roc-film 1.13.5__py3-none-any.whl → 1.14.0__py3-none-any.whl

roc/film/tasks/l0_to_hk.py

@@ -12,36 +12,41 @@ import uuid
 import numpy as np
 import h5py
 
-
 from poppy.core.logger import logger
 from poppy.core.task import Task
 from poppy.core.target import FileTarget
 
 from roc.rpl.time import Time
 
-from roc.film.tools.file_helpers import put_cdf_global, \
-    get_master_cdf_dir, get_output_dir, is_output_dir
+from roc.film.tools.file_helpers import (
+    put_cdf_global,
+    get_master_cdf_dir,
+    get_output_dir,
+    is_output_dir,
+)
 from roc.film.tools.metadata import init_cdf_global, get_spice_kernels
 from roc.film.tools.file_helpers import generate_filepath, is_packet, get_l0_file
+from roc.film.constants import INPUT_DATETIME_STRFTIME
 
-__all__ = ['L0ToHk']
-
-# Generate SOLO RPW HK daily CDF files
 from roc.film.exceptions import LoadDataSetError
-
 from roc.film.tools.tools import get_datasets, sort_cdf_by_epoch
 
+__all__ = ["L0ToHk"]
+
+
+# Generate SOLO RPW HK daily CDF files
+
 
-@FileTarget.input(identifier='l0_file', filepath=get_l0_file)
-@FileTarget.output(identifier='hk_dbs')
-@FileTarget.output(identifier='hk_das')
-@FileTarget.output(identifier='hk_das_stat')
-@FileTarget.output(identifier='hk_tds')
-@FileTarget.output(identifier='hk_lfr')
-@FileTarget.output(identifier='hk_thr')
-@FileTarget.output(identifier='hk_pdu')
-@FileTarget.output(identifier='hk_bia')
-@Task.as_task(plugin_name='roc.film', name='l0_to_hk')
+@FileTarget.input(identifier="l0_file", filepath=get_l0_file)
+@FileTarget.output(identifier="hk_dbs")
+@FileTarget.output(identifier="hk_das")
+@FileTarget.output(identifier="hk_das_stat")
+@FileTarget.output(identifier="hk_tds")
+@FileTarget.output(identifier="hk_lfr")
+@FileTarget.output(identifier="hk_thr")
+@FileTarget.output(identifier="hk_pdu")
+@FileTarget.output(identifier="hk_bia")
+@Task.as_task(plugin_name="roc.film", name="l0_to_hk")
 def L0ToHk(task):
     """
     Task to write RPW HK "digest" survey data CDF files from an input L0 file.
@@ -52,122 +57,127 @@ def L0ToHk(task):
 
     # Define task job ID (long and short)
     job_uuid = str(uuid.uuid4())
-    job_id = f'L0ToHk-{job_uuid[:8]}'
-    logger.info(f'Task {job_id} is starting')
+    job_id = f"L0ToHk-{job_uuid[:8]}"
+    logger.info(f"Task {job_id} is starting")
 
     try:
         # Get products directory (folder where final output files will be moved)
-        products_dir = task.pipeline.get('products_dir',
-                                         default=[None], args=True)[0]
+        products_dir = task.pipeline.get("products_dir", default=[None], args=True)[0]
 
         # Get output dir
         output_dir = get_output_dir(task.pipeline)
-        if not is_output_dir(output_dir,
-                             products_dir=products_dir):
-            logger.info(f'Making {output_dir}')
+        if not is_output_dir(output_dir, products_dir=products_dir):
+            logger.info(f"Making {output_dir}")
             os.makedirs(output_dir)
         else:
-            logger.debug(f'Output files will be '
-                        f'saved into folder {output_dir}')
-
+            logger.debug(f"Output files will be saved into folder {output_dir}")
 
         # Get or create failed_files list from pipeline properties
-        failed_files = task.pipeline.get('failed_files', default=[], create=True)
+        failed_files = task.pipeline.get("failed_files", default=[], create=True)
 
         # Get or create processed_files list from pipeline properties
-        processed_files = task.pipeline.get(
-            'processed_files', default=[], create=True)
+        processed_files = task.pipeline.get("processed_files", default=[], create=True)
 
         # Get overwrite argument
-        overwrite = task.pipeline.get('overwrite', default=False, args=True)
+        overwrite = task.pipeline.get("overwrite", default=False, args=True)
 
         # get the input l0_file
-        l0_file = task.inputs['l0_file']
+        l0_file = task.inputs["l0_file"]
 
         # Get (optional) arguments for SPICE
-        predictive = task.pipeline.get('predictive', default=False, args=True)
-        kernel_date = task.pipeline.get('kernel_date', default=None, args=True)
-        no_spice = task.pipeline.get('no_spice', default=False, args=True)
+        predictive = task.pipeline.get("predictive", default=False, args=True)
+        kernel_date = task.pipeline.get("kernel_date", default=None, args=True)
+        no_spice = task.pipeline.get("no_spice", default=False, args=True)
 
         # Get/create Time singleton
-        time_instance = Time(predictive=predictive,
-                             kernel_date=kernel_date,
-                             no_spice=no_spice)
-    except:
-        logger.exception(
-                f'Initializing inputs has failed for {job_id}!')
+        time_instance = Time(
+            predictive=predictive, kernel_date=kernel_date, no_spice=no_spice
+        )
+    except Exception:
+        logger.exception(f"Initializing inputs has failed for {job_id}!")
         try:
-            os.makedirs(os.path.join(output_dir, 'failed'))
-        except:
-            logger.error(f'output_dir argument is not defined for {job_id}!')
+            os.makedirs(os.path.join(output_dir, "failed"))
+        except Exception:
+            logger.error(f"output_dir argument is not defined for {job_id}!")
         task.pipeline.exit()
         return
 
     # Retrieve list of output datasets to produce for the given task
     try:
         dataset_list = get_datasets(task, task.name)
-    except:
-        raise LoadDataSetError(f'Cannot load the list of datasets to produce for {task.name}    [{job_id}]')
+    except Exception:
+        raise LoadDataSetError(
+            f"Cannot load the list of datasets to produce for {task.name}    [{job_id}]"
+        )
     else:
-        logger.debug(f'Produce HK CDF file(s) for the following dataset(s): {[ds["name"] for ds in dataset_list]}    [{job_id}]')
+        logger.debug(
+            f"Produce HK CDF file(s) for the following dataset(s): {[ds['name'] for ds in dataset_list]}    [{job_id}]"
+        )
 
     # open the HDF5 file to extract information
-    with h5py.File(l0_file.filepath, 'r') as l0:
-
+    with h5py.File(l0_file.filepath, "r") as l0:
         # Loops over each output dataset to produce for the current task
         for current_dataset in dataset_list:
-            dataset_name = current_dataset['name']
-            data_descr = current_dataset['descr']
-            data_version = current_dataset['version']
+            dataset_name = current_dataset["name"]
+            data_descr = current_dataset["descr"]
+            # data_version = current_dataset['version']
 
             filepath = None
             try:
                 # Display
-                logger.info('Processing HK dataset {0}    [{1}]'.format(dataset_name, job_id))
+                logger.info(
+                    "Processing HK dataset {0}    [{1}]".format(dataset_name, job_id)
+                )
 
                 # get the path to the master CDF file of this dataset
                 master_cdf_dir = get_master_cdf_dir(task)
                 # Get master cdf filename from descriptor
-                master_cdf_file = data_descr['template']
+                master_cdf_file = data_descr["template"]
                 # Build master file pattern
-                master_pattern = osp.join(master_cdf_dir,
-                                       master_cdf_file)
+                master_pattern = osp.join(master_cdf_dir, master_cdf_file)
                 # Get master filepath
                 master_path = glob.glob(master_pattern)
 
                 # Check existence
                 if not master_path:
-                    os.makedirs(os.path.join(output_dir, 'failed'))
-                    raise FileNotFoundError('{0} MASTER CDF '
-                                            'FILE NOT FOUND!    [{1}]'.format(master_pattern, job_id))
+                    os.makedirs(os.path.join(output_dir, "failed"))
+                    raise FileNotFoundError(
+                        "{0} MASTER CDF FILE NOT FOUND!    [{1}]".format(
+                            master_pattern, job_id
+                        )
+                    )
                 else:
                     master_path = sorted(master_path)[-1]
-                    logger.debug('Use {0} as a master CDF    [{1}]'.format(master_path, job_id))
+                    logger.debug(
+                        "Use {0} as a master CDF    [{1}]".format(master_path, job_id)
+                    )
 
                 # Set CDF metadata
                 metadata = init_cdf_global(l0.attrs, task, master_path)
 
                 # Build output filepath from pipeline properties and L0 metadata
                 # Generate output filepath
-                filepath = generate_filepath(task, metadata, '.cdf',
-                                             overwrite=overwrite)
+                filepath = generate_filepath(
+                    task, metadata, ".cdf", overwrite=overwrite
+                )
 
                 # Get TM packet(s) required to generate HK CDF for the current
                 # dataset
-                packet = data_descr['packet']
+                packet = data_descr["packet"]
                 # Check that TM packet(s) are in the input l0 data
-                if is_packet(packet, l0['TM']):
-                    data = l0['TM'][packet[0]]
+                if is_packet(packet, l0["TM"]):
+                    data = l0["TM"][packet[0]]
                 else:
                     # if not continue
-                    logger.info(f'No packet found in {l0_file.filepath} '
-                                f'for dataset {dataset_name}    [{job_id}]')
+                    logger.info(
+                        f"No packet found in {l0_file.filepath} "
+                        f"for dataset {dataset_name}    [{job_id}]"
+                    )
                     continue
 
                 # open the target to update its status according to errors etc
                 target = task.outputs[dataset_name]
                 with target.activate():
-
                     # if output dir not exists, create it
                     if not os.path.isdir(task.pipeline.output):
                         os.makedirs(task.pipeline.output)
@@ -179,76 +189,80 @@ def L0ToHk(task):
                     put_cdf_global(cdf, metadata)
 
                     # get the time from the header
-                    time = data['data_field_header']['time']
+                    time = data["data_field_header"]["time"]
                     # convert time to CDF_TIME_TT2000
-                    tt2000 = time_instance.obt_to_utc(time,
-                                                      to_tt2000=True)
+                    tt2000 = time_instance.obt_to_utc(time, to_tt2000=True)
                     # set time zVars into the CDF
-                    cdf['ACQUISITION_TIME'] = time[:, :2]
-                    cdf['Epoch'] = tt2000
-                    cdf['SCET'] = Time.cuc_to_scet(time[:, :2])
-                    cdf['SYNCHRO_FLAG'] = time[:, 2]
+                    cdf["ACQUISITION_TIME"] = time[:, :2]
+                    cdf["Epoch"] = tt2000
+                    cdf["SCET"] = Time.cuc_to_scet(time[:, :2])
+                    cdf["SYNCHRO_FLAG"] = time[:, 2]
 
                     # copy data from file into memory
                     # TODO - Add conversion of HK parameters into engineering
                     # values
                     parameters = {}
-                    for parameter, values in data['source_data'].items():
+                    for parameter, values in data["source_data"].items():
                         parameters[parameter] = values[...]
                     # loop over parameters and add them to the CDF file
                     for parameter, values in parameters.items():
                         cdf[parameter] = values
-                        cdf[parameter].attrs['SCALEMIN'] = np.min(values)
-                        cdf[parameter].attrs['SCALEMAX'] = np.max(values)
+                        cdf[parameter].attrs["SCALEMIN"] = np.min(values)
+                        cdf[parameter].attrs["SCALEMAX"] = np.max(values)
 
                     # TODO - Improve this part (add a check of requested attributes?)
                     # Generation date
-                    cdf.attrs['Generation_date'] = datetime.utcnow().isoformat()
+                    cdf.attrs["Generation_date"] = datetime.utcnow().strftime(
+                        INPUT_DATETIME_STRFTIME
+                    )
 
                     # file uuid
-                    cdf.attrs['File_ID'] = str(uuid.uuid4())
+                    cdf.attrs["File_ID"] = str(uuid.uuid4())
 
-                    cdf.attrs['TIME_MIN'] = str(
-                        Time.tt2000_to_jd(min(tt2000)))
-                    cdf.attrs['TIME_MAX'] = str(
-                        Time.tt2000_to_jd(max(tt2000)))
+                    cdf.attrs["TIME_MIN"] = (
+                        str(time_instance.tt2000_to_utc(min(tt2000))) + "Z"
+                    ).replace(" ", "T")
+                    cdf.attrs["TIME_MAX"] = (
+                        str(time_instance.tt2000_to_utc(max(tt2000))) + "Z"
+                    ).replace(" ", "T")
 
                     # Add SPICE SCLK kernel as an entry
                     # of the "Kernels" g. attr
-                    sclk_file = get_spice_kernels(time_instance=time_instance,
-                                                  pattern='solo_ANC_soc-sclk')
+                    sclk_file = get_spice_kernels(
+                        time_instance=time_instance, pattern="solo_ANC_soc-sclk"
+                    )
 
                     if sclk_file:
-                        cdf.attrs['SPICE_KERNELS'] = sclk_file[-1]
+                        cdf.attrs["SPICE_KERNELS"] = sclk_file[-1]
                     else:
-                        logger.warning('No SPICE SCLK kernel '
-                                       f'saved for {filepath}    [{job_id}]')
+                        logger.warning(
+                            f"No SPICE SCLK kernel saved for {filepath}    [{job_id}]"
+                        )
 
                     cdf.close()
 
                     if os.path.isfile(filepath):
                         # Sort by ascending Epoch time
-                        logger.debug(f'Sorting by ascending Epoch times    [{job_id}]')
+                        logger.debug(f"Sorting by ascending Epoch times    [{job_id}]")
                         # Build list of Zvar to sort
                         zvar_list = list(parameters.keys())
-                        zvar_list.extend(['Epoch',
-                                          'ACQUISITION_TIME',
-                                          'SCET',
-                                          'SYNCHRO_FLAG'])
+                        zvar_list.extend(
+                            ["Epoch", "ACQUISITION_TIME", "SCET", "SYNCHRO_FLAG"]
+                        )
                         cdf = CDF(filepath)
                         cdf.readonly(False)
                         cdf = sort_cdf_by_epoch(cdf, zvar_list=zvar_list)
                         cdf.close()
 
-                        logger.info(
-                            f'{filepath} saved    [{job_id}]'
-                        )
+                        logger.info(f"{filepath} saved    [{job_id}]")
                     else:
-                        raise FileNotFoundError(f'{filepath} not found!    [{job_id}]')
+                        raise FileNotFoundError(f"{filepath} not found!    [{job_id}]")
 
-            except:
-                logger.exception(f'Production for dataset {dataset_name} '
-                                 f'from {l0_file.filepath} has failed!    [{job_id}]')
+            except Exception:
+                logger.exception(
+                    f"Production for dataset {dataset_name} "
+                    f"from {l0_file.filepath} has failed!    [{job_id}]"
+                )
                 if filepath:
                     failed_files.append(filepath)
             else:
@@ -260,6 +274,6 @@ def L0ToHk(task):
 
 
 # TODO - Add task to generate SOLO RPW HK dump CDF files
-#L0ToHkDumpTask = Plugin.manager[PLUGIN].task("l0_to_hk_dump")
-#@L0ToHkDumpTask.as_task
+# L0ToHkDumpTask = Plugin.manager[PLUGIN].task("l0_to_hk_dump")
+# @L0ToHkDumpTask.as_task
 # def l0_to_hk_dump(task):

roc/film/tasks/l0_to_l1_bia_current.py

@@ -10,13 +10,19 @@ from poppy.core.target import FileTarget
 from poppy.core.task import Task
 from roc.rpl import Time
 
-from roc.film.tools.file_helpers import get_l0_files, get_output_dir, is_output_dir, l0_to_trange_cdf
+from roc.film.tools.file_helpers import (
+    get_l0_files,
+    get_output_dir,
+    is_output_dir,
+    l0_to_trange_cdf,
+)
 
-__all__ = ['L0ToL1BiaCurrent']
+__all__ = ["L0ToL1BiaCurrent"]
 
-@FileTarget.input(identifier='l0_file', many=True, filepath=get_l0_files)
-@FileTarget.output(identifier='l1_bia_current')
-@Task.as_task(plugin_name='roc.film', name='l0_to_l1_bia_current')
+
+@FileTarget.input(identifier="l0_file", many=True, filepath=get_l0_files)
+@FileTarget.output(identifier="l1_bia_current")
+@Task.as_task(plugin_name="roc.film", name="l0_to_l1_bia_current")
 def L0ToL1BiaCurrent(task):
     """
     Task to generate l1 bias current CDF from l0 file(s)
@@ -26,47 +32,49 @@ def L0ToL1BiaCurrent(task):
     """
 
     # Get list of input l0 file(s)
-    l0_file_list = task.inputs['l0_file'].filepath
+    l0_file_list = task.inputs["l0_file"].filepath
 
     # Get --monthly keyword
-    monthly = task.pipeline.get('monthly', default=False, args=True)
+    monthly = task.pipeline.get("monthly", default=False, args=True)
 
     # Get overwrite argument
-    overwrite = task.pipeline.get('overwrite', default=False, args=True)
+    overwrite = task.pipeline.get("overwrite", default=False, args=True)
 
     # Get cdag keyword
-    is_cdag = task.pipeline.get('cdag', default=False, args=True)
+    is_cdag = task.pipeline.get("cdag", default=False, args=True)
 
     # Get (optional) arguments for SPICE
-    predictive = task.pipeline.get('predictive', default=False, args=True)
-    kernel_date = task.pipeline.get('kernel_date', default=None, args=True)
-    no_spice = task.pipeline.get('no_spice', default=False, args=True)
+    predictive = task.pipeline.get("predictive", default=False, args=True)
+    kernel_date = task.pipeline.get("kernel_date", default=None, args=True)
+    no_spice = task.pipeline.get("no_spice", default=False, args=True)
 
     # Get/create Time singleton
-    Time(predictive=predictive,
-         kernel_date=kernel_date,
-         no_spice=no_spice)
+    time_instance = Time(
+        predictive=predictive, kernel_date=kernel_date, no_spice=no_spice
+    )
 
     # Get products directory (folder where final output files will be moved)
-    products_dir = task.pipeline.get('products_dir',
-                                     default=[None], args=True)[0]
+    products_dir = task.pipeline.get("products_dir", default=[None], args=True)[0]
 
     # Get output dir
     output_dir = get_output_dir(task.pipeline)
-    if not is_output_dir(output_dir,
-                         products_dir=products_dir):
-        logger.info(f'Making {output_dir}')
+    if not is_output_dir(output_dir, products_dir=products_dir):
+        logger.info(f"Making {output_dir}")
         os.makedirs(output_dir)
     else:
-        logger.debug(f'Output files will be '
-                    f'saved into folder {output_dir}')
+        logger.debug(f"Output files will be saved into folder {output_dir}")
 
     try:
-        l0_to_trange_cdf(task, 'l0_to_l1_bia_current',
-                         l0_file_list, output_dir,
-                         monthly=monthly,
-                         unique=True,
-                         is_cdag=is_cdag,
-                         overwrite=overwrite)
-    except:
-        logger.exception('L1 Bias current CDF production has failed!')
+        l0_to_trange_cdf(
+            task,
+            "l0_to_l1_bia_current",
+            l0_file_list,
+            output_dir,
+            time_instance=time_instance,
+            monthly=monthly,
+            unique=True,
+            is_cdag=is_cdag,
+            overwrite=overwrite,
+        )
+    except Exception as e:
+        logger.exception(f"L1 Bias current CDF production has failed:\n{e}")