roms-tools 3.1.2__py3-none-any.whl → 3.3.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (221) hide show
  1. roms_tools/__init__.py +3 -0
  2. roms_tools/analysis/cdr_analysis.py +203 -0
  3. roms_tools/analysis/cdr_ensemble.py +198 -0
  4. roms_tools/analysis/roms_output.py +80 -46
  5. roms_tools/data/grids/GLORYS_global_grid.nc +0 -0
  6. roms_tools/download.py +4 -0
  7. roms_tools/plot.py +113 -51
  8. roms_tools/setup/boundary_forcing.py +45 -20
  9. roms_tools/setup/cdr_forcing.py +122 -8
  10. roms_tools/setup/cdr_release.py +161 -8
  11. roms_tools/setup/grid.py +150 -141
  12. roms_tools/setup/initial_conditions.py +113 -48
  13. roms_tools/setup/{datasets.py → lat_lon_datasets.py} +443 -938
  14. roms_tools/setup/mask.py +63 -7
  15. roms_tools/setup/nesting.py +314 -117
  16. roms_tools/setup/river_datasets.py +527 -0
  17. roms_tools/setup/river_forcing.py +46 -20
  18. roms_tools/setup/surface_forcing.py +7 -9
  19. roms_tools/setup/tides.py +2 -3
  20. roms_tools/setup/topography.py +8 -10
  21. roms_tools/setup/utils.py +396 -23
  22. roms_tools/tests/test_analysis/test_cdr_analysis.py +144 -0
  23. roms_tools/tests/test_analysis/test_cdr_ensemble.py +202 -0
  24. roms_tools/tests/test_analysis/test_roms_output.py +61 -3
  25. roms_tools/tests/test_setup/test_boundary_forcing.py +54 -52
  26. roms_tools/tests/test_setup/test_cdr_forcing.py +54 -0
  27. roms_tools/tests/test_setup/test_cdr_release.py +118 -1
  28. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_east/c/0/0/0 +0 -0
  29. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_north/c/0/0/0 +0 -0
  30. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_west/c/0/0/0 +0 -0
  31. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_east/c/0/0/0 +0 -0
  32. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_north/c/0/0/0 +0 -0
  33. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_west/c/0/0/0 +0 -0
  34. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_east/c/0/0/0 +0 -0
  35. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_north/c/0/0/0 +0 -0
  36. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_west/c/0/0/0 +0 -0
  37. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_east/c/0/0/0 +0 -0
  38. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_north/c/0/0/0 +0 -0
  39. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_west/c/0/0/0 +0 -0
  40. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_east/c/0/0/0 +0 -0
  41. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_north/c/0/0/0 +0 -0
  42. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_west/c/0/0/0 +0 -0
  43. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_east/c/0/0/0 +0 -0
  44. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_north/c/0/0/0 +0 -0
  45. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_west/c/0/0/0 +0 -0
  46. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_east/c/0/0/0 +0 -0
  47. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_north/c/0/0/0 +0 -0
  48. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_west/c/0/0/0 +0 -0
  49. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_east/c/0/0/0 +0 -0
  50. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_north/c/0/0/0 +0 -0
  51. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_west/c/0/0/0 +0 -0
  52. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_east/c/0/0/0 +0 -0
  53. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_north/c/0/0/0 +0 -0
  54. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_west/c/0/0/0 +0 -0
  55. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_east/c/0/0/0 +0 -0
  56. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_north/c/0/0/0 +0 -0
  57. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_west/c/0/0/0 +0 -0
  58. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_east/c/0/0/0 +0 -0
  59. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_north/c/0/0/0 +0 -0
  60. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_west/c/0/0/0 +0 -0
  61. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_east/c/0/0/0 +0 -0
  62. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_north/c/0/0/0 +0 -0
  63. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_west/c/0/0/0 +0 -0
  64. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_east/c/0/0/0 +0 -0
  65. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_north/c/0/0/0 +0 -0
  66. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_west/c/0/0/0 +0 -0
  67. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_east/c/0/0/0 +0 -0
  68. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_north/c/0/0/0 +0 -0
  69. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_west/c/0/0/0 +0 -0
  70. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_east/c/0/0/0 +0 -0
  71. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_north/c/0/0/0 +0 -0
  72. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_west/c/0/0/0 +0 -0
  73. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_east/c/0/0/0 +0 -0
  74. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_north/c/0/0/0 +0 -0
  75. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_west/c/0/0/0 +0 -0
  76. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_east/c/0/0/0 +0 -0
  77. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_north/c/0/0/0 +0 -0
  78. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_west/c/0/0/0 +0 -0
  79. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_east/c/0/0/0 +0 -0
  80. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_north/c/0/0/0 +0 -0
  81. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_west/c/0/0/0 +0 -0
  82. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_east/c/0/0/0 +0 -0
  83. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_north/c/0/0/0 +0 -0
  84. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_west/c/0/0/0 +0 -0
  85. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_east/c/0/0/0 +0 -0
  86. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_north/c/0/0/0 +0 -0
  87. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_west/c/0/0/0 +0 -0
  88. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_east/c/0/0/0 +0 -0
  89. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_north/c/0/0/0 +0 -0
  90. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_west/c/0/0/0 +0 -0
  91. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_east/c/0/0/0 +0 -0
  92. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_north/c/0/0/0 +0 -0
  93. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_west/c/0/0/0 +0 -0
  94. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_east/c/0/0/0 +0 -0
  95. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_north/c/0/0/0 +0 -0
  96. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_west/c/0/0/0 +0 -0
  97. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_east/c/0/0/0 +0 -0
  98. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_north/c/0/0/0 +0 -0
  99. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_west/c/0/0/0 +0 -0
  100. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_east/c/0/0/0 +0 -0
  101. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_north/c/0/0/0 +0 -0
  102. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_west/c/0/0/0 +0 -0
  103. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_east/c/0/0/0 +0 -0
  104. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_north/c/0/0/0 +0 -0
  105. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_west/c/0/0/0 +0 -0
  106. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_east/c/0/0/0 +0 -0
  107. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_north/c/0/0/0 +0 -0
  108. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_west/c/0/0/0 +0 -0
  109. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_east/c/0/0/0 +0 -0
  110. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_north/c/0/0/0 +0 -0
  111. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_west/c/0/0/0 +0 -0
  112. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_east/c/0/0/0 +0 -0
  113. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_north/c/0/0/0 +0 -0
  114. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_west/c/0/0/0 +0 -0
  115. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_east/c/0/0/0 +0 -0
  116. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_north/c/0/0/0 +0 -0
  117. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_west/c/0/0/0 +0 -0
  118. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_east/c/0/0/0 +0 -0
  119. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_north/c/0/0/0 +0 -0
  120. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_west/c/0/0/0 +0 -0
  121. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zarr.json +406 -406
  122. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_east/c/0/0/0 +0 -0
  123. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_north/c/0/0/0 +0 -0
  124. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_west/c/0/0/0 +0 -0
  125. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_east/c/0/0/0 +0 -0
  126. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_north/c/0/0/0 +0 -0
  127. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_south/c/0/0/0 +0 -0
  128. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_west/c/0/0/0 +0 -0
  129. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_east/c/0/0/0 +0 -0
  130. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_north/c/0/0/0 +0 -0
  131. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_south/c/0/0/0 +0 -0
  132. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_west/c/0/0/0 +0 -0
  133. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_east/c/0/0/0 +0 -0
  134. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_north/c/0/0/0 +0 -0
  135. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_south/c/0/0/0 +0 -0
  136. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/u_west/c/0/0/0 +0 -0
  137. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_east/c/0/0 +0 -0
  138. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_north/c/0/0 +0 -0
  139. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_south/c/0/0 +0 -0
  140. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/ubar_west/c/0/0 +0 -0
  141. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_east/c/0/0/0 +0 -0
  142. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_north/c/0/0/0 +0 -0
  143. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_south/c/0/0/0 +0 -0
  144. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/v_west/c/0/0/0 +0 -0
  145. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_east/c/0/0 +0 -0
  146. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_north/c/0/0 +0 -0
  147. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_south/c/0/0 +0 -0
  148. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/vbar_west/c/0/0 +0 -0
  149. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/zarr.json +182 -182
  150. roms_tools/tests/test_setup/test_data/grid.zarr/h/c/0/0 +0 -0
  151. roms_tools/tests/test_setup/test_data/grid.zarr/zarr.json +191 -191
  152. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/h/c/0/0 +0 -0
  153. roms_tools/tests/test_setup/test_data/grid_that_straddles_dateline.zarr/zarr.json +210 -210
  154. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/ALK/c/0/0/0/0 +0 -0
  155. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/ALK_ALT_CO2/c/0/0/0/0 +0 -0
  156. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DIC/c/0/0/0/0 +0 -0
  157. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DIC_ALT_CO2/c/0/0/0/0 +0 -0
  158. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOC/c/0/0/0/0 +0 -0
  159. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOCr/c/0/0/0/0 +0 -0
  160. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DON/c/0/0/0/0 +0 -0
  161. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DONr/c/0/0/0/0 +0 -0
  162. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOP/c/0/0/0/0 +0 -0
  163. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/DOPr/c/0/0/0/0 +0 -0
  164. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/Fe/c/0/0/0/0 +0 -0
  165. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/Lig/c/0/0/0/0 +0 -0
  166. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/NH4/c/0/0/0/0 +0 -0
  167. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/NO3/c/0/0/0/0 +0 -0
  168. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/O2/c/0/0/0/0 +0 -0
  169. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/PO4/c/0/0/0/0 +0 -0
  170. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/SiO3/c/0/0/0/0 +0 -0
  171. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatC/c/0/0/0/0 +0 -0
  172. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatChl/c/0/0/0/0 +0 -0
  173. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatFe/c/0/0/0/0 +0 -0
  174. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatP/c/0/0/0/0 +0 -0
  175. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diatSi/c/0/0/0/0 +0 -0
  176. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazC/c/0/0/0/0 +0 -0
  177. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazChl/c/0/0/0/0 +0 -0
  178. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazFe/c/0/0/0/0 +0 -0
  179. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/diazP/c/0/0/0/0 +0 -0
  180. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/salt/c/0/0/0/0 +0 -0
  181. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spC/c/0/0/0/0 +0 -0
  182. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spCaCO3/c/0/0/0/0 +0 -0
  183. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spChl/c/0/0/0/0 +0 -0
  184. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spFe/c/0/0/0/0 +0 -0
  185. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/spP/c/0/0/0/0 +0 -0
  186. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/temp/c/0/0/0/0 +0 -0
  187. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/u/c/0/0/0/0 +0 -0
  188. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/ubar/c/0/0/0 +0 -0
  189. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/v/c/0/0/0/0 +0 -0
  190. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/vbar/c/0/0/0 +0 -0
  191. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/zarr.json +182 -182
  192. roms_tools/tests/test_setup/test_data/initial_conditions_with_bgc_from_climatology.zarr/zooC/c/0/0/0/0 +0 -0
  193. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/salt/c/0/0/0/0 +0 -0
  194. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/temp/c/0/0/0/0 +0 -0
  195. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/u/c/0/0/0/0 +0 -0
  196. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/ubar/c/0/0/0 +0 -0
  197. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/v/c/0/0/0/0 +0 -0
  198. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/vbar/c/0/0/0 +0 -0
  199. roms_tools/tests/test_setup/test_data/initial_conditions_with_unified_bgc_from_climatology.zarr/zarr.json +187 -187
  200. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/u_Im/c/0/0/0 +0 -0
  201. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/u_Re/c/0/0/0 +0 -0
  202. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/v_Im/c/0/0/0 +0 -0
  203. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/v_Re/c/0/0/0 +0 -0
  204. roms_tools/tests/test_setup/test_data/tidal_forcing.zarr/zarr.json +66 -66
  205. roms_tools/tests/test_setup/test_grid.py +236 -115
  206. roms_tools/tests/test_setup/test_initial_conditions.py +94 -41
  207. roms_tools/tests/test_setup/{test_datasets.py → test_lat_lon_datasets.py} +409 -100
  208. roms_tools/tests/test_setup/test_nesting.py +119 -31
  209. roms_tools/tests/test_setup/test_river_datasets.py +48 -0
  210. roms_tools/tests/test_setup/test_surface_forcing.py +2 -1
  211. roms_tools/tests/test_setup/test_utils.py +92 -2
  212. roms_tools/tests/test_setup/utils.py +71 -0
  213. roms_tools/tests/test_tiling/test_join.py +241 -0
  214. roms_tools/tests/test_utils.py +139 -17
  215. roms_tools/tiling/join.py +189 -0
  216. roms_tools/utils.py +131 -99
  217. {roms_tools-3.1.2.dist-info → roms_tools-3.3.0.dist-info}/METADATA +12 -2
  218. {roms_tools-3.1.2.dist-info → roms_tools-3.3.0.dist-info}/RECORD +221 -211
  219. {roms_tools-3.1.2.dist-info → roms_tools-3.3.0.dist-info}/WHEEL +0 -0
  220. {roms_tools-3.1.2.dist-info → roms_tools-3.3.0.dist-info}/licenses/LICENSE +0 -0
  221. {roms_tools-3.1.2.dist-info → roms_tools-3.3.0.dist-info}/top_level.txt +0 -0
@@ -1,6 +1,7 @@
1
- from datetime import datetime
1
+ from datetime import datetime, timedelta
2
2
  from unittest import mock
3
3
 
4
+ import numpy as np
4
5
  import pytest
5
6
  from pydantic import ValidationError
6
7
 
@@ -377,3 +378,119 @@ class TestTracerPerturbation:
377
378
  def test_get_tracer_metadata(self):
378
379
  d = VolumeRelease.get_tracer_metadata()
379
380
  assert len(d) == NUM_TRACERS
381
+
382
+
383
+ class TestReleaseAccounting:
384
+ def setup_method(self):
385
+ self.start = datetime(2020, 1, 1)
386
+ self.end = datetime(2020, 1, 11) # 10 days later
387
+
388
+ def make_release(self, release_type, fluxes=None, concentrations=None, times=None):
389
+ times = times or [self.start, self.end]
390
+
391
+ if release_type == "volume":
392
+ vr = VolumeRelease(
393
+ name="test",
394
+ lat=0.0,
395
+ lon=0.0,
396
+ depth=100.0,
397
+ times=times,
398
+ volume_fluxes=Flux("volume", fluxes),
399
+ tracer_concentrations={"DIC": Concentration("DIC", concentrations)},
400
+ )
401
+ vr._extend_to_endpoints(self.start, self.end)
402
+ return vr
403
+
404
+ elif release_type == "tracer":
405
+ tp = TracerPerturbation(
406
+ name="test",
407
+ lat=0.0,
408
+ lon=0.0,
409
+ depth=100.0,
410
+ times=times,
411
+ tracer_fluxes={"DIC": Flux("DIC", fluxes)},
412
+ )
413
+ tp._extend_to_endpoints(self.start, self.end)
414
+ return tp
415
+ else:
416
+ raise ValueError(f"Unknown release type {release_type}")
417
+
418
+ @pytest.mark.parametrize("release_type", ["volume", "tracer"])
419
+ def test_constant_flux(self, release_type):
420
+ """Case 0: constant fluxes."""
421
+ flux = 2.0
422
+ conc = 3.0 # only used for VolumeRelease
423
+ vr = self.make_release(release_type, fluxes=flux, concentrations=conc)
424
+ roms_stamps = np.array([0.0, 5.0, 10.0])
425
+ result = vr._do_accounting(roms_stamps, self.start)
426
+
427
+ expected = flux * (roms_stamps[-1] - roms_stamps[0])
428
+ if release_type == "volume":
429
+ expected *= conc
430
+
431
+ assert result["DIC"] == pytest.approx(expected)
432
+
433
+ @pytest.mark.parametrize("release_type", ["volume", "tracer"])
434
+ def test_aligned_releases(self, release_type):
435
+ """Case 1: release times exactly aligned with ROMS stamps."""
436
+ # ROMS time step: 5 days (we want to cover the simulation time of 10 days exactly)
437
+ roms = np.array([0.0, 5.0, 10.0]) * 24 * 3600 # seconds
438
+ release_times = [self.start + timedelta(seconds=s) for s in roms]
439
+ fluxes = [1, 3, 5]
440
+ concs = [1, 2, 1]
441
+
442
+ if release_type == "volume":
443
+ r = self.make_release(
444
+ release_type, fluxes=fluxes, concentrations=concs, times=release_times
445
+ )
446
+ elif release_type == "tracer":
447
+ r = self.make_release(release_type, fluxes=fluxes, times=release_times)
448
+
449
+ # Expected calculation
450
+ series = (
451
+ np.array([f * c for f, c in zip(fluxes, concs)])
452
+ if release_type == "volume"
453
+ else np.array(fluxes)
454
+ )
455
+ dt = np.diff(roms)
456
+ expected = np.sum(series[:-1] * dt)
457
+
458
+ result = r._do_accounting(roms, self.start)
459
+ assert result["DIC"] == pytest.approx(expected)
460
+
461
+ @pytest.mark.parametrize("release_type", ["volume", "tracer"])
462
+ def test_unaligned_releases(self, release_type):
463
+ """Case 2: release times unaligned with ROMS stamps."""
464
+ # ROMS time step: 5 days (we want to cover the simulation time of 10 days exactly)
465
+ roms = np.array([0.0, 2.5, 5.0, 7.5, 10.0]) * 24 * 3600 # seconds
466
+ rel_release_times = np.array([0.0, 1.0, 3.0, 6.0, 10.0]) * 24 * 3600 # seconds
467
+ release_times = [self.start + timedelta(seconds=s) for s in rel_release_times]
468
+ fluxes = [1, 2, 3, 4, 5]
469
+ concs = [1, 1.5, 2, 2.5, 1]
470
+
471
+ if release_type == "volume":
472
+ vr = self.make_release(
473
+ release_type, fluxes=fluxes, concentrations=concs, times=release_times
474
+ )
475
+ elif release_type == "tracer":
476
+ vr = self.make_release(release_type, fluxes=fluxes, times=release_times)
477
+
478
+ # Expected calculation
479
+ series = (
480
+ np.array([f * c for f, c in zip(fluxes, concs)])
481
+ if release_type == "volume"
482
+ else np.array(fluxes)
483
+ )
484
+ interp = np.interp(roms, rel_release_times, series)
485
+ dt = np.diff(roms)
486
+ expected = np.sum(interp[:-1] * dt)
487
+
488
+ result = vr._do_accounting(roms, self.start)
489
+ assert result["DIC"] == pytest.approx(expected)
490
+
491
+ @pytest.mark.parametrize("release_type", ["volume", "tracer"])
492
+ def test_raises_with_single_roms_timestamp(self, release_type):
493
+ vr = self.make_release(release_type, fluxes=1.0, concentrations=1.0)
494
+ roms_stamps = np.array([0.0])
495
+ with pytest.raises(ValueError, match="at least two ROMS time stamps"):
496
+ vr._do_accounting(roms_stamps, self.start)