology/cliques.cpp +123 -123
- sknetwork/topology/core.cp39-win_amd64.pyd +0 -0
- sknetwork/topology/core.cpp +123 -123
- sknetwork/topology/minheap.cp39-win_amd64.pyd +0 -0
- sknetwork/topology/minheap.cpp +1 -1
- sknetwork/topology/triangles.cp39-win_amd64.pyd +0 -0
- sknetwork/topology/triangles.cpp +1 -1
- sknetwork/topology/weisfeiler_lehman_core.cp39-win_amd64.pyd +0 -0
- sknetwork/topology/weisfeiler_lehman_core.cpp +1 -1
- sknetwork/utils/__init__.py +1 -1
- sknetwork/utils/values.py +5 -3
- sknetwork/visualization/graphs.py +1 -1
- {scikit_network-0.32.1.dist-info → scikit_network-0.33.0.dist-info}/LICENSE +0 -0
- {scikit_network-0.32.1.dist-info → scikit_network-0.33.0.dist-info}/top_level.txt +0 -0
sknetwork/hierarchy/paris.cpp
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|
1848
1848
|
|
|
1849
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
1849
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":764
|
|
1850
1850
|
*
|
|
1851
1851
|
* ctypedef npy_double float_t
|
|
1852
1852
|
* ctypedef npy_double double_t # <<<<<<<<<<<<<<
|
|
@@ -1855,7 +1855,7 @@ typedef npy_double __pyx_t_5numpy_float_t;
|
|
|
1855
1855
|
*/
|
|
1856
1856
|
typedef npy_double __pyx_t_5numpy_double_t;
|
|
1857
1857
|
|
|
1858
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
1858
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":765
|
|
1859
1859
|
* ctypedef npy_double float_t
|
|
1860
1860
|
* ctypedef npy_double double_t
|
|
1861
1861
|
* ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
|
|
@@ -1897,7 +1897,7 @@ struct __pyx_MemviewEnum_obj;
|
|
|
1897
1897
|
struct __pyx_memoryview_obj;
|
|
1898
1898
|
struct __pyx_memoryviewslice_obj;
|
|
1899
1899
|
|
|
1900
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
1900
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":767
|
|
1901
1901
|
* ctypedef npy_longdouble longdouble_t
|
|
1902
1902
|
*
|
|
1903
1903
|
* ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<<
|
|
@@ -1906,7 +1906,7 @@ struct __pyx_memoryviewslice_obj;
|
|
|
1906
1906
|
*/
|
|
1907
1907
|
typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
|
|
1908
1908
|
|
|
1909
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
1909
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":768
|
|
1910
1910
|
*
|
|
1911
1911
|
* ctypedef npy_cfloat cfloat_t
|
|
1912
1912
|
* ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<<
|
|
@@ -1915,7 +1915,7 @@ typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
|
|
|
1915
1915
|
*/
|
|
1916
1916
|
typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
|
|
1917
1917
|
|
|
1918
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
1918
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":769
|
|
1919
1919
|
* ctypedef npy_cfloat cfloat_t
|
|
1920
1920
|
* ctypedef npy_cdouble cdouble_t
|
|
1921
1921
|
* ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<<
|
|
@@ -1924,7 +1924,7 @@ typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
|
|
|
1924
1924
|
*/
|
|
1925
1925
|
typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;
|
|
1926
1926
|
|
|
1927
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
1927
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":771
|
|
1928
1928
|
* ctypedef npy_clongdouble clongdouble_t
|
|
1929
1929
|
*
|
|
1930
1930
|
* ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<<
|
|
@@ -1935,7 +1935,7 @@ typedef npy_cdouble __pyx_t_5numpy_complex_t;
|
|
|
1935
1935
|
struct __pyx_ctuple_int__and_int;
|
|
1936
1936
|
typedef struct __pyx_ctuple_int__and_int __pyx_ctuple_int__and_int;
|
|
1937
1937
|
|
|
1938
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
1938
|
+
/* "sknetwork/hierarchy/paris.pyx":252
|
|
1939
1939
|
* adjacency.indices, adjacency.indptr)
|
|
1940
1940
|
*
|
|
1941
1941
|
* cdef vector[(int, int)] connected_components # <<<<<<<<<<<<<<
|
|
@@ -3684,7 +3684,7 @@ static const char __pyx_k__7[] = ")";
|
|
|
3684
3684
|
static const char __pyx_k_gc[] = "gc";
|
|
3685
3685
|
static const char __pyx_k_id[] = "id";
|
|
3686
3686
|
static const char __pyx_k_np[] = "np";
|
|
3687
|
-
static const char
|
|
3687
|
+
static const char __pyx_k__37[] = "?";
|
|
3688
3688
|
static const char __pyx_k_abc[] = "abc";
|
|
3689
3689
|
static const char __pyx_k_and[] = " and ";
|
|
3690
3690
|
static const char __pyx_k_any[] = "any";
|
|
@@ -3826,6 +3826,7 @@ static const char __pyx_k_aggregate_graph[] = "aggregate_graph";
|
|
|
3826
3826
|
static const char __pyx_k_allocate_buffer[] = "allocate_buffer";
|
|
3827
3827
|
static const char __pyx_k_collections_abc[] = "collections.abc";
|
|
3828
3828
|
static const char __pyx_k_dtype_is_object[] = "dtype_is_object";
|
|
3829
|
+
static const char __pyx_k_force_bipartite[] = "force_bipartite";
|
|
3829
3830
|
static const char __pyx_k_pyx_PickleError[] = "__pyx_PickleError";
|
|
3830
3831
|
static const char __pyx_k_setstate_cython[] = "__setstate_cython__";
|
|
3831
3832
|
static const char __pyx_k_nearest_neighbor[] = "nearest_neighbor";
|
|
@@ -3944,7 +3945,7 @@ static int __pyx_pf_9sknetwork_9hierarchy_5paris_14AggregateGraph_18cluster_in_w
|
|
|
3944
3945
|
static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_14AggregateGraph_4__reduce_cython__(struct __pyx_obj_9sknetwork_9hierarchy_5paris_AggregateGraph *__pyx_v_self); /* proto */
|
|
3945
3946
|
static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_14AggregateGraph_6__setstate_cython__(struct __pyx_obj_9sknetwork_9hierarchy_5paris_AggregateGraph *__pyx_v_self, PyObject *__pyx_v___pyx_state); /* proto */
|
|
3946
3947
|
static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_weights, PyObject *__pyx_v_reorder); /* proto */
|
|
3947
|
-
static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_input_matrix); /* proto */
|
|
3948
|
+
static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_input_matrix, PyObject *__pyx_v_force_bipartite); /* proto */
|
|
3948
3949
|
static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris___pyx_unpickle_AggregateGraph(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v___pyx_type, long __pyx_v___pyx_checksum, PyObject *__pyx_v___pyx_state); /* proto */
|
|
3949
3950
|
static PyObject *__pyx_tp_new_9sknetwork_9hierarchy_5paris_AggregateGraph(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
|
|
3950
3951
|
static PyObject *__pyx_tp_new_array(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
|
|
@@ -4082,7 +4083,7 @@ typedef struct {
|
|
|
4082
4083
|
PyObject *__pyx_n_s_View_MemoryView;
|
|
4083
4084
|
PyObject *__pyx_kp_u__2;
|
|
4084
4085
|
PyObject *__pyx_n_s__3;
|
|
4085
|
-
PyObject *
|
|
4086
|
+
PyObject *__pyx_n_s__37;
|
|
4086
4087
|
PyObject *__pyx_kp_u__6;
|
|
4087
4088
|
PyObject *__pyx_kp_u__7;
|
|
4088
4089
|
PyObject *__pyx_n_s_abc;
|
|
@@ -4129,6 +4130,7 @@ typedef struct {
|
|
|
4129
4130
|
PyObject *__pyx_n_s_error;
|
|
4130
4131
|
PyObject *__pyx_n_s_fit;
|
|
4131
4132
|
PyObject *__pyx_n_s_flags;
|
|
4133
|
+
PyObject *__pyx_n_s_force_bipartite;
|
|
4132
4134
|
PyObject *__pyx_n_s_format;
|
|
4133
4135
|
PyObject *__pyx_n_s_fortran;
|
|
4134
4136
|
PyObject *__pyx_n_u_fortran;
|
|
@@ -4278,13 +4280,14 @@ typedef struct {
|
|
|
4278
4280
|
PyObject *__pyx_tuple__30;
|
|
4279
4281
|
PyObject *__pyx_tuple__32;
|
|
4280
4282
|
PyObject *__pyx_tuple__33;
|
|
4283
|
+
PyObject *__pyx_tuple__35;
|
|
4281
4284
|
PyObject *__pyx_codeobj__23;
|
|
4282
4285
|
PyObject *__pyx_codeobj__25;
|
|
4283
4286
|
PyObject *__pyx_codeobj__27;
|
|
4284
4287
|
PyObject *__pyx_codeobj__29;
|
|
4285
4288
|
PyObject *__pyx_codeobj__31;
|
|
4286
4289
|
PyObject *__pyx_codeobj__34;
|
|
4287
|
-
PyObject *
|
|
4290
|
+
PyObject *__pyx_codeobj__36;
|
|
4288
4291
|
} __pyx_mstate;
|
|
4289
4292
|
|
|
4290
4293
|
#if CYTHON_USE_MODULE_STATE
|
|
@@ -4402,7 +4405,7 @@ static int __pyx_m_clear(PyObject *m) {
|
|
|
4402
4405
|
Py_CLEAR(clear_module_state->__pyx_n_s_View_MemoryView);
|
|
4403
4406
|
Py_CLEAR(clear_module_state->__pyx_kp_u__2);
|
|
4404
4407
|
Py_CLEAR(clear_module_state->__pyx_n_s__3);
|
|
4405
|
-
Py_CLEAR(clear_module_state->
|
|
4408
|
+
Py_CLEAR(clear_module_state->__pyx_n_s__37);
|
|
4406
4409
|
Py_CLEAR(clear_module_state->__pyx_kp_u__6);
|
|
4407
4410
|
Py_CLEAR(clear_module_state->__pyx_kp_u__7);
|
|
4408
4411
|
Py_CLEAR(clear_module_state->__pyx_n_s_abc);
|
|
@@ -4449,6 +4452,7 @@ static int __pyx_m_clear(PyObject *m) {
|
|
|
4449
4452
|
Py_CLEAR(clear_module_state->__pyx_n_s_error);
|
|
4450
4453
|
Py_CLEAR(clear_module_state->__pyx_n_s_fit);
|
|
4451
4454
|
Py_CLEAR(clear_module_state->__pyx_n_s_flags);
|
|
4455
|
+
Py_CLEAR(clear_module_state->__pyx_n_s_force_bipartite);
|
|
4452
4456
|
Py_CLEAR(clear_module_state->__pyx_n_s_format);
|
|
4453
4457
|
Py_CLEAR(clear_module_state->__pyx_n_s_fortran);
|
|
4454
4458
|
Py_CLEAR(clear_module_state->__pyx_n_u_fortran);
|
|
@@ -4598,13 +4602,14 @@ static int __pyx_m_clear(PyObject *m) {
|
|
|
4598
4602
|
Py_CLEAR(clear_module_state->__pyx_tuple__30);
|
|
4599
4603
|
Py_CLEAR(clear_module_state->__pyx_tuple__32);
|
|
4600
4604
|
Py_CLEAR(clear_module_state->__pyx_tuple__33);
|
|
4605
|
+
Py_CLEAR(clear_module_state->__pyx_tuple__35);
|
|
4601
4606
|
Py_CLEAR(clear_module_state->__pyx_codeobj__23);
|
|
4602
4607
|
Py_CLEAR(clear_module_state->__pyx_codeobj__25);
|
|
4603
4608
|
Py_CLEAR(clear_module_state->__pyx_codeobj__27);
|
|
4604
4609
|
Py_CLEAR(clear_module_state->__pyx_codeobj__29);
|
|
4605
4610
|
Py_CLEAR(clear_module_state->__pyx_codeobj__31);
|
|
4606
4611
|
Py_CLEAR(clear_module_state->__pyx_codeobj__34);
|
|
4607
|
-
Py_CLEAR(clear_module_state->
|
|
4612
|
+
Py_CLEAR(clear_module_state->__pyx_codeobj__36);
|
|
4608
4613
|
return 0;
|
|
4609
4614
|
}
|
|
4610
4615
|
#endif
|
|
@@ -4700,7 +4705,7 @@ static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) {
|
|
|
4700
4705
|
Py_VISIT(traverse_module_state->__pyx_n_s_View_MemoryView);
|
|
4701
4706
|
Py_VISIT(traverse_module_state->__pyx_kp_u__2);
|
|
4702
4707
|
Py_VISIT(traverse_module_state->__pyx_n_s__3);
|
|
4703
|
-
Py_VISIT(traverse_module_state->
|
|
4708
|
+
Py_VISIT(traverse_module_state->__pyx_n_s__37);
|
|
4704
4709
|
Py_VISIT(traverse_module_state->__pyx_kp_u__6);
|
|
4705
4710
|
Py_VISIT(traverse_module_state->__pyx_kp_u__7);
|
|
4706
4711
|
Py_VISIT(traverse_module_state->__pyx_n_s_abc);
|
|
@@ -4747,6 +4752,7 @@ static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) {
|
|
|
4747
4752
|
Py_VISIT(traverse_module_state->__pyx_n_s_error);
|
|
4748
4753
|
Py_VISIT(traverse_module_state->__pyx_n_s_fit);
|
|
4749
4754
|
Py_VISIT(traverse_module_state->__pyx_n_s_flags);
|
|
4755
|
+
Py_VISIT(traverse_module_state->__pyx_n_s_force_bipartite);
|
|
4750
4756
|
Py_VISIT(traverse_module_state->__pyx_n_s_format);
|
|
4751
4757
|
Py_VISIT(traverse_module_state->__pyx_n_s_fortran);
|
|
4752
4758
|
Py_VISIT(traverse_module_state->__pyx_n_u_fortran);
|
|
@@ -4896,13 +4902,14 @@ static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) {
|
|
|
4896
4902
|
Py_VISIT(traverse_module_state->__pyx_tuple__30);
|
|
4897
4903
|
Py_VISIT(traverse_module_state->__pyx_tuple__32);
|
|
4898
4904
|
Py_VISIT(traverse_module_state->__pyx_tuple__33);
|
|
4905
|
+
Py_VISIT(traverse_module_state->__pyx_tuple__35);
|
|
4899
4906
|
Py_VISIT(traverse_module_state->__pyx_codeobj__23);
|
|
4900
4907
|
Py_VISIT(traverse_module_state->__pyx_codeobj__25);
|
|
4901
4908
|
Py_VISIT(traverse_module_state->__pyx_codeobj__27);
|
|
4902
4909
|
Py_VISIT(traverse_module_state->__pyx_codeobj__29);
|
|
4903
4910
|
Py_VISIT(traverse_module_state->__pyx_codeobj__31);
|
|
4904
4911
|
Py_VISIT(traverse_module_state->__pyx_codeobj__34);
|
|
4905
|
-
Py_VISIT(traverse_module_state->
|
|
4912
|
+
Py_VISIT(traverse_module_state->__pyx_codeobj__36);
|
|
4906
4913
|
return 0;
|
|
4907
4914
|
}
|
|
4908
4915
|
#endif
|
|
@@ -5034,7 +5041,7 @@ static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) {
|
|
|
5034
5041
|
#define __pyx_n_s_View_MemoryView __pyx_mstate_global->__pyx_n_s_View_MemoryView
|
|
5035
5042
|
#define __pyx_kp_u__2 __pyx_mstate_global->__pyx_kp_u__2
|
|
5036
5043
|
#define __pyx_n_s__3 __pyx_mstate_global->__pyx_n_s__3
|
|
5037
|
-
#define
|
|
5044
|
+
#define __pyx_n_s__37 __pyx_mstate_global->__pyx_n_s__37
|
|
5038
5045
|
#define __pyx_kp_u__6 __pyx_mstate_global->__pyx_kp_u__6
|
|
5039
5046
|
#define __pyx_kp_u__7 __pyx_mstate_global->__pyx_kp_u__7
|
|
5040
5047
|
#define __pyx_n_s_abc __pyx_mstate_global->__pyx_n_s_abc
|
|
@@ -5081,6 +5088,7 @@ static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) {
|
|
|
5081
5088
|
#define __pyx_n_s_error __pyx_mstate_global->__pyx_n_s_error
|
|
5082
5089
|
#define __pyx_n_s_fit __pyx_mstate_global->__pyx_n_s_fit
|
|
5083
5090
|
#define __pyx_n_s_flags __pyx_mstate_global->__pyx_n_s_flags
|
|
5091
|
+
#define __pyx_n_s_force_bipartite __pyx_mstate_global->__pyx_n_s_force_bipartite
|
|
5084
5092
|
#define __pyx_n_s_format __pyx_mstate_global->__pyx_n_s_format
|
|
5085
5093
|
#define __pyx_n_s_fortran __pyx_mstate_global->__pyx_n_s_fortran
|
|
5086
5094
|
#define __pyx_n_u_fortran __pyx_mstate_global->__pyx_n_u_fortran
|
|
@@ -5230,13 +5238,14 @@ static int __pyx_m_traverse(PyObject *m, visitproc visit, void *arg) {
|
|
|
5230
5238
|
#define __pyx_tuple__30 __pyx_mstate_global->__pyx_tuple__30
|
|
5231
5239
|
#define __pyx_tuple__32 __pyx_mstate_global->__pyx_tuple__32
|
|
5232
5240
|
#define __pyx_tuple__33 __pyx_mstate_global->__pyx_tuple__33
|
|
5241
|
+
#define __pyx_tuple__35 __pyx_mstate_global->__pyx_tuple__35
|
|
5233
5242
|
#define __pyx_codeobj__23 __pyx_mstate_global->__pyx_codeobj__23
|
|
5234
5243
|
#define __pyx_codeobj__25 __pyx_mstate_global->__pyx_codeobj__25
|
|
5235
5244
|
#define __pyx_codeobj__27 __pyx_mstate_global->__pyx_codeobj__27
|
|
5236
5245
|
#define __pyx_codeobj__29 __pyx_mstate_global->__pyx_codeobj__29
|
|
5237
5246
|
#define __pyx_codeobj__31 __pyx_mstate_global->__pyx_codeobj__31
|
|
5238
5247
|
#define __pyx_codeobj__34 __pyx_mstate_global->__pyx_codeobj__34
|
|
5239
|
-
#define
|
|
5248
|
+
#define __pyx_codeobj__36 __pyx_mstate_global->__pyx_codeobj__36
|
|
5240
5249
|
/* #### Code section: module_code ### */
|
|
5241
5250
|
|
|
5242
5251
|
/* "View.MemoryView":131
|
|
@@ -18865,7 +18874,7 @@ static PyObject *__pyx_unpickle_Enum__set_state(struct __pyx_MemviewEnum_obj *__
|
|
|
18865
18874
|
return __pyx_r;
|
|
18866
18875
|
}
|
|
18867
18876
|
|
|
18868
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
18877
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":245
|
|
18869
18878
|
*
|
|
18870
18879
|
* @property
|
|
18871
18880
|
* cdef inline PyObject* base(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -18876,7 +18885,7 @@ static PyObject *__pyx_unpickle_Enum__set_state(struct __pyx_MemviewEnum_obj *__
|
|
|
18876
18885
|
static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject *__pyx_v_self) {
|
|
18877
18886
|
PyObject *__pyx_r;
|
|
18878
18887
|
|
|
18879
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
18888
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":248
|
|
18880
18889
|
* """Returns a borrowed reference to the object owning the data/memory.
|
|
18881
18890
|
* """
|
|
18882
18891
|
* return PyArray_BASE(self) # <<<<<<<<<<<<<<
|
|
@@ -18886,7 +18895,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
18886
18895
|
__pyx_r = PyArray_BASE(__pyx_v_self);
|
|
18887
18896
|
goto __pyx_L0;
|
|
18888
18897
|
|
|
18889
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
18898
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":245
|
|
18890
18899
|
*
|
|
18891
18900
|
* @property
|
|
18892
18901
|
* cdef inline PyObject* base(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -18899,7 +18908,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_7ndarray_4base_base(PyArrayObject
|
|
|
18899
18908
|
return __pyx_r;
|
|
18900
18909
|
}
|
|
18901
18910
|
|
|
18902
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
18911
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":251
|
|
18903
18912
|
*
|
|
18904
18913
|
* @property
|
|
18905
18914
|
* cdef inline dtype descr(self): # <<<<<<<<<<<<<<
|
|
@@ -18913,7 +18922,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
18913
18922
|
PyArray_Descr *__pyx_t_1;
|
|
18914
18923
|
__Pyx_RefNannySetupContext("descr", 1);
|
|
18915
18924
|
|
|
18916
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
18925
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":254
|
|
18917
18926
|
* """Returns an owned reference to the dtype of the array.
|
|
18918
18927
|
* """
|
|
18919
18928
|
* return <dtype>PyArray_DESCR(self) # <<<<<<<<<<<<<<
|
|
@@ -18926,7 +18935,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
18926
18935
|
__pyx_r = ((PyArray_Descr *)__pyx_t_1);
|
|
18927
18936
|
goto __pyx_L0;
|
|
18928
18937
|
|
|
18929
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
18938
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":251
|
|
18930
18939
|
*
|
|
18931
18940
|
* @property
|
|
18932
18941
|
* cdef inline dtype descr(self): # <<<<<<<<<<<<<<
|
|
@@ -18941,7 +18950,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
18941
18950
|
return __pyx_r;
|
|
18942
18951
|
}
|
|
18943
18952
|
|
|
18944
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
18953
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":257
|
|
18945
18954
|
*
|
|
18946
18955
|
* @property
|
|
18947
18956
|
* cdef inline int ndim(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -18952,7 +18961,7 @@ static CYTHON_INLINE PyArray_Descr *__pyx_f_5numpy_7ndarray_5descr_descr(PyArray
|
|
|
18952
18961
|
static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx_v_self) {
|
|
18953
18962
|
int __pyx_r;
|
|
18954
18963
|
|
|
18955
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
18964
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":260
|
|
18956
18965
|
* """Returns the number of dimensions in the array.
|
|
18957
18966
|
* """
|
|
18958
18967
|
* return PyArray_NDIM(self) # <<<<<<<<<<<<<<
|
|
@@ -18962,7 +18971,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
18962
18971
|
__pyx_r = PyArray_NDIM(__pyx_v_self);
|
|
18963
18972
|
goto __pyx_L0;
|
|
18964
18973
|
|
|
18965
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
18974
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":257
|
|
18966
18975
|
*
|
|
18967
18976
|
* @property
|
|
18968
18977
|
* cdef inline int ndim(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -18975,7 +18984,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
18975
18984
|
return __pyx_r;
|
|
18976
18985
|
}
|
|
18977
18986
|
|
|
18978
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
18987
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":263
|
|
18979
18988
|
*
|
|
18980
18989
|
* @property
|
|
18981
18990
|
* cdef inline npy_intp *shape(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -18986,7 +18995,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_7ndarray_4ndim_ndim(PyArrayObject *__pyx
|
|
|
18986
18995
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObject *__pyx_v_self) {
|
|
18987
18996
|
npy_intp *__pyx_r;
|
|
18988
18997
|
|
|
18989
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
18998
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":268
|
|
18990
18999
|
* Can return NULL for 0-dimensional arrays.
|
|
18991
19000
|
* """
|
|
18992
19001
|
* return PyArray_DIMS(self) # <<<<<<<<<<<<<<
|
|
@@ -18996,7 +19005,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
18996
19005
|
__pyx_r = PyArray_DIMS(__pyx_v_self);
|
|
18997
19006
|
goto __pyx_L0;
|
|
18998
19007
|
|
|
18999
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19008
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":263
|
|
19000
19009
|
*
|
|
19001
19010
|
* @property
|
|
19002
19011
|
* cdef inline npy_intp *shape(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -19009,7 +19018,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
19009
19018
|
return __pyx_r;
|
|
19010
19019
|
}
|
|
19011
19020
|
|
|
19012
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19021
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":271
|
|
19013
19022
|
*
|
|
19014
19023
|
* @property
|
|
19015
19024
|
* cdef inline npy_intp *strides(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -19020,7 +19029,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_5shape_shape(PyArrayObjec
|
|
|
19020
19029
|
static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayObject *__pyx_v_self) {
|
|
19021
19030
|
npy_intp *__pyx_r;
|
|
19022
19031
|
|
|
19023
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19032
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":275
|
|
19024
19033
|
* The number of elements matches the number of dimensions of the array (ndim).
|
|
19025
19034
|
* """
|
|
19026
19035
|
* return PyArray_STRIDES(self) # <<<<<<<<<<<<<<
|
|
@@ -19030,7 +19039,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
19030
19039
|
__pyx_r = PyArray_STRIDES(__pyx_v_self);
|
|
19031
19040
|
goto __pyx_L0;
|
|
19032
19041
|
|
|
19033
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19042
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":271
|
|
19034
19043
|
*
|
|
19035
19044
|
* @property
|
|
19036
19045
|
* cdef inline npy_intp *strides(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -19043,7 +19052,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
19043
19052
|
return __pyx_r;
|
|
19044
19053
|
}
|
|
19045
19054
|
|
|
19046
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19055
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":278
|
|
19047
19056
|
*
|
|
19048
19057
|
* @property
|
|
19049
19058
|
* cdef inline npy_intp size(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -19054,7 +19063,7 @@ static CYTHON_INLINE npy_intp *__pyx_f_5numpy_7ndarray_7strides_strides(PyArrayO
|
|
|
19054
19063
|
static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *__pyx_v_self) {
|
|
19055
19064
|
npy_intp __pyx_r;
|
|
19056
19065
|
|
|
19057
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19066
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":281
|
|
19058
19067
|
* """Returns the total size (in number of elements) of the array.
|
|
19059
19068
|
* """
|
|
19060
19069
|
* return PyArray_SIZE(self) # <<<<<<<<<<<<<<
|
|
@@ -19064,7 +19073,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
19064
19073
|
__pyx_r = PyArray_SIZE(__pyx_v_self);
|
|
19065
19074
|
goto __pyx_L0;
|
|
19066
19075
|
|
|
19067
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19076
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":278
|
|
19068
19077
|
*
|
|
19069
19078
|
* @property
|
|
19070
19079
|
* cdef inline npy_intp size(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -19077,7 +19086,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
19077
19086
|
return __pyx_r;
|
|
19078
19087
|
}
|
|
19079
19088
|
|
|
19080
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19089
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":284
|
|
19081
19090
|
*
|
|
19082
19091
|
* @property
|
|
19083
19092
|
* cdef inline char* data(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -19088,7 +19097,7 @@ static CYTHON_INLINE npy_intp __pyx_f_5numpy_7ndarray_4size_size(PyArrayObject *
|
|
|
19088
19097
|
static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__pyx_v_self) {
|
|
19089
19098
|
char *__pyx_r;
|
|
19090
19099
|
|
|
19091
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19100
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":290
|
|
19092
19101
|
* of `PyArray_DATA()` instead, which returns a 'void*'.
|
|
19093
19102
|
* """
|
|
19094
19103
|
* return PyArray_BYTES(self) # <<<<<<<<<<<<<<
|
|
@@ -19098,7 +19107,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
|
|
|
19098
19107
|
__pyx_r = PyArray_BYTES(__pyx_v_self);
|
|
19099
19108
|
goto __pyx_L0;
|
|
19100
19109
|
|
|
19101
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19110
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":284
|
|
19102
19111
|
*
|
|
19103
19112
|
* @property
|
|
19104
19113
|
* cdef inline char* data(self) nogil: # <<<<<<<<<<<<<<
|
|
@@ -19111,7 +19120,7 @@ static CYTHON_INLINE char *__pyx_f_5numpy_7ndarray_4data_data(PyArrayObject *__p
|
|
|
19111
19120
|
return __pyx_r;
|
|
19112
19121
|
}
|
|
19113
19122
|
|
|
19114
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19123
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":773
|
|
19115
19124
|
* ctypedef npy_cdouble complex_t
|
|
19116
19125
|
*
|
|
19117
19126
|
* cdef inline object PyArray_MultiIterNew1(a): # <<<<<<<<<<<<<<
|
|
@@ -19128,7 +19137,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew1(PyObject *__
|
|
|
19128
19137
|
int __pyx_clineno = 0;
|
|
19129
19138
|
__Pyx_RefNannySetupContext("PyArray_MultiIterNew1", 1);
|
|
19130
19139
|
|
|
19131
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19140
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":774
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* cdef inline object PyArray_MultiIterNew1(a):
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* return PyArray_MultiIterNew(1, <void*>a) # <<<<<<<<<<<<<<
|
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|
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|
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* ctypedef npy_cdouble complex_t
|
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*
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|
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|
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* return PyArray_MultiIterNew(1, <void*>a)
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* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
|
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@@ -19178,7 +19187,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
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*
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* cdef inline object PyArray_MultiIterNew2(a, b):
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* return PyArray_MultiIterNew(2, <void*>a, <void*>b) # <<<<<<<<<<<<<<
|
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|
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* return PyArray_MultiIterNew(1, <void*>a)
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|
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|
* cdef inline object PyArray_MultiIterNew2(a, b): # <<<<<<<<<<<<<<
|
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@@ -19211,7 +19220,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew2(PyObject *__
|
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|
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|
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* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
|
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*
|
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* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
|
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@@ -19228,7 +19237,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
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*
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* cdef inline object PyArray_MultiIterNew3(a, b, c):
|
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|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c) # <<<<<<<<<<<<<<
|
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@@ -19242,7 +19251,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":779
|
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* return PyArray_MultiIterNew(2, <void*>a, <void*>b)
|
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|
*
|
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|
* cdef inline object PyArray_MultiIterNew3(a, b, c): # <<<<<<<<<<<<<<
|
|
@@ -19261,7 +19270,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew3(PyObject *__
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":782
|
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|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
|
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|
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|
|
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|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
|
|
@@ -19278,7 +19287,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":783
|
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|
*
|
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|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d):
|
|
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|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d) # <<<<<<<<<<<<<<
|
|
@@ -19292,7 +19301,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":782
|
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|
* return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
|
|
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|
*
|
|
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|
* cdef inline object PyArray_MultiIterNew4(a, b, c, d): # <<<<<<<<<<<<<<
|
|
@@ -19311,7 +19320,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew4(PyObject *__
|
|
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":785
|
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|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
|
|
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|
*
|
|
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|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
|
|
@@ -19328,7 +19337,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":786
|
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|
*
|
|
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|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
|
|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e) # <<<<<<<<<<<<<<
|
|
@@ -19342,7 +19351,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
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|
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|
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":785
|
|
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|
* return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
|
|
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|
*
|
|
19348
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|
* cdef inline object PyArray_MultiIterNew5(a, b, c, d, e): # <<<<<<<<<<<<<<
|
|
@@ -19361,7 +19370,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyArray_MultiIterNew5(PyObject *__
|
|
|
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|
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|
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|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":788
|
|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
|
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19375
|
*
|
|
19367
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|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -19375,7 +19384,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
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|
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|
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|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":789
|
|
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|
*
|
|
19380
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
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|
* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -19385,7 +19394,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
__pyx_t_1 = PyDataType_HASSUBARRAY(__pyx_v_d);
|
|
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|
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|
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":790
|
|
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
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|
* if PyDataType_HASSUBARRAY(d):
|
|
19391
19400
|
* return <tuple>d.subarray.shape # <<<<<<<<<<<<<<
|
|
@@ -19397,7 +19406,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
__pyx_r = ((PyObject*)__pyx_v_d->subarray->shape);
|
|
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|
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|
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":789
|
|
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|
*
|
|
19402
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|
* cdef inline tuple PyDataType_SHAPE(dtype d):
|
|
19403
19412
|
* if PyDataType_HASSUBARRAY(d): # <<<<<<<<<<<<<<
|
|
@@ -19406,7 +19415,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
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|
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|
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+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":792
|
|
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|
* return <tuple>d.subarray.shape
|
|
19411
19420
|
* else:
|
|
19412
19421
|
* return () # <<<<<<<<<<<<<<
|
|
@@ -19420,7 +19429,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
goto __pyx_L0;
|
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|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":788
|
|
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|
* return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
|
|
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19434
|
*
|
|
19426
19435
|
* cdef inline tuple PyDataType_SHAPE(dtype d): # <<<<<<<<<<<<<<
|
|
@@ -19435,7 +19444,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_PyDataType_SHAPE(PyArray_Descr *__
|
|
|
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|
return __pyx_r;
|
|
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|
}
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|
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|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":968
|
|
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|
* int _import_umath() except -1
|
|
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|
*
|
|
19441
19450
|
* cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<<
|
|
@@ -19449,7 +19458,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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|
const char *__pyx_filename = NULL;
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":969
|
|
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19462
|
*
|
|
19454
19463
|
* cdef inline void set_array_base(ndarray arr, object base):
|
|
19455
19464
|
* Py_INCREF(base) # important to do this before stealing the reference below! # <<<<<<<<<<<<<<
|
|
@@ -19458,7 +19467,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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|
*/
|
|
19459
19468
|
Py_INCREF(__pyx_v_base);
|
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|
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|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":970
|
|
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19471
|
* cdef inline void set_array_base(ndarray arr, object base):
|
|
19463
19472
|
* Py_INCREF(base) # important to do this before stealing the reference below!
|
|
19464
19473
|
* PyArray_SetBaseObject(arr, base) # <<<<<<<<<<<<<<
|
|
@@ -19467,7 +19476,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
19467
19476
|
*/
|
|
19468
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|
__pyx_t_1 = PyArray_SetBaseObject(__pyx_v_arr, __pyx_v_base); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(2, 970, __pyx_L1_error)
|
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":968
|
|
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19480
|
* int _import_umath() except -1
|
|
19472
19481
|
*
|
|
19473
19482
|
* cdef inline void set_array_base(ndarray arr, object base): # <<<<<<<<<<<<<<
|
|
@@ -19482,7 +19491,7 @@ static CYTHON_INLINE void __pyx_f_5numpy_set_array_base(PyArrayObject *__pyx_v_a
|
|
|
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19491
|
__pyx_L0:;
|
|
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19492
|
}
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":972
|
|
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|
* PyArray_SetBaseObject(arr, base)
|
|
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19496
|
*
|
|
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19497
|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -19497,7 +19506,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
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19506
|
int __pyx_t_1;
|
|
19498
19507
|
__Pyx_RefNannySetupContext("get_array_base", 1);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":973
|
|
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|
*
|
|
19502
19511
|
* cdef inline object get_array_base(ndarray arr):
|
|
19503
19512
|
* base = PyArray_BASE(arr) # <<<<<<<<<<<<<<
|
|
@@ -19506,7 +19515,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
19506
19515
|
*/
|
|
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|
__pyx_v_base = PyArray_BASE(__pyx_v_arr);
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":974
|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
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19520
|
* base = PyArray_BASE(arr)
|
|
19512
19521
|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -19516,7 +19525,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
19516
19525
|
__pyx_t_1 = (__pyx_v_base == NULL);
|
|
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19526
|
if (__pyx_t_1) {
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":975
|
|
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|
* base = PyArray_BASE(arr)
|
|
19521
19530
|
* if base is NULL:
|
|
19522
19531
|
* return None # <<<<<<<<<<<<<<
|
|
@@ -19527,7 +19536,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
19527
19536
|
__pyx_r = Py_None; __Pyx_INCREF(Py_None);
|
|
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19537
|
goto __pyx_L0;
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":974
|
|
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|
* cdef inline object get_array_base(ndarray arr):
|
|
19532
19541
|
* base = PyArray_BASE(arr)
|
|
19533
19542
|
* if base is NULL: # <<<<<<<<<<<<<<
|
|
@@ -19536,7 +19545,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
19536
19545
|
*/
|
|
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19546
|
}
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":976
|
|
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19549
|
* if base is NULL:
|
|
19541
19550
|
* return None
|
|
19542
19551
|
* return <object>base # <<<<<<<<<<<<<<
|
|
@@ -19548,7 +19557,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
19548
19557
|
__pyx_r = ((PyObject *)__pyx_v_base);
|
|
19549
19558
|
goto __pyx_L0;
|
|
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19559
|
|
|
19551
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19560
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":972
|
|
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19561
|
* PyArray_SetBaseObject(arr, base)
|
|
19553
19562
|
*
|
|
19554
19563
|
* cdef inline object get_array_base(ndarray arr): # <<<<<<<<<<<<<<
|
|
@@ -19563,7 +19572,7 @@ static CYTHON_INLINE PyObject *__pyx_f_5numpy_get_array_base(PyArrayObject *__py
|
|
|
19563
19572
|
return __pyx_r;
|
|
19564
19573
|
}
|
|
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19574
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":980
|
|
19567
19576
|
* # Versions of the import_* functions which are more suitable for
|
|
19568
19577
|
* # Cython code.
|
|
19569
19578
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -19587,7 +19596,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
19587
19596
|
int __pyx_clineno = 0;
|
|
19588
19597
|
__Pyx_RefNannySetupContext("import_array", 1);
|
|
19589
19598
|
|
|
19590
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":981
|
|
19591
19600
|
* # Cython code.
|
|
19592
19601
|
* cdef inline int import_array() except -1:
|
|
19593
19602
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -19603,7 +19612,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
19603
19612
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
19604
19613
|
/*try:*/ {
|
|
19605
19614
|
|
|
19606
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19615
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":982
|
|
19607
19616
|
* cdef inline int import_array() except -1:
|
|
19608
19617
|
* try:
|
|
19609
19618
|
* __pyx_import_array() # <<<<<<<<<<<<<<
|
|
@@ -19612,7 +19621,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
19612
19621
|
*/
|
|
19613
19622
|
__pyx_t_4 = _import_array(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(2, 982, __pyx_L3_error)
|
|
19614
19623
|
|
|
19615
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19624
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":981
|
|
19616
19625
|
* # Cython code.
|
|
19617
19626
|
* cdef inline int import_array() except -1:
|
|
19618
19627
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -19626,7 +19635,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
19626
19635
|
goto __pyx_L8_try_end;
|
|
19627
19636
|
__pyx_L3_error:;
|
|
19628
19637
|
|
|
19629
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19638
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":983
|
|
19630
19639
|
* try:
|
|
19631
19640
|
* __pyx_import_array()
|
|
19632
19641
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -19641,7 +19650,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
19641
19650
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
19642
19651
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
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19652
|
|
|
19644
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19653
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":984
|
|
19645
19654
|
* __pyx_import_array()
|
|
19646
19655
|
* except Exception:
|
|
19647
19656
|
* raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<<
|
|
@@ -19656,7 +19665,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
19656
19665
|
}
|
|
19657
19666
|
goto __pyx_L5_except_error;
|
|
19658
19667
|
|
|
19659
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19668
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":981
|
|
19660
19669
|
* # Cython code.
|
|
19661
19670
|
* cdef inline int import_array() except -1:
|
|
19662
19671
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -19672,7 +19681,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
19672
19681
|
__pyx_L8_try_end:;
|
|
19673
19682
|
}
|
|
19674
19683
|
|
|
19675
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19684
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":980
|
|
19676
19685
|
* # Versions of the import_* functions which are more suitable for
|
|
19677
19686
|
* # Cython code.
|
|
19678
19687
|
* cdef inline int import_array() except -1: # <<<<<<<<<<<<<<
|
|
@@ -19695,7 +19704,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_array(void) {
|
|
|
19695
19704
|
return __pyx_r;
|
|
19696
19705
|
}
|
|
19697
19706
|
|
|
19698
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19707
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":986
|
|
19699
19708
|
* raise ImportError("numpy.core.multiarray failed to import")
|
|
19700
19709
|
*
|
|
19701
19710
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -19719,7 +19728,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
19719
19728
|
int __pyx_clineno = 0;
|
|
19720
19729
|
__Pyx_RefNannySetupContext("import_umath", 1);
|
|
19721
19730
|
|
|
19722
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19731
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":987
|
|
19723
19732
|
*
|
|
19724
19733
|
* cdef inline int import_umath() except -1:
|
|
19725
19734
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -19735,7 +19744,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
19735
19744
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
19736
19745
|
/*try:*/ {
|
|
19737
19746
|
|
|
19738
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19747
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":988
|
|
19739
19748
|
* cdef inline int import_umath() except -1:
|
|
19740
19749
|
* try:
|
|
19741
19750
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -19744,7 +19753,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
19744
19753
|
*/
|
|
19745
19754
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(2, 988, __pyx_L3_error)
|
|
19746
19755
|
|
|
19747
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19756
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":987
|
|
19748
19757
|
*
|
|
19749
19758
|
* cdef inline int import_umath() except -1:
|
|
19750
19759
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -19758,7 +19767,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
19758
19767
|
goto __pyx_L8_try_end;
|
|
19759
19768
|
__pyx_L3_error:;
|
|
19760
19769
|
|
|
19761
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19770
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":989
|
|
19762
19771
|
* try:
|
|
19763
19772
|
* _import_umath()
|
|
19764
19773
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -19773,7 +19782,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
19773
19782
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
19774
19783
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
19775
19784
|
|
|
19776
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19785
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":990
|
|
19777
19786
|
* _import_umath()
|
|
19778
19787
|
* except Exception:
|
|
19779
19788
|
* raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -19788,7 +19797,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
19788
19797
|
}
|
|
19789
19798
|
goto __pyx_L5_except_error;
|
|
19790
19799
|
|
|
19791
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19800
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":987
|
|
19792
19801
|
*
|
|
19793
19802
|
* cdef inline int import_umath() except -1:
|
|
19794
19803
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -19804,7 +19813,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
19804
19813
|
__pyx_L8_try_end:;
|
|
19805
19814
|
}
|
|
19806
19815
|
|
|
19807
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19816
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":986
|
|
19808
19817
|
* raise ImportError("numpy.core.multiarray failed to import")
|
|
19809
19818
|
*
|
|
19810
19819
|
* cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
|
|
@@ -19827,7 +19836,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
|
|
|
19827
19836
|
return __pyx_r;
|
|
19828
19837
|
}
|
|
19829
19838
|
|
|
19830
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19839
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":992
|
|
19831
19840
|
* raise ImportError("numpy.core.umath failed to import")
|
|
19832
19841
|
*
|
|
19833
19842
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -19851,7 +19860,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
19851
19860
|
int __pyx_clineno = 0;
|
|
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19861
|
__Pyx_RefNannySetupContext("import_ufunc", 1);
|
|
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19862
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":993
|
|
19855
19864
|
*
|
|
19856
19865
|
* cdef inline int import_ufunc() except -1:
|
|
19857
19866
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -19867,7 +19876,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
19867
19876
|
__Pyx_XGOTREF(__pyx_t_3);
|
|
19868
19877
|
/*try:*/ {
|
|
19869
19878
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":994
|
|
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19880
|
* cdef inline int import_ufunc() except -1:
|
|
19872
19881
|
* try:
|
|
19873
19882
|
* _import_umath() # <<<<<<<<<<<<<<
|
|
@@ -19876,7 +19885,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
19876
19885
|
*/
|
|
19877
19886
|
__pyx_t_4 = _import_umath(); if (unlikely(__pyx_t_4 == ((int)-1))) __PYX_ERR(2, 994, __pyx_L3_error)
|
|
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19887
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":993
|
|
19880
19889
|
*
|
|
19881
19890
|
* cdef inline int import_ufunc() except -1:
|
|
19882
19891
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -19890,7 +19899,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
19890
19899
|
goto __pyx_L8_try_end;
|
|
19891
19900
|
__pyx_L3_error:;
|
|
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19901
|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":995
|
|
19894
19903
|
* try:
|
|
19895
19904
|
* _import_umath()
|
|
19896
19905
|
* except Exception: # <<<<<<<<<<<<<<
|
|
@@ -19905,7 +19914,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
19905
19914
|
__Pyx_XGOTREF(__pyx_t_6);
|
|
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19915
|
__Pyx_XGOTREF(__pyx_t_7);
|
|
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|
|
|
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|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":996
|
|
19909
19918
|
* _import_umath()
|
|
19910
19919
|
* except Exception:
|
|
19911
19920
|
* raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
|
|
@@ -19920,7 +19929,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
19920
19929
|
}
|
|
19921
19930
|
goto __pyx_L5_except_error;
|
|
19922
19931
|
|
|
19923
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
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|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":993
|
|
19924
19933
|
*
|
|
19925
19934
|
* cdef inline int import_ufunc() except -1:
|
|
19926
19935
|
* try: # <<<<<<<<<<<<<<
|
|
@@ -19936,7 +19945,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
19936
19945
|
__pyx_L8_try_end:;
|
|
19937
19946
|
}
|
|
19938
19947
|
|
|
19939
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19948
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":992
|
|
19940
19949
|
* raise ImportError("numpy.core.umath failed to import")
|
|
19941
19950
|
*
|
|
19942
19951
|
* cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
|
|
@@ -19959,7 +19968,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
19959
19968
|
return __pyx_r;
|
|
19960
19969
|
}
|
|
19961
19970
|
|
|
19962
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19971
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":999
|
|
19963
19972
|
*
|
|
19964
19973
|
*
|
|
19965
19974
|
* cdef inline bint is_timedelta64_object(object obj): # <<<<<<<<<<<<<<
|
|
@@ -19970,7 +19979,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_import_ufunc(void) {
|
|
|
19970
19979
|
static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_obj) {
|
|
19971
19980
|
int __pyx_r;
|
|
19972
19981
|
|
|
19973
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19982
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1011
|
|
19974
19983
|
* bool
|
|
19975
19984
|
* """
|
|
19976
19985
|
* return PyObject_TypeCheck(obj, &PyTimedeltaArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -19980,7 +19989,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
19980
19989
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyTimedeltaArrType_Type));
|
|
19981
19990
|
goto __pyx_L0;
|
|
19982
19991
|
|
|
19983
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
19992
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":999
|
|
19984
19993
|
*
|
|
19985
19994
|
*
|
|
19986
19995
|
* cdef inline bint is_timedelta64_object(object obj): # <<<<<<<<<<<<<<
|
|
@@ -19993,7 +20002,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
19993
20002
|
return __pyx_r;
|
|
19994
20003
|
}
|
|
19995
20004
|
|
|
19996
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20005
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1014
|
|
19997
20006
|
*
|
|
19998
20007
|
*
|
|
19999
20008
|
* cdef inline bint is_datetime64_object(object obj): # <<<<<<<<<<<<<<
|
|
@@ -20004,7 +20013,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_timedelta64_object(PyObject *__pyx_v_
|
|
|
20004
20013
|
static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_obj) {
|
|
20005
20014
|
int __pyx_r;
|
|
20006
20015
|
|
|
20007
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20016
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1026
|
|
20008
20017
|
* bool
|
|
20009
20018
|
* """
|
|
20010
20019
|
* return PyObject_TypeCheck(obj, &PyDatetimeArrType_Type) # <<<<<<<<<<<<<<
|
|
@@ -20014,7 +20023,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
20014
20023
|
__pyx_r = PyObject_TypeCheck(__pyx_v_obj, (&PyDatetimeArrType_Type));
|
|
20015
20024
|
goto __pyx_L0;
|
|
20016
20025
|
|
|
20017
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20026
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1014
|
|
20018
20027
|
*
|
|
20019
20028
|
*
|
|
20020
20029
|
* cdef inline bint is_datetime64_object(object obj): # <<<<<<<<<<<<<<
|
|
@@ -20027,7 +20036,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
20027
20036
|
return __pyx_r;
|
|
20028
20037
|
}
|
|
20029
20038
|
|
|
20030
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20039
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1029
|
|
20031
20040
|
*
|
|
20032
20041
|
*
|
|
20033
20042
|
* cdef inline npy_datetime get_datetime64_value(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -20038,7 +20047,7 @@ static CYTHON_INLINE int __pyx_f_5numpy_is_datetime64_object(PyObject *__pyx_v_o
|
|
|
20038
20047
|
static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *__pyx_v_obj) {
|
|
20039
20048
|
npy_datetime __pyx_r;
|
|
20040
20049
|
|
|
20041
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20050
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1036
|
|
20042
20051
|
* also needed. That can be found using `get_datetime64_unit`.
|
|
20043
20052
|
* """
|
|
20044
20053
|
* return (<PyDatetimeScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -20048,7 +20057,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
20048
20057
|
__pyx_r = ((PyDatetimeScalarObject *)__pyx_v_obj)->obval;
|
|
20049
20058
|
goto __pyx_L0;
|
|
20050
20059
|
|
|
20051
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20060
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1029
|
|
20052
20061
|
*
|
|
20053
20062
|
*
|
|
20054
20063
|
* cdef inline npy_datetime get_datetime64_value(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -20061,7 +20070,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
20061
20070
|
return __pyx_r;
|
|
20062
20071
|
}
|
|
20063
20072
|
|
|
20064
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20073
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1039
|
|
20065
20074
|
*
|
|
20066
20075
|
*
|
|
20067
20076
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -20072,7 +20081,7 @@ static CYTHON_INLINE npy_datetime __pyx_f_5numpy_get_datetime64_value(PyObject *
|
|
|
20072
20081
|
static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject *__pyx_v_obj) {
|
|
20073
20082
|
npy_timedelta __pyx_r;
|
|
20074
20083
|
|
|
20075
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20084
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1043
|
|
20076
20085
|
* returns the int64 value underlying scalar numpy timedelta64 object
|
|
20077
20086
|
* """
|
|
20078
20087
|
* return (<PyTimedeltaScalarObject*>obj).obval # <<<<<<<<<<<<<<
|
|
@@ -20082,7 +20091,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
20082
20091
|
__pyx_r = ((PyTimedeltaScalarObject *)__pyx_v_obj)->obval;
|
|
20083
20092
|
goto __pyx_L0;
|
|
20084
20093
|
|
|
20085
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20094
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1039
|
|
20086
20095
|
*
|
|
20087
20096
|
*
|
|
20088
20097
|
* cdef inline npy_timedelta get_timedelta64_value(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -20095,7 +20104,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
20095
20104
|
return __pyx_r;
|
|
20096
20105
|
}
|
|
20097
20106
|
|
|
20098
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20107
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1046
|
|
20099
20108
|
*
|
|
20100
20109
|
*
|
|
20101
20110
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -20106,7 +20115,7 @@ static CYTHON_INLINE npy_timedelta __pyx_f_5numpy_get_timedelta64_value(PyObject
|
|
|
20106
20115
|
static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObject *__pyx_v_obj) {
|
|
20107
20116
|
NPY_DATETIMEUNIT __pyx_r;
|
|
20108
20117
|
|
|
20109
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20118
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1050
|
|
20110
20119
|
* returns the unit part of the dtype for a numpy datetime64 object.
|
|
20111
20120
|
* """
|
|
20112
20121
|
* return <NPY_DATETIMEUNIT>(<PyDatetimeScalarObject*>obj).obmeta.base # <<<<<<<<<<<<<<
|
|
@@ -20114,7 +20123,7 @@ static CYTHON_INLINE NPY_DATETIMEUNIT __pyx_f_5numpy_get_datetime64_unit(PyObjec
|
|
|
20114
20123
|
__pyx_r = ((NPY_DATETIMEUNIT)((PyDatetimeScalarObject *)__pyx_v_obj)->obmeta.base);
|
|
20115
20124
|
goto __pyx_L0;
|
|
20116
20125
|
|
|
20117
|
-
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
|
|
20126
|
+
/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":1046
|
|
20118
20127
|
*
|
|
20119
20128
|
*
|
|
20120
20129
|
* cdef inline NPY_DATETIMEUNIT get_datetime64_unit(object obj) nogil: # <<<<<<<<<<<<<<
|
|
@@ -23190,7 +23199,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris___init__(CYTHON_UN
|
|
|
23190
23199
|
*
|
|
23191
23200
|
* @cython.boundscheck(False) # <<<<<<<<<<<<<<
|
|
23192
23201
|
* @cython.wraparound(False)
|
|
23193
|
-
* def fit(self, input_matrix: Union[sparse.csr_matrix, np.ndarray]) -> 'Paris':
|
|
23202
|
+
* def fit(self, input_matrix: Union[sparse.csr_matrix, np.ndarray], force_bipartite: bool = False) -> 'Paris':
|
|
23194
23203
|
*/
|
|
23195
23204
|
|
|
23196
23205
|
/* Python wrapper */
|
|
@@ -23201,7 +23210,7 @@ PyObject *const *__pyx_args, Py_ssize_t __pyx_nargs, PyObject *__pyx_kwds
|
|
|
23201
23210
|
PyObject *__pyx_args, PyObject *__pyx_kwds
|
|
23202
23211
|
#endif
|
|
23203
23212
|
); /*proto*/
|
|
23204
|
-
PyDoc_STRVAR(__pyx_doc_9sknetwork_9hierarchy_5paris_5Paris_2fit, "Agglomerative clustering using the nearest neighbor chain.\n\n Parameters\n ----------\n input_matrix : sparse.csr_matrix, np.ndarray\n Adjacency matrix or biadjacency matrix of the graph.\n\n Returns\n -------\n self: :class:`Paris`\n ");
|
|
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+
PyDoc_STRVAR(__pyx_doc_9sknetwork_9hierarchy_5paris_5Paris_2fit, "Agglomerative clustering using the nearest neighbor chain.\n\n Parameters\n ----------\n input_matrix : sparse.csr_matrix, np.ndarray\n Adjacency matrix or biadjacency matrix of the graph.\n force_bipartite :\n If ``True``, force the input matrix to be considered as a biadjacency matrix.\n\n Returns\n -------\n self: :class:`Paris`\n ");
|
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static PyMethodDef __pyx_mdef_9sknetwork_9hierarchy_5paris_5Paris_3fit = {"fit", (PyCFunction)(void*)(__Pyx_PyCFunction_FastCallWithKeywords)__pyx_pw_9sknetwork_9hierarchy_5paris_5Paris_3fit, __Pyx_METH_FASTCALL|METH_KEYWORDS, __pyx_doc_9sknetwork_9hierarchy_5paris_5Paris_2fit};
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|
static PyObject *__pyx_pw_9sknetwork_9hierarchy_5paris_5Paris_3fit(PyObject *__pyx_self,
|
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#if CYTHON_METH_FASTCALL
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) {
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PyObject *__pyx_v_input_matrix = 0;
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PyObject *__pyx_v_force_bipartite = 0;
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#if !CYTHON_METH_FASTCALL
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#endif
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{
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PyObject **__pyx_pyargnames[] = {&__pyx_n_s_self,&__pyx_n_s_input_matrix,0};
|
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+
PyObject **__pyx_pyargnames[] = {&__pyx_n_s_self,&__pyx_n_s_input_matrix,&__pyx_n_s_force_bipartite,0};
|
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+
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/* "sknetwork/hierarchy/paris.pyx":215
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* @cython.boundscheck(False)
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+
* @cython.wraparound(False)
|
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|
+
* def fit(self, input_matrix: Union[sparse.csr_matrix, np.ndarray], force_bipartite: bool = False) -> 'Paris': # <<<<<<<<<<<<<<
|
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|
+
* """Agglomerative clustering using the nearest neighbor chain.
|
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+
*
|
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+
*/
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values[2] = __Pyx_Arg_NewRef_FASTCALL(((PyObject *)((PyObject *)Py_False)));
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if (__pyx_kwds) {
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case 3: values[2] = __Pyx_Arg_FASTCALL(__pyx_args, 2);
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case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1);
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CYTHON_FALLTHROUGH;
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case 1: values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0);
|
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PyObject* value = __Pyx_GetKwValue_FASTCALL(__pyx_kwds, __pyx_kwvalues, __pyx_n_s_force_bipartite);
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if (value) { values[2] = __Pyx_Arg_NewRef_FASTCALL(value); kw_args--; }
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if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_kwvalues, __pyx_pyargnames, 0, values + 0, kwd_pos_args, "fit") < 0)) __PYX_ERR(0, 213, __pyx_L3_error)
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} else if (unlikely(__pyx_nargs != 2)) {
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case 2: values[1] = __Pyx_Arg_FASTCALL(__pyx_args, 1);
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values[0] = __Pyx_Arg_FASTCALL(__pyx_args, 0);
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__pyx_v_force_bipartite = values[2];
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__pyx_r = __pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(__pyx_self, __pyx_v_self, __pyx_v_input_matrix);
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__pyx_r = __pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(__pyx_self, __pyx_v_self, __pyx_v_input_matrix, __pyx_v_force_bipartite);
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/* "sknetwork/hierarchy/paris.pyx":213
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* self.bipartite = None
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|
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|
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* def fit(self, input_matrix: Union[sparse.csr_matrix, np.ndarray], force_bipartite: bool = False) -> 'Paris':
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{
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static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_input_matrix) {
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static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_input_matrix, PyObject *__pyx_v_force_bipartite) {
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/* "sknetwork/hierarchy/paris.pyx":229
|
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|
* self: :class:`Paris`
|
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* """
|
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|
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|
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/* "sknetwork/hierarchy/paris.pyx":
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* # input
|
|
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|
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*
|
|
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|
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* adjacency, self.bipartite = get_adjacency(input_matrix)
|
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*
|
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|
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|
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{
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/* "sknetwork/hierarchy/paris.pyx":231
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* # input
|
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* input_matrix = check_format(input_matrix)
|
|
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|
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* adjacency, self.bipartite = get_adjacency(input_matrix) # <<<<<<<<<<<<<<
|
|
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|
+
* adjacency, self.bipartite = get_adjacency(input_matrix, force_bipartite=force_bipartite) # <<<<<<<<<<<<<<
|
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|
*
|
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|
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__Pyx_GetModuleGlobalName(
|
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|
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__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_n_s_get_adjacency); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 232, __pyx_L1_error)
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__Pyx_GOTREF(__pyx_t_1);
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__pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 232, __pyx_L1_error)
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#endif
|
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{
|
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|
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|
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|
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__pyx_t_1 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 1+__pyx_t_4);
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__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
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if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 231, __pyx_L1_error)
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PyObject* sequence = __pyx_t_1;
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__Pyx_INCREF(__pyx_v_input_matrix);
|
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|
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|
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if (__Pyx_PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_v_input_matrix)) __PYX_ERR(0, 232, __pyx_L1_error);
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__Pyx_GOTREF(__pyx_t_3);
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|
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if (PyDict_SetItem(__pyx_t_3, __pyx_n_s_force_bipartite, __pyx_v_force_bipartite) < 0) __PYX_ERR(0, 232, __pyx_L1_error)
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|
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|
|
23449
|
+
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
23450
|
+
if ((likely(PyTuple_CheckExact(__pyx_t_5))) || (PyList_CheckExact(__pyx_t_5))) {
|
|
23451
|
+
PyObject* sequence = __pyx_t_5;
|
|
23455
23452
|
Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
|
|
23456
23453
|
if (unlikely(size != 2)) {
|
|
23457
23454
|
if (size > 2) __Pyx_RaiseTooManyValuesError(2);
|
|
23458
23455
|
else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
|
|
23459
|
-
__PYX_ERR(0,
|
|
23456
|
+
__PYX_ERR(0, 232, __pyx_L1_error)
|
|
23460
23457
|
}
|
|
23461
23458
|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
23462
23459
|
if (likely(PyTuple_CheckExact(sequence))) {
|
|
23463
|
-
|
|
23464
|
-
|
|
23460
|
+
__pyx_t_3 = PyTuple_GET_ITEM(sequence, 0);
|
|
23461
|
+
__pyx_t_2 = PyTuple_GET_ITEM(sequence, 1);
|
|
23465
23462
|
} else {
|
|
23466
|
-
|
|
23467
|
-
|
|
23463
|
+
__pyx_t_3 = PyList_GET_ITEM(sequence, 0);
|
|
23464
|
+
__pyx_t_2 = PyList_GET_ITEM(sequence, 1);
|
|
23468
23465
|
}
|
|
23469
|
-
__Pyx_INCREF(__pyx_t_2);
|
|
23470
23466
|
__Pyx_INCREF(__pyx_t_3);
|
|
23467
|
+
__Pyx_INCREF(__pyx_t_2);
|
|
23471
23468
|
#else
|
|
23472
|
-
|
|
23473
|
-
__Pyx_GOTREF(__pyx_t_2);
|
|
23474
|
-
__pyx_t_3 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 231, __pyx_L1_error)
|
|
23469
|
+
__pyx_t_3 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 232, __pyx_L1_error)
|
|
23475
23470
|
__Pyx_GOTREF(__pyx_t_3);
|
|
23471
|
+
__pyx_t_2 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 232, __pyx_L1_error)
|
|
23472
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23476
23473
|
#endif
|
|
23477
|
-
__Pyx_DECREF(
|
|
23474
|
+
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
23478
23475
|
} else {
|
|
23479
23476
|
Py_ssize_t index = -1;
|
|
23480
|
-
|
|
23481
|
-
__Pyx_GOTREF(
|
|
23482
|
-
__Pyx_DECREF(
|
|
23483
|
-
__pyx_t_6 = __Pyx_PyObject_GetIterNextFunc(
|
|
23484
|
-
index = 0;
|
|
23485
|
-
__Pyx_GOTREF(__pyx_t_2);
|
|
23486
|
-
index = 1; __pyx_t_3 = __pyx_t_6(__pyx_t_5); if (unlikely(!__pyx_t_3)) goto __pyx_L3_unpacking_failed;
|
|
23477
|
+
__pyx_t_1 = PyObject_GetIter(__pyx_t_5); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 232, __pyx_L1_error)
|
|
23478
|
+
__Pyx_GOTREF(__pyx_t_1);
|
|
23479
|
+
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
23480
|
+
__pyx_t_6 = __Pyx_PyObject_GetIterNextFunc(__pyx_t_1);
|
|
23481
|
+
index = 0; __pyx_t_3 = __pyx_t_6(__pyx_t_1); if (unlikely(!__pyx_t_3)) goto __pyx_L3_unpacking_failed;
|
|
23487
23482
|
__Pyx_GOTREF(__pyx_t_3);
|
|
23488
|
-
|
|
23483
|
+
index = 1; __pyx_t_2 = __pyx_t_6(__pyx_t_1); if (unlikely(!__pyx_t_2)) goto __pyx_L3_unpacking_failed;
|
|
23484
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23485
|
+
if (__Pyx_IternextUnpackEndCheck(__pyx_t_6(__pyx_t_1), 2) < 0) __PYX_ERR(0, 232, __pyx_L1_error)
|
|
23489
23486
|
__pyx_t_6 = NULL;
|
|
23490
|
-
__Pyx_DECREF(
|
|
23487
|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
23491
23488
|
goto __pyx_L4_unpacking_done;
|
|
23492
23489
|
__pyx_L3_unpacking_failed:;
|
|
23493
|
-
__Pyx_DECREF(
|
|
23490
|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
23494
23491
|
__pyx_t_6 = NULL;
|
|
23495
23492
|
if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
|
|
23496
|
-
__PYX_ERR(0,
|
|
23493
|
+
__PYX_ERR(0, 232, __pyx_L1_error)
|
|
23497
23494
|
__pyx_L4_unpacking_done:;
|
|
23498
23495
|
}
|
|
23499
|
-
__pyx_v_adjacency =
|
|
23500
|
-
|
|
23501
|
-
if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_bipartite,
|
|
23502
|
-
__Pyx_DECREF(
|
|
23496
|
+
__pyx_v_adjacency = __pyx_t_3;
|
|
23497
|
+
__pyx_t_3 = 0;
|
|
23498
|
+
if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_bipartite, __pyx_t_2) < 0) __PYX_ERR(0, 232, __pyx_L1_error)
|
|
23499
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23503
23500
|
|
|
23504
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23505
|
-
* adjacency, self.bipartite = get_adjacency(input_matrix)
|
|
23501
|
+
/* "sknetwork/hierarchy/paris.pyx":234
|
|
23502
|
+
* adjacency, self.bipartite = get_adjacency(input_matrix, force_bipartite=force_bipartite)
|
|
23506
23503
|
*
|
|
23507
23504
|
* weights = self.weights # <<<<<<<<<<<<<<
|
|
23508
23505
|
* out_weights = get_probs(weights, adjacency)
|
|
23509
23506
|
* in_weights = get_probs(weights, adjacency.T)
|
|
23510
23507
|
*/
|
|
23511
|
-
|
|
23512
|
-
__Pyx_GOTREF(
|
|
23513
|
-
__pyx_v_weights =
|
|
23514
|
-
|
|
23508
|
+
__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_weights); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 234, __pyx_L1_error)
|
|
23509
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
23510
|
+
__pyx_v_weights = __pyx_t_5;
|
|
23511
|
+
__pyx_t_5 = 0;
|
|
23515
23512
|
|
|
23516
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23513
|
+
/* "sknetwork/hierarchy/paris.pyx":235
|
|
23517
23514
|
*
|
|
23518
23515
|
* weights = self.weights
|
|
23519
23516
|
* out_weights = get_probs(weights, adjacency) # <<<<<<<<<<<<<<
|
|
23520
23517
|
* in_weights = get_probs(weights, adjacency.T)
|
|
23521
23518
|
*
|
|
23522
23519
|
*/
|
|
23523
|
-
__Pyx_GetModuleGlobalName(
|
|
23524
|
-
__Pyx_GOTREF(
|
|
23525
|
-
|
|
23520
|
+
__Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_get_probs); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 235, __pyx_L1_error)
|
|
23521
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23522
|
+
__pyx_t_3 = NULL;
|
|
23526
23523
|
__pyx_t_4 = 0;
|
|
23527
23524
|
#if CYTHON_UNPACK_METHODS
|
|
23528
|
-
if (unlikely(PyMethod_Check(
|
|
23529
|
-
|
|
23530
|
-
if (likely(
|
|
23531
|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
23532
|
-
__Pyx_INCREF(
|
|
23525
|
+
if (unlikely(PyMethod_Check(__pyx_t_2))) {
|
|
23526
|
+
__pyx_t_3 = PyMethod_GET_SELF(__pyx_t_2);
|
|
23527
|
+
if (likely(__pyx_t_3)) {
|
|
23528
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
|
|
23529
|
+
__Pyx_INCREF(__pyx_t_3);
|
|
23533
23530
|
__Pyx_INCREF(function);
|
|
23534
|
-
__Pyx_DECREF_SET(
|
|
23531
|
+
__Pyx_DECREF_SET(__pyx_t_2, function);
|
|
23535
23532
|
__pyx_t_4 = 1;
|
|
23536
23533
|
}
|
|
23537
23534
|
}
|
|
23538
23535
|
#endif
|
|
23539
23536
|
{
|
|
23540
|
-
PyObject *__pyx_callargs[3] = {
|
|
23541
|
-
|
|
23542
|
-
__Pyx_XDECREF(
|
|
23543
|
-
if (unlikely(!
|
|
23544
|
-
__Pyx_GOTREF(
|
|
23545
|
-
__Pyx_DECREF(
|
|
23537
|
+
PyObject *__pyx_callargs[3] = {__pyx_t_3, __pyx_v_weights, __pyx_v_adjacency};
|
|
23538
|
+
__pyx_t_5 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 2+__pyx_t_4);
|
|
23539
|
+
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
23540
|
+
if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 235, __pyx_L1_error)
|
|
23541
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
23542
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23546
23543
|
}
|
|
23547
|
-
__pyx_v_out_weights =
|
|
23548
|
-
|
|
23544
|
+
__pyx_v_out_weights = __pyx_t_5;
|
|
23545
|
+
__pyx_t_5 = 0;
|
|
23549
23546
|
|
|
23550
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23547
|
+
/* "sknetwork/hierarchy/paris.pyx":236
|
|
23551
23548
|
* weights = self.weights
|
|
23552
23549
|
* out_weights = get_probs(weights, adjacency)
|
|
23553
23550
|
* in_weights = get_probs(weights, adjacency.T) # <<<<<<<<<<<<<<
|
|
23554
23551
|
*
|
|
23555
23552
|
* if not is_symmetric(adjacency):
|
|
23556
23553
|
*/
|
|
23557
|
-
__Pyx_GetModuleGlobalName(
|
|
23558
|
-
__Pyx_GOTREF(__pyx_t_3);
|
|
23559
|
-
__pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_adjacency, __pyx_n_s_T); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 235, __pyx_L1_error)
|
|
23554
|
+
__Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_get_probs); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 236, __pyx_L1_error)
|
|
23560
23555
|
__Pyx_GOTREF(__pyx_t_2);
|
|
23561
|
-
|
|
23556
|
+
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_adjacency, __pyx_n_s_T); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 236, __pyx_L1_error)
|
|
23557
|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
23558
|
+
__pyx_t_1 = NULL;
|
|
23562
23559
|
__pyx_t_4 = 0;
|
|
23563
23560
|
#if CYTHON_UNPACK_METHODS
|
|
23564
|
-
if (unlikely(PyMethod_Check(
|
|
23565
|
-
|
|
23566
|
-
if (likely(
|
|
23567
|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
23568
|
-
__Pyx_INCREF(
|
|
23561
|
+
if (unlikely(PyMethod_Check(__pyx_t_2))) {
|
|
23562
|
+
__pyx_t_1 = PyMethod_GET_SELF(__pyx_t_2);
|
|
23563
|
+
if (likely(__pyx_t_1)) {
|
|
23564
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
|
|
23565
|
+
__Pyx_INCREF(__pyx_t_1);
|
|
23569
23566
|
__Pyx_INCREF(function);
|
|
23570
|
-
__Pyx_DECREF_SET(
|
|
23567
|
+
__Pyx_DECREF_SET(__pyx_t_2, function);
|
|
23571
23568
|
__pyx_t_4 = 1;
|
|
23572
23569
|
}
|
|
23573
23570
|
}
|
|
23574
23571
|
#endif
|
|
23575
23572
|
{
|
|
23576
|
-
PyObject *__pyx_callargs[3] = {
|
|
23577
|
-
|
|
23578
|
-
__Pyx_XDECREF(
|
|
23579
|
-
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23580
|
-
if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 235, __pyx_L1_error)
|
|
23581
|
-
__Pyx_GOTREF(__pyx_t_1);
|
|
23573
|
+
PyObject *__pyx_callargs[3] = {__pyx_t_1, __pyx_v_weights, __pyx_t_3};
|
|
23574
|
+
__pyx_t_5 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 2+__pyx_t_4);
|
|
23575
|
+
__Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
23582
23576
|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
23577
|
+
if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 236, __pyx_L1_error)
|
|
23578
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
23579
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23583
23580
|
}
|
|
23584
|
-
__pyx_v_in_weights =
|
|
23585
|
-
|
|
23581
|
+
__pyx_v_in_weights = __pyx_t_5;
|
|
23582
|
+
__pyx_t_5 = 0;
|
|
23586
23583
|
|
|
23587
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23584
|
+
/* "sknetwork/hierarchy/paris.pyx":238
|
|
23588
23585
|
* in_weights = get_probs(weights, adjacency.T)
|
|
23589
23586
|
*
|
|
23590
23587
|
* if not is_symmetric(adjacency): # <<<<<<<<<<<<<<
|
|
23591
23588
|
* adjacency = directed2undirected(adjacency)
|
|
23592
23589
|
*
|
|
23593
23590
|
*/
|
|
23594
|
-
__Pyx_GetModuleGlobalName(
|
|
23595
|
-
__Pyx_GOTREF(
|
|
23596
|
-
|
|
23591
|
+
__Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_is_symmetric); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 238, __pyx_L1_error)
|
|
23592
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23593
|
+
__pyx_t_3 = NULL;
|
|
23597
23594
|
__pyx_t_4 = 0;
|
|
23598
23595
|
#if CYTHON_UNPACK_METHODS
|
|
23599
|
-
if (unlikely(PyMethod_Check(
|
|
23600
|
-
|
|
23601
|
-
if (likely(
|
|
23602
|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
23603
|
-
__Pyx_INCREF(
|
|
23596
|
+
if (unlikely(PyMethod_Check(__pyx_t_2))) {
|
|
23597
|
+
__pyx_t_3 = PyMethod_GET_SELF(__pyx_t_2);
|
|
23598
|
+
if (likely(__pyx_t_3)) {
|
|
23599
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
|
|
23600
|
+
__Pyx_INCREF(__pyx_t_3);
|
|
23604
23601
|
__Pyx_INCREF(function);
|
|
23605
|
-
__Pyx_DECREF_SET(
|
|
23602
|
+
__Pyx_DECREF_SET(__pyx_t_2, function);
|
|
23606
23603
|
__pyx_t_4 = 1;
|
|
23607
23604
|
}
|
|
23608
23605
|
}
|
|
23609
23606
|
#endif
|
|
23610
23607
|
{
|
|
23611
|
-
PyObject *__pyx_callargs[2] = {
|
|
23612
|
-
|
|
23613
|
-
__Pyx_XDECREF(
|
|
23614
|
-
if (unlikely(!
|
|
23615
|
-
__Pyx_GOTREF(
|
|
23616
|
-
__Pyx_DECREF(
|
|
23608
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_3, __pyx_v_adjacency};
|
|
23609
|
+
__pyx_t_5 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 1+__pyx_t_4);
|
|
23610
|
+
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
23611
|
+
if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 238, __pyx_L1_error)
|
|
23612
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
23613
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23617
23614
|
}
|
|
23618
|
-
__pyx_t_7 = __Pyx_PyObject_IsTrue(
|
|
23619
|
-
__Pyx_DECREF(
|
|
23615
|
+
__pyx_t_7 = __Pyx_PyObject_IsTrue(__pyx_t_5); if (unlikely((__pyx_t_7 < 0))) __PYX_ERR(0, 238, __pyx_L1_error)
|
|
23616
|
+
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
23620
23617
|
__pyx_t_8 = (!__pyx_t_7);
|
|
23621
23618
|
if (__pyx_t_8) {
|
|
23622
23619
|
|
|
23623
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23620
|
+
/* "sknetwork/hierarchy/paris.pyx":239
|
|
23624
23621
|
*
|
|
23625
23622
|
* if not is_symmetric(adjacency):
|
|
23626
23623
|
* adjacency = directed2undirected(adjacency) # <<<<<<<<<<<<<<
|
|
23627
23624
|
*
|
|
23628
23625
|
* null_weights = (out_weights + in_weights) == 0
|
|
23629
23626
|
*/
|
|
23630
|
-
__Pyx_GetModuleGlobalName(
|
|
23631
|
-
__Pyx_GOTREF(
|
|
23632
|
-
|
|
23627
|
+
__Pyx_GetModuleGlobalName(__pyx_t_2, __pyx_n_s_directed2undirected); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 239, __pyx_L1_error)
|
|
23628
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23629
|
+
__pyx_t_3 = NULL;
|
|
23633
23630
|
__pyx_t_4 = 0;
|
|
23634
23631
|
#if CYTHON_UNPACK_METHODS
|
|
23635
|
-
if (unlikely(PyMethod_Check(
|
|
23636
|
-
|
|
23637
|
-
if (likely(
|
|
23638
|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
23639
|
-
__Pyx_INCREF(
|
|
23632
|
+
if (unlikely(PyMethod_Check(__pyx_t_2))) {
|
|
23633
|
+
__pyx_t_3 = PyMethod_GET_SELF(__pyx_t_2);
|
|
23634
|
+
if (likely(__pyx_t_3)) {
|
|
23635
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_2);
|
|
23636
|
+
__Pyx_INCREF(__pyx_t_3);
|
|
23640
23637
|
__Pyx_INCREF(function);
|
|
23641
|
-
__Pyx_DECREF_SET(
|
|
23638
|
+
__Pyx_DECREF_SET(__pyx_t_2, function);
|
|
23642
23639
|
__pyx_t_4 = 1;
|
|
23643
23640
|
}
|
|
23644
23641
|
}
|
|
23645
23642
|
#endif
|
|
23646
23643
|
{
|
|
23647
|
-
PyObject *__pyx_callargs[2] = {
|
|
23648
|
-
|
|
23649
|
-
__Pyx_XDECREF(
|
|
23650
|
-
if (unlikely(!
|
|
23651
|
-
__Pyx_GOTREF(
|
|
23652
|
-
__Pyx_DECREF(
|
|
23644
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_3, __pyx_v_adjacency};
|
|
23645
|
+
__pyx_t_5 = __Pyx_PyObject_FastCall(__pyx_t_2, __pyx_callargs+1-__pyx_t_4, 1+__pyx_t_4);
|
|
23646
|
+
__Pyx_XDECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
23647
|
+
if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 239, __pyx_L1_error)
|
|
23648
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
23649
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23653
23650
|
}
|
|
23654
|
-
__Pyx_DECREF_SET(__pyx_v_adjacency,
|
|
23655
|
-
|
|
23651
|
+
__Pyx_DECREF_SET(__pyx_v_adjacency, __pyx_t_5);
|
|
23652
|
+
__pyx_t_5 = 0;
|
|
23656
23653
|
|
|
23657
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23654
|
+
/* "sknetwork/hierarchy/paris.pyx":238
|
|
23658
23655
|
* in_weights = get_probs(weights, adjacency.T)
|
|
23659
23656
|
*
|
|
23660
23657
|
* if not is_symmetric(adjacency): # <<<<<<<<<<<<<<
|
|
@@ -23663,100 +23660,100 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
23663
23660
|
*/
|
|
23664
23661
|
}
|
|
23665
23662
|
|
|
23666
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23663
|
+
/* "sknetwork/hierarchy/paris.pyx":241
|
|
23667
23664
|
* adjacency = directed2undirected(adjacency)
|
|
23668
23665
|
*
|
|
23669
23666
|
* null_weights = (out_weights + in_weights) == 0 # <<<<<<<<<<<<<<
|
|
23670
23667
|
* if any(null_weights):
|
|
23671
23668
|
* adjacency += sparse.diags(null_weights.astype(int))
|
|
23672
23669
|
*/
|
|
23673
|
-
|
|
23674
|
-
__Pyx_GOTREF(
|
|
23675
|
-
|
|
23676
|
-
__Pyx_GOTREF(
|
|
23677
|
-
__Pyx_DECREF(
|
|
23678
|
-
__pyx_v_null_weights =
|
|
23679
|
-
|
|
23670
|
+
__pyx_t_5 = PyNumber_Add(__pyx_v_out_weights, __pyx_v_in_weights); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 241, __pyx_L1_error)
|
|
23671
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
23672
|
+
__pyx_t_2 = __Pyx_PyInt_EqObjC(__pyx_t_5, __pyx_int_0, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 241, __pyx_L1_error)
|
|
23673
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23674
|
+
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
23675
|
+
__pyx_v_null_weights = __pyx_t_2;
|
|
23676
|
+
__pyx_t_2 = 0;
|
|
23680
23677
|
|
|
23681
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23678
|
+
/* "sknetwork/hierarchy/paris.pyx":242
|
|
23682
23679
|
*
|
|
23683
23680
|
* null_weights = (out_weights + in_weights) == 0
|
|
23684
23681
|
* if any(null_weights): # <<<<<<<<<<<<<<
|
|
23685
23682
|
* adjacency += sparse.diags(null_weights.astype(int))
|
|
23686
23683
|
*
|
|
23687
23684
|
*/
|
|
23688
|
-
|
|
23689
|
-
__Pyx_GOTREF(
|
|
23690
|
-
__pyx_t_8 = __Pyx_PyObject_IsTrue(
|
|
23691
|
-
__Pyx_DECREF(
|
|
23685
|
+
__pyx_t_2 = __Pyx_PyObject_CallOneArg(__pyx_builtin_any, __pyx_v_null_weights); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 242, __pyx_L1_error)
|
|
23686
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23687
|
+
__pyx_t_8 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0, 242, __pyx_L1_error)
|
|
23688
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23692
23689
|
if (__pyx_t_8) {
|
|
23693
23690
|
|
|
23694
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23691
|
+
/* "sknetwork/hierarchy/paris.pyx":243
|
|
23695
23692
|
* null_weights = (out_weights + in_weights) == 0
|
|
23696
23693
|
* if any(null_weights):
|
|
23697
23694
|
* adjacency += sparse.diags(null_weights.astype(int)) # <<<<<<<<<<<<<<
|
|
23698
23695
|
*
|
|
23699
23696
|
* if adjacency.shape[0] <= 1:
|
|
23700
23697
|
*/
|
|
23701
|
-
__Pyx_GetModuleGlobalName(
|
|
23702
|
-
__Pyx_GOTREF(__pyx_t_1);
|
|
23703
|
-
__pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_diags); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 242, __pyx_L1_error)
|
|
23704
|
-
__Pyx_GOTREF(__pyx_t_2);
|
|
23705
|
-
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
23706
|
-
__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_null_weights, __pyx_n_s_astype); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 242, __pyx_L1_error)
|
|
23698
|
+
__Pyx_GetModuleGlobalName(__pyx_t_5, __pyx_n_s_sparse); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 243, __pyx_L1_error)
|
|
23707
23699
|
__Pyx_GOTREF(__pyx_t_5);
|
|
23700
|
+
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_diags); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 243, __pyx_L1_error)
|
|
23701
|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
23702
|
+
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
23703
|
+
__pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_null_weights, __pyx_n_s_astype); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 243, __pyx_L1_error)
|
|
23704
|
+
__Pyx_GOTREF(__pyx_t_1);
|
|
23708
23705
|
__pyx_t_9 = NULL;
|
|
23709
23706
|
__pyx_t_4 = 0;
|
|
23710
23707
|
#if CYTHON_UNPACK_METHODS
|
|
23711
|
-
if (likely(PyMethod_Check(
|
|
23712
|
-
__pyx_t_9 = PyMethod_GET_SELF(
|
|
23708
|
+
if (likely(PyMethod_Check(__pyx_t_1))) {
|
|
23709
|
+
__pyx_t_9 = PyMethod_GET_SELF(__pyx_t_1);
|
|
23713
23710
|
if (likely(__pyx_t_9)) {
|
|
23714
|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
23711
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
|
|
23715
23712
|
__Pyx_INCREF(__pyx_t_9);
|
|
23716
23713
|
__Pyx_INCREF(function);
|
|
23717
|
-
__Pyx_DECREF_SET(
|
|
23714
|
+
__Pyx_DECREF_SET(__pyx_t_1, function);
|
|
23718
23715
|
__pyx_t_4 = 1;
|
|
23719
23716
|
}
|
|
23720
23717
|
}
|
|
23721
23718
|
#endif
|
|
23722
23719
|
{
|
|
23723
23720
|
PyObject *__pyx_callargs[2] = {__pyx_t_9, ((PyObject *)(&PyInt_Type))};
|
|
23724
|
-
|
|
23721
|
+
__pyx_t_5 = __Pyx_PyObject_FastCall(__pyx_t_1, __pyx_callargs+1-__pyx_t_4, 1+__pyx_t_4);
|
|
23725
23722
|
__Pyx_XDECREF(__pyx_t_9); __pyx_t_9 = 0;
|
|
23726
|
-
if (unlikely(!
|
|
23727
|
-
__Pyx_GOTREF(
|
|
23728
|
-
__Pyx_DECREF(
|
|
23723
|
+
if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 243, __pyx_L1_error)
|
|
23724
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
23725
|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
23729
23726
|
}
|
|
23730
|
-
|
|
23727
|
+
__pyx_t_1 = NULL;
|
|
23731
23728
|
__pyx_t_4 = 0;
|
|
23732
23729
|
#if CYTHON_UNPACK_METHODS
|
|
23733
|
-
if (unlikely(PyMethod_Check(
|
|
23734
|
-
|
|
23735
|
-
if (likely(
|
|
23736
|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
23737
|
-
__Pyx_INCREF(
|
|
23730
|
+
if (unlikely(PyMethod_Check(__pyx_t_3))) {
|
|
23731
|
+
__pyx_t_1 = PyMethod_GET_SELF(__pyx_t_3);
|
|
23732
|
+
if (likely(__pyx_t_1)) {
|
|
23733
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
|
|
23734
|
+
__Pyx_INCREF(__pyx_t_1);
|
|
23738
23735
|
__Pyx_INCREF(function);
|
|
23739
|
-
__Pyx_DECREF_SET(
|
|
23736
|
+
__Pyx_DECREF_SET(__pyx_t_3, function);
|
|
23740
23737
|
__pyx_t_4 = 1;
|
|
23741
23738
|
}
|
|
23742
23739
|
}
|
|
23743
23740
|
#endif
|
|
23744
23741
|
{
|
|
23745
|
-
PyObject *__pyx_callargs[2] = {
|
|
23746
|
-
|
|
23747
|
-
__Pyx_XDECREF(
|
|
23748
|
-
__Pyx_DECREF(
|
|
23749
|
-
if (unlikely(!
|
|
23750
|
-
__Pyx_GOTREF(
|
|
23751
|
-
__Pyx_DECREF(
|
|
23742
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_1, __pyx_t_5};
|
|
23743
|
+
__pyx_t_2 = __Pyx_PyObject_FastCall(__pyx_t_3, __pyx_callargs+1-__pyx_t_4, 1+__pyx_t_4);
|
|
23744
|
+
__Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
23745
|
+
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
23746
|
+
if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 243, __pyx_L1_error)
|
|
23747
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23748
|
+
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
23752
23749
|
}
|
|
23753
|
-
|
|
23754
|
-
__Pyx_GOTREF(
|
|
23755
|
-
__Pyx_DECREF(
|
|
23756
|
-
__Pyx_DECREF_SET(__pyx_v_adjacency,
|
|
23757
|
-
|
|
23750
|
+
__pyx_t_3 = PyNumber_InPlaceAdd(__pyx_v_adjacency, __pyx_t_2); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 243, __pyx_L1_error)
|
|
23751
|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
23752
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23753
|
+
__Pyx_DECREF_SET(__pyx_v_adjacency, __pyx_t_3);
|
|
23754
|
+
__pyx_t_3 = 0;
|
|
23758
23755
|
|
|
23759
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23756
|
+
/* "sknetwork/hierarchy/paris.pyx":242
|
|
23760
23757
|
*
|
|
23761
23758
|
* null_weights = (out_weights + in_weights) == 0
|
|
23762
23759
|
* if any(null_weights): # <<<<<<<<<<<<<<
|
|
@@ -23765,38 +23762,38 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
23765
23762
|
*/
|
|
23766
23763
|
}
|
|
23767
23764
|
|
|
23768
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23765
|
+
/* "sknetwork/hierarchy/paris.pyx":245
|
|
23769
23766
|
* adjacency += sparse.diags(null_weights.astype(int))
|
|
23770
23767
|
*
|
|
23771
23768
|
* if adjacency.shape[0] <= 1: # <<<<<<<<<<<<<<
|
|
23772
23769
|
* raise ValueError('The graph must contain at least two nodes.')
|
|
23773
23770
|
*
|
|
23774
23771
|
*/
|
|
23775
|
-
|
|
23776
|
-
__Pyx_GOTREF(__pyx_t_2);
|
|
23777
|
-
__pyx_t_3 = __Pyx_GetItemInt(__pyx_t_2, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 244, __pyx_L1_error)
|
|
23772
|
+
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_adjacency, __pyx_n_s_shape); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 245, __pyx_L1_error)
|
|
23778
23773
|
__Pyx_GOTREF(__pyx_t_3);
|
|
23779
|
-
|
|
23780
|
-
|
|
23774
|
+
__pyx_t_2 = __Pyx_GetItemInt(__pyx_t_3, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 245, __pyx_L1_error)
|
|
23775
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23781
23776
|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
23782
|
-
|
|
23777
|
+
__pyx_t_3 = PyObject_RichCompare(__pyx_t_2, __pyx_int_1, Py_LE); __Pyx_XGOTREF(__pyx_t_3); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 245, __pyx_L1_error)
|
|
23783
23778
|
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23779
|
+
__pyx_t_8 = __Pyx_PyObject_IsTrue(__pyx_t_3); if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0, 245, __pyx_L1_error)
|
|
23780
|
+
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
23784
23781
|
if (unlikely(__pyx_t_8)) {
|
|
23785
23782
|
|
|
23786
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23783
|
+
/* "sknetwork/hierarchy/paris.pyx":246
|
|
23787
23784
|
*
|
|
23788
23785
|
* if adjacency.shape[0] <= 1:
|
|
23789
23786
|
* raise ValueError('The graph must contain at least two nodes.') # <<<<<<<<<<<<<<
|
|
23790
23787
|
*
|
|
23791
23788
|
* # agglomerative clustering
|
|
23792
23789
|
*/
|
|
23793
|
-
|
|
23794
|
-
__Pyx_GOTREF(
|
|
23795
|
-
__Pyx_Raise(
|
|
23796
|
-
__Pyx_DECREF(
|
|
23797
|
-
__PYX_ERR(0,
|
|
23790
|
+
__pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__11, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 246, __pyx_L1_error)
|
|
23791
|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
23792
|
+
__Pyx_Raise(__pyx_t_3, 0, 0, 0);
|
|
23793
|
+
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
23794
|
+
__PYX_ERR(0, 246, __pyx_L1_error)
|
|
23798
23795
|
|
|
23799
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23796
|
+
/* "sknetwork/hierarchy/paris.pyx":245
|
|
23800
23797
|
* adjacency += sparse.diags(null_weights.astype(int))
|
|
23801
23798
|
*
|
|
23802
23799
|
* if adjacency.shape[0] <= 1: # <<<<<<<<<<<<<<
|
|
@@ -23805,96 +23802,96 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
23805
23802
|
*/
|
|
23806
23803
|
}
|
|
23807
23804
|
|
|
23808
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23805
|
+
/* "sknetwork/hierarchy/paris.pyx":249
|
|
23809
23806
|
*
|
|
23810
23807
|
* # agglomerative clustering
|
|
23811
23808
|
* aggregate_graph = AggregateGraph(out_weights, in_weights, adjacency.data.astype(float), # <<<<<<<<<<<<<<
|
|
23812
23809
|
* adjacency.indices, adjacency.indptr)
|
|
23813
23810
|
*
|
|
23814
23811
|
*/
|
|
23815
|
-
|
|
23816
|
-
__Pyx_GOTREF(
|
|
23817
|
-
|
|
23818
|
-
__Pyx_GOTREF(
|
|
23819
|
-
__Pyx_DECREF(
|
|
23820
|
-
|
|
23812
|
+
__pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_adjacency, __pyx_n_s_data); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 249, __pyx_L1_error)
|
|
23813
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23814
|
+
__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_astype); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 249, __pyx_L1_error)
|
|
23815
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
23816
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23817
|
+
__pyx_t_2 = NULL;
|
|
23821
23818
|
__pyx_t_4 = 0;
|
|
23822
23819
|
#if CYTHON_UNPACK_METHODS
|
|
23823
|
-
if (likely(PyMethod_Check(
|
|
23824
|
-
|
|
23825
|
-
if (likely(
|
|
23826
|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
23827
|
-
__Pyx_INCREF(
|
|
23820
|
+
if (likely(PyMethod_Check(__pyx_t_5))) {
|
|
23821
|
+
__pyx_t_2 = PyMethod_GET_SELF(__pyx_t_5);
|
|
23822
|
+
if (likely(__pyx_t_2)) {
|
|
23823
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
|
|
23824
|
+
__Pyx_INCREF(__pyx_t_2);
|
|
23828
23825
|
__Pyx_INCREF(function);
|
|
23829
|
-
__Pyx_DECREF_SET(
|
|
23826
|
+
__Pyx_DECREF_SET(__pyx_t_5, function);
|
|
23830
23827
|
__pyx_t_4 = 1;
|
|
23831
23828
|
}
|
|
23832
23829
|
}
|
|
23833
23830
|
#endif
|
|
23834
23831
|
{
|
|
23835
|
-
PyObject *__pyx_callargs[2] = {
|
|
23836
|
-
|
|
23837
|
-
__Pyx_XDECREF(
|
|
23838
|
-
if (unlikely(!
|
|
23839
|
-
__Pyx_GOTREF(
|
|
23840
|
-
__Pyx_DECREF(
|
|
23832
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_2, ((PyObject *)(&PyFloat_Type))};
|
|
23833
|
+
__pyx_t_3 = __Pyx_PyObject_FastCall(__pyx_t_5, __pyx_callargs+1-__pyx_t_4, 1+__pyx_t_4);
|
|
23834
|
+
__Pyx_XDECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23835
|
+
if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 249, __pyx_L1_error)
|
|
23836
|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
23837
|
+
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
23841
23838
|
}
|
|
23842
23839
|
|
|
23843
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23840
|
+
/* "sknetwork/hierarchy/paris.pyx":250
|
|
23844
23841
|
* # agglomerative clustering
|
|
23845
23842
|
* aggregate_graph = AggregateGraph(out_weights, in_weights, adjacency.data.astype(float),
|
|
23846
23843
|
* adjacency.indices, adjacency.indptr) # <<<<<<<<<<<<<<
|
|
23847
23844
|
*
|
|
23848
23845
|
* cdef vector[(int, int)] connected_components
|
|
23849
23846
|
*/
|
|
23850
|
-
|
|
23851
|
-
__Pyx_GOTREF(
|
|
23852
|
-
|
|
23853
|
-
__Pyx_GOTREF(
|
|
23847
|
+
__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_v_adjacency, __pyx_n_s_indices); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 250, __pyx_L1_error)
|
|
23848
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
23849
|
+
__pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_adjacency, __pyx_n_s_indptr); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 250, __pyx_L1_error)
|
|
23850
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23854
23851
|
|
|
23855
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23852
|
+
/* "sknetwork/hierarchy/paris.pyx":249
|
|
23856
23853
|
*
|
|
23857
23854
|
* # agglomerative clustering
|
|
23858
23855
|
* aggregate_graph = AggregateGraph(out_weights, in_weights, adjacency.data.astype(float), # <<<<<<<<<<<<<<
|
|
23859
23856
|
* adjacency.indices, adjacency.indptr)
|
|
23860
23857
|
*
|
|
23861
23858
|
*/
|
|
23862
|
-
|
|
23863
|
-
__Pyx_GOTREF(
|
|
23859
|
+
__pyx_t_1 = PyTuple_New(5); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 249, __pyx_L1_error)
|
|
23860
|
+
__Pyx_GOTREF(__pyx_t_1);
|
|
23864
23861
|
__Pyx_INCREF(__pyx_v_out_weights);
|
|
23865
23862
|
__Pyx_GIVEREF(__pyx_v_out_weights);
|
|
23866
|
-
if (__Pyx_PyTuple_SET_ITEM(
|
|
23863
|
+
if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_v_out_weights)) __PYX_ERR(0, 249, __pyx_L1_error);
|
|
23867
23864
|
__Pyx_INCREF(__pyx_v_in_weights);
|
|
23868
23865
|
__Pyx_GIVEREF(__pyx_v_in_weights);
|
|
23869
|
-
if (__Pyx_PyTuple_SET_ITEM(
|
|
23870
|
-
__Pyx_GIVEREF(__pyx_t_2);
|
|
23871
|
-
if (__Pyx_PyTuple_SET_ITEM(__pyx_t_5, 2, __pyx_t_2)) __PYX_ERR(0, 248, __pyx_L1_error);
|
|
23872
|
-
__Pyx_GIVEREF(__pyx_t_1);
|
|
23873
|
-
if (__Pyx_PyTuple_SET_ITEM(__pyx_t_5, 3, __pyx_t_1)) __PYX_ERR(0, 248, __pyx_L1_error);
|
|
23866
|
+
if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_v_in_weights)) __PYX_ERR(0, 249, __pyx_L1_error);
|
|
23874
23867
|
__Pyx_GIVEREF(__pyx_t_3);
|
|
23875
|
-
if (__Pyx_PyTuple_SET_ITEM(
|
|
23876
|
-
|
|
23877
|
-
__pyx_t_1
|
|
23878
|
-
|
|
23879
|
-
|
|
23880
|
-
__Pyx_GOTREF(__pyx_t_3);
|
|
23881
|
-
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
23882
|
-
__pyx_v_aggregate_graph = ((struct __pyx_obj_9sknetwork_9hierarchy_5paris_AggregateGraph *)__pyx_t_3);
|
|
23868
|
+
if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 2, __pyx_t_3)) __PYX_ERR(0, 249, __pyx_L1_error);
|
|
23869
|
+
__Pyx_GIVEREF(__pyx_t_5);
|
|
23870
|
+
if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 3, __pyx_t_5)) __PYX_ERR(0, 249, __pyx_L1_error);
|
|
23871
|
+
__Pyx_GIVEREF(__pyx_t_2);
|
|
23872
|
+
if (__Pyx_PyTuple_SET_ITEM(__pyx_t_1, 4, __pyx_t_2)) __PYX_ERR(0, 249, __pyx_L1_error);
|
|
23883
23873
|
__pyx_t_3 = 0;
|
|
23874
|
+
__pyx_t_5 = 0;
|
|
23875
|
+
__pyx_t_2 = 0;
|
|
23876
|
+
__pyx_t_2 = __Pyx_PyObject_Call(((PyObject *)__pyx_ptype_9sknetwork_9hierarchy_5paris_AggregateGraph), __pyx_t_1, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 249, __pyx_L1_error)
|
|
23877
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23878
|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
23879
|
+
__pyx_v_aggregate_graph = ((struct __pyx_obj_9sknetwork_9hierarchy_5paris_AggregateGraph *)__pyx_t_2);
|
|
23880
|
+
__pyx_t_2 = 0;
|
|
23884
23881
|
|
|
23885
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23882
|
+
/* "sknetwork/hierarchy/paris.pyx":253
|
|
23886
23883
|
*
|
|
23887
23884
|
* cdef vector[(int, int)] connected_components
|
|
23888
23885
|
* dendrogram = [] # <<<<<<<<<<<<<<
|
|
23889
23886
|
* cdef int node
|
|
23890
23887
|
* cdef int next_node
|
|
23891
23888
|
*/
|
|
23892
|
-
|
|
23893
|
-
__Pyx_GOTREF(
|
|
23894
|
-
__pyx_v_dendrogram =
|
|
23895
|
-
|
|
23889
|
+
__pyx_t_2 = PyList_New(0); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 253, __pyx_L1_error)
|
|
23890
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
23891
|
+
__pyx_v_dendrogram = __pyx_t_2;
|
|
23892
|
+
__pyx_t_2 = 0;
|
|
23896
23893
|
|
|
23897
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23894
|
+
/* "sknetwork/hierarchy/paris.pyx":265
|
|
23898
23895
|
* cdef float max_sim
|
|
23899
23896
|
*
|
|
23900
23897
|
* while len(aggregate_graph.cluster_sizes): # <<<<<<<<<<<<<<
|
|
@@ -23902,18 +23899,18 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
23902
23899
|
* break
|
|
23903
23900
|
*/
|
|
23904
23901
|
while (1) {
|
|
23905
|
-
|
|
23906
|
-
__Pyx_INCREF(
|
|
23907
|
-
if (unlikely(
|
|
23902
|
+
__pyx_t_2 = __pyx_v_aggregate_graph->cluster_sizes;
|
|
23903
|
+
__Pyx_INCREF(__pyx_t_2);
|
|
23904
|
+
if (unlikely(__pyx_t_2 == Py_None)) {
|
|
23908
23905
|
PyErr_SetString(PyExc_TypeError, "object of type 'NoneType' has no len()");
|
|
23909
|
-
__PYX_ERR(0,
|
|
23906
|
+
__PYX_ERR(0, 265, __pyx_L1_error)
|
|
23910
23907
|
}
|
|
23911
|
-
__pyx_t_10 = PyDict_Size(
|
|
23912
|
-
__Pyx_DECREF(
|
|
23908
|
+
__pyx_t_10 = PyDict_Size(__pyx_t_2); if (unlikely(__pyx_t_10 == ((Py_ssize_t)-1))) __PYX_ERR(0, 265, __pyx_L1_error)
|
|
23909
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23913
23910
|
__pyx_t_8 = (__pyx_t_10 != 0);
|
|
23914
23911
|
if (!__pyx_t_8) break;
|
|
23915
23912
|
|
|
23916
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23913
|
+
/* "sknetwork/hierarchy/paris.pyx":266
|
|
23917
23914
|
*
|
|
23918
23915
|
* while len(aggregate_graph.cluster_sizes):
|
|
23919
23916
|
* for node in aggregate_graph.cluster_sizes: # <<<<<<<<<<<<<<
|
|
@@ -23923,23 +23920,23 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
23923
23920
|
__pyx_t_10 = 0;
|
|
23924
23921
|
if (unlikely(__pyx_v_aggregate_graph->cluster_sizes == Py_None)) {
|
|
23925
23922
|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
|
|
23926
|
-
__PYX_ERR(0,
|
|
23923
|
+
__PYX_ERR(0, 266, __pyx_L1_error)
|
|
23927
23924
|
}
|
|
23928
|
-
|
|
23929
|
-
__Pyx_GOTREF(
|
|
23930
|
-
__Pyx_XDECREF(
|
|
23931
|
-
|
|
23932
|
-
|
|
23925
|
+
__pyx_t_1 = __Pyx_dict_iterator(__pyx_v_aggregate_graph->cluster_sizes, 1, ((PyObject *)NULL), (&__pyx_t_11), (&__pyx_t_4)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 266, __pyx_L1_error)
|
|
23926
|
+
__Pyx_GOTREF(__pyx_t_1);
|
|
23927
|
+
__Pyx_XDECREF(__pyx_t_2);
|
|
23928
|
+
__pyx_t_2 = __pyx_t_1;
|
|
23929
|
+
__pyx_t_1 = 0;
|
|
23933
23930
|
while (1) {
|
|
23934
|
-
__pyx_t_12 = __Pyx_dict_iter_next(
|
|
23931
|
+
__pyx_t_12 = __Pyx_dict_iter_next(__pyx_t_2, __pyx_t_11, &__pyx_t_10, &__pyx_t_1, NULL, NULL, __pyx_t_4);
|
|
23935
23932
|
if (unlikely(__pyx_t_12 == 0)) break;
|
|
23936
|
-
if (unlikely(__pyx_t_12 == -1)) __PYX_ERR(0,
|
|
23937
|
-
__Pyx_GOTREF(
|
|
23938
|
-
__pyx_t_12 = __Pyx_PyInt_As_int(
|
|
23939
|
-
__Pyx_DECREF(
|
|
23933
|
+
if (unlikely(__pyx_t_12 == -1)) __PYX_ERR(0, 266, __pyx_L1_error)
|
|
23934
|
+
__Pyx_GOTREF(__pyx_t_1);
|
|
23935
|
+
__pyx_t_12 = __Pyx_PyInt_As_int(__pyx_t_1); if (unlikely((__pyx_t_12 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 266, __pyx_L1_error)
|
|
23936
|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
23940
23937
|
__pyx_v_node = __pyx_t_12;
|
|
23941
23938
|
|
|
23942
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23939
|
+
/* "sknetwork/hierarchy/paris.pyx":267
|
|
23943
23940
|
* while len(aggregate_graph.cluster_sizes):
|
|
23944
23941
|
* for node in aggregate_graph.cluster_sizes:
|
|
23945
23942
|
* break # <<<<<<<<<<<<<<
|
|
@@ -23949,9 +23946,9 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
23949
23946
|
goto __pyx_L11_break;
|
|
23950
23947
|
}
|
|
23951
23948
|
__pyx_L11_break:;
|
|
23952
|
-
__Pyx_DECREF(
|
|
23949
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
23953
23950
|
|
|
23954
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23951
|
+
/* "sknetwork/hierarchy/paris.pyx":268
|
|
23955
23952
|
* for node in aggregate_graph.cluster_sizes:
|
|
23956
23953
|
* break
|
|
23957
23954
|
* chain.clear() # <<<<<<<<<<<<<<
|
|
@@ -23960,7 +23957,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
23960
23957
|
*/
|
|
23961
23958
|
__pyx_v_chain.clear();
|
|
23962
23959
|
|
|
23963
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23960
|
+
/* "sknetwork/hierarchy/paris.pyx":269
|
|
23964
23961
|
* break
|
|
23965
23962
|
* chain.clear()
|
|
23966
23963
|
* chain.push_back(node) # <<<<<<<<<<<<<<
|
|
@@ -23971,10 +23968,10 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
23971
23968
|
__pyx_v_chain.push_back(__pyx_v_node);
|
|
23972
23969
|
} catch(...) {
|
|
23973
23970
|
__Pyx_CppExn2PyErr();
|
|
23974
|
-
__PYX_ERR(0,
|
|
23971
|
+
__PYX_ERR(0, 269, __pyx_L1_error)
|
|
23975
23972
|
}
|
|
23976
23973
|
|
|
23977
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23974
|
+
/* "sknetwork/hierarchy/paris.pyx":270
|
|
23978
23975
|
* chain.clear()
|
|
23979
23976
|
* chain.push_back(node)
|
|
23980
23977
|
* while chain.size(): # <<<<<<<<<<<<<<
|
|
@@ -23985,7 +23982,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
23985
23982
|
__pyx_t_8 = (__pyx_v_chain.size() != 0);
|
|
23986
23983
|
if (!__pyx_t_8) break;
|
|
23987
23984
|
|
|
23988
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23985
|
+
/* "sknetwork/hierarchy/paris.pyx":271
|
|
23989
23986
|
* chain.push_back(node)
|
|
23990
23987
|
* while chain.size():
|
|
23991
23988
|
* node = chain[chain.size() - 1] # <<<<<<<<<<<<<<
|
|
@@ -23994,7 +23991,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
23994
23991
|
*/
|
|
23995
23992
|
__pyx_v_node = (__pyx_v_chain[(__pyx_v_chain.size() - 1)]);
|
|
23996
23993
|
|
|
23997
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
23994
|
+
/* "sknetwork/hierarchy/paris.pyx":272
|
|
23998
23995
|
* while chain.size():
|
|
23999
23996
|
* node = chain[chain.size() - 1]
|
|
24000
23997
|
* chain.pop_back() # <<<<<<<<<<<<<<
|
|
@@ -24003,7 +24000,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24003
24000
|
*/
|
|
24004
24001
|
__pyx_v_chain.pop_back();
|
|
24005
24002
|
|
|
24006
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24003
|
+
/* "sknetwork/hierarchy/paris.pyx":273
|
|
24007
24004
|
* node = chain[chain.size() - 1]
|
|
24008
24005
|
* chain.pop_back()
|
|
24009
24006
|
* if set(aggregate_graph.neighbors[node].keys()) - {node}: # <<<<<<<<<<<<<<
|
|
@@ -24012,66 +24009,66 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24012
24009
|
*/
|
|
24013
24010
|
if (unlikely(__pyx_v_aggregate_graph->neighbors == Py_None)) {
|
|
24014
24011
|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
|
|
24015
|
-
__PYX_ERR(0,
|
|
24012
|
+
__PYX_ERR(0, 273, __pyx_L1_error)
|
|
24016
24013
|
}
|
|
24017
|
-
|
|
24018
|
-
__Pyx_GOTREF(__pyx_t_5);
|
|
24019
|
-
__pyx_t_1 = __Pyx_PyDict_GetItem(__pyx_v_aggregate_graph->neighbors, __pyx_t_5); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 272, __pyx_L1_error)
|
|
24014
|
+
__pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 273, __pyx_L1_error)
|
|
24020
24015
|
__Pyx_GOTREF(__pyx_t_1);
|
|
24021
|
-
|
|
24022
|
-
__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_keys); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 272, __pyx_L1_error)
|
|
24016
|
+
__pyx_t_5 = __Pyx_PyDict_GetItem(__pyx_v_aggregate_graph->neighbors, __pyx_t_1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 273, __pyx_L1_error)
|
|
24023
24017
|
__Pyx_GOTREF(__pyx_t_5);
|
|
24024
24018
|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
24025
|
-
__pyx_t_1 =
|
|
24019
|
+
__pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_keys); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 273, __pyx_L1_error)
|
|
24020
|
+
__Pyx_GOTREF(__pyx_t_1);
|
|
24021
|
+
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
24022
|
+
__pyx_t_5 = NULL;
|
|
24026
24023
|
__pyx_t_4 = 0;
|
|
24027
24024
|
#if CYTHON_UNPACK_METHODS
|
|
24028
|
-
if (likely(PyMethod_Check(
|
|
24029
|
-
|
|
24030
|
-
if (likely(
|
|
24031
|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
24032
|
-
__Pyx_INCREF(
|
|
24025
|
+
if (likely(PyMethod_Check(__pyx_t_1))) {
|
|
24026
|
+
__pyx_t_5 = PyMethod_GET_SELF(__pyx_t_1);
|
|
24027
|
+
if (likely(__pyx_t_5)) {
|
|
24028
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_1);
|
|
24029
|
+
__Pyx_INCREF(__pyx_t_5);
|
|
24033
24030
|
__Pyx_INCREF(function);
|
|
24034
|
-
__Pyx_DECREF_SET(
|
|
24031
|
+
__Pyx_DECREF_SET(__pyx_t_1, function);
|
|
24035
24032
|
__pyx_t_4 = 1;
|
|
24036
24033
|
}
|
|
24037
24034
|
}
|
|
24038
24035
|
#endif
|
|
24039
24036
|
{
|
|
24040
|
-
PyObject *__pyx_callargs[2] = {
|
|
24041
|
-
|
|
24042
|
-
__Pyx_XDECREF(
|
|
24043
|
-
if (unlikely(!
|
|
24044
|
-
__Pyx_GOTREF(
|
|
24045
|
-
__Pyx_DECREF(
|
|
24037
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_5, NULL};
|
|
24038
|
+
__pyx_t_2 = __Pyx_PyObject_FastCall(__pyx_t_1, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
|
|
24039
|
+
__Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
24040
|
+
if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 273, __pyx_L1_error)
|
|
24041
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
24042
|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
24046
24043
|
}
|
|
24047
|
-
|
|
24048
|
-
__Pyx_GOTREF(__pyx_t_5);
|
|
24049
|
-
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
24050
|
-
__pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 272, __pyx_L1_error)
|
|
24051
|
-
__Pyx_GOTREF(__pyx_t_3);
|
|
24052
|
-
__pyx_t_1 = PySet_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 272, __pyx_L1_error)
|
|
24044
|
+
__pyx_t_1 = PySet_New(__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 273, __pyx_L1_error)
|
|
24053
24045
|
__Pyx_GOTREF(__pyx_t_1);
|
|
24054
|
-
|
|
24055
|
-
|
|
24056
|
-
|
|
24057
|
-
|
|
24058
|
-
|
|
24046
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
24047
|
+
__pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 273, __pyx_L1_error)
|
|
24048
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
24049
|
+
__pyx_t_5 = PySet_New(0); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 273, __pyx_L1_error)
|
|
24050
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
24051
|
+
if (PySet_Add(__pyx_t_5, __pyx_t_2) < 0) __PYX_ERR(0, 273, __pyx_L1_error)
|
|
24052
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
24053
|
+
__pyx_t_2 = PyNumber_Subtract(__pyx_t_1, __pyx_t_5); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 273, __pyx_L1_error)
|
|
24054
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
24059
24055
|
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
24060
|
-
|
|
24061
|
-
|
|
24056
|
+
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
24057
|
+
__pyx_t_8 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0, 273, __pyx_L1_error)
|
|
24058
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
24062
24059
|
if (__pyx_t_8) {
|
|
24063
24060
|
|
|
24064
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24061
|
+
/* "sknetwork/hierarchy/paris.pyx":274
|
|
24065
24062
|
* chain.pop_back()
|
|
24066
24063
|
* if set(aggregate_graph.neighbors[node].keys()) - {node}:
|
|
24067
24064
|
* max_sim = -float("inf") # <<<<<<<<<<<<<<
|
|
24068
24065
|
* for neighbor in set(aggregate_graph.neighbors[node].keys()) - {node}:
|
|
24069
24066
|
* sim = aggregate_graph.similarity(node, neighbor)
|
|
24070
24067
|
*/
|
|
24071
|
-
__pyx_t_13 = __Pyx_PyUnicode_AsDouble(__pyx_n_u_inf); if (unlikely(__pyx_t_13 == ((double)((double)-1)) && PyErr_Occurred())) __PYX_ERR(0,
|
|
24068
|
+
__pyx_t_13 = __Pyx_PyUnicode_AsDouble(__pyx_n_u_inf); if (unlikely(__pyx_t_13 == ((double)((double)-1)) && PyErr_Occurred())) __PYX_ERR(0, 274, __pyx_L1_error)
|
|
24072
24069
|
__pyx_v_max_sim = (-__pyx_t_13);
|
|
24073
24070
|
|
|
24074
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24071
|
+
/* "sknetwork/hierarchy/paris.pyx":275
|
|
24075
24072
|
* if set(aggregate_graph.neighbors[node].keys()) - {node}:
|
|
24076
24073
|
* max_sim = -float("inf")
|
|
24077
24074
|
* for neighbor in set(aggregate_graph.neighbors[node].keys()) - {node}: # <<<<<<<<<<<<<<
|
|
@@ -24080,119 +24077,119 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24080
24077
|
*/
|
|
24081
24078
|
if (unlikely(__pyx_v_aggregate_graph->neighbors == Py_None)) {
|
|
24082
24079
|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
|
|
24083
|
-
__PYX_ERR(0,
|
|
24080
|
+
__PYX_ERR(0, 275, __pyx_L1_error)
|
|
24084
24081
|
}
|
|
24085
|
-
|
|
24086
|
-
__Pyx_GOTREF(__pyx_t_1);
|
|
24087
|
-
__pyx_t_5 = __Pyx_PyDict_GetItem(__pyx_v_aggregate_graph->neighbors, __pyx_t_1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 274, __pyx_L1_error)
|
|
24082
|
+
__pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
24088
24083
|
__Pyx_GOTREF(__pyx_t_5);
|
|
24089
|
-
|
|
24090
|
-
__pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_5, __pyx_n_s_keys); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 274, __pyx_L1_error)
|
|
24084
|
+
__pyx_t_1 = __Pyx_PyDict_GetItem(__pyx_v_aggregate_graph->neighbors, __pyx_t_5); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
24091
24085
|
__Pyx_GOTREF(__pyx_t_1);
|
|
24092
24086
|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
24093
|
-
__pyx_t_5 =
|
|
24087
|
+
__pyx_t_5 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_keys); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
24088
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
24089
|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
24090
|
+
__pyx_t_1 = NULL;
|
|
24094
24091
|
__pyx_t_4 = 0;
|
|
24095
24092
|
#if CYTHON_UNPACK_METHODS
|
|
24096
|
-
if (likely(PyMethod_Check(
|
|
24097
|
-
|
|
24098
|
-
if (likely(
|
|
24099
|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
24100
|
-
__Pyx_INCREF(
|
|
24093
|
+
if (likely(PyMethod_Check(__pyx_t_5))) {
|
|
24094
|
+
__pyx_t_1 = PyMethod_GET_SELF(__pyx_t_5);
|
|
24095
|
+
if (likely(__pyx_t_1)) {
|
|
24096
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_5);
|
|
24097
|
+
__Pyx_INCREF(__pyx_t_1);
|
|
24101
24098
|
__Pyx_INCREF(function);
|
|
24102
|
-
__Pyx_DECREF_SET(
|
|
24099
|
+
__Pyx_DECREF_SET(__pyx_t_5, function);
|
|
24103
24100
|
__pyx_t_4 = 1;
|
|
24104
24101
|
}
|
|
24105
24102
|
}
|
|
24106
24103
|
#endif
|
|
24107
24104
|
{
|
|
24108
|
-
PyObject *__pyx_callargs[2] = {
|
|
24109
|
-
|
|
24110
|
-
__Pyx_XDECREF(
|
|
24111
|
-
if (unlikely(!
|
|
24112
|
-
__Pyx_GOTREF(
|
|
24113
|
-
__Pyx_DECREF(
|
|
24114
|
-
}
|
|
24115
|
-
|
|
24116
|
-
__Pyx_GOTREF(__pyx_t_1);
|
|
24117
|
-
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
24118
|
-
__pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 274, __pyx_L1_error)
|
|
24119
|
-
__Pyx_GOTREF(__pyx_t_3);
|
|
24120
|
-
__pyx_t_5 = PySet_New(0); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 274, __pyx_L1_error)
|
|
24105
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_1, NULL};
|
|
24106
|
+
__pyx_t_2 = __Pyx_PyObject_FastCall(__pyx_t_5, __pyx_callargs+1-__pyx_t_4, 0+__pyx_t_4);
|
|
24107
|
+
__Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
24108
|
+
if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
24109
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
24110
|
+
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
24111
|
+
}
|
|
24112
|
+
__pyx_t_5 = PySet_New(__pyx_t_2); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
24121
24113
|
__Pyx_GOTREF(__pyx_t_5);
|
|
24122
|
-
|
|
24123
|
-
|
|
24124
|
-
|
|
24125
|
-
|
|
24126
|
-
|
|
24114
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
24115
|
+
__pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
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|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
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|
+
__pyx_t_1 = PySet_New(0); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
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|
+
__Pyx_GOTREF(__pyx_t_1);
|
|
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|
+
if (PySet_Add(__pyx_t_1, __pyx_t_2) < 0) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
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|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
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|
+
__pyx_t_2 = PyNumber_Subtract(__pyx_t_5, __pyx_t_1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 275, __pyx_L1_error)
|
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|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
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|
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
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|
-
|
|
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|
-
|
|
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|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
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|
+
if (likely(PyList_CheckExact(__pyx_t_2)) || PyTuple_CheckExact(__pyx_t_2)) {
|
|
24126
|
+
__pyx_t_1 = __pyx_t_2; __Pyx_INCREF(__pyx_t_1);
|
|
24130
24127
|
__pyx_t_11 = 0;
|
|
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24128
|
__pyx_t_14 = NULL;
|
|
24132
24129
|
} else {
|
|
24133
|
-
__pyx_t_11 = -1;
|
|
24134
|
-
__Pyx_GOTREF(
|
|
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|
-
__pyx_t_14 = __Pyx_PyObject_GetIterNextFunc(
|
|
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|
+
__pyx_t_11 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
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|
+
__Pyx_GOTREF(__pyx_t_1);
|
|
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|
+
__pyx_t_14 = __Pyx_PyObject_GetIterNextFunc(__pyx_t_1); if (unlikely(!__pyx_t_14)) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
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|
}
|
|
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|
-
__Pyx_DECREF(
|
|
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|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
24138
24135
|
for (;;) {
|
|
24139
24136
|
if (likely(!__pyx_t_14)) {
|
|
24140
|
-
if (likely(PyList_CheckExact(
|
|
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|
+
if (likely(PyList_CheckExact(__pyx_t_1))) {
|
|
24141
24138
|
{
|
|
24142
|
-
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(
|
|
24139
|
+
Py_ssize_t __pyx_temp = __Pyx_PyList_GET_SIZE(__pyx_t_1);
|
|
24143
24140
|
#if !CYTHON_ASSUME_SAFE_MACROS
|
|
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|
-
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0,
|
|
24141
|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
24145
24142
|
#endif
|
|
24146
24143
|
if (__pyx_t_11 >= __pyx_temp) break;
|
|
24147
24144
|
}
|
|
24148
24145
|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
24149
|
-
|
|
24146
|
+
__pyx_t_2 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_11); __Pyx_INCREF(__pyx_t_2); __pyx_t_11++; if (unlikely((0 < 0))) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
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24147
|
#else
|
|
24151
|
-
|
|
24152
|
-
__Pyx_GOTREF(
|
|
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|
+
__pyx_t_2 = __Pyx_PySequence_ITEM(__pyx_t_1, __pyx_t_11); __pyx_t_11++; if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
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|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
24153
24150
|
#endif
|
|
24154
24151
|
} else {
|
|
24155
24152
|
{
|
|
24156
|
-
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(
|
|
24153
|
+
Py_ssize_t __pyx_temp = __Pyx_PyTuple_GET_SIZE(__pyx_t_1);
|
|
24157
24154
|
#if !CYTHON_ASSUME_SAFE_MACROS
|
|
24158
|
-
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0,
|
|
24155
|
+
if (unlikely((__pyx_temp < 0))) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
24159
24156
|
#endif
|
|
24160
24157
|
if (__pyx_t_11 >= __pyx_temp) break;
|
|
24161
24158
|
}
|
|
24162
24159
|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
24163
|
-
|
|
24160
|
+
__pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_11); __Pyx_INCREF(__pyx_t_2); __pyx_t_11++; if (unlikely((0 < 0))) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
24164
24161
|
#else
|
|
24165
|
-
|
|
24166
|
-
__Pyx_GOTREF(
|
|
24162
|
+
__pyx_t_2 = __Pyx_PySequence_ITEM(__pyx_t_1, __pyx_t_11); __pyx_t_11++; if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
24163
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
24167
24164
|
#endif
|
|
24168
24165
|
}
|
|
24169
24166
|
} else {
|
|
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|
-
|
|
24171
|
-
if (unlikely(!
|
|
24167
|
+
__pyx_t_2 = __pyx_t_14(__pyx_t_1);
|
|
24168
|
+
if (unlikely(!__pyx_t_2)) {
|
|
24172
24169
|
PyObject* exc_type = PyErr_Occurred();
|
|
24173
24170
|
if (exc_type) {
|
|
24174
24171
|
if (likely(__Pyx_PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
|
|
24175
|
-
else __PYX_ERR(0,
|
|
24172
|
+
else __PYX_ERR(0, 275, __pyx_L1_error)
|
|
24176
24173
|
}
|
|
24177
24174
|
break;
|
|
24178
24175
|
}
|
|
24179
|
-
__Pyx_GOTREF(
|
|
24176
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
24180
24177
|
}
|
|
24181
|
-
__pyx_t_4 = __Pyx_PyInt_As_int(
|
|
24182
|
-
__Pyx_DECREF(
|
|
24178
|
+
__pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_2); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 275, __pyx_L1_error)
|
|
24179
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
24183
24180
|
__pyx_v_neighbor = __pyx_t_4;
|
|
24184
24181
|
|
|
24185
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24182
|
+
/* "sknetwork/hierarchy/paris.pyx":276
|
|
24186
24183
|
* max_sim = -float("inf")
|
|
24187
24184
|
* for neighbor in set(aggregate_graph.neighbors[node].keys()) - {node}:
|
|
24188
24185
|
* sim = aggregate_graph.similarity(node, neighbor) # <<<<<<<<<<<<<<
|
|
24189
24186
|
* if sim > max_sim:
|
|
24190
24187
|
* nearest_neighbor = neighbor
|
|
24191
24188
|
*/
|
|
24192
|
-
__pyx_t_15 = ((struct __pyx_vtabstruct_9sknetwork_9hierarchy_5paris_AggregateGraph *)__pyx_v_aggregate_graph->__pyx_vtab)->similarity(__pyx_v_aggregate_graph, __pyx_v_node, __pyx_v_neighbor); if (unlikely(PyErr_Occurred())) __PYX_ERR(0,
|
|
24189
|
+
__pyx_t_15 = ((struct __pyx_vtabstruct_9sknetwork_9hierarchy_5paris_AggregateGraph *)__pyx_v_aggregate_graph->__pyx_vtab)->similarity(__pyx_v_aggregate_graph, __pyx_v_node, __pyx_v_neighbor); if (unlikely(PyErr_Occurred())) __PYX_ERR(0, 276, __pyx_L1_error)
|
|
24193
24190
|
__pyx_v_sim = __pyx_t_15;
|
|
24194
24191
|
|
|
24195
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24192
|
+
/* "sknetwork/hierarchy/paris.pyx":277
|
|
24196
24193
|
* for neighbor in set(aggregate_graph.neighbors[node].keys()) - {node}:
|
|
24197
24194
|
* sim = aggregate_graph.similarity(node, neighbor)
|
|
24198
24195
|
* if sim > max_sim: # <<<<<<<<<<<<<<
|
|
@@ -24202,7 +24199,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24202
24199
|
__pyx_t_8 = (__pyx_v_sim > __pyx_v_max_sim);
|
|
24203
24200
|
if (__pyx_t_8) {
|
|
24204
24201
|
|
|
24205
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24202
|
+
/* "sknetwork/hierarchy/paris.pyx":278
|
|
24206
24203
|
* sim = aggregate_graph.similarity(node, neighbor)
|
|
24207
24204
|
* if sim > max_sim:
|
|
24208
24205
|
* nearest_neighbor = neighbor # <<<<<<<<<<<<<<
|
|
@@ -24211,7 +24208,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24211
24208
|
*/
|
|
24212
24209
|
__pyx_v_nearest_neighbor = __pyx_v_neighbor;
|
|
24213
24210
|
|
|
24214
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24211
|
+
/* "sknetwork/hierarchy/paris.pyx":279
|
|
24215
24212
|
* if sim > max_sim:
|
|
24216
24213
|
* nearest_neighbor = neighbor
|
|
24217
24214
|
* max_sim = sim # <<<<<<<<<<<<<<
|
|
@@ -24220,7 +24217,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24220
24217
|
*/
|
|
24221
24218
|
__pyx_v_max_sim = __pyx_v_sim;
|
|
24222
24219
|
|
|
24223
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24220
|
+
/* "sknetwork/hierarchy/paris.pyx":277
|
|
24224
24221
|
* for neighbor in set(aggregate_graph.neighbors[node].keys()) - {node}:
|
|
24225
24222
|
* sim = aggregate_graph.similarity(node, neighbor)
|
|
24226
24223
|
* if sim > max_sim: # <<<<<<<<<<<<<<
|
|
@@ -24230,7 +24227,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24230
24227
|
goto __pyx_L17;
|
|
24231
24228
|
}
|
|
24232
24229
|
|
|
24233
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24230
|
+
/* "sknetwork/hierarchy/paris.pyx":280
|
|
24234
24231
|
* nearest_neighbor = neighbor
|
|
24235
24232
|
* max_sim = sim
|
|
24236
24233
|
* elif sim == max_sim: # <<<<<<<<<<<<<<
|
|
@@ -24240,7 +24237,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24240
24237
|
__pyx_t_8 = (__pyx_v_sim == __pyx_v_max_sim);
|
|
24241
24238
|
if (__pyx_t_8) {
|
|
24242
24239
|
|
|
24243
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24240
|
+
/* "sknetwork/hierarchy/paris.pyx":281
|
|
24244
24241
|
* max_sim = sim
|
|
24245
24242
|
* elif sim == max_sim:
|
|
24246
24243
|
* nearest_neighbor = min(neighbor, nearest_neighbor) # <<<<<<<<<<<<<<
|
|
@@ -24257,7 +24254,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24257
24254
|
}
|
|
24258
24255
|
__pyx_v_nearest_neighbor = __pyx_t_16;
|
|
24259
24256
|
|
|
24260
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24257
|
+
/* "sknetwork/hierarchy/paris.pyx":280
|
|
24261
24258
|
* nearest_neighbor = neighbor
|
|
24262
24259
|
* max_sim = sim
|
|
24263
24260
|
* elif sim == max_sim: # <<<<<<<<<<<<<<
|
|
@@ -24267,7 +24264,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24267
24264
|
}
|
|
24268
24265
|
__pyx_L17:;
|
|
24269
24266
|
|
|
24270
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24267
|
+
/* "sknetwork/hierarchy/paris.pyx":275
|
|
24271
24268
|
* if set(aggregate_graph.neighbors[node].keys()) - {node}:
|
|
24272
24269
|
* max_sim = -float("inf")
|
|
24273
24270
|
* for neighbor in set(aggregate_graph.neighbors[node].keys()) - {node}: # <<<<<<<<<<<<<<
|
|
@@ -24275,9 +24272,9 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24275
24272
|
* if sim > max_sim:
|
|
24276
24273
|
*/
|
|
24277
24274
|
}
|
|
24278
|
-
__Pyx_DECREF(
|
|
24275
|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
24279
24276
|
|
|
24280
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24277
|
+
/* "sknetwork/hierarchy/paris.pyx":282
|
|
24281
24278
|
* elif sim == max_sim:
|
|
24282
24279
|
* nearest_neighbor = min(neighbor, nearest_neighbor)
|
|
24283
24280
|
* if chain.size(): # <<<<<<<<<<<<<<
|
|
@@ -24287,7 +24284,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24287
24284
|
__pyx_t_8 = (__pyx_v_chain.size() != 0);
|
|
24288
24285
|
if (__pyx_t_8) {
|
|
24289
24286
|
|
|
24290
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24287
|
+
/* "sknetwork/hierarchy/paris.pyx":283
|
|
24291
24288
|
* nearest_neighbor = min(neighbor, nearest_neighbor)
|
|
24292
24289
|
* if chain.size():
|
|
24293
24290
|
* nearest_neighbor_last = chain[chain.size() - 1] # <<<<<<<<<<<<<<
|
|
@@ -24296,7 +24293,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24296
24293
|
*/
|
|
24297
24294
|
__pyx_v_nearest_neighbor_last = (__pyx_v_chain[(__pyx_v_chain.size() - 1)]);
|
|
24298
24295
|
|
|
24299
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24296
|
+
/* "sknetwork/hierarchy/paris.pyx":284
|
|
24300
24297
|
* if chain.size():
|
|
24301
24298
|
* nearest_neighbor_last = chain[chain.size() - 1]
|
|
24302
24299
|
* chain.pop_back() # <<<<<<<<<<<<<<
|
|
@@ -24305,7 +24302,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24305
24302
|
*/
|
|
24306
24303
|
__pyx_v_chain.pop_back();
|
|
24307
24304
|
|
|
24308
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24305
|
+
/* "sknetwork/hierarchy/paris.pyx":285
|
|
24309
24306
|
* nearest_neighbor_last = chain[chain.size() - 1]
|
|
24310
24307
|
* chain.pop_back()
|
|
24311
24308
|
* if nearest_neighbor_last == nearest_neighbor: # <<<<<<<<<<<<<<
|
|
@@ -24315,7 +24312,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24315
24312
|
__pyx_t_8 = (__pyx_v_nearest_neighbor_last == __pyx_v_nearest_neighbor);
|
|
24316
24313
|
if (__pyx_t_8) {
|
|
24317
24314
|
|
|
24318
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24315
|
+
/* "sknetwork/hierarchy/paris.pyx":286
|
|
24319
24316
|
* chain.pop_back()
|
|
24320
24317
|
* if nearest_neighbor_last == nearest_neighbor:
|
|
24321
24318
|
* size = aggregate_graph.cluster_sizes[node] + aggregate_graph.cluster_sizes[nearest_neighbor] # <<<<<<<<<<<<<<
|
|
@@ -24324,75 +24321,75 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24324
24321
|
*/
|
|
24325
24322
|
if (unlikely(__pyx_v_aggregate_graph->cluster_sizes == Py_None)) {
|
|
24326
24323
|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
|
|
24327
|
-
__PYX_ERR(0,
|
|
24324
|
+
__PYX_ERR(0, 286, __pyx_L1_error)
|
|
24328
24325
|
}
|
|
24329
|
-
|
|
24330
|
-
__Pyx_GOTREF(
|
|
24331
|
-
|
|
24332
|
-
__Pyx_GOTREF(
|
|
24333
|
-
__Pyx_DECREF(
|
|
24326
|
+
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__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
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-
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-
/* "sknetwork/hierarchy/paris.pyx":
|
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|
+
/* "sknetwork/hierarchy/paris.pyx":287
|
|
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24348
|
* if nearest_neighbor_last == nearest_neighbor:
|
|
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24349
|
* size = aggregate_graph.cluster_sizes[node] + aggregate_graph.cluster_sizes[nearest_neighbor]
|
|
24353
24350
|
* dendrogram.append([node, nearest_neighbor, 1. / max_sim, size]) # <<<<<<<<<<<<<<
|
|
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24351
|
* aggregate_graph.merge(node, nearest_neighbor)
|
|
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24352
|
* else:
|
|
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24353
|
*/
|
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|
-
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|
-
__Pyx_GOTREF(__pyx_t_5);
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-
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__pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 287, __pyx_L1_error)
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__Pyx_GOTREF(__pyx_t_1);
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|
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__Pyx_GOTREF(__pyx_t_5);
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|
if (unlikely(__pyx_v_max_sim == 0)) {
|
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|
PyErr_SetString(PyExc_ZeroDivisionError, "float division");
|
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-
__PYX_ERR(0,
|
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-
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|
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__pyx_t_3 = PyList_New(4); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 287, __pyx_L1_error)
|
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|
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|
__Pyx_GIVEREF(__pyx_t_1);
|
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|
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if (__Pyx_PyList_SET_ITEM(
|
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|
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|
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|
-
if (__Pyx_PyList_SET_ITEM(
|
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if (__Pyx_PyList_SET_ITEM(__pyx_t_3, 0, __pyx_t_1)) __PYX_ERR(0, 287, __pyx_L1_error);
|
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|
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|
|
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|
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if (__Pyx_PyList_SET_ITEM(__pyx_t_3, 1, __pyx_t_5)) __PYX_ERR(0, 287, __pyx_L1_error);
|
|
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|
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__Pyx_GIVEREF(__pyx_t_2);
|
|
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|
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if (__Pyx_PyList_SET_ITEM(__pyx_t_3, 2, __pyx_t_2)) __PYX_ERR(0, 287, __pyx_L1_error);
|
|
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|
__Pyx_INCREF(__pyx_v_size);
|
|
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|
__Pyx_GIVEREF(__pyx_v_size);
|
|
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|
-
if (__Pyx_PyList_SET_ITEM(
|
|
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|
-
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|
|
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|
+
if (__Pyx_PyList_SET_ITEM(__pyx_t_3, 3, __pyx_v_size)) __PYX_ERR(0, 287, __pyx_L1_error);
|
|
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|
__pyx_t_1 = 0;
|
|
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|
-
|
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|
-
|
|
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|
-
|
|
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|
+
__pyx_t_5 = 0;
|
|
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|
+
__pyx_t_2 = 0;
|
|
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|
+
__pyx_t_17 = __Pyx_PyObject_Append(__pyx_v_dendrogram, __pyx_t_3); if (unlikely(__pyx_t_17 == ((int)-1))) __PYX_ERR(0, 287, __pyx_L1_error)
|
|
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|
+
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
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24380
|
|
|
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|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
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|
+
/* "sknetwork/hierarchy/paris.pyx":288
|
|
24385
24382
|
* size = aggregate_graph.cluster_sizes[node] + aggregate_graph.cluster_sizes[nearest_neighbor]
|
|
24386
24383
|
* dendrogram.append([node, nearest_neighbor, 1. / max_sim, size])
|
|
24387
24384
|
* aggregate_graph.merge(node, nearest_neighbor) # <<<<<<<<<<<<<<
|
|
24388
24385
|
* else:
|
|
24389
24386
|
* chain.push_back(nearest_neighbor_last)
|
|
24390
24387
|
*/
|
|
24391
|
-
|
|
24392
|
-
__Pyx_GOTREF(
|
|
24393
|
-
__Pyx_DECREF(
|
|
24388
|
+
__pyx_t_3 = ((PyObject *)((struct __pyx_vtabstruct_9sknetwork_9hierarchy_5paris_AggregateGraph *)__pyx_v_aggregate_graph->__pyx_vtab)->merge(__pyx_v_aggregate_graph, __pyx_v_node, __pyx_v_nearest_neighbor, 0)); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 288, __pyx_L1_error)
|
|
24389
|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
24390
|
+
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
24394
24391
|
|
|
24395
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24392
|
+
/* "sknetwork/hierarchy/paris.pyx":285
|
|
24396
24393
|
* nearest_neighbor_last = chain[chain.size() - 1]
|
|
24397
24394
|
* chain.pop_back()
|
|
24398
24395
|
* if nearest_neighbor_last == nearest_neighbor: # <<<<<<<<<<<<<<
|
|
@@ -24402,7 +24399,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24402
24399
|
goto __pyx_L20;
|
|
24403
24400
|
}
|
|
24404
24401
|
|
|
24405
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24402
|
+
/* "sknetwork/hierarchy/paris.pyx":290
|
|
24406
24403
|
* aggregate_graph.merge(node, nearest_neighbor)
|
|
24407
24404
|
* else:
|
|
24408
24405
|
* chain.push_back(nearest_neighbor_last) # <<<<<<<<<<<<<<
|
|
@@ -24414,10 +24411,10 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24414
24411
|
__pyx_v_chain.push_back(__pyx_v_nearest_neighbor_last);
|
|
24415
24412
|
} catch(...) {
|
|
24416
24413
|
__Pyx_CppExn2PyErr();
|
|
24417
|
-
__PYX_ERR(0,
|
|
24414
|
+
__PYX_ERR(0, 290, __pyx_L1_error)
|
|
24418
24415
|
}
|
|
24419
24416
|
|
|
24420
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24417
|
+
/* "sknetwork/hierarchy/paris.pyx":291
|
|
24421
24418
|
* else:
|
|
24422
24419
|
* chain.push_back(nearest_neighbor_last)
|
|
24423
24420
|
* chain.push_back(node) # <<<<<<<<<<<<<<
|
|
@@ -24428,10 +24425,10 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24428
24425
|
__pyx_v_chain.push_back(__pyx_v_node);
|
|
24429
24426
|
} catch(...) {
|
|
24430
24427
|
__Pyx_CppExn2PyErr();
|
|
24431
|
-
__PYX_ERR(0,
|
|
24428
|
+
__PYX_ERR(0, 291, __pyx_L1_error)
|
|
24432
24429
|
}
|
|
24433
24430
|
|
|
24434
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24431
|
+
/* "sknetwork/hierarchy/paris.pyx":292
|
|
24435
24432
|
* chain.push_back(nearest_neighbor_last)
|
|
24436
24433
|
* chain.push_back(node)
|
|
24437
24434
|
* chain.push_back(nearest_neighbor) # <<<<<<<<<<<<<<
|
|
@@ -24442,12 +24439,12 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24442
24439
|
__pyx_v_chain.push_back(__pyx_v_nearest_neighbor);
|
|
24443
24440
|
} catch(...) {
|
|
24444
24441
|
__Pyx_CppExn2PyErr();
|
|
24445
|
-
__PYX_ERR(0,
|
|
24442
|
+
__PYX_ERR(0, 292, __pyx_L1_error)
|
|
24446
24443
|
}
|
|
24447
24444
|
}
|
|
24448
24445
|
__pyx_L20:;
|
|
24449
24446
|
|
|
24450
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24447
|
+
/* "sknetwork/hierarchy/paris.pyx":282
|
|
24451
24448
|
* elif sim == max_sim:
|
|
24452
24449
|
* nearest_neighbor = min(neighbor, nearest_neighbor)
|
|
24453
24450
|
* if chain.size(): # <<<<<<<<<<<<<<
|
|
@@ -24457,7 +24454,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24457
24454
|
goto __pyx_L19;
|
|
24458
24455
|
}
|
|
24459
24456
|
|
|
24460
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24457
|
+
/* "sknetwork/hierarchy/paris.pyx":294
|
|
24461
24458
|
* chain.push_back(nearest_neighbor)
|
|
24462
24459
|
* else:
|
|
24463
24460
|
* chain.push_back(node) # <<<<<<<<<<<<<<
|
|
@@ -24469,10 +24466,10 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24469
24466
|
__pyx_v_chain.push_back(__pyx_v_node);
|
|
24470
24467
|
} catch(...) {
|
|
24471
24468
|
__Pyx_CppExn2PyErr();
|
|
24472
|
-
__PYX_ERR(0,
|
|
24469
|
+
__PYX_ERR(0, 294, __pyx_L1_error)
|
|
24473
24470
|
}
|
|
24474
24471
|
|
|
24475
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24472
|
+
/* "sknetwork/hierarchy/paris.pyx":295
|
|
24476
24473
|
* else:
|
|
24477
24474
|
* chain.push_back(node)
|
|
24478
24475
|
* chain.push_back(nearest_neighbor) # <<<<<<<<<<<<<<
|
|
@@ -24483,12 +24480,12 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24483
24480
|
__pyx_v_chain.push_back(__pyx_v_nearest_neighbor);
|
|
24484
24481
|
} catch(...) {
|
|
24485
24482
|
__Pyx_CppExn2PyErr();
|
|
24486
|
-
__PYX_ERR(0,
|
|
24483
|
+
__PYX_ERR(0, 295, __pyx_L1_error)
|
|
24487
24484
|
}
|
|
24488
24485
|
}
|
|
24489
24486
|
__pyx_L19:;
|
|
24490
24487
|
|
|
24491
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24488
|
+
/* "sknetwork/hierarchy/paris.pyx":273
|
|
24492
24489
|
* node = chain[chain.size() - 1]
|
|
24493
24490
|
* chain.pop_back()
|
|
24494
24491
|
* if set(aggregate_graph.neighbors[node].keys()) - {node}: # <<<<<<<<<<<<<<
|
|
@@ -24498,7 +24495,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24498
24495
|
goto __pyx_L14;
|
|
24499
24496
|
}
|
|
24500
24497
|
|
|
24501
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24498
|
+
/* "sknetwork/hierarchy/paris.pyx":297
|
|
24502
24499
|
* chain.push_back(nearest_neighbor)
|
|
24503
24500
|
* else:
|
|
24504
24501
|
* connected_components.push_back((node, aggregate_graph.cluster_sizes[node])) # <<<<<<<<<<<<<<
|
|
@@ -24508,25 +24505,25 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24508
24505
|
/*else*/ {
|
|
24509
24506
|
if (unlikely(__pyx_v_aggregate_graph->cluster_sizes == Py_None)) {
|
|
24510
24507
|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
|
|
24511
|
-
__PYX_ERR(0,
|
|
24508
|
+
__PYX_ERR(0, 297, __pyx_L1_error)
|
|
24512
24509
|
}
|
|
24513
|
-
|
|
24514
|
-
__Pyx_GOTREF(__pyx_t_2);
|
|
24515
|
-
__pyx_t_3 = __Pyx_PyDict_GetItem(__pyx_v_aggregate_graph->cluster_sizes, __pyx_t_2); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 296, __pyx_L1_error)
|
|
24510
|
+
__pyx_t_3 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 297, __pyx_L1_error)
|
|
24516
24511
|
__Pyx_GOTREF(__pyx_t_3);
|
|
24517
|
-
|
|
24518
|
-
|
|
24512
|
+
__pyx_t_2 = __Pyx_PyDict_GetItem(__pyx_v_aggregate_graph->cluster_sizes, __pyx_t_3); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 297, __pyx_L1_error)
|
|
24513
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
24519
24514
|
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
24515
|
+
__pyx_t_16 = __Pyx_PyInt_As_int(__pyx_t_2); if (unlikely((__pyx_t_16 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 297, __pyx_L1_error)
|
|
24516
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
24520
24517
|
__pyx_t_18.f0 = __pyx_v_node;
|
|
24521
24518
|
__pyx_t_18.f1 = __pyx_t_16;
|
|
24522
24519
|
try {
|
|
24523
24520
|
__pyx_v_connected_components.push_back(__pyx_t_18);
|
|
24524
24521
|
} catch(...) {
|
|
24525
24522
|
__Pyx_CppExn2PyErr();
|
|
24526
|
-
__PYX_ERR(0,
|
|
24523
|
+
__PYX_ERR(0, 297, __pyx_L1_error)
|
|
24527
24524
|
}
|
|
24528
24525
|
|
|
24529
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24526
|
+
/* "sknetwork/hierarchy/paris.pyx":298
|
|
24530
24527
|
* else:
|
|
24531
24528
|
* connected_components.push_back((node, aggregate_graph.cluster_sizes[node]))
|
|
24532
24529
|
* del aggregate_graph.cluster_sizes[node] # <<<<<<<<<<<<<<
|
|
@@ -24535,18 +24532,18 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24535
24532
|
*/
|
|
24536
24533
|
if (unlikely(__pyx_v_aggregate_graph->cluster_sizes == Py_None)) {
|
|
24537
24534
|
PyErr_SetString(PyExc_TypeError, "'NoneType' object is not subscriptable");
|
|
24538
|
-
__PYX_ERR(0,
|
|
24535
|
+
__PYX_ERR(0, 298, __pyx_L1_error)
|
|
24539
24536
|
}
|
|
24540
|
-
|
|
24541
|
-
__Pyx_GOTREF(
|
|
24542
|
-
if (unlikely((PyDict_DelItem(__pyx_v_aggregate_graph->cluster_sizes,
|
|
24543
|
-
__Pyx_DECREF(
|
|
24537
|
+
__pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 298, __pyx_L1_error)
|
|
24538
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
24539
|
+
if (unlikely((PyDict_DelItem(__pyx_v_aggregate_graph->cluster_sizes, __pyx_t_2) < 0))) __PYX_ERR(0, 298, __pyx_L1_error)
|
|
24540
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
24544
24541
|
}
|
|
24545
24542
|
__pyx_L14:;
|
|
24546
24543
|
}
|
|
24547
24544
|
}
|
|
24548
24545
|
|
|
24549
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24546
|
+
/* "sknetwork/hierarchy/paris.pyx":300
|
|
24550
24547
|
* del aggregate_graph.cluster_sizes[node]
|
|
24551
24548
|
*
|
|
24552
24549
|
* node, cluster_size = connected_components[connected_components.size() - 1] # <<<<<<<<<<<<<<
|
|
@@ -24559,7 +24556,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24559
24556
|
__pyx_v_node = __pyx_t_16;
|
|
24560
24557
|
__pyx_v_cluster_size = __pyx_t_4;
|
|
24561
24558
|
|
|
24562
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24559
|
+
/* "sknetwork/hierarchy/paris.pyx":301
|
|
24563
24560
|
*
|
|
24564
24561
|
* node, cluster_size = connected_components[connected_components.size() - 1]
|
|
24565
24562
|
* connected_components.pop_back() # <<<<<<<<<<<<<<
|
|
@@ -24568,7 +24565,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24568
24565
|
*/
|
|
24569
24566
|
__pyx_v_connected_components.pop_back();
|
|
24570
24567
|
|
|
24571
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24568
|
+
/* "sknetwork/hierarchy/paris.pyx":302
|
|
24572
24569
|
* node, cluster_size = connected_components[connected_components.size() - 1]
|
|
24573
24570
|
* connected_components.pop_back()
|
|
24574
24571
|
* for next_node, next_cluster_size in connected_components: # <<<<<<<<<<<<<<
|
|
@@ -24580,62 +24577,62 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24580
24577
|
if (!(__pyx_t_19 != __pyx_v_connected_components.end())) break;
|
|
24581
24578
|
__pyx_t_18 = *__pyx_t_19;
|
|
24582
24579
|
++__pyx_t_19;
|
|
24583
|
-
|
|
24584
|
-
__Pyx_GOTREF(
|
|
24585
|
-
if ((likely(PyTuple_CheckExact(
|
|
24586
|
-
PyObject* sequence =
|
|
24580
|
+
__pyx_t_2 = __pyx_convert__to_py___pyx_ctuple_int__and_int(__pyx_t_18); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 302, __pyx_L1_error)
|
|
24581
|
+
__Pyx_GOTREF(__pyx_t_2);
|
|
24582
|
+
if ((likely(PyTuple_CheckExact(__pyx_t_2))) || (PyList_CheckExact(__pyx_t_2))) {
|
|
24583
|
+
PyObject* sequence = __pyx_t_2;
|
|
24587
24584
|
Py_ssize_t size = __Pyx_PySequence_SIZE(sequence);
|
|
24588
24585
|
if (unlikely(size != 2)) {
|
|
24589
24586
|
if (size > 2) __Pyx_RaiseTooManyValuesError(2);
|
|
24590
24587
|
else if (size >= 0) __Pyx_RaiseNeedMoreValuesError(size);
|
|
24591
|
-
__PYX_ERR(0,
|
|
24588
|
+
__PYX_ERR(0, 302, __pyx_L1_error)
|
|
24592
24589
|
}
|
|
24593
24590
|
#if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
|
|
24594
24591
|
if (likely(PyTuple_CheckExact(sequence))) {
|
|
24595
|
-
|
|
24596
|
-
|
|
24592
|
+
__pyx_t_3 = PyTuple_GET_ITEM(sequence, 0);
|
|
24593
|
+
__pyx_t_5 = PyTuple_GET_ITEM(sequence, 1);
|
|
24597
24594
|
} else {
|
|
24598
|
-
|
|
24599
|
-
|
|
24595
|
+
__pyx_t_3 = PyList_GET_ITEM(sequence, 0);
|
|
24596
|
+
__pyx_t_5 = PyList_GET_ITEM(sequence, 1);
|
|
24600
24597
|
}
|
|
24601
|
-
__Pyx_INCREF(
|
|
24602
|
-
__Pyx_INCREF(
|
|
24598
|
+
__Pyx_INCREF(__pyx_t_3);
|
|
24599
|
+
__Pyx_INCREF(__pyx_t_5);
|
|
24603
24600
|
#else
|
|
24604
|
-
|
|
24605
|
-
__Pyx_GOTREF(
|
|
24606
|
-
|
|
24607
|
-
__Pyx_GOTREF(
|
|
24601
|
+
__pyx_t_3 = PySequence_ITEM(sequence, 0); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 302, __pyx_L1_error)
|
|
24602
|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
24603
|
+
__pyx_t_5 = PySequence_ITEM(sequence, 1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 302, __pyx_L1_error)
|
|
24604
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
24608
24605
|
#endif
|
|
24609
|
-
__Pyx_DECREF(
|
|
24606
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
24610
24607
|
} else {
|
|
24611
24608
|
Py_ssize_t index = -1;
|
|
24612
|
-
|
|
24613
|
-
__Pyx_GOTREF(__pyx_t_5);
|
|
24614
|
-
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
24615
|
-
__pyx_t_6 = __Pyx_PyObject_GetIterNextFunc(__pyx_t_5);
|
|
24616
|
-
index = 0; __pyx_t_2 = __pyx_t_6(__pyx_t_5); if (unlikely(!__pyx_t_2)) goto __pyx_L23_unpacking_failed;
|
|
24617
|
-
__Pyx_GOTREF(__pyx_t_2);
|
|
24618
|
-
index = 1; __pyx_t_1 = __pyx_t_6(__pyx_t_5); if (unlikely(!__pyx_t_1)) goto __pyx_L23_unpacking_failed;
|
|
24609
|
+
__pyx_t_1 = PyObject_GetIter(__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 302, __pyx_L1_error)
|
|
24619
24610
|
__Pyx_GOTREF(__pyx_t_1);
|
|
24620
|
-
|
|
24611
|
+
__Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
|
|
24612
|
+
__pyx_t_6 = __Pyx_PyObject_GetIterNextFunc(__pyx_t_1);
|
|
24613
|
+
index = 0; __pyx_t_3 = __pyx_t_6(__pyx_t_1); if (unlikely(!__pyx_t_3)) goto __pyx_L23_unpacking_failed;
|
|
24614
|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
24615
|
+
index = 1; __pyx_t_5 = __pyx_t_6(__pyx_t_1); if (unlikely(!__pyx_t_5)) goto __pyx_L23_unpacking_failed;
|
|
24616
|
+
__Pyx_GOTREF(__pyx_t_5);
|
|
24617
|
+
if (__Pyx_IternextUnpackEndCheck(__pyx_t_6(__pyx_t_1), 2) < 0) __PYX_ERR(0, 302, __pyx_L1_error)
|
|
24621
24618
|
__pyx_t_6 = NULL;
|
|
24622
|
-
__Pyx_DECREF(
|
|
24619
|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
24623
24620
|
goto __pyx_L24_unpacking_done;
|
|
24624
24621
|
__pyx_L23_unpacking_failed:;
|
|
24625
|
-
__Pyx_DECREF(
|
|
24622
|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
24626
24623
|
__pyx_t_6 = NULL;
|
|
24627
24624
|
if (__Pyx_IterFinish() == 0) __Pyx_RaiseNeedMoreValuesError(index);
|
|
24628
|
-
__PYX_ERR(0,
|
|
24625
|
+
__PYX_ERR(0, 302, __pyx_L1_error)
|
|
24629
24626
|
__pyx_L24_unpacking_done:;
|
|
24630
24627
|
}
|
|
24631
|
-
__pyx_t_4 = __Pyx_PyInt_As_int(
|
|
24632
|
-
__Pyx_DECREF(
|
|
24633
|
-
__pyx_t_16 = __Pyx_PyInt_As_int(
|
|
24634
|
-
__Pyx_DECREF(
|
|
24628
|
+
__pyx_t_4 = __Pyx_PyInt_As_int(__pyx_t_3); if (unlikely((__pyx_t_4 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 302, __pyx_L1_error)
|
|
24629
|
+
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
24630
|
+
__pyx_t_16 = __Pyx_PyInt_As_int(__pyx_t_5); if (unlikely((__pyx_t_16 == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 302, __pyx_L1_error)
|
|
24631
|
+
__Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
24635
24632
|
__pyx_v_next_node = __pyx_t_4;
|
|
24636
24633
|
__pyx_v_next_cluster_size = __pyx_t_16;
|
|
24637
24634
|
|
|
24638
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24635
|
+
/* "sknetwork/hierarchy/paris.pyx":303
|
|
24639
24636
|
* connected_components.pop_back()
|
|
24640
24637
|
* for next_node, next_cluster_size in connected_components:
|
|
24641
24638
|
* cluster_size += next_cluster_size # <<<<<<<<<<<<<<
|
|
@@ -24644,40 +24641,40 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24644
24641
|
*/
|
|
24645
24642
|
__pyx_v_cluster_size = (__pyx_v_cluster_size + __pyx_v_next_cluster_size);
|
|
24646
24643
|
|
|
24647
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24644
|
+
/* "sknetwork/hierarchy/paris.pyx":304
|
|
24648
24645
|
* for next_node, next_cluster_size in connected_components:
|
|
24649
24646
|
* cluster_size += next_cluster_size
|
|
24650
24647
|
* dendrogram.append([node, next_node, float("inf"), cluster_size]) # <<<<<<<<<<<<<<
|
|
24651
24648
|
* node = aggregate_graph.next_cluster
|
|
24652
24649
|
* aggregate_graph.next_cluster += 1
|
|
24653
24650
|
*/
|
|
24654
|
-
|
|
24655
|
-
__Pyx_GOTREF(__pyx_t_3);
|
|
24656
|
-
__pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_next_node); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 303, __pyx_L1_error)
|
|
24657
|
-
__Pyx_GOTREF(__pyx_t_1);
|
|
24658
|
-
__pyx_t_13 = __Pyx_PyUnicode_AsDouble(__pyx_n_u_inf); if (unlikely(__pyx_t_13 == ((double)((double)-1)) && PyErr_Occurred())) __PYX_ERR(0, 303, __pyx_L1_error)
|
|
24659
|
-
__pyx_t_2 = PyFloat_FromDouble(__pyx_t_13); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 303, __pyx_L1_error)
|
|
24651
|
+
__pyx_t_2 = __Pyx_PyInt_From_int(__pyx_v_node); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 304, __pyx_L1_error)
|
|
24660
24652
|
__Pyx_GOTREF(__pyx_t_2);
|
|
24661
|
-
__pyx_t_5 = __Pyx_PyInt_From_int(
|
|
24653
|
+
__pyx_t_5 = __Pyx_PyInt_From_int(__pyx_v_next_node); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 304, __pyx_L1_error)
|
|
24662
24654
|
__Pyx_GOTREF(__pyx_t_5);
|
|
24663
|
-
|
|
24655
|
+
__pyx_t_13 = __Pyx_PyUnicode_AsDouble(__pyx_n_u_inf); if (unlikely(__pyx_t_13 == ((double)((double)-1)) && PyErr_Occurred())) __PYX_ERR(0, 304, __pyx_L1_error)
|
|
24656
|
+
__pyx_t_3 = PyFloat_FromDouble(__pyx_t_13); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 304, __pyx_L1_error)
|
|
24657
|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
24658
|
+
__pyx_t_1 = __Pyx_PyInt_From_int(__pyx_v_cluster_size); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 304, __pyx_L1_error)
|
|
24659
|
+
__Pyx_GOTREF(__pyx_t_1);
|
|
24660
|
+
__pyx_t_9 = PyList_New(4); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 304, __pyx_L1_error)
|
|
24664
24661
|
__Pyx_GOTREF(__pyx_t_9);
|
|
24665
|
-
__Pyx_GIVEREF(__pyx_t_3);
|
|
24666
|
-
if (__Pyx_PyList_SET_ITEM(__pyx_t_9, 0, __pyx_t_3)) __PYX_ERR(0, 303, __pyx_L1_error);
|
|
24667
|
-
__Pyx_GIVEREF(__pyx_t_1);
|
|
24668
|
-
if (__Pyx_PyList_SET_ITEM(__pyx_t_9, 1, __pyx_t_1)) __PYX_ERR(0, 303, __pyx_L1_error);
|
|
24669
24662
|
__Pyx_GIVEREF(__pyx_t_2);
|
|
24670
|
-
if (__Pyx_PyList_SET_ITEM(__pyx_t_9,
|
|
24663
|
+
if (__Pyx_PyList_SET_ITEM(__pyx_t_9, 0, __pyx_t_2)) __PYX_ERR(0, 304, __pyx_L1_error);
|
|
24671
24664
|
__Pyx_GIVEREF(__pyx_t_5);
|
|
24672
|
-
if (__Pyx_PyList_SET_ITEM(__pyx_t_9,
|
|
24673
|
-
__pyx_t_3
|
|
24674
|
-
|
|
24665
|
+
if (__Pyx_PyList_SET_ITEM(__pyx_t_9, 1, __pyx_t_5)) __PYX_ERR(0, 304, __pyx_L1_error);
|
|
24666
|
+
__Pyx_GIVEREF(__pyx_t_3);
|
|
24667
|
+
if (__Pyx_PyList_SET_ITEM(__pyx_t_9, 2, __pyx_t_3)) __PYX_ERR(0, 304, __pyx_L1_error);
|
|
24668
|
+
__Pyx_GIVEREF(__pyx_t_1);
|
|
24669
|
+
if (__Pyx_PyList_SET_ITEM(__pyx_t_9, 3, __pyx_t_1)) __PYX_ERR(0, 304, __pyx_L1_error);
|
|
24675
24670
|
__pyx_t_2 = 0;
|
|
24676
24671
|
__pyx_t_5 = 0;
|
|
24677
|
-
|
|
24672
|
+
__pyx_t_3 = 0;
|
|
24673
|
+
__pyx_t_1 = 0;
|
|
24674
|
+
__pyx_t_17 = __Pyx_PyObject_Append(__pyx_v_dendrogram, __pyx_t_9); if (unlikely(__pyx_t_17 == ((int)-1))) __PYX_ERR(0, 304, __pyx_L1_error)
|
|
24678
24675
|
__Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
|
|
24679
24676
|
|
|
24680
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24677
|
+
/* "sknetwork/hierarchy/paris.pyx":305
|
|
24681
24678
|
* cluster_size += next_cluster_size
|
|
24682
24679
|
* dendrogram.append([node, next_node, float("inf"), cluster_size])
|
|
24683
24680
|
* node = aggregate_graph.next_cluster # <<<<<<<<<<<<<<
|
|
@@ -24687,7 +24684,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24687
24684
|
__pyx_t_16 = __pyx_v_aggregate_graph->next_cluster;
|
|
24688
24685
|
__pyx_v_node = __pyx_t_16;
|
|
24689
24686
|
|
|
24690
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24687
|
+
/* "sknetwork/hierarchy/paris.pyx":306
|
|
24691
24688
|
* dendrogram.append([node, next_node, float("inf"), cluster_size])
|
|
24692
24689
|
* node = aggregate_graph.next_cluster
|
|
24693
24690
|
* aggregate_graph.next_cluster += 1 # <<<<<<<<<<<<<<
|
|
@@ -24696,7 +24693,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24696
24693
|
*/
|
|
24697
24694
|
__pyx_v_aggregate_graph->next_cluster = (__pyx_v_aggregate_graph->next_cluster + 1);
|
|
24698
24695
|
|
|
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|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
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|
+
/* "sknetwork/hierarchy/paris.pyx":302
|
|
24700
24697
|
* node, cluster_size = connected_components[connected_components.size() - 1]
|
|
24701
24698
|
* connected_components.pop_back()
|
|
24702
24699
|
* for next_node, next_cluster_size in connected_components: # <<<<<<<<<<<<<<
|
|
@@ -24705,91 +24702,91 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
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24702
|
*/
|
|
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24703
|
}
|
|
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24704
|
|
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|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
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|
+
/* "sknetwork/hierarchy/paris.pyx":308
|
|
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24706
|
* aggregate_graph.next_cluster += 1
|
|
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24707
|
*
|
|
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24708
|
* dendrogram = np.array(dendrogram) # <<<<<<<<<<<<<<
|
|
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24709
|
* if self.reorder:
|
|
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24710
|
* dendrogram = reorder_dendrogram(dendrogram)
|
|
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24711
|
*/
|
|
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|
-
__Pyx_GetModuleGlobalName(
|
|
24716
|
-
__Pyx_GOTREF(
|
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|
-
|
|
24718
|
-
__Pyx_GOTREF(
|
|
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|
-
__Pyx_DECREF(
|
|
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|
-
|
|
24712
|
+
__Pyx_GetModuleGlobalName(__pyx_t_1, __pyx_n_s_np); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 308, __pyx_L1_error)
|
|
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|
+
__Pyx_GOTREF(__pyx_t_1);
|
|
24714
|
+
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_array); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 308, __pyx_L1_error)
|
|
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|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
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|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
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|
+
__pyx_t_1 = NULL;
|
|
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24718
|
__pyx_t_16 = 0;
|
|
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24719
|
#if CYTHON_UNPACK_METHODS
|
|
24723
|
-
if (unlikely(PyMethod_Check(
|
|
24724
|
-
|
|
24725
|
-
if (likely(
|
|
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|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
24727
|
-
__Pyx_INCREF(
|
|
24720
|
+
if (unlikely(PyMethod_Check(__pyx_t_3))) {
|
|
24721
|
+
__pyx_t_1 = PyMethod_GET_SELF(__pyx_t_3);
|
|
24722
|
+
if (likely(__pyx_t_1)) {
|
|
24723
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
|
|
24724
|
+
__Pyx_INCREF(__pyx_t_1);
|
|
24728
24725
|
__Pyx_INCREF(function);
|
|
24729
|
-
__Pyx_DECREF_SET(
|
|
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|
+
__Pyx_DECREF_SET(__pyx_t_3, function);
|
|
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24727
|
__pyx_t_16 = 1;
|
|
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24728
|
}
|
|
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24729
|
}
|
|
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24730
|
#endif
|
|
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24731
|
{
|
|
24735
|
-
PyObject *__pyx_callargs[2] = {
|
|
24736
|
-
__pyx_t_9 = __Pyx_PyObject_FastCall(
|
|
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|
-
__Pyx_XDECREF(
|
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24738
|
-
if (unlikely(!__pyx_t_9)) __PYX_ERR(0,
|
|
24732
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_1, __pyx_v_dendrogram};
|
|
24733
|
+
__pyx_t_9 = __Pyx_PyObject_FastCall(__pyx_t_3, __pyx_callargs+1-__pyx_t_16, 1+__pyx_t_16);
|
|
24734
|
+
__Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
24735
|
+
if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 308, __pyx_L1_error)
|
|
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24736
|
__Pyx_GOTREF(__pyx_t_9);
|
|
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|
-
__Pyx_DECREF(
|
|
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|
+
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
24741
24738
|
}
|
|
24742
24739
|
__Pyx_DECREF_SET(__pyx_v_dendrogram, __pyx_t_9);
|
|
24743
24740
|
__pyx_t_9 = 0;
|
|
24744
24741
|
|
|
24745
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24742
|
+
/* "sknetwork/hierarchy/paris.pyx":309
|
|
24746
24743
|
*
|
|
24747
24744
|
* dendrogram = np.array(dendrogram)
|
|
24748
24745
|
* if self.reorder: # <<<<<<<<<<<<<<
|
|
24749
24746
|
* dendrogram = reorder_dendrogram(dendrogram)
|
|
24750
24747
|
*
|
|
24751
24748
|
*/
|
|
24752
|
-
__pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_reorder); if (unlikely(!__pyx_t_9)) __PYX_ERR(0,
|
|
24749
|
+
__pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_reorder); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 309, __pyx_L1_error)
|
|
24753
24750
|
__Pyx_GOTREF(__pyx_t_9);
|
|
24754
|
-
__pyx_t_8 = __Pyx_PyObject_IsTrue(__pyx_t_9); if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0,
|
|
24751
|
+
__pyx_t_8 = __Pyx_PyObject_IsTrue(__pyx_t_9); if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0, 309, __pyx_L1_error)
|
|
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24752
|
__Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
|
|
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24753
|
if (__pyx_t_8) {
|
|
24757
24754
|
|
|
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|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24755
|
+
/* "sknetwork/hierarchy/paris.pyx":310
|
|
24759
24756
|
* dendrogram = np.array(dendrogram)
|
|
24760
24757
|
* if self.reorder:
|
|
24761
24758
|
* dendrogram = reorder_dendrogram(dendrogram) # <<<<<<<<<<<<<<
|
|
24762
24759
|
*
|
|
24763
24760
|
* self.dendrogram_ = dendrogram
|
|
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24761
|
*/
|
|
24765
|
-
__Pyx_GetModuleGlobalName(
|
|
24766
|
-
__Pyx_GOTREF(
|
|
24767
|
-
|
|
24762
|
+
__Pyx_GetModuleGlobalName(__pyx_t_3, __pyx_n_s_reorder_dendrogram); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 310, __pyx_L1_error)
|
|
24763
|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
24764
|
+
__pyx_t_1 = NULL;
|
|
24768
24765
|
__pyx_t_16 = 0;
|
|
24769
24766
|
#if CYTHON_UNPACK_METHODS
|
|
24770
|
-
if (unlikely(PyMethod_Check(
|
|
24771
|
-
|
|
24772
|
-
if (likely(
|
|
24773
|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
24774
|
-
__Pyx_INCREF(
|
|
24767
|
+
if (unlikely(PyMethod_Check(__pyx_t_3))) {
|
|
24768
|
+
__pyx_t_1 = PyMethod_GET_SELF(__pyx_t_3);
|
|
24769
|
+
if (likely(__pyx_t_1)) {
|
|
24770
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
|
|
24771
|
+
__Pyx_INCREF(__pyx_t_1);
|
|
24775
24772
|
__Pyx_INCREF(function);
|
|
24776
|
-
__Pyx_DECREF_SET(
|
|
24773
|
+
__Pyx_DECREF_SET(__pyx_t_3, function);
|
|
24777
24774
|
__pyx_t_16 = 1;
|
|
24778
24775
|
}
|
|
24779
24776
|
}
|
|
24780
24777
|
#endif
|
|
24781
24778
|
{
|
|
24782
|
-
PyObject *__pyx_callargs[2] = {
|
|
24783
|
-
__pyx_t_9 = __Pyx_PyObject_FastCall(
|
|
24784
|
-
__Pyx_XDECREF(
|
|
24785
|
-
if (unlikely(!__pyx_t_9)) __PYX_ERR(0,
|
|
24779
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_1, __pyx_v_dendrogram};
|
|
24780
|
+
__pyx_t_9 = __Pyx_PyObject_FastCall(__pyx_t_3, __pyx_callargs+1-__pyx_t_16, 1+__pyx_t_16);
|
|
24781
|
+
__Pyx_XDECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
24782
|
+
if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 310, __pyx_L1_error)
|
|
24786
24783
|
__Pyx_GOTREF(__pyx_t_9);
|
|
24787
|
-
__Pyx_DECREF(
|
|
24784
|
+
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
24788
24785
|
}
|
|
24789
24786
|
__Pyx_DECREF_SET(__pyx_v_dendrogram, __pyx_t_9);
|
|
24790
24787
|
__pyx_t_9 = 0;
|
|
24791
24788
|
|
|
24792
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24789
|
+
/* "sknetwork/hierarchy/paris.pyx":309
|
|
24793
24790
|
*
|
|
24794
24791
|
* dendrogram = np.array(dendrogram)
|
|
24795
24792
|
* if self.reorder: # <<<<<<<<<<<<<<
|
|
@@ -24798,65 +24795,65 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24798
24795
|
*/
|
|
24799
24796
|
}
|
|
24800
24797
|
|
|
24801
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24798
|
+
/* "sknetwork/hierarchy/paris.pyx":312
|
|
24802
24799
|
* dendrogram = reorder_dendrogram(dendrogram)
|
|
24803
24800
|
*
|
|
24804
24801
|
* self.dendrogram_ = dendrogram # <<<<<<<<<<<<<<
|
|
24805
24802
|
* if self.bipartite:
|
|
24806
24803
|
* self._split_vars(input_matrix.shape)
|
|
24807
24804
|
*/
|
|
24808
|
-
if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_dendrogram, __pyx_v_dendrogram) < 0) __PYX_ERR(0,
|
|
24805
|
+
if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_dendrogram, __pyx_v_dendrogram) < 0) __PYX_ERR(0, 312, __pyx_L1_error)
|
|
24809
24806
|
|
|
24810
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24807
|
+
/* "sknetwork/hierarchy/paris.pyx":313
|
|
24811
24808
|
*
|
|
24812
24809
|
* self.dendrogram_ = dendrogram
|
|
24813
24810
|
* if self.bipartite: # <<<<<<<<<<<<<<
|
|
24814
24811
|
* self._split_vars(input_matrix.shape)
|
|
24815
24812
|
*
|
|
24816
24813
|
*/
|
|
24817
|
-
__pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_bipartite); if (unlikely(!__pyx_t_9)) __PYX_ERR(0,
|
|
24814
|
+
__pyx_t_9 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_bipartite); if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 313, __pyx_L1_error)
|
|
24818
24815
|
__Pyx_GOTREF(__pyx_t_9);
|
|
24819
|
-
__pyx_t_8 = __Pyx_PyObject_IsTrue(__pyx_t_9); if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0,
|
|
24816
|
+
__pyx_t_8 = __Pyx_PyObject_IsTrue(__pyx_t_9); if (unlikely((__pyx_t_8 < 0))) __PYX_ERR(0, 313, __pyx_L1_error)
|
|
24820
24817
|
__Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
|
|
24821
24818
|
if (__pyx_t_8) {
|
|
24822
24819
|
|
|
24823
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24820
|
+
/* "sknetwork/hierarchy/paris.pyx":314
|
|
24824
24821
|
* self.dendrogram_ = dendrogram
|
|
24825
24822
|
* if self.bipartite:
|
|
24826
24823
|
* self._split_vars(input_matrix.shape) # <<<<<<<<<<<<<<
|
|
24827
24824
|
*
|
|
24828
24825
|
* return self
|
|
24829
24826
|
*/
|
|
24830
|
-
|
|
24831
|
-
__Pyx_GOTREF(
|
|
24832
|
-
|
|
24833
|
-
__Pyx_GOTREF(
|
|
24834
|
-
|
|
24827
|
+
__pyx_t_3 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_split_vars); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 314, __pyx_L1_error)
|
|
24828
|
+
__Pyx_GOTREF(__pyx_t_3);
|
|
24829
|
+
__pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_input_matrix, __pyx_n_s_shape); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 314, __pyx_L1_error)
|
|
24830
|
+
__Pyx_GOTREF(__pyx_t_1);
|
|
24831
|
+
__pyx_t_5 = NULL;
|
|
24835
24832
|
__pyx_t_16 = 0;
|
|
24836
24833
|
#if CYTHON_UNPACK_METHODS
|
|
24837
|
-
if (likely(PyMethod_Check(
|
|
24838
|
-
|
|
24839
|
-
if (likely(
|
|
24840
|
-
PyObject* function = PyMethod_GET_FUNCTION(
|
|
24841
|
-
__Pyx_INCREF(
|
|
24834
|
+
if (likely(PyMethod_Check(__pyx_t_3))) {
|
|
24835
|
+
__pyx_t_5 = PyMethod_GET_SELF(__pyx_t_3);
|
|
24836
|
+
if (likely(__pyx_t_5)) {
|
|
24837
|
+
PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_3);
|
|
24838
|
+
__Pyx_INCREF(__pyx_t_5);
|
|
24842
24839
|
__Pyx_INCREF(function);
|
|
24843
|
-
__Pyx_DECREF_SET(
|
|
24840
|
+
__Pyx_DECREF_SET(__pyx_t_3, function);
|
|
24844
24841
|
__pyx_t_16 = 1;
|
|
24845
24842
|
}
|
|
24846
24843
|
}
|
|
24847
24844
|
#endif
|
|
24848
24845
|
{
|
|
24849
|
-
PyObject *__pyx_callargs[2] = {
|
|
24850
|
-
__pyx_t_9 = __Pyx_PyObject_FastCall(
|
|
24851
|
-
__Pyx_XDECREF(
|
|
24852
|
-
__Pyx_DECREF(
|
|
24853
|
-
if (unlikely(!__pyx_t_9)) __PYX_ERR(0,
|
|
24846
|
+
PyObject *__pyx_callargs[2] = {__pyx_t_5, __pyx_t_1};
|
|
24847
|
+
__pyx_t_9 = __Pyx_PyObject_FastCall(__pyx_t_3, __pyx_callargs+1-__pyx_t_16, 1+__pyx_t_16);
|
|
24848
|
+
__Pyx_XDECREF(__pyx_t_5); __pyx_t_5 = 0;
|
|
24849
|
+
__Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
|
|
24850
|
+
if (unlikely(!__pyx_t_9)) __PYX_ERR(0, 314, __pyx_L1_error)
|
|
24854
24851
|
__Pyx_GOTREF(__pyx_t_9);
|
|
24855
|
-
__Pyx_DECREF(
|
|
24852
|
+
__Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
|
|
24856
24853
|
}
|
|
24857
24854
|
__Pyx_DECREF(__pyx_t_9); __pyx_t_9 = 0;
|
|
24858
24855
|
|
|
24859
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24856
|
+
/* "sknetwork/hierarchy/paris.pyx":313
|
|
24860
24857
|
*
|
|
24861
24858
|
* self.dendrogram_ = dendrogram
|
|
24862
24859
|
* if self.bipartite: # <<<<<<<<<<<<<<
|
|
@@ -24865,7 +24862,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24865
24862
|
*/
|
|
24866
24863
|
}
|
|
24867
24864
|
|
|
24868
|
-
/* "sknetwork/hierarchy/paris.pyx":
|
|
24865
|
+
/* "sknetwork/hierarchy/paris.pyx":316
|
|
24869
24866
|
* self._split_vars(input_matrix.shape)
|
|
24870
24867
|
*
|
|
24871
24868
|
* return self # <<<<<<<<<<<<<<
|
|
@@ -24880,7 +24877,7 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
|
|
|
24880
24877
|
*
|
|
24881
24878
|
* @cython.boundscheck(False) # <<<<<<<<<<<<<<
|
|
24882
24879
|
* @cython.wraparound(False)
|
|
24883
|
-
* def fit(self, input_matrix: Union[sparse.csr_matrix, np.ndarray]) -> 'Paris':
|
|
24880
|
+
* def fit(self, input_matrix: Union[sparse.csr_matrix, np.ndarray], force_bipartite: bool = False) -> 'Paris':
|
|
24884
24881
|
*/
|
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/* function exit code */
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@@ -24901,7 +24898,6 @@ static PyObject *__pyx_pf_9sknetwork_9hierarchy_5paris_5Paris_2fit(CYTHON_UNUSED
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{&
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{&__pyx_n_s_error, __pyx_k_error, sizeof(__pyx_k_error), 0, 0, 1, 1},
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{&__pyx_n_s_flags, __pyx_k_flags, sizeof(__pyx_k_flags), 0, 0, 1, 1},
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{&__pyx_n_s_force_bipartite, __pyx_k_force_bipartite, sizeof(__pyx_k_force_bipartite), 0, 0, 1, 1},
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-
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/* "C:/Users/runneradmin/AppData/Local/Temp/cibw-run-2jqincfh/cp39-win_amd64/build/venv/lib/site-packages/numpy/__init__.cython-30.pxd":990
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