scikit-learn-intelex 2024.1.0__py39-none-manylinux1_x86_64.whl → 2024.3.0__py39-none-manylinux1_x86_64.whl

sklearnex/neighbors/lof.py

@@ -1,436 +0,0 @@
-# ===============================================================================
-# Copyright 2023 Intel Corporation
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-# ===============================================================================
-
-import warnings
-
-import numpy as np
-from sklearn.neighbors._lof import LocalOutlierFactor as sklearn_LocalOutlierFactor
-
-from .knn_unsupervised import NearestNeighbors
-
-try:
-    from sklearn.utils.metaestimators import available_if
-except ImportError:
-    pass
-
-from sklearn.utils import check_array
-from sklearn.utils.validation import check_is_fitted
-
-from daal4py.sklearn._utils import sklearn_check_version
-
-from .._config import config_context
-from .._device_offload import dispatch, wrap_output_data
-from .._utils import PatchingConditionsChain
-
-if sklearn_check_version("1.0"):
-
-    class LocalOutlierFactor(sklearn_LocalOutlierFactor):
-        if sklearn_check_version("1.2"):
-            _parameter_constraints: dict = {
-                **sklearn_LocalOutlierFactor._parameter_constraints
-            }
-
-        def __init__(
-            self,
-            n_neighbors=20,
-            *,
-            algorithm="auto",
-            leaf_size=30,
-            metric="minkowski",
-            p=2,
-            metric_params=None,
-            contamination="auto",
-            novelty=False,
-            n_jobs=None,
-        ):
-            super().__init__(
-                n_neighbors=n_neighbors,
-                algorithm=algorithm,
-                leaf_size=leaf_size,
-                metric=metric,
-                p=p,
-                metric_params=metric_params,
-                n_jobs=n_jobs,
-                contamination=contamination,
-                novelty=novelty,
-            )
-
-        def _fit(self, X, y, queue=None):
-            with config_context(target_offload=queue):
-                if sklearn_check_version("1.2"):
-                    self._validate_params()
-                self._knn = NearestNeighbors(
-                    n_neighbors=self.n_neighbors,
-                    algorithm=self.algorithm,
-                    leaf_size=self.leaf_size,
-                    metric=self.metric,
-                    p=self.p,
-                    metric_params=self.metric_params,
-                    n_jobs=self.n_jobs,
-                )
-                self._knn.fit(X)
-
-                if self.contamination != "auto":
-                    if not (0.0 < self.contamination <= 0.5):
-                        raise ValueError(
-                            "contamination must be in (0, 0.5], "
-                            "got: %f" % self.contamination
-                        )
-
-                n_samples = self._knn.n_samples_fit_
-
-                if self.n_neighbors > n_samples:
-                    warnings.warn(
-                        "n_neighbors (%s) is greater than the "
-                        "total number of samples (%s). n_neighbors "
-                        "will be set to (n_samples - 1) for estimation."
-                        % (self.n_neighbors, n_samples)
-                    )
-                self.n_neighbors_ = max(1, min(self.n_neighbors, n_samples - 1))
-
-                self._distances_fit_X_, _neighbors_indices_fit_X_ = self._knn.kneighbors(
-                    n_neighbors=self.n_neighbors_
-                )
-
-                self._lrd = self._local_reachability_density(
-                    self._distances_fit_X_, _neighbors_indices_fit_X_
-                )
-
-                # Compute lof score over training samples to define offset_:
-                lrd_ratios_array = (
-                    self._lrd[_neighbors_indices_fit_X_] / self._lrd[:, np.newaxis]
-                )
-
-                self.negative_outlier_factor_ = -np.mean(lrd_ratios_array, axis=1)
-
-                if self.contamination == "auto":
-                    # inliers score around -1 (the higher, the less abnormal).
-                    self.offset_ = -1.5
-                else:
-                    self.offset_ = np.percentile(
-                        self.negative_outlier_factor_, 100.0 * self.contamination
-                    )
-
-                for knn_prop_name in self._knn.__dict__.keys():
-                    if knn_prop_name not in self.__dict__.keys():
-                        setattr(self, knn_prop_name, self._knn.__dict__[knn_prop_name])
-
-                return self
-
-        def fit(self, X, y=None):
-            return dispatch(
-                self,
-                "neighbors.LocalOutlierFactor.fit",
-                {
-                    "onedal": self.__class__._fit,
-                    "sklearn": None,
-                },
-                X,
-                y,
-            )
-
-        def _onedal_predict(self, X, queue=None):
-            with config_context(target_offload=queue):
-                check_is_fitted(self)
-
-                if X is not None:
-                    X = check_array(X, accept_sparse="csr")
-                    is_inlier = np.ones(X.shape[0], dtype=int)
-                    is_inlier[self.decision_function(X) < 0] = -1
-                else:
-                    is_inlier = np.ones(self._knn.n_samples_fit_, dtype=int)
-                    is_inlier[self.negative_outlier_factor_ < self.offset_] = -1
-
-                return is_inlier
-
-        @wrap_output_data
-        def _predict(self, X=None):
-            return dispatch(
-                self,
-                "neighbors.LocalOutlierFactor.predict",
-                {
-                    "onedal": self.__class__._onedal_predict,
-                    "sklearn": None,
-                },
-                X,
-            )
-
-        def _score_samples(self, X, queue=None):
-            with config_context(target_offload=queue):
-                check_is_fitted(self)
-                X = check_array(X, accept_sparse="csr")
-
-                distances_X, neighbors_indices_X = self._knn.kneighbors(
-                    X, n_neighbors=self.n_neighbors_
-                )
-                X_lrd = self._local_reachability_density(distances_X, neighbors_indices_X)
-
-                lrd_ratios_array = self._lrd[neighbors_indices_X] / X_lrd[:, np.newaxis]
-
-                # as bigger is better:
-                return -np.mean(lrd_ratios_array, axis=1)
-
-        def _check_novelty_score_samples(self):
-            if not self.novelty:
-                msg = (
-                    "score_samples is not available when novelty=False. The "
-                    "scores of the training samples are always available "
-                    "through the negative_outlier_factor_ attribute. Use "
-                    "novelty=True if you want to use LOF for novelty detection "
-                    "and compute score_samples for new unseen data."
-                )
-                raise AttributeError(msg)
-            return True
-
-        @available_if(_check_novelty_score_samples)
-        @wrap_output_data
-        def score_samples(self, X):
-            return dispatch(
-                self,
-                "neighbors.LocalOutlierFactor.score_samples",
-                {
-                    "onedal": self.__class__._score_samples,
-                    "sklearn": None,
-                },
-                X,
-            )
-
-        def _check_novelty_fit_predict(self):
-            if self.novelty:
-                msg = (
-                    "fit_predict is not available when novelty=True. Use "
-                    "novelty=False if you want to predict on the training set."
-                )
-                raise AttributeError(msg)
-            return True
-
-        def _fit_predict(self, X, y, queue=None):
-            with config_context(target_offload=queue):
-                return self.fit(X)._predict()
-
-        @available_if(_check_novelty_fit_predict)
-        @wrap_output_data
-        def fit_predict(self, X, y=None):
-            return dispatch(
-                self,
-                "neighbors.LocalOutlierFactor.fit_predict",
-                {
-                    "onedal": self.__class__._fit_predict,
-                    "sklearn": None,
-                },
-                X,
-                y,
-            )
-
-        def _onedal_gpu_supported(self, method_name, *data):
-            class_name = self.__class__.__name__
-            patching_status = PatchingConditionsChain(
-                f"sklearn.neighbors.{class_name}.{method_name}"
-            )
-            return patching_status
-
-        def _onedal_cpu_supported(self, method_name, *data):
-            class_name = self.__class__.__name__
-            patching_status = PatchingConditionsChain(
-                f"sklearn.neighbors.{class_name}.{method_name}"
-            )
-            return patching_status
-
-else:
-
-    class LocalOutlierFactor(sklearn_LocalOutlierFactor):
-        def __init__(
-            self,
-            n_neighbors=20,
-            *,
-            algorithm="auto",
-            leaf_size=30,
-            metric="minkowski",
-            p=2,
-            metric_params=None,
-            contamination="auto",
-            novelty=False,
-            n_jobs=None,
-        ):
-            super().__init__(
-                n_neighbors=n_neighbors,
-                algorithm=algorithm,
-                leaf_size=leaf_size,
-                metric=metric,
-                p=p,
-                metric_params=metric_params,
-                n_jobs=n_jobs,
-                contamination=contamination,
-                novelty=novelty,
-            )
-
-        def _fit(self, X, y=None, queue=None):
-            with config_context(target_offload=queue):
-                self._knn = NearestNeighbors(
-                    n_neighbors=self.n_neighbors,
-                    algorithm=self.algorithm,
-                    leaf_size=self.leaf_size,
-                    metric=self.metric,
-                    p=self.p,
-                    metric_params=self.metric_params,
-                    n_jobs=self.n_jobs,
-                )
-                self._knn.fit(X)
-
-                if self.contamination != "auto":
-                    if not (0.0 < self.contamination <= 0.5):
-                        raise ValueError(
-                            "contamination must be in (0, 0.5], "
-                            "got: %f" % self.contamination
-                        )
-
-                n_samples = self._knn.n_samples_fit_
-
-                if self.n_neighbors > n_samples:
-                    warnings.warn(
-                        "n_neighbors (%s) is greater than the "
-                        "total number of samples (%s). n_neighbors "
-                        "will be set to (n_samples - 1) for estimation."
-                        % (self.n_neighbors, n_samples)
-                    )
-                self.n_neighbors_ = max(1, min(self.n_neighbors, n_samples - 1))
-
-                self._distances_fit_X_, _neighbors_indices_fit_X_ = self._knn.kneighbors(
-                    n_neighbors=self.n_neighbors_
-                )
-
-                self._lrd = self._local_reachability_density(
-                    self._distances_fit_X_, _neighbors_indices_fit_X_
-                )
-
-                # Compute lof score over training samples to define offset_:
-                lrd_ratios_array = (
-                    self._lrd[_neighbors_indices_fit_X_] / self._lrd[:, np.newaxis]
-                )
-
-                self.negative_outlier_factor_ = -np.mean(lrd_ratios_array, axis=1)
-
-                if self.contamination == "auto":
-                    # inliers score around -1 (the higher, the less abnormal).
-                    self.offset_ = -1.5
-                else:
-                    self.offset_ = np.percentile(
-                        self.negative_outlier_factor_, 100.0 * self.contamination
-                    )
-
-                for knn_prop_name in self._knn.__dict__.keys():
-                    if knn_prop_name not in self.__dict__.keys():
-                        setattr(self, knn_prop_name, self._knn.__dict__[knn_prop_name])
-
-                return self
-
-        def fit(self, X, y=None):
-            return dispatch(
-                self,
-                "neighbors.LocalOutlierFactor.fit",
-                {
-                    "onedal": self.__class__._fit,
-                    "sklearn": None,
-                },
-                X,
-                y,
-            )
-
-        def _onedal_predict(self, X, queue=None):
-            with config_context(target_offload=queue):
-                check_is_fitted(self)
-
-                if X is not None:
-                    X = check_array(X, accept_sparse="csr")
-                    is_inlier = np.ones(X.shape[0], dtype=int)
-                    is_inlier[self.decision_function(X) < 0] = -1
-                else:
-                    is_inlier = np.ones(self._knn.n_samples_fit_, dtype=int)
-                    is_inlier[self.negative_outlier_factor_ < self.offset_] = -1
-
-                return is_inlier
-
-        @wrap_output_data
-        def _predict(self, X=None):
-            return dispatch(
-                self,
-                "neighbors.LocalOutlierFactor.predict",
-                {
-                    "onedal": self.__class__._onedal_predict,
-                    "sklearn": None,
-                },
-                X,
-            )
-
-        def _onedal_score_samples(self, X, queue=None):
-            with config_context(target_offload=queue):
-                check_is_fitted(self)
-                X = check_array(X, accept_sparse="csr")
-
-                distances_X, neighbors_indices_X = self._knn.kneighbors(
-                    X, n_neighbors=self.n_neighbors_
-                )
-                X_lrd = self._local_reachability_density(distances_X, neighbors_indices_X)
-
-                lrd_ratios_array = self._lrd[neighbors_indices_X] / X_lrd[:, np.newaxis]
-
-                # as bigger is better:
-                return -np.mean(lrd_ratios_array, axis=1)
-
-        @wrap_output_data
-        def _score_samples(self, X):
-            if not self.novelty:
-                msg = (
-                    "score_samples is not available when novelty=False. The "
-                    "scores of the training samples are always available "
-                    "through the negative_outlier_factor_ attribute. Use "
-                    "novelty=True if you want to use LOF for novelty detection "
-                    "and compute score_samples for new unseen data."
-                )
-                raise AttributeError(msg)
-
-            return dispatch(
-                self,
-                "neighbors.LocalOutlierFactor.score_samples",
-                {
-                    "onedal": self.__class__._onedal_score_samples,
-                    "sklearn": None,
-                },
-                X,
-            )
-
-        def _onedal_fit_predict(self, X, y, queue=None):
-            with config_context(target_offload=queue):
-                return self.fit(X)._predict()
-
-        @wrap_output_data
-        def _fit_predict(self, X, y=None):
-            return dispatch(
-                self,
-                "neighbors.LocalOutlierFactor._onedal_fit_predict",
-                {
-                    "onedal": self.__class__._onedal_fit_predict,
-                    "sklearn": None,
-                },
-                X,
-                y,
-            )
-
-        def _onedal_gpu_supported(self, method_name, *data):
-            return True
-
-        def _onedal_cpu_supported(self, method_name, *data):
-            return True