roms-tools 3.1.2__py3-none-any.whl → 3.3.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (221) hide show
  1. roms_tools/__init__.py +3 -0
  2. roms_tools/analysis/cdr_analysis.py +203 -0
  3. roms_tools/analysis/cdr_ensemble.py +198 -0
  4. roms_tools/analysis/roms_output.py +80 -46
  5. roms_tools/data/grids/GLORYS_global_grid.nc +0 -0
  6. roms_tools/download.py +4 -0
  7. roms_tools/plot.py +113 -51
  8. roms_tools/setup/boundary_forcing.py +45 -20
  9. roms_tools/setup/cdr_forcing.py +122 -8
  10. roms_tools/setup/cdr_release.py +161 -8
  11. roms_tools/setup/grid.py +150 -141
  12. roms_tools/setup/initial_conditions.py +113 -48
  13. roms_tools/setup/{datasets.py → lat_lon_datasets.py} +443 -938
  14. roms_tools/setup/mask.py +63 -7
  15. roms_tools/setup/nesting.py +314 -117
  16. roms_tools/setup/river_datasets.py +527 -0
  17. roms_tools/setup/river_forcing.py +46 -20
  18. roms_tools/setup/surface_forcing.py +7 -9
  19. roms_tools/setup/tides.py +2 -3
  20. roms_tools/setup/topography.py +8 -10
  21. roms_tools/setup/utils.py +396 -23
  22. roms_tools/tests/test_analysis/test_cdr_analysis.py +144 -0
  23. roms_tools/tests/test_analysis/test_cdr_ensemble.py +202 -0
  24. roms_tools/tests/test_analysis/test_roms_output.py +61 -3
  25. roms_tools/tests/test_setup/test_boundary_forcing.py +54 -52
  26. roms_tools/tests/test_setup/test_cdr_forcing.py +54 -0
  27. roms_tools/tests/test_setup/test_cdr_release.py +118 -1
  28. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_east/c/0/0/0 +0 -0
  29. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_north/c/0/0/0 +0 -0
  30. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_west/c/0/0/0 +0 -0
  31. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_east/c/0/0/0 +0 -0
  32. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_north/c/0/0/0 +0 -0
  33. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_west/c/0/0/0 +0 -0
  34. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_east/c/0/0/0 +0 -0
  35. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_north/c/0/0/0 +0 -0
  36. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_west/c/0/0/0 +0 -0
  37. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_east/c/0/0/0 +0 -0
  38. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_north/c/0/0/0 +0 -0
  39. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_west/c/0/0/0 +0 -0
  40. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_east/c/0/0/0 +0 -0
  41. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_north/c/0/0/0 +0 -0
  42. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_west/c/0/0/0 +0 -0
  43. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_east/c/0/0/0 +0 -0
  44. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_north/c/0/0/0 +0 -0
  45. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_west/c/0/0/0 +0 -0
  46. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_east/c/0/0/0 +0 -0
  47. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_north/c/0/0/0 +0 -0
  48. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_west/c/0/0/0 +0 -0
  49. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_east/c/0/0/0 +0 -0
  50. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_north/c/0/0/0 +0 -0
  51. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_west/c/0/0/0 +0 -0
  52. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_east/c/0/0/0 +0 -0
  53. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_north/c/0/0/0 +0 -0
  54. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_west/c/0/0/0 +0 -0
  55. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_east/c/0/0/0 +0 -0
  56. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_north/c/0/0/0 +0 -0
  57. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_west/c/0/0/0 +0 -0
  58. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_east/c/0/0/0 +0 -0
  59. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_north/c/0/0/0 +0 -0
  60. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_west/c/0/0/0 +0 -0
  61. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_east/c/0/0/0 +0 -0
  62. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_north/c/0/0/0 +0 -0
  63. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_west/c/0/0/0 +0 -0
  64. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_east/c/0/0/0 +0 -0
  65. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_north/c/0/0/0 +0 -0
  66. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_west/c/0/0/0 +0 -0
  67. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_east/c/0/0/0 +0 -0
  68. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_north/c/0/0/0 +0 -0
  69. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_west/c/0/0/0 +0 -0
  70. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_east/c/0/0/0 +0 -0
  71. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_north/c/0/0/0 +0 -0
  72. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_west/c/0/0/0 +0 -0
  73. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_east/c/0/0/0 +0 -0
  74. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_north/c/0/0/0 +0 -0
  75. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_west/c/0/0/0 +0 -0
  76. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_east/c/0/0/0 +0 -0
  77. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_north/c/0/0/0 +0 -0
  78. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_west/c/0/0/0 +0 -0
  79. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_east/c/0/0/0 +0 -0
  80. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_north/c/0/0/0 +0 -0
  81. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_west/c/0/0/0 +0 -0
  82. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_east/c/0/0/0 +0 -0
  83. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_north/c/0/0/0 +0 -0
  84. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_west/c/0/0/0 +0 -0
  85. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_east/c/0/0/0 +0 -0
  86. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_north/c/0/0/0 +0 -0
  87. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_west/c/0/0/0 +0 -0
  88. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_east/c/0/0/0 +0 -0
  89. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_north/c/0/0/0 +0 -0
  90. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_west/c/0/0/0 +0 -0
  91. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_east/c/0/0/0 +0 -0
  92. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_north/c/0/0/0 +0 -0
  93. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_west/c/0/0/0 +0 -0
  94. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_east/c/0/0/0 +0 -0
  95. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_north/c/0/0/0 +0 -0
  96. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_west/c/0/0/0 +0 -0
  97. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_east/c/0/0/0 +0 -0
  98. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_north/c/0/0/0 +0 -0
  99. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_west/c/0/0/0 +0 -0
  100. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_east/c/0/0/0 +0 -0
  101. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_north/c/0/0/0 +0 -0
  102. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_west/c/0/0/0 +0 -0
  103. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_east/c/0/0/0 +0 -0
  104. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_north/c/0/0/0 +0 -0
  105. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_west/c/0/0/0 +0 -0
  106. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_east/c/0/0/0 +0 -0
  107. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_north/c/0/0/0 +0 -0
  108. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_west/c/0/0/0 +0 -0
  109. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_east/c/0/0/0 +0 -0
  110. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_north/c/0/0/0 +0 -0
  111. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_west/c/0/0/0 +0 -0
  112. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_east/c/0/0/0 +0 -0
  113. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_north/c/0/0/0 +0 -0
  114. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_west/c/0/0/0 +0 -0
  115. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_east/c/0/0/0 +0 -0
  116. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_north/c/0/0/0 +0 -0
  117. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_west/c/0/0/0 +0 -0
  118. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_east/c/0/0/0 +0 -0
  119. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_north/c/0/0/0 +0 -0
  120. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_west/c/0/0/0 +0 -0
  121. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zarr.json +406 -406
  122. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_east/c/0/0/0 +0 -0
  123. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_north/c/0/0/0 +0 -0
  124. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_west/c/0/0/0 +0 -0
  125. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_east/c/0/0/0 +0 -0
  126. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_north/c/0/0/0 +0 -0
  127. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_south/c/0/0/0 +0 -0
  128. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_west/c/0/0/0 +0 -0
  129. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_east/c/0/0/0 +0 -0
  130. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_north/c/0/0/0 +0 -0
  131. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_south/c/0/0/0 +0 -0
  132. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_west/c/0/0/0 +0 -0
  133. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_east/c/0/0/0 +0 -0
  134. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_north/c/0/0/0 +0 -0
  135. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_south/c/0/0/0 +0 -0
  136. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_west/c/0/0/0 +0 -0
  137. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_east/c/0/0 +0 -0
  138. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_north/c/0/0 +0 -0
  139. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_south/c/0/0 +0 -0
  140. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_west/c/0/0 +0 -0
  141. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_east/c/0/0/0 +0 -0
  142. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_north/c/0/0/0 +0 -0
  143. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_south/c/0/0/0 +0 -0
  144. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_west/c/0/0/0 +0 -0
  145. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_east/c/0/0 +0 -0
  146. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_north/c/0/0 +0 -0
  147. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_south/c/0/0 +0 -0
  148. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_west/c/0/0 +0 -0
  149. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/zarr.json +182 -182
  150. roms_tools/tests/test_setup/test_data/grid.zarr/h/c/0/0 +0 -0
  151. roms_tools/tests/test_setup/test_data/grid.zarr/zarr.json +191 -191
  152. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/h/c/0/0 +0 -0
  153. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/zarr.json +210 -210
  154. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/ALK/c/0/0/0/0 +0 -0
  155. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/ALK_ALT_CO2/c/0/0/0/0 +0 -0
  156. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DIC/c/0/0/0/0 +0 -0
  157. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DIC_ALT_CO2/c/0/0/0/0 +0 -0
  158. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOC/c/0/0/0/0 +0 -0
  159. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOCr/c/0/0/0/0 +0 -0
  160. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DON/c/0/0/0/0 +0 -0
  161. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DONr/c/0/0/0/0 +0 -0
  162. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOP/c/0/0/0/0 +0 -0
  163. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOPr/c/0/0/0/0 +0 -0
  164. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/Fe/c/0/0/0/0 +0 -0
  165. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/Lig/c/0/0/0/0 +0 -0
  166. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/NH4/c/0/0/0/0 +0 -0
  167. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/NO3/c/0/0/0/0 +0 -0
  168. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/O2/c/0/0/0/0 +0 -0
  169. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/PO4/c/0/0/0/0 +0 -0
  170. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/SiO3/c/0/0/0/0 +0 -0
  171. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatC/c/0/0/0/0 +0 -0
  172. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatChl/c/0/0/0/0 +0 -0
  173. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatFe/c/0/0/0/0 +0 -0
  174. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatP/c/0/0/0/0 +0 -0
  175. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatSi/c/0/0/0/0 +0 -0
  176. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazC/c/0/0/0/0 +0 -0
  177. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazChl/c/0/0/0/0 +0 -0
  178. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazFe/c/0/0/0/0 +0 -0
  179. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazP/c/0/0/0/0 +0 -0
  180. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/salt/c/0/0/0/0 +0 -0
  181. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spC/c/0/0/0/0 +0 -0
  182. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spCaCO3/c/0/0/0/0 +0 -0
  183. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spChl/c/0/0/0/0 +0 -0
  184. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spFe/c/0/0/0/0 +0 -0
  185. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spP/c/0/0/0/0 +0 -0
  186. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/temp/c/0/0/0/0 +0 -0
  187. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/u/c/0/0/0/0 +0 -0
  188. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/ubar/c/0/0/0 +0 -0
  189. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/v/c/0/0/0/0 +0 -0
  190. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/vbar/c/0/0/0 +0 -0
  191. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/zarr.json +182 -182
  192. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/zooC/c/0/0/0/0 +0 -0
  193. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/salt/c/0/0/0/0 +0 -0
  194. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/temp/c/0/0/0/0 +0 -0
  195. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/u/c/0/0/0/0 +0 -0
  196. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/ubar/c/0/0/0 +0 -0
  197. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/v/c/0/0/0/0 +0 -0
  198. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/vbar/c/0/0/0 +0 -0
  199. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/zarr.json +187 -187
  200. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/u_Im/c/0/0/0 +0 -0
  201. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/u_Re/c/0/0/0 +0 -0
  202. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/v_Im/c/0/0/0 +0 -0
  203. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/v_Re/c/0/0/0 +0 -0
  204. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/zarr.json +66 -66
  205. roms_tools/tests/test_setup/test_grid.py +236 -115
  206. roms_tools/tests/test_setup/test_initial_conditions.py +94 -41
  207. roms_tools/tests/test_setup/{test_datasets.py → test_lat_lon_datasets.py} +409 -100
  208. roms_tools/tests/test_setup/test_nesting.py +119 -31
  209. roms_tools/tests/test_setup/test_river_datasets.py +48 -0
  210. roms_tools/tests/test_setup/test_surface_forcing.py +2 -1
  211. roms_tools/tests/test_setup/test_utils.py +92 -2
  212. roms_tools/tests/test_setup/utils.py +71 -0
  213. roms_tools/tests/test_tiling/test_join.py +241 -0
  214. roms_tools/tests/test_utils.py +139 -17
  215. roms_tools/tiling/join.py +189 -0
  216. roms_tools/utils.py +131 -99
  217. {roms_tools-3.1.2.dist-info → roms_tools-3.3.0.dist-info}/METADATA +12 -2
  218. {roms_tools-3.1.2.dist-info → roms_tools-3.3.0.dist-info}/RECORD +221 -211
  219. {roms_tools-3.1.2.dist-info → roms_tools-3.3.0.dist-info}/WHEEL +0 -0
  220. {roms_tools-3.1.2.dist-info → roms_tools-3.3.0.dist-info}/licenses/LICENSE +0 -0
  221. {roms_tools-3.1.2.dist-info → roms_tools-3.3.0.dist-info}/top_level.txt +0 -0
@@ -1,7 +1,7 @@
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@@ -16,7 +16,7 @@
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@@ -58,7 +58,7 @@
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- "long_name": "dissolved inorganic phosphate",
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+ "long_name": "refractory dissolved organic nitrogen",
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@@ -115,14 +113,13 @@
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- "long_name": "small phytoplankton phosphorous",
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- "s_rho",
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@@ -130,7 +127,7 @@
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  "node_type": "array",
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- "long_name": "small phytoplankton carbon",
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@@ -229,7 +226,7 @@
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  "attributes": {
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- "long_name": "iron binding ligand",
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+ "long_name": "small phytoplankton CaCO3",
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  "coordinates": "abs_time",
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  "_FillValue": "AAAAAAAA+H8="
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@@ -286,8 +283,8 @@
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- "long_name": "potential temperature",
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- "units": "degrees Celsius",
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+ "long_name": "small phytoplankton carbon",
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  "coordinates": "abs_time",
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- "long_name": "sea surface height",
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+ "long_name": "iron binding ligand",
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  "dimension_names": [
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+ "s_rho",
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- "long_name": "small phytoplankton CaCO3",
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+ "long_name": "diatom iron",
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  "coordinates": "abs_time",
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- "diatChl": {
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- "long_name": "diatom chloropyll",
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- "long_name": "diatom iron",
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+ "long_name": "diatom phosphorus",
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  "coordinates": "abs_time",
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1029
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1033
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1071
1071
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1072
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1073
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1074
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1074
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1075
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1076
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1086
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1122
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1129
1123
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1124
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1131
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1132
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1175
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1176
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1177
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1189
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1180
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1190
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1192
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1232
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1233
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1234
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1289
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1290
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1291
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1292
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1293
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1348
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1398
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1399
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1505
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1506
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1507
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1508
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1507
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1509
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1519
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1520
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1523
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1563
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1564
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1564
+ "long_name": "refractory dissolved organic carbon",
1565
1565
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1566
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1576
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1618
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1619
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1620
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1621
- "long_name": "refractory dissolved organic phosphorus",
1621
+ "long_name": "dissolved inorganic carbon, alternative CO2",
1622
1622
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1623
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1732
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1733
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1734
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1735
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1736
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1735
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1747
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1751
1751
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1788
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1789
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1792
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1793
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1790
+ "long_name": "vertically integrated v-flux component",
1791
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1792
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1800
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1858
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1860
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1864
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1865
1862
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1901
1900
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1902
1901
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1903
1902
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1904
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1905
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1903
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1904
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1906
1905
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1907
1906
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1908
1907
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1909
1908
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1910
1909
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1911
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1910
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1911
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1912
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1913
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1914
1914
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1915
1915
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1916
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1917
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1918
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1918
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1919
1919
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1920
1920
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1921
1921
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@@ -1957,7 +1957,7 @@
1957
1957
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1958
1958
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1959
1959
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1960
- "long_name": "dissolved organic phosphorus",
1960
+ "long_name": "refractory dissolved organic phosphorus",
1961
1961
  "units": "mmol/m^3",
1962
1962
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1963
1963
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1972
1972
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1973
1973
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1974
1974
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1975
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1975
+ "salt": {
1976
1976
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1977
1977
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1978
1978
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@@ -2014,8 +2014,8 @@
2014
2014
  }
2015
2015
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2016
2016
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2017
- "long_name": "alkalinity, alternative CO2",
2018
- "units": "meq/m^3",
2017
+ "long_name": "salinity",
2018
+ "units": "PSU",
2019
2019
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2020
2020
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2021
2021
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2029
2029
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2030
2030
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2031
2031
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2032
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2032
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2033
2033
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2034
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2035
2035
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@@ -2071,7 +2071,7 @@
2071
2071
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2072
2072
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2073
2073
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2074
- "long_name": "dissolved inorganic nitrate",
2074
+ "long_name": "dissolved ammonia",
2075
2075
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2076
2076
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2077
2077
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2086
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2087
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2088
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2090
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2100
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2106
2106
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2128
2128
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2129
2129
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2130
2130
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2131
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2132
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2131
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2132
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2133
2133
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2134
2134
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2135
2135
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2136
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2137
2137
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2138
2138
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2139
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2140
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2141
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2142
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2143
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2147
2147
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2148
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2185
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2186
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2187
2187
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2188
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2188
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2189
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2190
2190
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2191
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2200
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2202
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2203
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2204
2204
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2206
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2242
2242
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2243
2243
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2244
2244
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2245
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2245
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2246
2246
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2247
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2257
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2258
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2259
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2299
2293
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2294
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2301
2295
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2302
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2303
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2304
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2296
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2297
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2305
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2306
2299
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2300
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2308
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2302
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2303
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2305
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2316
2306
  },
2317
- "Cs_r": {
2307
+ "zooC": {
2318
2308
  "shape": [
2319
- 3
2309
+ 1,
2310
+ 3,
2311
+ 4,
2312
+ 4
2320
2313
  ],
2321
2314
  "data_type": "float32",
2322
2315
  "chunk_grid": {
2323
2316
  "name": "regular",
2324
2317
  "configuration": {
2325
2318
  "chunk_shape": [
2326
- 3
2319
+ 1,
2320
+ 3,
2321
+ 4,
2322
+ 4
2327
2323
  ]
2328
2324
  }
2329
2325
  },
@@ -2350,21 +2346,25 @@
2350
2346
  }
2351
2347
  ],
2352
2348
  "attributes": {
2353
- "long_name": "Vertical stretching function at rho-points",
2354
- "units": "nondimensional",
2349
+ "long_name": "zooplankton carbon",
2350
+ "units": "mmol/m^3",
2351
+ "coordinates": "abs_time",
2355
2352
  "_FillValue": "AAAAAAAA+H8="
2356
2353
  },
2357
2354
  "dimension_names": [
2358
- "s_rho"
2355
+ "ocean_time",
2356
+ "s_rho",
2357
+ "eta_rho",
2358
+ "xi_rho"
2359
2359
  ],
2360
2360
  "zarr_format": 3,
2361
2361
  "node_type": "array",
2362
2362
  "storage_transformers": []
2363
2363
  },
2364
- "w": {
2364
+ "diatSi": {
2365
2365
  "shape": [
2366
2366
  1,
2367
- 4,
2367
+ 3,
2368
2368
  4,
2369
2369
  4
2370
2370
  ],
@@ -2374,7 +2374,7 @@
2374
2374
  "configuration": {
2375
2375
  "chunk_shape": [
2376
2376
  1,
2377
- 4,
2377
+ 3,
2378
2378
  4,
2379
2379
  4
2380
2380
  ]
@@ -2403,14 +2403,14 @@
2403
2403
  }
2404
2404
  ],
2405
2405
  "attributes": {
2406
- "long_name": "w-flux component",
2407
- "units": "m/s",
2406
+ "long_name": "diatom silicate",
2407
+ "units": "mmol/m^3",
2408
2408
  "coordinates": "abs_time",
2409
2409
  "_FillValue": "AAAAAAAA+H8="
2410
2410
  },
2411
2411
  "dimension_names": [
2412
2412
  "ocean_time",
2413
- "s_w",
2413
+ "s_rho",
2414
2414
  "eta_rho",
2415
2415
  "xi_rho"
2416
2416
  ],
@@ -2418,10 +2418,10 @@
2418
2418
  "node_type": "array",
2419
2419
  "storage_transformers": []
2420
2420
  },
2421
- "diatSi": {
2421
+ "w": {
2422
2422
  "shape": [
2423
2423
  1,
2424
- 3,
2424
+ 4,
2425
2425
  4,
2426
2426
  4
2427
2427
  ],
@@ -2431,7 +2431,7 @@
2431
2431
  "configuration": {
2432
2432
  "chunk_shape": [
2433
2433
  1,
2434
- 3,
2434
+ 4,
2435
2435
  4,
2436
2436
  4
2437
2437
  ]
@@ -2460,14 +2460,14 @@
2460
2460
  }
2461
2461
  ],
2462
2462
  "attributes": {
2463
- "long_name": "diatom silicate",
2464
- "units": "mmol/m^3",
2463
+ "long_name": "w-flux component",
2464
+ "units": "m/s",
2465
2465
  "coordinates": "abs_time",
2466
2466
  "_FillValue": "AAAAAAAA+H8="
2467
2467
  },
2468
2468
  "dimension_names": [
2469
2469
  "ocean_time",
2470
- "s_rho",
2470
+ "s_w",
2471
2471
  "eta_rho",
2472
2472
  "xi_rho"
2473
2473
  ],