roms-tools 2.3.0__py3-none-any.whl → 2.5.0__py3-none-any.whl

roms_tools/setup/boundary_forcing.py

@@ -3,13 +3,14 @@ import numpy as np
 from scipy.ndimage import label
 import logging
 import importlib.metadata
-from typing import Dict, Union, List
+from typing import Dict, Union, List, Optional
 from dataclasses import dataclass, field
 from datetime import datetime
 import matplotlib.pyplot as plt
 from pathlib import Path
 from roms_tools import Grid
 from roms_tools.regrid import LateralRegrid, VerticalRegrid
+from roms_tools.utils import save_datasets
 from roms_tools.vertical_coordinate import compute_depth
 from roms_tools.plot import _section_plot, _line_plot
 from roms_tools.utils import (
@@ -21,7 +22,6 @@ from roms_tools.setup.datasets import GLORYSDataset, CESMBGCDataset
 from roms_tools.setup.utils import (
     get_variable_metadata,
     group_dataset,
-    save_datasets,
     get_target_coords,
     rotate_velocities,
     compute_barotropic_velocity,
@@ -43,10 +43,14 @@ class BoundaryForcing:
     ----------
     grid : Grid
         Object representing the grid information.
-    start_time : datetime
-        Start time of the desired boundary forcing data.
-    end_time : datetime
-        End time of the desired boundary forcing data.
+    start_time : datetime, optional
+        The start time of the desired surface forcing data. This time is used to filter the dataset
+        to include only records on or after this time, with a single record at or before this time.
+        If no time filtering is desired, set it to None. Default is None.
+    end_time : datetime, optional
+        The end time of the desired surface forcing data. This time is used to filter the dataset
+        to include only records on or before this time, with a single record at or after this time.
+        If no time filtering is desired, set it to None. Default is None.
     boundaries : Dict[str, bool], optional
         Dictionary specifying which boundaries are forced (south, east, north, west). Default is all True.
     source : Dict[str, Union[str, Path, List[Union[str, Path]]], bool]
@@ -66,10 +70,14 @@ class BoundaryForcing:
           - "physics": for physical atmospheric forcing.
           - "bgc": for biogeochemical forcing.
 
-    apply_2d_horizontal_fill: bool, optional
+    apply_2d_horizontal_fill : bool, optional
         Indicates whether to perform a two-dimensional horizontal fill on the source data prior to regridding to boundaries.
         If `False`, a one-dimensional horizontal fill is performed separately on each of the four regridded boundaries.
         Defaults to `False`.
+    adjust_depth_for_sea_surface_height : bool, optional
+        Whether to account for sea surface height (`zeta`) variations when computing depth coordinates.
+        This adjustment is only applicable for `type="physics"`, as for biogeochemical fields usually `zeta` is not available.
+        Defaults to `False`.
     model_reference_date : datetime, optional
         Reference date for the model. Default is January 1, 2000.
     use_dask: bool, optional
@@ -92,8 +100,8 @@ class BoundaryForcing:
     """
 
     grid: Grid
-    start_time: datetime
-    end_time: datetime
+    start_time: Optional[datetime] = None
+    end_time: Optional[datetime] = None
     boundaries: Dict[str, bool] = field(
         default_factory=lambda: {
             "south": True,
@@ -105,6 +113,7 @@ class BoundaryForcing:
     source: Dict[str, Union[str, Path, List[Union[str, Path]]]]
     type: str = "physics"
     apply_2d_horizontal_fill: bool = False
+    adjust_depth_for_sea_surface_height: bool = False
     model_reference_date: datetime = datetime(2000, 1, 1)
     use_dask: bool = False
     bypass_validation: bool = False
@@ -114,15 +123,21 @@ class BoundaryForcing:
     def __post_init__(self):
 
         self._input_checks()
+        # Dataset for depth coordinates
+        object.__setattr__(self, "ds_depth_coords", xr.Dataset())
+
         target_coords = get_target_coords(self.grid)
 
         data = self._get_data()
 
         if self.apply_2d_horizontal_fill:
+
             data.choose_subdomain(
                 target_coords,
                 buffer_points=20,  # lateral fill needs good buffer from data margin
             )
+            # Enforce double precision to ensure reproducibility
+            data.convert_to_float64()
             data.extrapolate_deepest_to_bottom()
             data.apply_lateral_fill()
 
@@ -150,17 +165,20 @@ class BoundaryForcing:
                 )
 
                 if not self.apply_2d_horizontal_fill:
+                    # Enforce double precision to ensure reproducibility
+                    bdry_data.convert_to_float64()
                     bdry_data.extrapolate_deepest_to_bottom()
 
                 processed_fields = {}
 
-                # lateral regridding of vector fields
-                vector_var_names = [
-                    name
-                    for name, info in self.variable_info.items()
-                    if info["is_vector"]
-                ]
-                if len(vector_var_names) > 0:
+                # vector fields (velocities) are only present in physics datasets
+                if self.type == "physics":
+                    # lateral regridding of vector fields
+                    vector_var_names = [
+                        name
+                        for name, info in self.variable_info.items()
+                        if info["is_vector"]
+                    ]
                     lon = target_coords["lon"].isel(
                         **self.bdry_coords["vector"][direction]
                     )
@@ -176,6 +194,13 @@ class BoundaryForcing:
                                 bdry_data.ds[bdry_data.var_names[var_name]]
                             )
 
+                    if self.adjust_depth_for_sea_surface_height:
+                        # Regrid sea surface height ('zeta') onto a 2-cell-wide margin.
+                        # This is needed to correctly infer depth coordinates at u- and v-points along the boundary.
+                        zeta_vector = lateral_regrid.apply(
+                            bdry_data.ds[bdry_data.var_names["zeta"]]
+                        )
+
                 # lateral regridding of tracer fields
                 tracer_var_names = [
                     name
@@ -209,6 +234,9 @@ class BoundaryForcing:
                         angle,
                         interpolate=True,
                     )
+                    if self.adjust_depth_for_sea_surface_height:
+                        zeta_u = interpolate_from_rho_to_u(zeta_vector)
+                        zeta_v = interpolate_from_rho_to_v(zeta_vector)
 
                 # selection of outermost margin for u/v variables
                 for var_name in self.variable_info.keys():
@@ -218,6 +246,9 @@ class BoundaryForcing:
                             processed_fields[var_name] = processed_fields[
                                 var_name
                             ].isel(**self.bdry_coords[location][direction])
+                if self.adjust_depth_for_sea_surface_height:
+                    zeta_u = zeta_u.isel(**self.bdry_coords["u"][direction])
+                    zeta_v = zeta_v.isel(**self.bdry_coords["v"][direction])
 
                 if not self.apply_2d_horizontal_fill:
                     self._validate_1d_fill(
@@ -225,7 +256,20 @@ class BoundaryForcing:
                         direction,
                         bdry_data.dim_names["depth"],
                     )
-                    processed_fields = apply_1d_horizontal_fill(processed_fields)
+                    for var_name in processed_fields.keys():
+                        processed_fields[var_name] = apply_1d_horizontal_fill(
+                            processed_fields[var_name]
+                        )
+                    if self.adjust_depth_for_sea_surface_height:
+                        zeta_u = apply_1d_horizontal_fill(zeta_u)
+                        zeta_v = apply_1d_horizontal_fill(zeta_v)
+
+                if self.adjust_depth_for_sea_surface_height:
+                    zeta = processed_fields["zeta"]
+                else:
+                    zeta = 0
+                    zeta_u = 0
+                    zeta_v = 0
 
                 var_names_dict = {}
                 for location in ["rho", "u", "v"]:
@@ -234,24 +278,22 @@ class BoundaryForcing:
                         for name, info in self.variable_info.items()
                         if info["location"] == location and info["is_3d"]
                     ]
+
                 # compute layer depth coordinates
+                if len(var_names_dict["rho"]) > 0:
+                    self._get_depth_coordinates(zeta, direction, "rho", "layer")
+                    self._get_depth_coordinates(
+                        zeta, direction, "rho", "interface"
+                    )  # only necessary for plotting
                 if len(var_names_dict["u"]) > 0 or len(var_names_dict["v"]) > 0:
-                    self._get_vertical_coordinates(
-                        type="layer",
-                        direction=direction,
-                        additional_locations=["u", "v"],
-                    )
-                else:
-                    if len(var_names_dict["rho"]) > 0:
-                        self._get_vertical_coordinates(
-                            type="layer", direction=direction, additional_locations=[]
-                        )
+                    self._get_depth_coordinates(zeta_u, direction, "u", "layer")
+                    self._get_depth_coordinates(zeta_v, direction, "v", "layer")
 
                 # vertical regridding
                 for location in ["rho", "u", "v"]:
                     if len(var_names_dict[location]) > 0:
                         vertical_regrid = VerticalRegrid(
-                            self.grid.ds[f"layer_depth_{location}_{direction}"],
+                            self.ds_depth_coords[f"layer_depth_{location}_{direction}"],
                             bdry_data.ds[bdry_data.dim_names["depth"]],
                         )
                         for var_name in var_names_dict[location]:
@@ -262,17 +304,16 @@ class BoundaryForcing:
 
                 # compute barotropic velocities
                 if "u" in self.variable_info and "v" in self.variable_info:
-                    self._get_vertical_coordinates(
-                        type="interface",
-                        direction=direction,
-                        additional_locations=["u", "v"],
-                    )
+                    self._get_depth_coordinates(zeta_u, direction, "u", "interface")
+                    self._get_depth_coordinates(zeta_v, direction, "v", "interface")
                     for location in ["u", "v"]:
                         processed_fields[
                             f"{location}bar"
                         ] = compute_barotropic_velocity(
                             processed_fields[location],
-                            self.grid.ds[f"interface_depth_{location}_{direction}"],
+                            self.ds_depth_coords[
+                                f"interface_depth_{location}_{direction}"
+                            ],
                         )
 
                 # Reorder dimensions
@@ -297,6 +338,18 @@ class BoundaryForcing:
         object.__setattr__(self, "ds", ds)
 
     def _input_checks(self):
+        # Check that start_time and end_time are both None or none of them is
+        if (self.start_time is None) != (self.end_time is None):
+            raise ValueError(
+                "Both `start_time` and `end_time` must be provided together as datetime objects or both should be None."
+            )
+
+        # Trigger a warning if both are None
+        if self.start_time is None and self.end_time is None:
+            logging.warning(
+                "Both `start_time` and `end_time` are None. No time filtering will be applied to the source data."
+            )
+
         # Validate the 'type' parameter
         if self.type not in ["physics", "bgc"]:
             raise ValueError("`type` must be either 'physics' or 'bgc'.")
@@ -314,6 +367,29 @@ class BoundaryForcing:
             {**self.source, "climatology": self.source.get("climatology", False)},
         )
 
+        # Ensure adjust_depth_for_sea_surface_height is only used with type="physics"
+        if self.type == "bgc" and self.adjust_depth_for_sea_surface_height:
+            logging.warning(
+                "adjust_depth_for_sea_surface_height is not applicable for BGC fields. "
+                "Setting it to False."
+            )
+            object.__setattr__(self, "adjust_depth_for_sea_surface_height", False)
+        elif self.adjust_depth_for_sea_surface_height:
+            logging.info("Sea surface height will be used to adjust depth coordinates.")
+        else:
+            logging.info(
+                "Sea surface height will NOT be used to adjust depth coordinates."
+            )
+
+        if self.apply_2d_horizontal_fill:
+            logging.info(
+                "Applying 2D horizontal fill to the source data before regridding."
+            )
+        else:
+            logging.info(
+                "Applying 1D horizontal fill separately to each regridded boundary."
+            )
+
     def _get_data(self):
 
         data_dict = {
@@ -489,118 +565,80 @@ class BoundaryForcing:
 
         object.__setattr__(self, "bdry_coords", bdry_coords)
 
-    def _get_vertical_coordinates(
-        self, type, direction, additional_locations=["u", "v"]
-    ):
-        """Retrieve layer and interface depth coordinates for a specified grid boundary.
+    def _get_depth_coordinates(
+        self,
+        zeta: xr.DataArray | float,
+        direction: str,
+        location: str,
+        depth_type: str = "layer",
+    ) -> None:
+        """Compute and store depth coordinates for a specified boundary direction, grid
+        location, and depth type.
 
-        This method computes and updates the layer and interface depth coordinates along a specified
-        boundary (north, south, east, or west). It handles depth calculations for rho points and
-        additional specified locations (u and v).
+        This method efficiently computes depth coordinates along the specified boundary without
+        interpolating the entire domain topography. The computed depth values are stored in
+        `self.ds_depth_coords`.
 
         Parameters
         ----------
-        type : str
-            The type of depth coordinate to retrieve. Valid options are:
-            - "layer": Retrieves layer depth coordinates.
-            - "interface": Retrieves interface depth coordinates.
-
+        zeta : xr.DataArray or float
+            Free-surface elevation (`zeta`). Can be:
+            - A scalar float value (constant sea surface height).
+            - An `xarray.DataArray` with spatial variations. If provided as an array, it may have a
+              time dimension, but must be **1D** (varying only in time).
         direction : str
-            The direction of the boundary to retrieve coordinates for. Valid options are:
+            The boundary direction for which depth coordinates are computed. Must be one of:
             - "north"
             - "south"
             - "east"
             - "west"
+        location : str
+            Grid location at which depth is computed. Must be one of:
+            - `"rho"`: Depth at scalar grid points.
+            - `"u"`: Depth at U-velocity grid points.
+            - `"v"`: Depth at V-velocity grid points.
+        depth_type : str, optional
+            Type of depth coordinate to compute, either:
+            - `"layer"` (default): Depth at vertical layer midpoints.
+            - `"interface"`: Depth at vertical layer interfaces.
 
-        additional_locations : list of str, optional
-            Specifies additional locations to compute depth coordinates for. Default is ["u", "v"].
-            Valid options include:
-            - "u": Computes depth coordinates for u points.
-            - "v": Computes depth coordinates for v points.
-
-        Updates
-        -------
-        self.grid.ds : xarray.Dataset
-            The dataset is updated with the following vertical depth coordinates:
-            - f"{type}_depth_rho_{direction}": Depth coordinates at rho points.
-            - f"{type}_depth_u_{direction}": Depth coordinates at u points (if applicable).
-            - f"{type}_depth_v_{direction}": Depth coordinates at v points (if applicable).
+        Notes
+        -----
+        - This method is optimized for boundary computations by selecting only the relevant margin
+          (2 grid cells) instead of interpolating the entire domain.
         """
-
-        layer_vars = []
-        for location in ["rho"] + additional_locations:
-            layer_vars.append(f"{type}_depth_{location}_{direction}")
-
-        if all(layer_var in self.grid.ds for layer_var in layer_vars):
-            # Vertical coordinate data already exists
-            pass
-
-        elif f"{type}_depth_rho" in self.grid.ds:
-            depth = self.grid.ds[f"{type}_depth_rho"]
-            depth.attrs["long_name"] = f"{type} depth at rho-points"
-            depth.attrs["units"] = "m"
-            self.grid.ds[f"{type}_depth_rho_{direction}"] = depth.isel(
-                **self.bdry_coords["rho"][direction]
-            )
-
-            if "u" in additional_locations or "v" in additional_locations:
+        key = f"{depth_type}_depth_{location}_{direction}"
+        if key not in self.ds_depth_coords:
+            if location in ["u", "v"]:
                 # selection of margin consisting of 2 grid cells
-                depth = depth.isel(**self.bdry_coords["vector"][direction])
-                # interpolation
-                if "u" in additional_locations:
-                    depth_u = interpolate_from_rho_to_u(depth)
-                    depth_u.attrs["long_name"] = f"{type} depth at u-points"
-                    depth_u.attrs["units"] = "m"
-                    self.grid.ds[f"{type}_depth_u_{direction}"] = depth_u.isel(
-                        **self.bdry_coords["u"][direction]
-                    )
-                if "v" in additional_locations:
-                    depth_v = interpolate_from_rho_to_v(depth)
-                    depth_v.attrs["long_name"] = f"{type} depth at v-points"
-                    depth_v.attrs["units"] = "m"
-                    self.grid.ds[f"{type}_depth_v_{direction}"] = depth_v.isel(
-                        **self.bdry_coords["v"][direction]
-                    )
-        else:
-            if "u" in additional_locations or "v" in additional_locations:
                 h = self.grid.ds["h"].isel(**self.bdry_coords["vector"][direction])
+                if location == "u":
+                    h = interpolate_from_rho_to_u(h)
+                    h = h.isel(**self.bdry_coords["u"][direction])
+                elif location == "v":
+                    h = interpolate_from_rho_to_v(h)
+                    h = h.isel(**self.bdry_coords["v"][direction])
             else:
                 h = self.grid.ds["h"].isel(**self.bdry_coords["rho"][direction])
-            if type == "layer":
+
+            if depth_type == "layer":
                 depth = compute_depth(
-                    0, h, self.grid.hc, self.grid.ds.Cs_r, self.grid.ds.sigma_r
+                    zeta, h, self.grid.hc, self.grid.ds.Cs_r, self.grid.ds.sigma_r
                 )
             else:
                 depth = compute_depth(
-                    0, h, self.grid.hc, self.grid.ds.Cs_w, self.grid.ds.sigma_w
+                    zeta, h, self.grid.hc, self.grid.ds.Cs_w, self.grid.ds.sigma_w
                 )
 
-            if "u" in additional_locations or "v" in additional_locations:
-                depth.attrs["long_name"] = f"{type} depth at rho-points"
-                depth.attrs["units"] = "m"
-                self.grid.ds[f"{type}_depth_rho_{direction}"] = depth.isel(
-                    **self.bdry_coords["rho"][direction]
-                )
-                # selection of margin consisting of 2 grid cells
-                depth = depth.isel(**self.bdry_coords["vector"][direction])
-                # interpolation
-                depth_u = interpolate_from_rho_to_u(depth)
-                depth_v = interpolate_from_rho_to_v(depth)
-                # selection of outermost margin
-                depth_u.attrs["long_name"] = f"{type} depth at u-points"
-                depth_u.attrs["units"] = "m"
-                self.grid.ds[f"{type}_depth_u_{direction}"] = depth_u.isel(
-                    **self.bdry_coords["u"][direction]
-                )
-                depth_v.attrs["long_name"] = f"{type} depth at v-points"
-                depth_v.attrs["units"] = "m"
-                self.grid.ds[f"{type}_depth_v_{direction}"] = depth_v.isel(
-                    **self.bdry_coords["v"][direction]
-                )
-            else:
-                depth.attrs["long_name"] = f"{type} depth at rho-points"
-                depth.attrs["units"] = "m"
-                self.grid.ds[f"{type}_depth_rho_{direction}"] = depth
+            # Add metadata
+            depth.attrs.update(
+                {
+                    "long_name": f"{depth_type} depth at {location}-points along {direction}ern boundary",
+                    "units": "m",
+                }
+            )
+
+            self.ds_depth_coords[key] = depth
 
     def _add_global_metadata(self, data, ds=None):
 
@@ -617,6 +655,10 @@ class BoundaryForcing:
         ds.attrs["end_time"] = str(self.end_time)
         ds.attrs["source"] = self.source["name"]
         ds.attrs["model_reference_date"] = str(self.model_reference_date)
+        ds.attrs["apply_2d_horizontal_fill"] = str(self.apply_2d_horizontal_fill)
+        ds.attrs["adjust_depth_for_sea_surface_height"] = str(
+            self.adjust_depth_for_sea_surface_height
+        )
 
         ds.attrs["theta_s"] = self.grid.ds.attrs["theta_s"]
         ds.attrs["theta_b"] = self.grid.ds.attrs["theta_b"]
@@ -840,9 +882,10 @@ class BoundaryForcing:
         mask = mask.isel(**self.bdry_coords[location][direction])
 
         if "s_rho" in field.dims:
-            field = field.assign_coords(
-                {"layer_depth": self.grid.ds[f"layer_depth_{location}_{direction}"]}
-            )
+            layer_depth = self.ds_depth_coords[f"layer_depth_{location}_{direction}"]
+            if self.adjust_depth_for_sea_surface_height:
+                layer_depth = layer_depth.isel(time=time)
+            field = field.assign_coords({"layer_depth": layer_depth})
         if var_name.startswith(("u", "v", "ubar", "vbar", "zeta")):
             vmax = max(field.max().values, -field.min().values)
             vmin = -vmax
@@ -859,19 +902,11 @@ class BoundaryForcing:
 
         if len(field.dims) == 2:
             if layer_contours:
-                if location in ["u", "v"]:
-                    additional_locations = ["u", "v"]
-                else:
-                    additional_locations = []
-                self._get_vertical_coordinates(
-                    type="interface",
-                    direction=direction,
-                    additional_locations=additional_locations,
-                )
-
-                interface_depth = self.grid.ds[
+                interface_depth = self.ds_depth_coords[
                     f"interface_depth_{location}_{direction}"
                 ]
+                if self.adjust_depth_for_sea_surface_height:
+                    interface_depth = interface_depth.isel(time=time)
                 # restrict number of layer_contours to 10 for the sake of plot clearity
                 nr_layers = len(interface_depth["s_w"])
                 selected_layers = np.linspace(
@@ -883,7 +918,7 @@ class BoundaryForcing:
                 interface_depth = None
 
             _section_plot(
-                field.where(mask),
+                field,
                 interface_depth=interface_depth,
                 title=title,
                 kwargs=kwargs,
@@ -895,37 +930,21 @@ class BoundaryForcing:
     def save(
         self,
         filepath: Union[str, Path],
-        np_eta: int = None,
-        np_xi: int = None,
-        group: bool = False,
+        group: bool = True,
     ) -> None:
         """Save the boundary forcing fields to one or more netCDF4 files.
 
-        This method saves the dataset either as a single file or as multiple files depending on the partitioning and grouping options.
-        The dataset can be saved in two modes:
-
-        1. **Single File Mode (default)**:
-            - If both `np_eta` and `np_xi` are `None`, the entire dataset is saved as a single netCDF4 file.
-            - The file is named based on the `filepath`, with `.nc` automatically appended.
-
-        2. **Partitioned Mode**:
-            - If either `np_eta` or `np_xi` is specified, the dataset is partitioned into spatial tiles along the `eta` and `xi` axes.
-            - Each tile is saved as a separate netCDF4 file, and filenames are modified with an index (e.g., `"filepath_YYYYMM.0.nc"`, `"filepath_YYYYMM.1.nc"`).
-
-        Additionally, if `group` is set to `True`, the dataset is first grouped into temporal subsets, resulting in multiple grouped files before partitioning and saving.
+        This method saves the dataset to disk as either a single netCDF4 file or multiple files, depending on the `group` parameter.
+        If `group` is `True`, the dataset is divided into subsets (e.g., monthly or yearly) based on the temporal frequency
+        of the data, and each subset is saved to a separate file.
 
         Parameters
         ----------
         filepath : Union[str, Path]
-            The base path and filename for the output files. The format of the filenames depends on whether partitioning is used
-            and the temporal range of the data. For partitioned datasets, files will be named with an additional index, e.g.,
-            `"filepath_YYYYMM.0.nc"`, `"filepath_YYYYMM.1.nc"`, etc.
-        np_eta : int, optional
-            The number of partitions along the `eta` direction. If `None`, no spatial partitioning is performed.
-        np_xi : int, optional
-            The number of partitions along the `xi` direction. If `None`, no spatial partitioning is performed.
-        group: bool, optional
-            If `True`, groups the dataset into multiple files based on temporal data frequency. Defaults to `False`.
+            The base path and filename for the output file(s). If `group` is `True`, the filenames will include additional
+            time-based information (e.g., year or month) to distinguish the subsets.
+        group : bool, optional
+            Whether to divide the dataset into multiple files based on temporal frequency. Defaults to `True`.
 
         Returns
         -------
@@ -940,12 +959,6 @@ class BoundaryForcing:
         if filepath.suffix == ".nc":
             filepath = filepath.with_suffix("")
 
-        if self.use_dask:
-            from dask.diagnostics import ProgressBar
-
-            with ProgressBar():
-                self.ds.load()
-
         if group:
             dataset_list, output_filenames = group_dataset(self.ds, str(filepath))
         else:
@@ -953,7 +966,7 @@ class BoundaryForcing:
             output_filenames = [str(filepath)]
 
         saved_filenames = save_datasets(
-            dataset_list, output_filenames, np_eta=np_eta, np_xi=np_xi
+            dataset_list, output_filenames, use_dask=self.use_dask
         )
 
         return saved_filenames
@@ -975,7 +988,6 @@ class BoundaryForcing:
         cls,
         filepath: Union[str, Path],
         use_dask: bool = False,
-        bypass_validation: bool = False,
     ) -> "BoundaryForcing":
         """Create an instance of the BoundaryForcing class from a YAML file.
 
@@ -985,10 +997,6 @@ class BoundaryForcing:
             The path to the YAML file from which the parameters will be read.
         use_dask: bool, optional
             Indicates whether to use dask for processing. If True, data is processed with dask; if False, data is processed eagerly. Defaults to False.
-        bypass_validation: bool, optional
-            Indicates whether to skip validation checks in the processed data. When set to True,
-            the validation process that ensures no NaN values exist at wet points
-            in the processed dataset is bypassed. Defaults to False.
 
         Returns
         -------
@@ -1001,24 +1009,22 @@ class BoundaryForcing:
         params = _from_yaml(cls, filepath)
 
         # Create and return an instance of InitialConditions
-        return cls(
-            grid=grid, **params, use_dask=use_dask, bypass_validation=bypass_validation
-        )
+        return cls(grid=grid, **params, use_dask=use_dask)
 
 
-def apply_1d_horizontal_fill(processed_fields: dict) -> dict:
-    """Forward and backward fill NaN values in horizontal direction for open boundaries.
+def apply_1d_horizontal_fill(data_array: xr.DataArray) -> xr.DataArray:
+    """Forward and backward fill NaN values in a single horizontal dimension for open
+    boundaries.
 
     Parameters
     ----------
-    processed_fields : dict
-        A dictionary of variables to be updated, where each value is an
-        `xarray.DataArray`.
+    data_array : xarray.DataArray
+        The data array to be updated.
 
     Returns
     -------
-    dict of str : xarray.DataArray
-        The updated dictionary of variables, with NaN values filled.
+    xarray.DataArray
+        The updated data array with NaN values filled.
 
     Raises
     ------
@@ -1027,29 +1033,22 @@ def apply_1d_horizontal_fill(processed_fields: dict) -> dict:
     """
 
     horizontal_dims = ["eta_rho", "eta_v", "xi_rho", "xi_u"]
+    selected_horizontal_dim = None
 
-    for var_name in processed_fields.keys():
-        selected_horizontal_dim = None
-        # Determine the horizontal dimension to fill
-        for dim in horizontal_dims:
-            if dim in processed_fields[var_name].dims:
-                if selected_horizontal_dim is not None:
-                    raise ValueError(
-                        f"More than one horizontal dimension found in variable '{var_name}'."
-                    )
-                selected_horizontal_dim = dim
-
-        if selected_horizontal_dim is None:
-            raise ValueError(
-                f"No valid horizontal dimension found for variable '{var_name}'."
-            )
+    # Determine the horizontal dimension to fill
+    for dim in horizontal_dims:
+        if dim in data_array.dims:
+            if selected_horizontal_dim is not None:
+                raise ValueError(
+                    f"More than one horizontal dimension found in variable '{data_array.name}'."
+                )
+            selected_horizontal_dim = dim
 
-        # Forward and backward fill in the horizontal direction
-        filled = one_dim_fill(
-            processed_fields[var_name], selected_horizontal_dim, direction="forward"
-        )
-        processed_fields[var_name] = one_dim_fill(
-            filled, selected_horizontal_dim, direction="backward"
+    if selected_horizontal_dim is None:
+        raise ValueError(
+            f"No valid horizontal dimension found for variable '{data_array.name}'."
         )
 
-    return processed_fields
+    # Forward and backward fill in the horizontal direction
+    filled = one_dim_fill(data_array, selected_horizontal_dim, direction="forward")
+    return one_dim_fill(filled, selected_horizontal_dim, direction="backward")