roms-tools 2.3.0__py3-none-any.whl → 2.5.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (303) hide show
  1. ci/environment.yml +1 -0
  2. roms_tools/__init__.py +2 -1
  3. roms_tools/analysis/roms_output.py +81 -98
  4. roms_tools/plot.py +4 -2
  5. roms_tools/setup/boundary_forcing.py +207 -208
  6. roms_tools/setup/datasets.py +149 -33
  7. roms_tools/setup/grid.py +35 -102
  8. roms_tools/setup/initial_conditions.py +179 -132
  9. roms_tools/setup/nesting.py +239 -86
  10. roms_tools/setup/river_forcing.py +266 -128
  11. roms_tools/setup/surface_forcing.py +137 -76
  12. roms_tools/setup/tides.py +10 -36
  13. roms_tools/setup/topography.py +25 -2
  14. roms_tools/setup/utils.py +52 -82
  15. roms_tools/tests/test_analysis/test_roms_output.py +233 -70
  16. roms_tools/tests/test_setup/test_boundary_forcing.py +283 -57
  17. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/.zattrs +3 -1
  18. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/.zmetadata +3 -1
  19. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_east/0.0.0 +0 -0
  20. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_south/0.0.0 +0 -0
  21. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_ALT_CO2_west/0.0.0 +0 -0
  22. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_east/0.0.0 +0 -0
  23. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_south/0.0.0 +0 -0
  24. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/ALK_west/0.0.0 +0 -0
  25. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_east/0.0.0 +0 -0
  26. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_south/0.0.0 +0 -0
  27. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_ALT_CO2_west/0.0.0 +0 -0
  28. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_east/0.0.0 +0 -0
  29. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_south/0.0.0 +0 -0
  30. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DIC_west/0.0.0 +0 -0
  31. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_east/0.0.0 +0 -0
  32. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_south/0.0.0 +0 -0
  33. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOC_west/0.0.0 +0 -0
  34. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_east/0.0.0 +0 -0
  35. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_south/0.0.0 +0 -0
  36. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOCr_west/0.0.0 +0 -0
  37. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_east/0.0.0 +0 -0
  38. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_south/0.0.0 +0 -0
  39. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DON_west/0.0.0 +0 -0
  40. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_east/0.0.0 +0 -0
  41. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_south/0.0.0 +0 -0
  42. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DONr_west/0.0.0 +0 -0
  43. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_east/0.0.0 +0 -0
  44. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_south/0.0.0 +0 -0
  45. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOP_west/0.0.0 +0 -0
  46. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_east/0.0.0 +0 -0
  47. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_south/0.0.0 +0 -0
  48. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/DOPr_west/0.0.0 +0 -0
  49. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_east/0.0.0 +0 -0
  50. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_south/0.0.0 +0 -0
  51. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Fe_west/0.0.0 +0 -0
  52. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_east/0.0.0 +0 -0
  53. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_south/0.0.0 +0 -0
  54. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/Lig_west/0.0.0 +0 -0
  55. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_east/0.0.0 +0 -0
  56. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_north/0.0.0 +0 -0
  57. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_south/0.0.0 +0 -0
  58. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NH4_west/0.0.0 +0 -0
  59. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_east/0.0.0 +0 -0
  60. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_south/0.0.0 +0 -0
  61. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/NO3_west/0.0.0 +0 -0
  62. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_east/0.0.0 +0 -0
  63. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_south/0.0.0 +0 -0
  64. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/O2_west/0.0.0 +0 -0
  65. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_east/0.0.0 +0 -0
  66. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_south/0.0.0 +0 -0
  67. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/PO4_west/0.0.0 +0 -0
  68. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_east/0.0.0 +0 -0
  69. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_south/0.0.0 +0 -0
  70. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/SiO3_west/0.0.0 +0 -0
  71. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_east/0.0.0 +0 -0
  72. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_north/0.0.0 +0 -0
  73. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_south/0.0.0 +0 -0
  74. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatC_west/0.0.0 +0 -0
  75. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_east/0.0.0 +0 -0
  76. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_north/0.0.0 +0 -0
  77. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_south/0.0.0 +0 -0
  78. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatChl_west/0.0.0 +0 -0
  79. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_east/0.0.0 +0 -0
  80. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_north/0.0.0 +0 -0
  81. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_south/0.0.0 +0 -0
  82. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatFe_west/0.0.0 +0 -0
  83. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_east/0.0.0 +0 -0
  84. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_north/0.0.0 +0 -0
  85. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_south/0.0.0 +0 -0
  86. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatP_west/0.0.0 +0 -0
  87. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_east/0.0.0 +0 -0
  88. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_north/0.0.0 +0 -0
  89. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_south/0.0.0 +0 -0
  90. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diatSi_west/0.0.0 +0 -0
  91. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_east/0.0.0 +0 -0
  92. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_north/0.0.0 +0 -0
  93. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_south/0.0.0 +0 -0
  94. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazC_west/0.0.0 +0 -0
  95. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_east/0.0.0 +0 -0
  96. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_north/0.0.0 +0 -0
  97. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_south/0.0.0 +0 -0
  98. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazChl_west/0.0.0 +0 -0
  99. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_east/0.0.0 +0 -0
  100. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_north/0.0.0 +0 -0
  101. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_south/0.0.0 +0 -0
  102. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazFe_west/0.0.0 +0 -0
  103. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_east/0.0.0 +0 -0
  104. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_north/0.0.0 +0 -0
  105. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_south/0.0.0 +0 -0
  106. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/diazP_west/0.0.0 +0 -0
  107. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_east/0.0.0 +0 -0
  108. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_north/0.0.0 +0 -0
  109. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_south/0.0.0 +0 -0
  110. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spC_west/0.0.0 +0 -0
  111. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_east/0.0.0 +0 -0
  112. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_north/0.0.0 +0 -0
  113. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_south/0.0.0 +0 -0
  114. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spCaCO3_west/0.0.0 +0 -0
  115. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_east/0.0.0 +0 -0
  116. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_north/0.0.0 +0 -0
  117. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_south/0.0.0 +0 -0
  118. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spChl_west/0.0.0 +0 -0
  119. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_east/0.0.0 +0 -0
  120. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_north/0.0.0 +0 -0
  121. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_south/0.0.0 +0 -0
  122. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spFe_west/0.0.0 +0 -0
  123. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_east/0.0.0 +0 -0
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  126. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/spP_west/0.0.0 +0 -0
  127. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_east/0.0.0 +0 -0
  128. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_north/0.0.0 +0 -0
  129. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_south/0.0.0 +0 -0
  130. roms_tools/tests/test_setup/test_data/bgc_boundary_forcing_from_climatology.zarr/zooC_west/0.0.0 +0 -0
  131. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/.zattrs +2 -2
  132. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/.zmetadata +8 -7
  133. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/abs_time/.zattrs +1 -0
  134. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/dust/0.0.0 +0 -0
  135. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/dust_time/.zattrs +1 -1
  136. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/iron/0.0.0 +0 -0
  137. roms_tools/tests/test_setup/test_data/bgc_surface_forcing.zarr/iron_time/.zattrs +1 -1
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  158. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/bry_time/.zarray +2 -2
  159. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/bry_time/.zattrs +1 -1
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  161. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_east/.zarray +4 -4
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  163. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_north/.zarray +4 -4
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  165. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_south/.zarray +4 -4
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  167. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/salt_west/.zarray +4 -4
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  169. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_east/.zarray +4 -4
  170. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_east/0.0.0 +0 -0
  171. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_north/.zarray +4 -4
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  173. roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/temp_south/.zarray +4 -4
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  "title": "ROMS surface forcing file created by ROMS-Tools",
roms_tools/tests/test_setup/test_data/boundary_forcing.zarr/.zattrs CHANGED
@@ -1,10 +1,12 @@
1
1
  {
2
- "end_time": "2021-06-30 00:00:00",
2
+ "adjust_depth_for_sea_surface_height": "False",
3
+ "apply_2d_horizontal_fill": "False",
4
+ "end_time": "2012-12-31 00:00:00",
3
5
  "hc": 250.0,
4
6
  "model_reference_date": "2000-01-01 00:00:00",
5
- "roms_tools_version": "0.1.dev157+dirty",
7
+ "roms_tools_version": "0.1.dev177",
6
8
  "source": "GLORYS",
7
- "start_time": "2021-06-29 00:00:00",
9
+ "start_time": "2012-01-01 00:00:00",
8
10
  "theta_b": 2.0,
9
11
  "theta_s": 5.0,
10
12
  "title": "ROMS boundary forcing file created by ROMS-Tools"