roc-film 1.13.5__py3-none-any.whl → 1.14.0__py3-none-any.whl

roc/film/tests/cdf_compare.py

@@ -0,0 +1,565 @@
+#! /usr/bin/env python
+# -*- coding: utf-8 -*-
+
+"""Maser4py - Compare 2 CDF files module"""
+
+import logging
+import os
+import os.path
+import sys
+from pprint import pformat
+
+import numpy as np
+from spacepy.pycdf import CDF
+
+logger = logging.getLogger(__name__)
+
+
+# Checking file
+def checking_file_exist(cdf_file):
+    if not os.path.isfile(cdf_file):
+        raise FileNotFoundError("%s : does not exist !" % cdf_file)
+    if not os.access(cdf_file, os.R_OK):
+        raise IOError("%s : is not readable !" % cdf_file)
+
+
+#
+def get_keys_and_attributes(cdf_filepath):
+    """
+    Get the list data keys (zVars) and global attributes (gAttrs)
+
+    :param cdf_filepath:
+    :return:
+    """
+    with CDF(cdf_filepath) as cdf_file:
+        return list(cdf_file.keys()), cdf_file.attrs.copy()
+
+
+def list_differences(a, b):
+    """
+    Find list differences
+
+    :param a: first list
+    :param b: second list
+    :return: a tuple containing the differences
+    """
+    return [x for x in a if x not in b], [x for x in b if x not in a]
+
+
+# Listing all items
+def list_elements(liste):
+    n = len(liste)
+    i = 0
+    while i < n:
+        # logger.debug("     %s", liste[i])
+        i += 1
+
+
+# Deleting a dictionnary's key
+def delete_key(dict, key_to_remove):
+    if key_to_remove in dict:
+        del dict[key_to_remove]
+    else:
+        logger.debug("Key to remove '%s' does not exist !", key_to_remove)
+    return dict
+
+
+# Getting a given vAttr's not matched keys
+def get_v_att_keys_diff(field1, field2):
+    """
+    get the differences between v_att keys of field 1 and field 2
+
+    :param field1:
+    :param field2:
+    :return:
+    """
+
+    # convert v_att (class 'spacepy.cdf.zAttrList') of cdf files to sorted
+    # lists
+
+    list_a1 = sorted([attr_key for attr_key in field1.attrs])
+
+    list_a2 = sorted([attr_key for attr_key in field2.attrs])
+    if list_a1 != list_a2:
+        result = list_differences(list_a1, list_a2)
+    else:
+        result = []
+
+    return result
+
+
+# Getting a given vAttr's matched keys
+def get_matched_vAttrKey(field1, field2):
+    set_a1 = set([attr_key for attr_key in field1.attrs])
+
+    set_a2 = set([attr_key for attr_key in field2.attrs])
+
+    return set_a1 & set_a2
+
+
+def compare_global_attributes(global_att1, global_att2, list_ignore_gatt):
+    """
+
+    Compare global attributes
+
+    :return: the global attribute differences
+    """
+
+    # initialize the Global Attributes dictionary
+    gAttrs = {}
+
+    list_global_att1 = sorted(list(global_att1.keys()))
+    list_global_att2 = sorted(list(global_att2.keys()))
+
+    if list_ignore_gatt != []:
+        list_global_att1 = [n for n in list_global_att1 if n not in list_ignore_gatt]
+        list_global_att2 = [n for n in list_global_att2 if n not in list_ignore_gatt]
+    not_match_attribute = list_differences(list_global_att1, list_global_att2)
+
+    l1 = len(not_match_attribute[0])
+    l2 = len(not_match_attribute[1])
+
+    if list_ignore_gatt != []:
+        logger.debug(
+            "%s Global Attributes to be ignored for comparison : %s",
+            len(list_ignore_gatt),
+            list_ignore_gatt,
+        )
+    if l1 != 0 or l2 != 0:
+        logger.debug("Global attributes: different")
+        logger.debug("File 1 : %s%s", str(len(global_att1)), " global attributes")
+        logger.debug("File1's Global Attributes List : %s", list_global_att1)
+        logger.debug("File 2 : %s%s", str(len(global_att2)), " global attributes")
+        logger.debug("File2's Global Attributes List : %s", list_global_att2)
+        logger.debug("Not matched global attributes")
+        logger.debug(
+            "   File1 : %s - %s", len(not_match_attribute[0]), not_match_attribute[0]
+        )
+        logger.debug(
+            "   File2 : %s - %s", len(not_match_attribute[1]), not_match_attribute[1]
+        )
+
+        gAttrs["NotMatched"] = not_match_attribute
+        # Remove not matched keys from the 2 dictionaries
+        not_match1 = not_match_attribute[0]
+        not_match2 = not_match_attribute[1]
+
+        for key_to_remove in not_match1:
+            global_att1 = delete_key(global_att1, key_to_remove)
+
+        for key_to_remove in not_match2:
+            global_att2 = delete_key(global_att2, key_to_remove)
+
+    # Compare Global Attributes's value
+    nl1 = len(global_att1)
+    nl2 = len(global_att2)
+    if nl1 == nl2:  # The 2 dictionaries have the same keys
+        # Compare 2 dictionaries
+        checking = global_att1 == global_att2
+        if not checking:
+            # Not equal !!
+            logger.debug("Global attributes value: different")
+            common_att = sorted(list(global_att1.keys()))
+
+            DiffValueAttr = {}
+            for com_att in common_att:
+                if com_att not in list_ignore_gatt:
+                    dd1 = global_att1.get(com_att)
+                    dd2 = global_att2.get(com_att)
+                    if dd1 != dd2:
+                        val1 = dd1[0]
+                        val2 = dd2[0]
+                        logger.debug("** %s", com_att)
+                        logger.debug("   File1 : %s", val1)
+                        logger.debug("   File2 : %s", val2)
+
+                        DiffValueAttr[com_att] = [val1, val2]
+            if DiffValueAttr:
+                gAttrs["Value"] = DiffValueAttr
+            logger.debug("gAttrs:  %s", pformat(DiffValueAttr, width=1000))
+
+    return gAttrs
+
+
+def precision_dict_from_list(precision_list):
+    precision_dict = {}
+    for key_value in precision_list:
+        key, value = key_value.split(":")
+        precision_dict[key] = float(value)
+    return precision_dict
+
+
+def compare_z_var(
+    field1,
+    field2,
+    key,
+    dict_numerical_precision={},
+    shape_diff_dict={},
+    value_diff_dict={},
+):
+    # check if fields have the same shape
+    if field1.shape:
+        data1 = field1[...]
+    else:
+        # Make sure to have numpy ndarray if data1 is a scalar
+        data1 = np.atleast_1d(field1[...])
+    if field2.shape:
+        data2 = field2[...]
+    else:
+        # Make sure to have numpy ndarray if data2 is a scalar
+        data2 = np.atleast_1d(field2[...])
+
+    res = False
+
+    if data1.shape != data2.shape:
+        logger.debug(
+            "%s - array shape is different: %s | %s", key, field1.shape, field2.shape
+        )
+        shape_diff_dict[key] = [data1.shape, data2.shape]
+
+    else:
+        differences_mask = data1 != data2
+        fields_are_different = np.any(differences_mask)
+
+        # zVariable's key : check for different values
+        if fields_are_different:
+            if key in dict_numerical_precision.keys():
+                tab_diff = np.isclose(data1, data2, atol=dict_numerical_precision[key])
+                res = np.all(tab_diff)
+                if not res:
+                    logger.debug(
+                        "Different values for zVariable '%s' : %s | %s",
+                        key,
+                        field1,
+                        field2,
+                    )
+                    value_diff_dict[key] = [
+                        data1[differences_mask],
+                        data2[differences_mask],
+                    ]
+
+            else:
+                logger.debug(
+                    "Different values for zVariable '%s' : %s | %s", key, field1, field2
+                )
+                value_diff_dict[key] = [
+                    data1[differences_mask],
+                    data2[differences_mask],
+                ]
+
+    return shape_diff_dict, value_diff_dict
+
+
+def compare_v_att(
+    field1, field2, key, key_diff_dict={}, value_diff_dict={}, list_ignore_vatt=[]
+):
+    v_att_keys_diff = list_differences(field1.attrs, field2.attrs)
+
+    if list_ignore_vatt != []:
+        logger.debug(
+            "%s Variable Attributes to be ignored for comparison : %s",
+            len(list_ignore_vatt),
+            list_ignore_vatt,
+        )
+        for item1 in list_ignore_vatt:
+            if item1 in v_att_keys_diff[0]:
+                (v_att_keys_diff[0]).remove(item1)
+        for item2 in list_ignore_vatt:
+            if item2 in v_att_keys_diff[1]:
+                (v_att_keys_diff[1]).remove(item2)
+
+    if len(v_att_keys_diff[0]) != 0 or len(v_att_keys_diff[1]) != 0:
+        logger.debug(
+            "Different Variable Attribute's keys of the zVariable '%s' : %s",
+            key,
+            v_att_keys_diff,
+        )
+        key_diff_dict[key] = v_att_keys_diff
+
+    common_v_att_keys = get_matched_vAttrKey(field1, field2)
+    logger.debug("Identical Variable Attribute's key : %s", common_v_att_keys)
+
+    vAttrsList1 = field1.attrs
+    vAttrsList2 = field2.attrs
+
+    DiffValue_vAttr = {}
+
+    for check_item in common_v_att_keys:
+        logger.debug(
+            "%s : %s  |  %s",
+            check_item,
+            vAttrsList1[check_item],
+            vAttrsList2[check_item],
+        )
+
+        if vAttrsList1[check_item] == vAttrsList2[check_item]:
+            logger.debug("%s : equal", check_item)
+        else:
+            logger.debug("%s : not equal", check_item)
+            DiffValue_vAttr[check_item] = [
+                vAttrsList1[check_item],
+                vAttrsList2[check_item],
+            ]
+            value_diff_dict[key] = DiffValue_vAttr
+            logger.debug("vAttrs['Value'] : %s", value_diff_dict)
+
+    return key_diff_dict, value_diff_dict
+
+
+def compare_data(
+    cdf1,
+    cdf2,
+    cdf_keys1,
+    cdf_keys2,
+    list_ignore_zvar=[],
+    list_ignore_vatt=[],
+    list_numerical_precision=[],
+):
+    zVars = {}  # store data differences
+    vAttrs = {}  # store attribute differences
+
+    # Ignored zVariables for comparison
+    if list_ignore_zvar != []:
+        logger.debug(
+            "%s zVariables to be ignored for comparison : %s",
+            len(list_ignore_zvar),
+            list_ignore_zvar,
+        )
+
+    if len(cdf_keys1) != len(cdf_keys2):
+        logger.debug("Zvariables: different")
+
+    # ***** Not matched keys *****
+    list_diff1, list_diff2 = list_differences(cdf_keys1, cdf_keys2)
+
+    if cdf_keys1 == cdf_keys2:
+        logger.debug("Zvariables keys: identical")
+        same_keys = cdf_keys1
+        ordered_common_keys = sorted(list(same_keys))
+    else:
+        if (list_diff1 != []) or (list_diff2 != []):
+            zVars["Keys"] = [list_diff1, list_diff2]
+
+            logger.debug("NOT MATCHED zVARIABLES :")
+            for idx, diff_list in enumerate(zVars["Keys"]):
+                logger.debug("   File %d : %d - %s", idx + 1, len(diff_list), diff_list)
+        # ***** Matched keys *****
+        same_keys = set(cdf_keys1) & set(cdf_keys2)
+
+        # ***** Alphabetical order *****
+        ordered_common_keys = sorted(list(same_keys))
+
+    logger.debug("MATCHED zVARIABLES : %d", len(ordered_common_keys))
+    logger.debug("    %s", ordered_common_keys)
+
+    # prepare the dicts to store z_var and v_att diff
+    v_att_key_diff_dict = {}
+    v_att_value_diff_dict = {}
+    z_var_shape_diff_dict = {}
+    z_var_value_diff_dict = {}
+
+    for key in ordered_common_keys:
+        if key in list_ignore_zvar:
+            continue
+
+        # Raw values comparison : It's really necessary for time values like "Epoch"
+        #   cdf1.raw_var(key) => 549441617029459008
+        #   cdf1[key] => 2017-05-30 18:39:07.845459
+        field1 = cdf1.raw_var(key)
+        field2 = cdf2.raw_var(key)
+
+        dict_numerical_precision = {}
+        if len(list_numerical_precision) != 0:
+            dict_numerical_precision = precision_dict_from_list(
+                list_numerical_precision
+            )
+
+        compare_z_var(
+            field1,
+            field2,
+            key,
+            dict_numerical_precision=dict_numerical_precision,
+            shape_diff_dict=z_var_shape_diff_dict,
+            value_diff_dict=z_var_value_diff_dict,
+        )
+
+        compare_v_att(
+            field1,
+            field2,
+            key,
+            list_ignore_vatt=list_ignore_vatt,
+            key_diff_dict=v_att_key_diff_dict,
+            value_diff_dict=v_att_value_diff_dict,
+        )
+
+    if v_att_value_diff_dict:
+        vAttrs["Value"] = v_att_value_diff_dict
+        logger.debug("vAttrs['Value'] : %s", vAttrs["Value"])
+
+    if z_var_shape_diff_dict:
+        zVars["Shape"] = z_var_shape_diff_dict
+    if z_var_value_diff_dict:
+        zVars["Value"] = z_var_value_diff_dict
+
+    if v_att_key_diff_dict:
+        vAttrs["Keys"] = v_att_key_diff_dict
+    if v_att_value_diff_dict:
+        vAttrs["Value"] = v_att_value_diff_dict
+
+    return zVars, vAttrs
+
+
+# Comparing 2 CDF files data
+def cdf_compare(
+    cdf_file1,
+    cdf_file2,
+    list_ignore_gatt=[],
+    list_ignore_zvar=[],
+    list_ignore_vatt=[],
+    list_numerical_precision=[],
+):
+    logger.debug(" CDF file 1 : %s", cdf_file1)
+    logger.debug(" CDF file 2 : %s", cdf_file2)
+    checking_file_exist(cdf_file1)
+    checking_file_exist(cdf_file2)
+
+    cdf_keys1, global_att1 = get_keys_and_attributes(cdf_file1)
+    cdf_keys2, global_att2 = get_keys_and_attributes(cdf_file2)
+
+    cdf1 = CDF(cdf_file1)
+    cdf2 = CDF(cdf_file2)
+
+    dict_result = {}
+
+    gAttrs = compare_global_attributes(global_att1, global_att2, list_ignore_gatt)
+
+    if gAttrs:
+        dict_result["gAttrs"] = gAttrs
+
+    zVars, vAttrs = compare_data(
+        cdf1,
+        cdf2,
+        cdf_keys1,
+        cdf_keys2,
+        list_ignore_zvar=list_ignore_zvar,
+        list_ignore_vatt=list_ignore_vatt,
+        list_numerical_precision=list_numerical_precision,
+    )
+
+    if zVars:
+        dict_result["zVars"] = zVars
+
+    if vAttrs:
+        dict_result["vAttrs"] = vAttrs
+
+    cdf1.close()
+    cdf2.close()
+
+    for key, value in dict_result.items():
+        logger.debug("*°*°* %s *°*°*", key)
+        for key1, value1 in dict_result[key].items():
+            logger.debug("     *°* %s : %s", key1, value1)
+
+    # Case of we need to force to ignore some zVariables
+    # if forced_ignored_zvar != []:
+    #     logger.debug("Forced ignored zVariables (Particular case) : %s", forced_ignored_zvar)
+
+    logger.debug("Return value: %s", pformat(dict_result, width=1000))
+    return dict_result
+
+
+def main(cdf_file1, cdf_file2):
+    if len(sys.argv) >= 3:
+        list_argv = sys.argv
+        list_ignore_gatt = []
+        list_ignore_zvar = []
+        list_ignore_vatt = []
+        list_numerical_precision = []
+
+        if "--ignore_gatt" in (list_argv):
+            ind_ignore_gatt = (list_argv).index("--ignore_gatt")
+            list_ignore_gatt = []
+            for item in list_argv[ind_ignore_gatt + 1 :]:
+                if not item.startswith("--ignore_") and not item.startswith(
+                    "--precision"
+                ):
+                    list_ignore_gatt.append(item)
+                else:
+                    break
+            logger.warning("Ignored global attributes list : %s", list_ignore_gatt)
+        else:
+            logger.debug("No global attributes to be ignored")
+
+        if "--ignore_zvar" in (list_argv):
+            ind_ignore_zvar = (list_argv).index("--ignore_zvar")
+            list_ignore_zvar = []
+            for item in list_argv[ind_ignore_zvar + 1 :]:
+                if not item.startswith("--ignore_") and not item.startswith(
+                    "--precision"
+                ):
+                    list_ignore_zvar.append(item)
+                else:
+                    break
+            logger.warning("Ignored zVariables list : %s", list_ignore_zvar)
+        else:
+            logger.debug("No zVariables to be ignored")
+
+        if "--ignore_vatt" in (list_argv):
+            ind_ignore_vatt = (list_argv).index("--ignore_vatt")
+            list_ignore_vatt = []
+            for item in list_argv[ind_ignore_vatt + 1 :]:
+                if not item.startswith("--ignore_") and not item.startswith(
+                    "--precision"
+                ):
+                    list_ignore_vatt.append(item)
+                else:
+                    break
+            logger.warning("Ignored variable attributes list : %s", list_ignore_vatt)
+        else:
+            logger.debug("No variable attributes to be ignored")
+
+        if "--precision" in (list_argv):
+            ind_precision_zvar = (list_argv).index("--precision")
+            list_numerical_precision = []
+            for item in list_argv[ind_precision_zvar + 1 :]:
+                if not item.startswith("--ignore_") and not item.startswith(
+                    "--precision"
+                ):
+                    list_numerical_precision.append(item)
+                else:
+                    break
+            logger.warning("Numerical precision list : %s", list_numerical_precision)
+        else:
+            logger.debug("No zVariable precision set")
+
+        if "--precision" in (list_argv):
+            ind_precision_zvar = (list_argv).index("--precision")
+            list_numerical_precision = []
+            for item in list_argv[ind_precision_zvar + 1 :]:
+                if not item.startswith("--ignore_") and not item.startswith(
+                    "--precision"
+                ):
+                    list_numerical_precision.append(item)
+                else:
+                    break
+            logger.warning("Numerical precision list : %s", list_numerical_precision)
+        else:
+            logger.debug("No zVariable precision set")
+
+        result = cdf_compare(
+            cdf_file1,
+            cdf_file2,
+            list_ignore_gatt=list_ignore_gatt,
+            list_ignore_zvar=list_ignore_zvar,
+            list_ignore_vatt=list_ignore_vatt,
+            list_numerical_precision=list_numerical_precision,
+        )
+        logger.info("Final result : %s", pformat(result, width=1000))
+
+
+# *°*°*°*°*°*°*°*°
+#  Main program
+# *°*°*°*°*°*°*°*°
+
+if __name__ == "__main__":
+    main(sys.argv[1], sys.argv[2])