roms-tools 2.6.2__py3-none-any.whl → 3.0.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- ci/environment-with-xesmf.yml +2 -1
- ci/environment.yml +2 -1
- roms_tools/__init__.py +10 -8
- roms_tools/analysis/roms_output.py +28 -137
- roms_tools/analysis/utils.py +0 -66
- roms_tools/constants.py +5 -0
- roms_tools/download.py +47 -4
- roms_tools/plot.py +35 -14
- roms_tools/regrid.py +3 -2
- roms_tools/setup/boundary_forcing.py +30 -27
- roms_tools/setup/cdr_forcing.py +1287 -0
- roms_tools/setup/cdr_release.py +537 -0
- roms_tools/setup/datasets.py +793 -103
- roms_tools/setup/fill.py +1 -1
- roms_tools/setup/grid.py +243 -79
- roms_tools/setup/initial_conditions.py +28 -24
- roms_tools/setup/mask.py +5 -3
- roms_tools/setup/nesting.py +14 -11
- roms_tools/setup/river_forcing.py +62 -125
- roms_tools/setup/surface_forcing.py +154 -41
- roms_tools/setup/tides.py +100 -426
- roms_tools/setup/topography.py +10 -6
- roms_tools/setup/utils.py +590 -116
- roms_tools/tests/test_analysis/test_roms_output.py +119 -36
- roms_tools/tests/test_regrid.py +3 -1
- roms_tools/tests/test_setup/test_boundary_forcing.py +57 -7
- roms_tools/tests/test_setup/test_cdr_forcing.py +958 -0
- roms_tools/tests/test_setup/test_cdr_release.py +388 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_ALT_CO2_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/ALK_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_ALT_CO2_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DIC_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOC_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOCr_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DON_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DONr_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOP_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/DOPr_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Fe_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/Lig_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NH4_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/NO3_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/O2_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/PO4_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_east/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_east/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_north/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_north/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_south/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_south/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_west/c/0/0/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/SiO3_west/zarr.json +54 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/abs_time/c/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/abs_time/zarr.json +47 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/bry_time/c/0 +0 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/bry_time/zarr.json +48 -0
- roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_unified_climatology.zarr/diatC_east/c/0/0/0 +0 -0
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- {roms_tools-2.6.2.dist-info → roms_tools-3.0.0.dist-info}/top_level.txt +0 -0
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import logging
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from datetime import datetime, timedelta
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from pathlib import Path
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import numpy as np
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import pytest
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import xarray as xr
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from pydantic import ValidationError
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from conftest import calculate_file_hash
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from roms_tools import CDRForcing, Grid, TracerPerturbation, VolumeRelease
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from roms_tools.constants import NUM_TRACERS
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from roms_tools.setup.cdr_forcing import (
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CDRForcingDatasetBuilder,
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ReleaseCollector,
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ReleaseSimulationManager,
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)
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from roms_tools.setup.cdr_release import ReleaseType
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try:
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import xesmf # type: ignore
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except ImportError:
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xesmf = None
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class TestReleaseSimulationManager:
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def setup_method(self):
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self.grid = Grid(
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nx=18,
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ny=18,
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size_x=800,
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size_y=800,
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center_lon=-18,
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center_lat=65,
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rot=0,
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N=3,
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) # grid surrounding Iceland
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self.grid_that_straddles = Grid(
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nx=18,
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ny=18,
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size_x=800,
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size_y=800,
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center_lon=0,
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center_lat=65,
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rot=0,
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N=3,
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) # grid that straddles dateline
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self.valid_iceland_release_location = {
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"lat": 66.0,
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"lon": -25.0,
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"depth": 50.0,
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} # release location consistent with Iceland grid
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self.volume_release_without_times = VolumeRelease(
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name="vol_iceland_without_times",
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**self.valid_iceland_release_location,
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volume_fluxes=100.0,
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)
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self.volume_release_with_times = VolumeRelease(
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name="vol_iceland_with_times",
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**self.valid_iceland_release_location,
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times=[datetime(2022, 1, 1), datetime(2022, 1, 3), datetime(2022, 1, 5)],
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volume_fluxes=[1.0, 2.0, 3.0],
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tracer_concentrations={
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"DIC": [10.0, 20.0, 30.0],
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"temp": 10.0,
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"salt": 35.0,
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},
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)
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self.tracer_perturbation_without_times = TracerPerturbation(
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name="pert_iceland_without_times",
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**self.valid_iceland_release_location,
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tracer_fluxes={"ALK": 100.0},
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)
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self.tracer_perturbation_with_times = TracerPerturbation(
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name="pert_iceland_with_times",
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**self.valid_iceland_release_location,
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times=[datetime(2022, 1, 1), datetime(2022, 1, 3), datetime(2022, 1, 5)],
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tracer_fluxes={
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"DIC": [10.0, 20.0, 30.0],
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},
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)
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self.start_time = datetime(2022, 1, 1)
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self.end_time = datetime(2022, 12, 31)
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85
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def test_volume_release_correctly_extended(self):
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87
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# Save copies of mutable fields before they are modified by ReleaseSimulationManager
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times = self.volume_release_with_times.times.copy() # list
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volume_fluxes = (
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self.volume_release_with_times.volume_fluxes.values.copy()
|
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91
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) # list
|
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92
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tracer_concentrations_dic = (
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self.volume_release_with_times.tracer_concentrations["DIC"].values.copy()
|
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94
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) # list
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95
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tracer_concentrations_temp = (
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self.volume_release_with_times.tracer_concentrations["temp"].values
|
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) # float, no copy needed
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ReleaseSimulationManager(
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release=self.volume_release_with_times,
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grid=None,
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start_time=self.start_time,
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end_time=self.end_time,
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)
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# check that release was properly extended to end points
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assert self.volume_release_with_times.times == [*times, self.end_time]
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108
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assert self.volume_release_with_times.volume_fluxes.values == [
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*volume_fluxes,
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0.0,
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111
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]
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assert self.volume_release_with_times.tracer_concentrations["DIC"].values == [
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*tracer_concentrations_dic,
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tracer_concentrations_dic[-1],
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]
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116
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assert self.volume_release_with_times.tracer_concentrations[
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"temp"
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118
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].values == 4 * [tracer_concentrations_temp]
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119
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120
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def test_tracer_perturbation_correctly_extended(self):
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121
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122
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# Save copies of mutable fields before they are modified by ReleaseSimulationManager
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123
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times = self.tracer_perturbation_with_times.times.copy() # list
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124
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tracer_fluxes_dic = self.tracer_perturbation_with_times.tracer_fluxes[
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"DIC"
|
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126
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+
].values.copy() # list
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127
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tracer_fluxes_alk = self.tracer_perturbation_with_times.tracer_fluxes[
|
|
128
|
+
"ALK"
|
|
129
|
+
].values # float, no copy needed
|
|
130
|
+
|
|
131
|
+
ReleaseSimulationManager(
|
|
132
|
+
release=self.tracer_perturbation_with_times,
|
|
133
|
+
grid=None,
|
|
134
|
+
start_time=self.start_time,
|
|
135
|
+
end_time=self.end_time,
|
|
136
|
+
)
|
|
137
|
+
|
|
138
|
+
# check that release was properly extended to end points
|
|
139
|
+
assert self.tracer_perturbation_with_times.times == [*times, self.end_time]
|
|
140
|
+
assert self.tracer_perturbation_with_times.tracer_fluxes["DIC"].values == [
|
|
141
|
+
*tracer_fluxes_dic,
|
|
142
|
+
0.0,
|
|
143
|
+
]
|
|
144
|
+
assert self.tracer_perturbation_with_times.tracer_fluxes["ALK"].values == 4 * [
|
|
145
|
+
tracer_fluxes_alk
|
|
146
|
+
]
|
|
147
|
+
|
|
148
|
+
def test_release_starts_too_early(self):
|
|
149
|
+
|
|
150
|
+
for release in [
|
|
151
|
+
self.volume_release_with_times,
|
|
152
|
+
self.tracer_perturbation_with_times,
|
|
153
|
+
]:
|
|
154
|
+
times = release.times
|
|
155
|
+
start_time = times[0] + timedelta(days=1)
|
|
156
|
+
end_time = times[-1] + timedelta(days=1)
|
|
157
|
+
|
|
158
|
+
with pytest.raises(ValueError, match="before start_time"):
|
|
159
|
+
ReleaseSimulationManager(
|
|
160
|
+
release=release,
|
|
161
|
+
grid=None,
|
|
162
|
+
start_time=start_time,
|
|
163
|
+
end_time=end_time,
|
|
164
|
+
)
|
|
165
|
+
|
|
166
|
+
def test_release_ends_too_late(self):
|
|
167
|
+
|
|
168
|
+
for release in [
|
|
169
|
+
self.volume_release_with_times,
|
|
170
|
+
self.tracer_perturbation_with_times,
|
|
171
|
+
]:
|
|
172
|
+
times = release.times
|
|
173
|
+
start_time = times[0] - timedelta(days=1)
|
|
174
|
+
end_time = times[-1] - timedelta(days=1)
|
|
175
|
+
|
|
176
|
+
with pytest.raises(ValueError, match="after end_time"):
|
|
177
|
+
ReleaseSimulationManager(
|
|
178
|
+
release=release,
|
|
179
|
+
grid=None,
|
|
180
|
+
start_time=start_time,
|
|
181
|
+
end_time=end_time,
|
|
182
|
+
)
|
|
183
|
+
|
|
184
|
+
def test_warning_no_grid(self, caplog):
|
|
185
|
+
|
|
186
|
+
for release in [
|
|
187
|
+
self.volume_release_with_times,
|
|
188
|
+
self.tracer_perturbation_with_times,
|
|
189
|
+
]:
|
|
190
|
+
|
|
191
|
+
caplog.clear()
|
|
192
|
+
with caplog.at_level(logging.WARNING):
|
|
193
|
+
ReleaseSimulationManager(
|
|
194
|
+
release=release,
|
|
195
|
+
grid=None,
|
|
196
|
+
start_time=self.start_time,
|
|
197
|
+
end_time=self.end_time,
|
|
198
|
+
)
|
|
199
|
+
|
|
200
|
+
assert "Grid not provided" in caplog.text
|
|
201
|
+
|
|
202
|
+
def test_invalid_release_longitude(self):
|
|
203
|
+
"""Test that error is raised if release location is outside grid."""
|
|
204
|
+
|
|
205
|
+
# Define release location both outside of Iceland grid and grid that straddles dateline
|
|
206
|
+
lon0 = -30
|
|
207
|
+
lat0 = 60
|
|
208
|
+
depth0 = 0
|
|
209
|
+
|
|
210
|
+
for lon in [lon0, lon0 - 360, lon0 + 360]:
|
|
211
|
+
|
|
212
|
+
params = {"lon": lon, "lat": lat0, "depth": depth0}
|
|
213
|
+
|
|
214
|
+
for grid in [self.grid, self.grid_that_straddles]:
|
|
215
|
+
for release in [
|
|
216
|
+
VolumeRelease(name="vol", **params),
|
|
217
|
+
TracerPerturbation(name="vol", **params),
|
|
218
|
+
]:
|
|
219
|
+
with pytest.raises(ValueError, match="outside of the grid domain"):
|
|
220
|
+
ReleaseSimulationManager(
|
|
221
|
+
release=release,
|
|
222
|
+
grid=grid,
|
|
223
|
+
start_time=self.start_time,
|
|
224
|
+
end_time=self.end_time,
|
|
225
|
+
)
|
|
226
|
+
|
|
227
|
+
def test_invalid_release_location(self):
|
|
228
|
+
"""Test that error is raised if release location is outside grid or on land."""
|
|
229
|
+
|
|
230
|
+
# Release location too close to boundary of Iceland domain; lat_rho[0, 0] = 60.97, lon_rho[0, 0] = 334.17
|
|
231
|
+
params = {"lon": 334.17, "lat": 60.97, "depth": 0.0}
|
|
232
|
+
for release in [
|
|
233
|
+
VolumeRelease(name="vol", **params),
|
|
234
|
+
TracerPerturbation(name="pert", **params),
|
|
235
|
+
]:
|
|
236
|
+
with pytest.raises(ValueError, match="too close to the grid boundary"):
|
|
237
|
+
ReleaseSimulationManager(
|
|
238
|
+
release=release,
|
|
239
|
+
grid=self.grid,
|
|
240
|
+
start_time=self.start_time,
|
|
241
|
+
end_time=self.end_time,
|
|
242
|
+
)
|
|
243
|
+
|
|
244
|
+
# Release location lies on land
|
|
245
|
+
params = {"lon": -20, "lat": 64.5, "depth": 0.0}
|
|
246
|
+
for release in [
|
|
247
|
+
VolumeRelease(name="vol", **params),
|
|
248
|
+
TracerPerturbation(name="vol", **params),
|
|
249
|
+
]:
|
|
250
|
+
with pytest.raises(ValueError, match="on land"):
|
|
251
|
+
ReleaseSimulationManager(
|
|
252
|
+
release=release,
|
|
253
|
+
grid=self.grid,
|
|
254
|
+
start_time=self.start_time,
|
|
255
|
+
end_time=self.end_time,
|
|
256
|
+
)
|
|
257
|
+
|
|
258
|
+
# Release location lies below seafloor
|
|
259
|
+
invalid_depth = 4000
|
|
260
|
+
|
|
261
|
+
for valid_release in [
|
|
262
|
+
self.volume_release_without_times,
|
|
263
|
+
self.tracer_perturbation_without_times,
|
|
264
|
+
]:
|
|
265
|
+
params = {
|
|
266
|
+
"lon": valid_release.lon,
|
|
267
|
+
"lat": valid_release.lat,
|
|
268
|
+
"depth": invalid_depth,
|
|
269
|
+
}
|
|
270
|
+
|
|
271
|
+
if isinstance(valid_release, VolumeRelease):
|
|
272
|
+
release = VolumeRelease(name="vol", **params)
|
|
273
|
+
elif isinstance(valid_release, TracerPerturbation):
|
|
274
|
+
release = VolumeRelease(name="pert", **params)
|
|
275
|
+
with pytest.raises(ValueError, match="below the seafloor"):
|
|
276
|
+
ReleaseSimulationManager(
|
|
277
|
+
release=release,
|
|
278
|
+
grid=self.grid,
|
|
279
|
+
start_time=self.start_time,
|
|
280
|
+
end_time=self.end_time,
|
|
281
|
+
)
|
|
282
|
+
|
|
283
|
+
|
|
284
|
+
class TestReleaseCollector:
|
|
285
|
+
def setup_method(self):
|
|
286
|
+
self.volume_release = VolumeRelease(
|
|
287
|
+
name="vol", lat=66, lon=-25, depth=50, volume_fluxes=100
|
|
288
|
+
)
|
|
289
|
+
self.another_volume_release = VolumeRelease(
|
|
290
|
+
name="vol2", lat=66, lon=-25, depth=50, volume_fluxes=100
|
|
291
|
+
)
|
|
292
|
+
self.tracer_perturbation = TracerPerturbation(
|
|
293
|
+
name="pert", lat=66, lon=-25, depth=50, tracer_fluxes={"ALK": 100}
|
|
294
|
+
)
|
|
295
|
+
self.another_tracer_perturbation = TracerPerturbation(
|
|
296
|
+
name="pert2", lat=66, lon=-25, depth=50, tracer_fluxes={"ALK": 100}
|
|
297
|
+
)
|
|
298
|
+
|
|
299
|
+
def test_check_unique_name(self):
|
|
300
|
+
with pytest.raises(ValidationError):
|
|
301
|
+
ReleaseCollector(releases=[self.volume_release, self.volume_release])
|
|
302
|
+
with pytest.raises(ValidationError):
|
|
303
|
+
ReleaseCollector(
|
|
304
|
+
releases=[self.tracer_perturbation, self.tracer_perturbation]
|
|
305
|
+
)
|
|
306
|
+
|
|
307
|
+
def test_raises_inconsistent_release_type(self):
|
|
308
|
+
|
|
309
|
+
with pytest.raises(
|
|
310
|
+
ValidationError, match="Not all releases have the same type"
|
|
311
|
+
):
|
|
312
|
+
ReleaseCollector(releases=[self.volume_release, self.tracer_perturbation])
|
|
313
|
+
|
|
314
|
+
def test_determine_release_type(self):
|
|
315
|
+
"""Test that release type is correctly inferred."""
|
|
316
|
+
|
|
317
|
+
collector = ReleaseCollector(releases=[self.volume_release])
|
|
318
|
+
assert collector.release_type == ReleaseType.volume
|
|
319
|
+
|
|
320
|
+
collector = ReleaseCollector(
|
|
321
|
+
releases=[self.volume_release, self.another_volume_release]
|
|
322
|
+
)
|
|
323
|
+
assert collector.release_type == ReleaseType.volume
|
|
324
|
+
|
|
325
|
+
collector = ReleaseCollector(releases=[self.tracer_perturbation])
|
|
326
|
+
assert collector.release_type == ReleaseType.tracer_perturbation
|
|
327
|
+
|
|
328
|
+
collector = ReleaseCollector(
|
|
329
|
+
releases=[self.tracer_perturbation, self.another_tracer_perturbation]
|
|
330
|
+
)
|
|
331
|
+
assert collector.release_type == ReleaseType.tracer_perturbation
|
|
332
|
+
|
|
333
|
+
|
|
334
|
+
class TestCDRForcingDatasetBuilder:
|
|
335
|
+
def setup_method(self):
|
|
336
|
+
self.start_time = datetime(2022, 1, 1)
|
|
337
|
+
self.end_time = datetime(2022, 12, 31)
|
|
338
|
+
|
|
339
|
+
first_volume_release = VolumeRelease(
|
|
340
|
+
name="first_release",
|
|
341
|
+
lat=66.0,
|
|
342
|
+
lon=-25.0,
|
|
343
|
+
depth=50.0,
|
|
344
|
+
times=[datetime(2022, 1, 1), datetime(2022, 1, 3), datetime(2022, 1, 5)],
|
|
345
|
+
volume_fluxes=[1.0, 2.0, 3.0],
|
|
346
|
+
tracer_concentrations={
|
|
347
|
+
"DIC": [10.0, 20.0, 30.0],
|
|
348
|
+
"temp": 10.0,
|
|
349
|
+
"salt": 35.0,
|
|
350
|
+
},
|
|
351
|
+
)
|
|
352
|
+
|
|
353
|
+
second_volume_release = VolumeRelease(
|
|
354
|
+
name="second_release",
|
|
355
|
+
lon=first_volume_release.lon - 1,
|
|
356
|
+
lat=first_volume_release.lat - 1,
|
|
357
|
+
depth=first_volume_release.depth - 1,
|
|
358
|
+
times=[
|
|
359
|
+
datetime(2022, 1, 2),
|
|
360
|
+
datetime(2022, 1, 4),
|
|
361
|
+
datetime(2022, 1, 5),
|
|
362
|
+
],
|
|
363
|
+
volume_fluxes=[2.0, 4.0, 10.0],
|
|
364
|
+
tracer_concentrations={"DIC": [20.0, 40.0, 100.0]},
|
|
365
|
+
)
|
|
366
|
+
|
|
367
|
+
first_tracer_perturbation = TracerPerturbation(
|
|
368
|
+
name="first_release",
|
|
369
|
+
lat=66.0,
|
|
370
|
+
lon=-25.0,
|
|
371
|
+
depth=50.0,
|
|
372
|
+
times=[datetime(2022, 1, 1), datetime(2022, 1, 3), datetime(2022, 1, 5)],
|
|
373
|
+
tracer_fluxes={
|
|
374
|
+
"DIC": [10.0, 20.0, 30.0],
|
|
375
|
+
},
|
|
376
|
+
)
|
|
377
|
+
|
|
378
|
+
second_tracer_perturbation = TracerPerturbation(
|
|
379
|
+
name="second_release",
|
|
380
|
+
lon=first_tracer_perturbation.lon - 1,
|
|
381
|
+
lat=first_tracer_perturbation.lat - 1,
|
|
382
|
+
depth=first_tracer_perturbation.depth - 1,
|
|
383
|
+
times=[
|
|
384
|
+
datetime(2022, 1, 2),
|
|
385
|
+
datetime(2022, 1, 4),
|
|
386
|
+
datetime(2022, 1, 5),
|
|
387
|
+
],
|
|
388
|
+
tracer_fluxes={"DIC": [20.0, 40.0, 100.0]},
|
|
389
|
+
)
|
|
390
|
+
|
|
391
|
+
# Modify all releases including extending it to the endpoints
|
|
392
|
+
for release in [
|
|
393
|
+
first_volume_release,
|
|
394
|
+
second_volume_release,
|
|
395
|
+
first_tracer_perturbation,
|
|
396
|
+
second_tracer_perturbation,
|
|
397
|
+
]:
|
|
398
|
+
ReleaseSimulationManager(
|
|
399
|
+
release=release,
|
|
400
|
+
start_time=self.start_time,
|
|
401
|
+
end_time=self.end_time,
|
|
402
|
+
)
|
|
403
|
+
|
|
404
|
+
self.first_volume_release = first_volume_release
|
|
405
|
+
self.second_volume_release = second_volume_release
|
|
406
|
+
self.first_tracer_perturbation = first_tracer_perturbation
|
|
407
|
+
self.second_tracer_perturbation = second_tracer_perturbation
|
|
408
|
+
|
|
409
|
+
def check_ds_dims_and_coords(
|
|
410
|
+
self, ds, num_times, num_releases, release_type=VolumeRelease
|
|
411
|
+
):
|
|
412
|
+
"""Assert expected dimensions and coordinates for a CDR dataset."""
|
|
413
|
+
|
|
414
|
+
# Dimensions
|
|
415
|
+
assert ds.time.size == num_times
|
|
416
|
+
assert ds.ncdr.size == num_releases
|
|
417
|
+
assert ds.ntracers.size == NUM_TRACERS
|
|
418
|
+
|
|
419
|
+
# Coordinates and metadata
|
|
420
|
+
assert ds.release_name.size == num_releases
|
|
421
|
+
assert ds.tracer_name.size == NUM_TRACERS
|
|
422
|
+
assert ds.tracer_unit.size == NUM_TRACERS
|
|
423
|
+
assert ds.tracer_long_name.size == NUM_TRACERS
|
|
424
|
+
assert ds.cdr_time.size == num_times
|
|
425
|
+
assert ds.cdr_lon.size == num_releases
|
|
426
|
+
assert ds.cdr_lat.size == num_releases
|
|
427
|
+
assert ds.cdr_dep.size == num_releases
|
|
428
|
+
assert ds.cdr_hsc.size == num_releases
|
|
429
|
+
assert ds.cdr_vsc.size == num_releases
|
|
430
|
+
|
|
431
|
+
if release_type == VolumeRelease:
|
|
432
|
+
assert ds.cdr_volume.shape == (num_times, num_releases)
|
|
433
|
+
assert ds.cdr_tracer.shape == (num_times, NUM_TRACERS, num_releases)
|
|
434
|
+
elif release_type == TracerPerturbation:
|
|
435
|
+
assert ds.cdr_trcflx.shape == (num_times, NUM_TRACERS, num_releases)
|
|
436
|
+
|
|
437
|
+
def check_ds_name_and_location(self, ds, release, ncdr_index):
|
|
438
|
+
"""Assert expected release name and location for a CDR dataset."""
|
|
439
|
+
|
|
440
|
+
# Name
|
|
441
|
+
assert release.name in ds["release_name"].values
|
|
442
|
+
|
|
443
|
+
# Location
|
|
444
|
+
assert ds["cdr_lon"].isel(ncdr=ncdr_index).values == release.lon
|
|
445
|
+
assert ds["cdr_lat"].isel(ncdr=ncdr_index).values == release.lat
|
|
446
|
+
assert ds["cdr_dep"].isel(ncdr=ncdr_index).values == release.depth
|
|
447
|
+
assert ds["cdr_hsc"].isel(ncdr=ncdr_index).values == release.hsc
|
|
448
|
+
assert ds["cdr_vsc"].isel(ncdr=ncdr_index).values == release.vsc
|
|
449
|
+
|
|
450
|
+
# TODO: Check for tracer metadata
|
|
451
|
+
|
|
452
|
+
def test_build_with_single_volume_release(self):
|
|
453
|
+
|
|
454
|
+
builder = CDRForcingDatasetBuilder(
|
|
455
|
+
releases=[self.first_volume_release],
|
|
456
|
+
model_reference_date=datetime(2000, 1, 1),
|
|
457
|
+
release_type=ReleaseType.volume,
|
|
458
|
+
)
|
|
459
|
+
ds = builder.build()
|
|
460
|
+
|
|
461
|
+
num_times = len(self.first_volume_release.times)
|
|
462
|
+
num_releases = 1
|
|
463
|
+
self.check_ds_dims_and_coords(
|
|
464
|
+
ds, num_times, num_releases, release_type=builder.release_type
|
|
465
|
+
)
|
|
466
|
+
|
|
467
|
+
ncdr_index = 0
|
|
468
|
+
self.check_ds_name_and_location(ds, self.first_volume_release, ncdr_index)
|
|
469
|
+
|
|
470
|
+
# Time values
|
|
471
|
+
assert np.array_equal(
|
|
472
|
+
ds["time"].values,
|
|
473
|
+
np.array(self.first_volume_release.times, dtype="datetime64[ns]"),
|
|
474
|
+
)
|
|
475
|
+
|
|
476
|
+
# Volume flux values
|
|
477
|
+
np.testing.assert_allclose(
|
|
478
|
+
ds.cdr_volume.isel(ncdr=ncdr_index).values,
|
|
479
|
+
self.first_volume_release.volume_fluxes.values,
|
|
480
|
+
)
|
|
481
|
+
|
|
482
|
+
# Tracer concentration values
|
|
483
|
+
tracer_index = {name: i for i, name in enumerate(ds.tracer_name.values)}
|
|
484
|
+
for tracer, expected in self.first_volume_release.tracer_concentrations.items():
|
|
485
|
+
i = tracer_index[tracer]
|
|
486
|
+
np.testing.assert_allclose(
|
|
487
|
+
ds.cdr_tracer.isel(ncdr=ncdr_index, ntracers=i), expected.values
|
|
488
|
+
)
|
|
489
|
+
|
|
490
|
+
def test_build_with_single_tracer_perturbation(self):
|
|
491
|
+
|
|
492
|
+
builder = CDRForcingDatasetBuilder(
|
|
493
|
+
releases=[self.first_tracer_perturbation],
|
|
494
|
+
model_reference_date=datetime(2000, 1, 1),
|
|
495
|
+
release_type=ReleaseType.tracer_perturbation,
|
|
496
|
+
)
|
|
497
|
+
ds = builder.build()
|
|
498
|
+
|
|
499
|
+
num_times = len(self.first_tracer_perturbation.times)
|
|
500
|
+
num_releases = 1
|
|
501
|
+
self.check_ds_dims_and_coords(
|
|
502
|
+
ds, num_times, num_releases, release_type=builder.release_type
|
|
503
|
+
)
|
|
504
|
+
|
|
505
|
+
ncdr_index = 0
|
|
506
|
+
self.check_ds_name_and_location(ds, self.first_tracer_perturbation, ncdr_index)
|
|
507
|
+
|
|
508
|
+
# Time values
|
|
509
|
+
assert np.array_equal(
|
|
510
|
+
ds["time"].values,
|
|
511
|
+
np.array(self.first_tracer_perturbation.times, dtype="datetime64[ns]"),
|
|
512
|
+
)
|
|
513
|
+
|
|
514
|
+
# Tracer flux values
|
|
515
|
+
tracer_index = {name: i for i, name in enumerate(ds.tracer_name.values)}
|
|
516
|
+
for tracer, expected in self.first_tracer_perturbation.tracer_fluxes.items():
|
|
517
|
+
i = tracer_index[tracer]
|
|
518
|
+
np.testing.assert_allclose(
|
|
519
|
+
ds.cdr_trcflx.isel(ncdr=ncdr_index, ntracers=i), expected.values
|
|
520
|
+
)
|
|
521
|
+
|
|
522
|
+
def test_build_with_multiple_volume_releases(self):
|
|
523
|
+
|
|
524
|
+
builder = CDRForcingDatasetBuilder(
|
|
525
|
+
releases=[self.first_volume_release, self.second_volume_release],
|
|
526
|
+
model_reference_date=datetime(2000, 1, 1),
|
|
527
|
+
release_type=ReleaseType.volume,
|
|
528
|
+
)
|
|
529
|
+
ds = builder.build()
|
|
530
|
+
|
|
531
|
+
# expected times is the union of the times of the first and second release without duplication
|
|
532
|
+
expected_times = [
|
|
533
|
+
datetime(2022, 1, 1),
|
|
534
|
+
datetime(2022, 1, 2),
|
|
535
|
+
datetime(2022, 1, 3),
|
|
536
|
+
datetime(2022, 1, 4),
|
|
537
|
+
datetime(2022, 1, 5),
|
|
538
|
+
datetime(2022, 12, 31),
|
|
539
|
+
]
|
|
540
|
+
num_times = len(expected_times)
|
|
541
|
+
num_releases = 2
|
|
542
|
+
self.check_ds_dims_and_coords(
|
|
543
|
+
ds, num_times, num_releases, release_type=builder.release_type
|
|
544
|
+
)
|
|
545
|
+
|
|
546
|
+
self.check_ds_name_and_location(ds, self.first_volume_release, 0)
|
|
547
|
+
self.check_ds_name_and_location(ds, self.second_volume_release, 1)
|
|
548
|
+
|
|
549
|
+
# Time values
|
|
550
|
+
assert np.array_equal(
|
|
551
|
+
ds["time"].values, np.array(expected_times, dtype="datetime64[ns]")
|
|
552
|
+
)
|
|
553
|
+
|
|
554
|
+
# Volume flux values first release
|
|
555
|
+
ncdr_index = 0
|
|
556
|
+
expected_volume_fluxes = [1.0, 1.5, 2.0, 2.5, 3.0, 0.0]
|
|
557
|
+
assert np.allclose(
|
|
558
|
+
ds["cdr_volume"].isel(ncdr=ncdr_index).values,
|
|
559
|
+
np.array(expected_volume_fluxes),
|
|
560
|
+
)
|
|
561
|
+
|
|
562
|
+
# Volume flux values second release
|
|
563
|
+
ncdr_index = 1
|
|
564
|
+
expected_volume_fluxes = [0.0, 2.0, 3.0, 4.0, 10.0, 0.0]
|
|
565
|
+
assert np.allclose(
|
|
566
|
+
ds["cdr_volume"].isel(ncdr=ncdr_index).values,
|
|
567
|
+
np.array(expected_volume_fluxes),
|
|
568
|
+
)
|
|
569
|
+
|
|
570
|
+
# Tracer concentration values first release
|
|
571
|
+
ncdr_index = 0
|
|
572
|
+
dic_index = 9
|
|
573
|
+
|
|
574
|
+
expected_dics = [10.0, 15.0, 20.0, 25.0, 30.0, 30.0]
|
|
575
|
+
assert np.allclose(
|
|
576
|
+
ds["cdr_tracer"].isel(ncdr=ncdr_index, ntracers=dic_index).values,
|
|
577
|
+
np.array(expected_dics),
|
|
578
|
+
)
|
|
579
|
+
|
|
580
|
+
# Tracer concentration values second release
|
|
581
|
+
ncdr_index = 1
|
|
582
|
+
|
|
583
|
+
expected_dics = [20.0, 20.0, 30.0, 40.0, 100.0, 100.0]
|
|
584
|
+
assert np.allclose(
|
|
585
|
+
ds["cdr_tracer"].isel(ncdr=ncdr_index, ntracers=dic_index).values,
|
|
586
|
+
np.array(expected_dics),
|
|
587
|
+
)
|
|
588
|
+
|
|
589
|
+
def test_build_with_multiple_tracer_perturbations(self):
|
|
590
|
+
|
|
591
|
+
builder = CDRForcingDatasetBuilder(
|
|
592
|
+
releases=[self.first_tracer_perturbation, self.second_tracer_perturbation],
|
|
593
|
+
model_reference_date=datetime(2000, 1, 1),
|
|
594
|
+
release_type=ReleaseType.tracer_perturbation,
|
|
595
|
+
)
|
|
596
|
+
ds = builder.build()
|
|
597
|
+
|
|
598
|
+
# expected times is the union of the times of the first and second release without duplication
|
|
599
|
+
expected_times = [
|
|
600
|
+
datetime(2022, 1, 1),
|
|
601
|
+
datetime(2022, 1, 2),
|
|
602
|
+
datetime(2022, 1, 3),
|
|
603
|
+
datetime(2022, 1, 4),
|
|
604
|
+
datetime(2022, 1, 5),
|
|
605
|
+
datetime(2022, 12, 31),
|
|
606
|
+
]
|
|
607
|
+
num_times = len(expected_times)
|
|
608
|
+
num_releases = 2
|
|
609
|
+
self.check_ds_dims_and_coords(
|
|
610
|
+
ds, num_times, num_releases, release_type=builder.release_type
|
|
611
|
+
)
|
|
612
|
+
|
|
613
|
+
self.check_ds_name_and_location(ds, self.first_tracer_perturbation, 0)
|
|
614
|
+
self.check_ds_name_and_location(ds, self.second_tracer_perturbation, 1)
|
|
615
|
+
|
|
616
|
+
# Time values
|
|
617
|
+
assert np.array_equal(
|
|
618
|
+
ds["time"].values, np.array(expected_times, dtype="datetime64[ns]")
|
|
619
|
+
)
|
|
620
|
+
|
|
621
|
+
# Tracer flux values first release
|
|
622
|
+
ncdr_index = 0
|
|
623
|
+
dic_index = 9
|
|
624
|
+
|
|
625
|
+
expected_dics = [10.0, 15.0, 20.0, 25.0, 30.0, 0.0]
|
|
626
|
+
assert np.allclose(
|
|
627
|
+
ds["cdr_trcflx"].isel(ncdr=ncdr_index, ntracers=dic_index).values,
|
|
628
|
+
np.array(expected_dics),
|
|
629
|
+
)
|
|
630
|
+
|
|
631
|
+
# Tracer flux values second release
|
|
632
|
+
ncdr_index = 1
|
|
633
|
+
|
|
634
|
+
expected_dics = [0.0, 20.0, 30.0, 40.0, 100.0, 0.0]
|
|
635
|
+
assert np.allclose(
|
|
636
|
+
ds["cdr_trcflx"].isel(ncdr=ncdr_index, ntracers=dic_index).values,
|
|
637
|
+
np.array(expected_dics),
|
|
638
|
+
)
|
|
639
|
+
|
|
640
|
+
|
|
641
|
+
class TestCDRForcing:
|
|
642
|
+
def setup_method(self):
|
|
643
|
+
self.start_time = datetime(2022, 1, 1)
|
|
644
|
+
self.end_time = datetime(2022, 12, 31)
|
|
645
|
+
|
|
646
|
+
first_volume_release = VolumeRelease(
|
|
647
|
+
name="first_release",
|
|
648
|
+
lat=66.0,
|
|
649
|
+
lon=-25.0,
|
|
650
|
+
depth=50.0,
|
|
651
|
+
hsc=0.0,
|
|
652
|
+
vsc=0.0,
|
|
653
|
+
times=[datetime(2022, 1, 1), datetime(2022, 1, 3), datetime(2022, 1, 5)],
|
|
654
|
+
volume_fluxes=[1.0, 2.0, 3.0],
|
|
655
|
+
tracer_concentrations={
|
|
656
|
+
"DIC": [10.0, 20.0, 30.0],
|
|
657
|
+
"temp": 10.0,
|
|
658
|
+
"salt": 35.0,
|
|
659
|
+
},
|
|
660
|
+
)
|
|
661
|
+
|
|
662
|
+
second_volume_release = VolumeRelease(
|
|
663
|
+
name="second_release",
|
|
664
|
+
lon=first_volume_release.lon + 360,
|
|
665
|
+
lat=first_volume_release.lat,
|
|
666
|
+
depth=first_volume_release.depth,
|
|
667
|
+
hsc=40000.0,
|
|
668
|
+
vsc=0.0,
|
|
669
|
+
times=[
|
|
670
|
+
datetime(2022, 1, 2),
|
|
671
|
+
datetime(2022, 1, 4),
|
|
672
|
+
datetime(2022, 1, 5),
|
|
673
|
+
],
|
|
674
|
+
volume_fluxes=[2.0, 4.0, 10.0],
|
|
675
|
+
tracer_concentrations={"DIC": [20.0, 40.0, 100.0]},
|
|
676
|
+
)
|
|
677
|
+
|
|
678
|
+
first_tracer_perturbation = TracerPerturbation(
|
|
679
|
+
name="first_release",
|
|
680
|
+
lat=66.0,
|
|
681
|
+
lon=-25.0,
|
|
682
|
+
depth=50.0,
|
|
683
|
+
hsc=40000.0,
|
|
684
|
+
vsc=100.0,
|
|
685
|
+
times=[datetime(2022, 1, 1), datetime(2022, 1, 3), datetime(2022, 1, 5)],
|
|
686
|
+
tracer_fluxes={
|
|
687
|
+
"DIC": [10.0, 20.0, 30.0],
|
|
688
|
+
},
|
|
689
|
+
)
|
|
690
|
+
|
|
691
|
+
second_tracer_perturbation = TracerPerturbation(
|
|
692
|
+
name="second_release",
|
|
693
|
+
lon=first_tracer_perturbation.lon + 360,
|
|
694
|
+
lat=first_tracer_perturbation.lat,
|
|
695
|
+
depth=first_tracer_perturbation.depth,
|
|
696
|
+
hsc=0.0,
|
|
697
|
+
vsc=10.0,
|
|
698
|
+
times=[
|
|
699
|
+
datetime(2022, 1, 2),
|
|
700
|
+
datetime(2022, 1, 4),
|
|
701
|
+
datetime(2022, 1, 5),
|
|
702
|
+
],
|
|
703
|
+
tracer_fluxes={"DIC": [20.0, 40.0, 100.0]},
|
|
704
|
+
)
|
|
705
|
+
|
|
706
|
+
# Modify all releases including extending it to the endpoints
|
|
707
|
+
for release in [
|
|
708
|
+
first_volume_release,
|
|
709
|
+
second_volume_release,
|
|
710
|
+
first_tracer_perturbation,
|
|
711
|
+
second_tracer_perturbation,
|
|
712
|
+
]:
|
|
713
|
+
ReleaseSimulationManager(
|
|
714
|
+
release=release,
|
|
715
|
+
start_time=self.start_time,
|
|
716
|
+
end_time=self.end_time,
|
|
717
|
+
)
|
|
718
|
+
|
|
719
|
+
self.first_volume_release = first_volume_release
|
|
720
|
+
self.second_volume_release = second_volume_release
|
|
721
|
+
self.first_tracer_perturbation = first_tracer_perturbation
|
|
722
|
+
self.second_tracer_perturbation = second_tracer_perturbation
|
|
723
|
+
|
|
724
|
+
self.volume_release_cdr_forcing_without_grid = CDRForcing(
|
|
725
|
+
start_time=self.start_time,
|
|
726
|
+
end_time=self.end_time,
|
|
727
|
+
releases=[self.first_volume_release, self.second_volume_release],
|
|
728
|
+
)
|
|
729
|
+
self.tracer_perturbation_cdr_forcing_without_grid = CDRForcing(
|
|
730
|
+
start_time=self.start_time,
|
|
731
|
+
end_time=self.end_time,
|
|
732
|
+
releases=[self.first_tracer_perturbation, self.second_tracer_perturbation],
|
|
733
|
+
)
|
|
734
|
+
|
|
735
|
+
grid = Grid(
|
|
736
|
+
nx=18,
|
|
737
|
+
ny=18,
|
|
738
|
+
size_x=800,
|
|
739
|
+
size_y=800,
|
|
740
|
+
center_lon=-18,
|
|
741
|
+
center_lat=65,
|
|
742
|
+
rot=0,
|
|
743
|
+
N=3,
|
|
744
|
+
)
|
|
745
|
+
grid_that_straddles = Grid(
|
|
746
|
+
nx=18,
|
|
747
|
+
ny=18,
|
|
748
|
+
size_x=2500,
|
|
749
|
+
size_y=2500,
|
|
750
|
+
center_lon=0,
|
|
751
|
+
center_lat=65,
|
|
752
|
+
rot=0,
|
|
753
|
+
N=3,
|
|
754
|
+
) # grid that straddles dateline
|
|
755
|
+
|
|
756
|
+
self.volume_release_cdr_forcing = CDRForcing(
|
|
757
|
+
grid=grid,
|
|
758
|
+
start_time=self.start_time,
|
|
759
|
+
end_time=self.end_time,
|
|
760
|
+
releases=[self.first_volume_release, self.second_volume_release],
|
|
761
|
+
)
|
|
762
|
+
self.volume_release_cdr_forcing_with_straddling_grid = CDRForcing(
|
|
763
|
+
grid=grid_that_straddles,
|
|
764
|
+
start_time=self.start_time,
|
|
765
|
+
end_time=self.end_time,
|
|
766
|
+
releases=[self.first_volume_release, self.second_volume_release],
|
|
767
|
+
)
|
|
768
|
+
self.tracer_perturbation_cdr_forcing = CDRForcing(
|
|
769
|
+
grid=grid,
|
|
770
|
+
start_time=self.start_time,
|
|
771
|
+
end_time=self.end_time,
|
|
772
|
+
releases=[self.first_tracer_perturbation, self.second_tracer_perturbation],
|
|
773
|
+
)
|
|
774
|
+
self.tracer_perturbation_cdr_forcing_with_straddling_grid = CDRForcing(
|
|
775
|
+
grid=grid_that_straddles,
|
|
776
|
+
start_time=self.start_time,
|
|
777
|
+
end_time=self.end_time,
|
|
778
|
+
releases=[self.first_tracer_perturbation, self.second_tracer_perturbation],
|
|
779
|
+
)
|
|
780
|
+
|
|
781
|
+
def test_inconsistent_start_end_time(self):
|
|
782
|
+
|
|
783
|
+
start_time = datetime(2022, 5, 1)
|
|
784
|
+
end_time = datetime(2022, 5, 1)
|
|
785
|
+
with pytest.raises(ValueError, match="must be earlier"):
|
|
786
|
+
CDRForcing(
|
|
787
|
+
start_time=start_time,
|
|
788
|
+
end_time=end_time,
|
|
789
|
+
releases=[self.first_volume_release],
|
|
790
|
+
)
|
|
791
|
+
with pytest.raises(ValueError, match="must be earlier"):
|
|
792
|
+
CDRForcing(
|
|
793
|
+
start_time=start_time,
|
|
794
|
+
end_time=end_time,
|
|
795
|
+
releases=[self.first_tracer_perturbation],
|
|
796
|
+
)
|
|
797
|
+
|
|
798
|
+
def test_empty_release_list(self):
|
|
799
|
+
|
|
800
|
+
with pytest.raises(ValidationError):
|
|
801
|
+
CDRForcing(start_time=self.start_time, end_time=self.end_time)
|
|
802
|
+
|
|
803
|
+
def test_ds_attribute(self):
|
|
804
|
+
|
|
805
|
+
assert isinstance(self.volume_release_cdr_forcing_without_grid.ds, xr.Dataset)
|
|
806
|
+
assert isinstance(
|
|
807
|
+
self.tracer_perturbation_cdr_forcing_without_grid.ds, xr.Dataset
|
|
808
|
+
)
|
|
809
|
+
assert isinstance(self.volume_release_cdr_forcing.ds, xr.Dataset)
|
|
810
|
+
assert isinstance(self.tracer_perturbation_cdr_forcing.ds, xr.Dataset)
|
|
811
|
+
assert isinstance(
|
|
812
|
+
self.volume_release_cdr_forcing_with_straddling_grid.ds, xr.Dataset
|
|
813
|
+
)
|
|
814
|
+
assert isinstance(
|
|
815
|
+
self.tracer_perturbation_cdr_forcing_with_straddling_grid.ds, xr.Dataset
|
|
816
|
+
)
|
|
817
|
+
|
|
818
|
+
def test_plot_error_when_no_grid(self):
|
|
819
|
+
|
|
820
|
+
for cdr in [
|
|
821
|
+
self.volume_release_cdr_forcing_without_grid,
|
|
822
|
+
self.tracer_perturbation_cdr_forcing_without_grid,
|
|
823
|
+
]:
|
|
824
|
+
|
|
825
|
+
with pytest.raises(
|
|
826
|
+
ValueError, match="A grid must be provided for plotting"
|
|
827
|
+
):
|
|
828
|
+
cdr.plot_locations("all")
|
|
829
|
+
|
|
830
|
+
with pytest.raises(
|
|
831
|
+
ValueError, match="A grid must be provided for plotting"
|
|
832
|
+
):
|
|
833
|
+
cdr.plot_distribution("first_release")
|
|
834
|
+
|
|
835
|
+
def test_plot_volume_release(self):
|
|
836
|
+
|
|
837
|
+
for cdr in [
|
|
838
|
+
self.volume_release_cdr_forcing_without_grid,
|
|
839
|
+
self.volume_release_cdr_forcing,
|
|
840
|
+
self.volume_release_cdr_forcing_with_straddling_grid,
|
|
841
|
+
]:
|
|
842
|
+
cdr.plot_volume_flux()
|
|
843
|
+
cdr.plot_tracer_concentration("ALK")
|
|
844
|
+
cdr.plot_tracer_concentration("DIC")
|
|
845
|
+
|
|
846
|
+
self.volume_release_cdr_forcing.plot_locations()
|
|
847
|
+
self.volume_release_cdr_forcing.plot_locations(release_names=["first_release"])
|
|
848
|
+
|
|
849
|
+
def test_plot_tracer_perturbation(self):
|
|
850
|
+
|
|
851
|
+
for cdr in [
|
|
852
|
+
self.tracer_perturbation_cdr_forcing_without_grid,
|
|
853
|
+
self.tracer_perturbation_cdr_forcing,
|
|
854
|
+
self.tracer_perturbation_cdr_forcing_with_straddling_grid,
|
|
855
|
+
]:
|
|
856
|
+
cdr.plot_tracer_flux("ALK")
|
|
857
|
+
cdr.plot_tracer_flux("DIC")
|
|
858
|
+
|
|
859
|
+
self.tracer_perturbation_cdr_forcing.plot_locations()
|
|
860
|
+
self.tracer_perturbation_cdr_forcing.plot_locations(
|
|
861
|
+
release_names=["first_release"]
|
|
862
|
+
)
|
|
863
|
+
|
|
864
|
+
@pytest.mark.skipif(xesmf is None, reason="xesmf required")
|
|
865
|
+
def test_plot_distribution(self):
|
|
866
|
+
|
|
867
|
+
self.volume_release_cdr_forcing.plot_distribution("first_release")
|
|
868
|
+
self.volume_release_cdr_forcing_with_straddling_grid.plot_distribution(
|
|
869
|
+
"first_release"
|
|
870
|
+
)
|
|
871
|
+
self.tracer_perturbation_cdr_forcing.plot_distribution("first_release")
|
|
872
|
+
self.tracer_perturbation_cdr_forcing_with_straddling_grid.plot_distribution(
|
|
873
|
+
"first_release"
|
|
874
|
+
)
|
|
875
|
+
|
|
876
|
+
def test_plot_more_errors(self):
|
|
877
|
+
"""Test that error is raised on bad plot args or ambiguous release."""
|
|
878
|
+
|
|
879
|
+
with pytest.raises(ValueError, match="Invalid release"):
|
|
880
|
+
self.volume_release_cdr_forcing.plot_distribution(release_name="fake")
|
|
881
|
+
|
|
882
|
+
with pytest.raises(ValueError, match="Invalid releases"):
|
|
883
|
+
self.volume_release_cdr_forcing.plot_locations(release_names=["fake"])
|
|
884
|
+
|
|
885
|
+
with pytest.raises(ValueError, match="should be a string"):
|
|
886
|
+
self.volume_release_cdr_forcing.plot_locations(release_names=4)
|
|
887
|
+
|
|
888
|
+
with pytest.raises(ValueError, match="list must be strings"):
|
|
889
|
+
self.volume_release_cdr_forcing.plot_locations(release_names=[4])
|
|
890
|
+
|
|
891
|
+
def test_cdr_forcing_save(self, tmp_path):
|
|
892
|
+
"""Test save method."""
|
|
893
|
+
|
|
894
|
+
for cdr_forcing in [
|
|
895
|
+
self.volume_release_cdr_forcing,
|
|
896
|
+
self.tracer_perturbation_cdr_forcing,
|
|
897
|
+
]:
|
|
898
|
+
for file_str in ["test_cdr_forcing", "test_cdr_forcing.nc"]:
|
|
899
|
+
# Create a temporary filepath using the tmp_path fixture
|
|
900
|
+
for filepath in [tmp_path / file_str, str(tmp_path / file_str)]:
|
|
901
|
+
|
|
902
|
+
saved_filenames = cdr_forcing.save(filepath)
|
|
903
|
+
# Check if the .nc file was created
|
|
904
|
+
filepath = Path(filepath).with_suffix(".nc")
|
|
905
|
+
assert saved_filenames == [filepath]
|
|
906
|
+
assert filepath.exists()
|
|
907
|
+
# Clean up the .nc file
|
|
908
|
+
filepath.unlink()
|
|
909
|
+
|
|
910
|
+
def test_roundtrip_yaml(self, tmp_path):
|
|
911
|
+
"""Test that creating a CDRVolumePointSource object, saving its parameters to
|
|
912
|
+
yaml file, and re-opening yaml file creates the same object."""
|
|
913
|
+
|
|
914
|
+
for cdr_forcing in [
|
|
915
|
+
self.volume_release_cdr_forcing,
|
|
916
|
+
self.tracer_perturbation_cdr_forcing,
|
|
917
|
+
]:
|
|
918
|
+
# Create a temporary filepath using the tmp_path fixture
|
|
919
|
+
file_str = "test_yaml"
|
|
920
|
+
for filepath in [
|
|
921
|
+
tmp_path / file_str,
|
|
922
|
+
str(tmp_path / file_str),
|
|
923
|
+
]: # test for Path object and str
|
|
924
|
+
|
|
925
|
+
cdr_forcing.to_yaml(filepath)
|
|
926
|
+
|
|
927
|
+
cdr_forcing_from_file = CDRForcing.from_yaml(filepath)
|
|
928
|
+
|
|
929
|
+
assert cdr_forcing == cdr_forcing_from_file
|
|
930
|
+
|
|
931
|
+
filepath = Path(filepath)
|
|
932
|
+
filepath.unlink()
|
|
933
|
+
|
|
934
|
+
def test_files_have_same_hash(self, tmp_path):
|
|
935
|
+
"""Test that saving the same CDR forcing configuration to NetCDF twice results
|
|
936
|
+
in reproducible file hashes."""
|
|
937
|
+
|
|
938
|
+
for cdr_forcing in [
|
|
939
|
+
self.volume_release_cdr_forcing,
|
|
940
|
+
self.tracer_perturbation_cdr_forcing,
|
|
941
|
+
]:
|
|
942
|
+
yaml_filepath = tmp_path / "test_yaml.yaml"
|
|
943
|
+
filepath1 = tmp_path / "test1.nc"
|
|
944
|
+
filepath2 = tmp_path / "test2.nc"
|
|
945
|
+
|
|
946
|
+
cdr_forcing.to_yaml(yaml_filepath)
|
|
947
|
+
cdr_forcing.save(filepath1)
|
|
948
|
+
cdr_from_file = CDRForcing.from_yaml(yaml_filepath)
|
|
949
|
+
cdr_from_file.save(filepath2)
|
|
950
|
+
|
|
951
|
+
hash1 = calculate_file_hash(filepath1)
|
|
952
|
+
hash2 = calculate_file_hash(filepath2)
|
|
953
|
+
|
|
954
|
+
assert hash1 == hash2, f"Hashes do not match: {hash1} != {hash2}"
|
|
955
|
+
|
|
956
|
+
yaml_filepath.unlink()
|
|
957
|
+
filepath1.unlink()
|
|
958
|
+
filepath2.unlink()
|