sapiopycommons 2025.4.17a489__py3-none-any.whl → 2025.4.23a491__py3-none-any.whl

sapiopycommons-2025.4.23a491.dist-info/RECORD

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sapiopycommons/eln/experiment_cache.py

@@ -1,188 +0,0 @@
-from __future__ import annotations
-
-from weakref import WeakValueDictionary
-
-from sapiopylib.rest.ELNService import ElnManager
-from sapiopylib.rest.User import SapioUser
-from sapiopylib.rest.pojo.datatype.FieldDefinition import AbstractVeloxFieldDefinition
-from sapiopylib.rest.pojo.eln.ElnExperiment import ElnTemplate, TemplateExperimentQuery
-from sapiopylib.rest.pojo.eln.SapioELNEnums import ElnBaseDataType
-from sapiopylib.rest.pojo.eln.field_set import ElnFieldSetInfo
-from sapiopylib.rest.pojo.eln.protocol_template import ProtocolTemplateInfo, ProtocolTemplateQuery
-
-from sapiopycommons.general.aliases import UserIdentifier, AliasUtil
-from sapiopycommons.general.exceptions import SapioException
-
-
-# FR-47530: Created a class that caches experiment template and predefined field information.
-class ExperimentCacheManager:
-    """
-    A class to manage the caching of experiment-related information.
-    """
-    user: SapioUser
-    eln_man: ElnManager
-
-    _templates: list[ElnTemplate]
-    """A list of experiment templates. Only cached when first accessed."""
-    _protocols: list[ProtocolTemplateInfo]
-    """A list of protocol templates. Only cached when first accessed."""
-    _field_sets: dict[str, ElnFieldSetInfo]
-    """A dictionary of field set name to field set. Only cached when first accessed."""
-    _field_set_fields: dict[int, list[AbstractVeloxFieldDefinition]]
-    """A dictionary of field set ID to field definitions. Only cached when first accessed."""
-    _predefined_fields: dict[str, dict[str, AbstractVeloxFieldDefinition]]
-    """A dictionary of ELN data type name to predefined field definitions. Only cached when first accessed."""
-
-    __instances: WeakValueDictionary[SapioUser, ExperimentCacheManager] = WeakValueDictionary()
-    __initialized: bool
-
-    def __new__(cls, context: UserIdentifier):
-        """
-        :param context: The current webhook context or a user object to send requests from.
-        """
-        user = AliasUtil.to_sapio_user(context)
-        obj = cls.__instances.get(user)
-        if not obj:
-            obj = object.__new__(cls)
-            obj.__initialized = False
-            cls.__instances[user] = obj
-        return obj
-
-    def __init__(self, context: UserIdentifier):
-        """
-        :param context: The current webhook context or a user object to send requests from.
-        """
-        if self.__initialized:
-            return
-        self.__initialized = True
-
-        self.user = AliasUtil.to_sapio_user(context)
-        self.eln_man = ElnManager(self.user)
-
-        self._field_set_fields = {}
-        self._predefined_fields = {}
-
-    def get_experiment_template(self, name: str, active: bool = True, version: int | None = None,
-                                first_match: bool = False, public: bool | None = True) -> ElnTemplate:
-        """
-        Get the experiment template with the given information.
-
-        :param name: The name of the template.
-        :param active: Whether the template is marked as active.
-        :param version: The version of the template to get. If None, the latest version will be returned.
-        :param first_match: If true, returns the first match found. If false, raises an exception.
-        :param public: Whether the template is public. If true, only pubic templates will be queried. If false, only
-            private templates will be queried. If None, both public and private templates will be queried. Non-public
-            templates do not have a version number, so this will always fail if public is false and a version number is
-            provided.
-        :return: The experiment template with the given information.
-        """
-        if not hasattr(self, "_templates"):
-            query = TemplateExperimentQuery()
-            query.active_templates_only = False
-            query.latest_version_only = False
-            self._templates = self.eln_man.get_template_experiment_list(query)
-        return self._find_template(self._templates, name, active, version, first_match, public)
-
-
-    def get_protocol_template(self, name: str, active: bool = True, version: int | None = None,
-                              first_match: bool = False, public: bool | None = True) -> ProtocolTemplateInfo:
-        """
-        Get the protocol template with the given information. Will throw an exception if multiple templates match
-        the given information.
-
-        :param name: The name of the template.
-        :param active: Whether the template is marked as active.
-        :param version: The version of the template to get. If None, the latest version will be returned.
-        :param first_match: If true, returns the first match found. If false, raises an exception.
-        :param public: Whether the template is public. If true, only pubic templates will be queried. If false, only
-            private templates will be queried. If None, both public and private templates will be queried. Non-public
-            templates do not have a version number, so this will always fail if public is false and a version number is
-            provided.
-        :return: The protocol template with the given information.
-        """
-        if not hasattr(self, "_protocols"):
-            query = ProtocolTemplateQuery()
-            query.active_templates_only = False
-            query.latest_version_only = False
-            self._protocols = self.eln_man.get_protocol_template_info_list(query)
-        return self._find_template(self._protocols, name, active, version, first_match, public)
-
-    @staticmethod
-    def _find_template(templates: list[ElnTemplate] | list[ProtocolTemplateInfo], name: str, active: bool,
-                       version: int, first_match: bool, public: bool | None) -> ElnTemplate | ProtocolTemplateInfo:
-        """
-        Find the experiment or protocol template with the given information.
-        """
-        matches = []
-        for template in templates:
-            if template.template_name != name:
-                continue
-            if template.active != active:
-                continue
-            if version is not None and template.template_version != version:
-                continue
-            if public is True and template.template_version is None:
-                continue
-            if public is False and template.template_version is not None:
-                continue
-            matches.append(template)
-        if not matches:
-            raise SapioException(f"No template with the name \"{name}\"" +
-                                 ("" if version is None else f" and the version {version}") +
-                                 f" found.")
-        # Only filter for the max version number if any of the matches actually have a version number.
-        versioned_matches = [x for x in matches if x.template_version is not None]
-        if version is None and versioned_matches:
-            return max(versioned_matches, key=lambda x: x.template_version)
-        if len(matches) > 1 and not first_match:
-            raise SapioException(f"Multiple templates with the name \"{name}\" found. Consider setting first_match to "
-                                 f"true, or restrict your search criteria further.")
-        return matches[0]
-
-    def get_predefined_field(self, field_name: str, data_type: ElnBaseDataType) -> AbstractVeloxFieldDefinition:
-        """
-        Get the predefined field of the given name for the given ELN data type.
-
-        :param field_name: The name of the field.
-        :param data_type: The ELN data type of the field.
-        :return: The predefined field of the given name for the given ELN data type.
-        """
-        return self.get_predefined_fields(data_type)[field_name]
-
-    def get_predefined_fields(self, data_type: ElnBaseDataType) -> dict[str, AbstractVeloxFieldDefinition]:
-        """
-        Get the predefined fields for the given ELN data type.
-
-        :param data_type: The ELN data type to get the predefined fields for.
-        :return: A dictionary of field name to field definition for the given ELN data type.
-        """
-        if data_type.data_type_name not in self._predefined_fields:
-            fields: list[AbstractVeloxFieldDefinition] = self.eln_man.get_predefined_fields(data_type)
-            self._predefined_fields[data_type.data_type_name] = {x.data_field_name: x for x in fields}
-        return self._predefined_fields[data_type.data_type_name]
-
-    def get_field_set(self, name: str) -> ElnFieldSetInfo:
-        """
-        Get the field set with the given name.
-
-        :param name: The name of the field set.
-        :return: The field set with the given name.
-        """
-        if not hasattr(self, "_field_sets"):
-            self._field_sets = {x.field_set_name: x for x in self.eln_man.get_field_set_info_list()}
-        return self._field_sets[name]
-
-    def get_field_set_fields(self, field_set: ElnFieldSetInfo | int) -> list[AbstractVeloxFieldDefinition]:
-        """
-        Get the fields of the given field set.
-
-        :param field_set: The field set to get the fields from. Can be either an ElnFieldSetInfo object or an integer
-            for the set ID.
-        :return: The fields of the given field set.
-        """
-        field_set: int = field_set if isinstance(field_set, int) else field_set.field_set_id
-        if field_set in self._field_set_fields:
-            return self._field_set_fields[field_set]
-        self._field_set_fields[field_set] = self.eln_man.get_predefined_fields_from_field_set_id(field_set)
-        return self._field_set_fields[field_set]