rapidtide 3.0a14__py3-none-any.whl → 3.0a15__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (231) hide show
  1. rapidtide/Colortables.py +1 -1
  2. rapidtide/DerivativeDelay.py +1 -1
  3. rapidtide/OrthoImageItem.py +1 -1
  4. rapidtide/RapidtideDataset.py +3 -1
  5. rapidtide/RegressorRefiner.py +1 -1
  6. rapidtide/calcandfitcorrpairs.py +1 -1
  7. rapidtide/calccoherence.py +1 -1
  8. rapidtide/calcnullsimfunc.py +1 -1
  9. rapidtide/calcsimfunc.py +1 -1
  10. rapidtide/correlate.py +1 -1
  11. rapidtide/data/examples/src/test_findmaxlag.py +1 -1
  12. rapidtide/data/examples/src/testfmri +3 -2
  13. rapidtide/data/examples/src/testfuncs +1 -1
  14. rapidtide/data/examples/src/testhappy +12 -1
  15. rapidtide/data/examples/src/testmodels +33 -0
  16. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.png +0 -0
  17. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.txt +1 -0
  18. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/model.keras +0 -0
  19. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/model_meta.json +167 -0
  20. rapidtide/data/models/model_revised_tf2/model.keras +0 -0
  21. rapidtide/data/models/{model_serdar → model_revised_tf2}/model_meta.json +1 -1
  22. rapidtide/data/models/model_serdar2_tf2/model.keras +0 -0
  23. rapidtide/data/models/{model_serdar2 → model_serdar2_tf2}/model_meta.json +1 -1
  24. rapidtide/data/models/model_serdar_tf2/model.keras +0 -0
  25. rapidtide/data/models/{model_revised → model_serdar_tf2}/model_meta.json +1 -1
  26. rapidtide/dlfilter.py +325 -241
  27. rapidtide/externaltools.py +1 -1
  28. rapidtide/fMRIData_class.py +1 -1
  29. rapidtide/filter.py +1 -8
  30. rapidtide/fit.py +1 -8
  31. rapidtide/happy_supportfuncs.py +30 -1
  32. rapidtide/helper_classes.py +1 -1
  33. rapidtide/io.py +1 -1
  34. rapidtide/linfitfiltpass.py +1 -1
  35. rapidtide/makelaggedtcs.py +1 -1
  36. rapidtide/maskutil.py +1 -1
  37. rapidtide/miscmath.py +1 -8
  38. rapidtide/multiproc.py +1 -1
  39. rapidtide/patchmatch.py +1 -1
  40. rapidtide/peakeval.py +1 -1
  41. rapidtide/qualitycheck.py +1 -1
  42. rapidtide/refinedelay.py +1 -3
  43. rapidtide/refineregressor.py +1 -1
  44. rapidtide/resample.py +1 -1
  45. rapidtide/scripts/adjustoffset.py +1 -1
  46. rapidtide/scripts/aligntcs.py +1 -1
  47. rapidtide/scripts/applydlfilter.py +1 -1
  48. rapidtide/scripts/atlasaverage.py +1 -1
  49. rapidtide/scripts/atlastool.py +1 -1
  50. rapidtide/scripts/calcicc.py +1 -1
  51. rapidtide/scripts/calctexticc.py +1 -1
  52. rapidtide/scripts/calcttest.py +1 -1
  53. rapidtide/scripts/ccorrica.py +1 -1
  54. rapidtide/scripts/delayvar.py +2 -2
  55. rapidtide/scripts/diffrois.py +1 -1
  56. rapidtide/scripts/endtidalproc.py +1 -1
  57. rapidtide/scripts/fdica.py +1 -1
  58. rapidtide/scripts/filtnifti.py +1 -1
  59. rapidtide/scripts/filttc.py +1 -1
  60. rapidtide/scripts/fingerprint.py +1 -1
  61. rapidtide/scripts/fixtr.py +1 -1
  62. rapidtide/scripts/gmscalc.py +1 -1
  63. rapidtide/scripts/happy.py +1 -1
  64. rapidtide/scripts/happy2std.py +1 -1
  65. rapidtide/scripts/happywarp.py +1 -1
  66. rapidtide/scripts/histnifti.py +1 -1
  67. rapidtide/scripts/histtc.py +1 -1
  68. rapidtide/scripts/linfitfilt.py +1 -1
  69. rapidtide/scripts/localflow.py +1 -1
  70. rapidtide/scripts/mergequality.py +1 -1
  71. rapidtide/scripts/pairproc.py +1 -1
  72. rapidtide/scripts/pairwisemergenifti.py +1 -1
  73. rapidtide/scripts/physiofreq.py +1 -1
  74. rapidtide/scripts/pixelcomp.py +1 -1
  75. rapidtide/scripts/plethquality.py +1 -1
  76. rapidtide/scripts/polyfitim.py +1 -1
  77. rapidtide/scripts/proj2flow.py +1 -1
  78. rapidtide/scripts/rankimage.py +1 -1
  79. rapidtide/scripts/rapidtide.py +1 -1
  80. rapidtide/scripts/rapidtide2std.py +1 -1
  81. rapidtide/scripts/resamplenifti.py +1 -1
  82. rapidtide/scripts/resampletc.py +1 -1
  83. rapidtide/scripts/retrolagtcs.py +1 -1
  84. rapidtide/scripts/retroregress.py +1 -1
  85. rapidtide/scripts/roisummarize.py +1 -1
  86. rapidtide/scripts/runqualitycheck.py +1 -1
  87. rapidtide/scripts/showarbcorr.py +1 -1
  88. rapidtide/scripts/showhist.py +1 -1
  89. rapidtide/scripts/showstxcorr.py +1 -1
  90. rapidtide/scripts/showtc.py +1 -1
  91. rapidtide/scripts/showxcorr_legacy.py +1 -1
  92. rapidtide/scripts/showxcorrx.py +1 -1
  93. rapidtide/scripts/showxy.py +1 -1
  94. rapidtide/scripts/simdata.py +1 -1
  95. rapidtide/scripts/spatialdecomp.py +1 -1
  96. rapidtide/scripts/spatialfit.py +1 -1
  97. rapidtide/scripts/spatialmi.py +1 -1
  98. rapidtide/scripts/spectrogram.py +1 -1
  99. rapidtide/scripts/stupidramtricks.py +1 -1
  100. rapidtide/scripts/synthASL.py +1 -1
  101. rapidtide/scripts/tcfrom2col.py +1 -1
  102. rapidtide/scripts/tcfrom3col.py +1 -1
  103. rapidtide/scripts/temporaldecomp.py +1 -1
  104. rapidtide/scripts/testhrv.py +1 -1
  105. rapidtide/scripts/threeD.py +1 -1
  106. rapidtide/scripts/tidepool.py +1 -1
  107. rapidtide/scripts/variabilityizer.py +1 -1
  108. rapidtide/simfuncfit.py +1 -1
  109. rapidtide/stats.py +1 -8
  110. rapidtide/tests/cleanposttest +1 -1
  111. rapidtide/tests/resethappytargets +1 -1
  112. rapidtide/tests/resetrapidtidetargets +1 -1
  113. rapidtide/tests/resettargets +1 -1
  114. rapidtide/tests/runlocaltest +1 -1
  115. rapidtide/tests/showkernels +1 -1
  116. rapidtide/tests/test_aliasedcorrelate.py +1 -1
  117. rapidtide/tests/test_aligntcs.py +1 -1
  118. rapidtide/tests/test_calcicc.py +1 -1
  119. rapidtide/tests/test_congrid.py +1 -1
  120. rapidtide/tests/test_correlate.py +1 -1
  121. rapidtide/tests/test_corrpass.py +1 -1
  122. rapidtide/tests/test_delayestimation.py +1 -1
  123. rapidtide/tests/test_doresample.py +1 -1
  124. rapidtide/tests/test_fastresampler.py +1 -1
  125. rapidtide/tests/test_findmaxlag.py +1 -1
  126. rapidtide/tests/test_fullrunhappy_v1.py +2 -2
  127. rapidtide/tests/test_fullrunhappy_v2.py +2 -2
  128. rapidtide/tests/test_fullrunhappy_v3.py +2 -2
  129. rapidtide/tests/test_fullrunhappy_v4.py +2 -2
  130. rapidtide/tests/test_fullrunhappy_v5.py +1 -3
  131. rapidtide/tests/test_fullrunrapidtide_v1.py +1 -1
  132. rapidtide/tests/test_fullrunrapidtide_v2.py +3 -1
  133. rapidtide/tests/test_fullrunrapidtide_v3.py +1 -1
  134. rapidtide/tests/test_fullrunrapidtide_v4.py +1 -1
  135. rapidtide/tests/test_fullrunrapidtide_v5.py +1 -1
  136. rapidtide/tests/test_fullrunrapidtide_v6.py +1 -1
  137. rapidtide/tests/test_io.py +1 -1
  138. rapidtide/tests/test_linfitfiltpass.py +1 -1
  139. rapidtide/tests/test_mi.py +1 -1
  140. rapidtide/tests/test_miscmath.py +1 -1
  141. rapidtide/tests/test_motionregress.py +1 -1
  142. rapidtide/tests/test_nullcorr.py +1 -1
  143. rapidtide/tests/test_padvec.py +1 -1
  144. rapidtide/tests/test_phaseanalysis.py +1 -1
  145. rapidtide/tests/test_rapidtideparser.py +1 -1
  146. rapidtide/tests/test_refinedelay.py +1 -2
  147. rapidtide/tests/test_runmisc.py +1 -1
  148. rapidtide/tests/test_sharedmem.py +1 -1
  149. rapidtide/tests/test_simulate.py +1 -1
  150. rapidtide/tests/test_stcorrelate.py +1 -1
  151. rapidtide/tests/test_timeshift.py +1 -1
  152. rapidtide/tests/test_valtoindex.py +1 -1
  153. rapidtide/tests/test_zRapidtideDataset.py +1 -1
  154. rapidtide/tests/utils.py +1 -1
  155. rapidtide/transformerdlfilter.py +2 -4
  156. rapidtide/util.py +37 -14
  157. rapidtide/voxelData.py +278 -0
  158. rapidtide/wiener.py +1 -1
  159. rapidtide/wiener2.py +1 -1
  160. rapidtide/workflows/adjustoffset.py +1 -1
  161. rapidtide/workflows/aligntcs.py +1 -1
  162. rapidtide/workflows/applydlfilter.py +20 -65
  163. rapidtide/workflows/atlasaverage.py +1 -1
  164. rapidtide/workflows/atlastool.py +1 -1
  165. rapidtide/workflows/calctexticc.py +1 -1
  166. rapidtide/workflows/ccorrica.py +1 -1
  167. rapidtide/workflows/cleanregressor.py +243 -0
  168. rapidtide/workflows/delayestimation.py +488 -0
  169. rapidtide/workflows/delayvar.py +1 -1
  170. rapidtide/workflows/diffrois.py +1 -1
  171. rapidtide/workflows/endtidalproc.py +1 -1
  172. rapidtide/workflows/fdica.py +1 -1
  173. rapidtide/workflows/filtnifti.py +1 -1
  174. rapidtide/workflows/filttc.py +1 -1
  175. rapidtide/workflows/fixtr.py +1 -1
  176. rapidtide/workflows/gmscalc.py +1 -1
  177. rapidtide/workflows/happy.py +49 -3
  178. rapidtide/workflows/happy2std.py +1 -1
  179. rapidtide/workflows/happy_parser.py +30 -6
  180. rapidtide/workflows/histnifti.py +1 -1
  181. rapidtide/workflows/histtc.py +1 -1
  182. rapidtide/workflows/linfitfilt.py +1 -1
  183. rapidtide/workflows/localflow.py +1 -1
  184. rapidtide/workflows/mergequality.py +1 -1
  185. rapidtide/workflows/niftidecomp.py +1 -1
  186. rapidtide/workflows/niftistats.py +1 -1
  187. rapidtide/workflows/pairproc.py +1 -1
  188. rapidtide/workflows/pairwisemergenifti.py +1 -1
  189. rapidtide/workflows/parser_funcs.py +1 -1
  190. rapidtide/workflows/physiofreq.py +1 -1
  191. rapidtide/workflows/pixelcomp.py +1 -1
  192. rapidtide/workflows/plethquality.py +1 -1
  193. rapidtide/workflows/polyfitim.py +1 -1
  194. rapidtide/workflows/proj2flow.py +1 -1
  195. rapidtide/workflows/rankimage.py +1 -1
  196. rapidtide/workflows/rapidtide.py +163 -679
  197. rapidtide/workflows/rapidtide2std.py +1 -1
  198. rapidtide/workflows/rapidtide_parser.py +1 -98
  199. rapidtide/workflows/regressfrommaps.py +4 -48
  200. rapidtide/workflows/resamplenifti.py +1 -1
  201. rapidtide/workflows/resampletc.py +1 -1
  202. rapidtide/workflows/retrolagtcs.py +1 -1
  203. rapidtide/workflows/retroregress.py +1 -1
  204. rapidtide/workflows/roisummarize.py +1 -1
  205. rapidtide/workflows/runqualitycheck.py +1 -1
  206. rapidtide/workflows/showarbcorr.py +1 -1
  207. rapidtide/workflows/showhist.py +1 -1
  208. rapidtide/workflows/showstxcorr.py +1 -1
  209. rapidtide/workflows/showtc.py +1 -1
  210. rapidtide/workflows/showxcorrx.py +1 -1
  211. rapidtide/workflows/showxy.py +1 -1
  212. rapidtide/workflows/simdata.py +1 -1
  213. rapidtide/workflows/spatialfit.py +1 -1
  214. rapidtide/workflows/spatialmi.py +1 -1
  215. rapidtide/workflows/spectrogram.py +1 -1
  216. rapidtide/workflows/synthASL.py +1 -1
  217. rapidtide/workflows/tcfrom2col.py +1 -1
  218. rapidtide/workflows/tcfrom3col.py +1 -1
  219. rapidtide/workflows/tidepool.py +2 -1
  220. rapidtide/workflows/utils.py +1 -1
  221. rapidtide/workflows/variabilityizer.py +1 -1
  222. {rapidtide-3.0a14.dist-info → rapidtide-3.0a15.dist-info}/METADATA +1 -1
  223. rapidtide-3.0a15.dist-info/RECORD +353 -0
  224. {rapidtide-3.0a14.dist-info → rapidtide-3.0a15.dist-info}/WHEEL +1 -1
  225. rapidtide/data/models/model_revised/model.h5 +0 -0
  226. rapidtide/data/models/model_serdar/model.h5 +0 -0
  227. rapidtide/data/models/model_serdar2/model.h5 +0 -0
  228. rapidtide-3.0a14.dist-info/RECORD +0 -345
  229. {rapidtide-3.0a14.dist-info → rapidtide-3.0a15.dist-info}/entry_points.txt +0 -0
  230. {rapidtide-3.0a14.dist-info → rapidtide-3.0a15.dist-info}/licenses/LICENSE +0 -0
  231. {rapidtide-3.0a14.dist-info → rapidtide-3.0a15.dist-info}/top_level.txt +0 -0
rapidtide/externaltools.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/fMRIData_class.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/filter.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
@@ -44,13 +44,6 @@ if pyfftwpresent:
44
44
  pyfftw.interfaces.cache.enable()
45
45
 
46
46
  # ----------------------------------------- Conditional imports ---------------------------------------
47
- try:
48
- from memory_profiler import profile
49
-
50
- memprofilerexists = True
51
- except ImportError:
52
- memprofilerexists = False
53
-
54
47
  try:
55
48
  from numba import jit
56
49
  except ImportError:
rapidtide/fit.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
@@ -40,13 +40,6 @@ MAXLINES = 10000000
40
40
  donotbeaggressive = True
41
41
 
42
42
  # ----------------------------------------- Conditional imports ---------------------------------------
43
- try:
44
- from memory_profiler import profile
45
-
46
- memprofilerexists = True
47
- except ImportError:
48
- memprofilerexists = False
49
-
50
43
  try:
51
44
  from numba import jit
52
45
  except ImportError:
rapidtide/happy_supportfuncs.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
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  #
4
- # Copyright 2018-2024 Blaise Frederick
4
+ # Copyright 2018-2025 Blaise Frederick
5
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  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
@@ -535,6 +535,29 @@ def approximateentropy(waveform, m, r):
535
535
  return abs(_phi(m + 1) - _phi(m))
536
536
 
537
537
 
538
+ def summarizerun(theinfodict, getkeys=False):
539
+ keylist = [
540
+ "corrcoeff_raw2pleth",
541
+ "corrcoeff_filt2pleth",
542
+ "E_sqi_mean_pleth",
543
+ "E_sqi_mean_bold",
544
+ "S_sqi_mean_pleth",
545
+ "S_sqi_mean_bold",
546
+ "K_sqi_mean_pleth",
547
+ "K_sqi_mean_bold",
548
+ ]
549
+ if getkeys:
550
+ return ",".join(keylist)
551
+ else:
552
+ outputline = []
553
+ for thekey in keylist:
554
+ try:
555
+ outputline.append(str(theinfodict[thekey]))
556
+ except KeyError:
557
+ outputline.append("")
558
+ return ",".join(outputline)
559
+
560
+
538
561
  def entropy(waveform):
539
562
  return -np.sum(np.square(waveform) * np.nan_to_num(np.log2(np.square(waveform))))
540
563
 
@@ -632,17 +655,23 @@ def calcplethquality(
632
655
  E_waveform[i] = approximateentropy(dt_waveform[startpt : endpt + 1], 2, r)
633
656
 
634
657
  S_sqi_mean = np.mean(S_waveform)
658
+ S_sqi_median = np.median(S_waveform)
635
659
  S_sqi_std = np.std(S_waveform)
636
660
  K_sqi_mean = np.mean(K_waveform)
661
+ K_sqi_median = np.median(K_waveform)
637
662
  K_sqi_std = np.std(K_waveform)
638
663
  E_sqi_mean = np.mean(E_waveform)
664
+ E_sqi_median = np.median(E_waveform)
639
665
  E_sqi_std = np.std(E_waveform)
640
666
 
641
667
  infodict["S_sqi_mean" + suffix] = S_sqi_mean
668
+ infodict["S_sqi_median" + suffix] = S_sqi_median
642
669
  infodict["S_sqi_std" + suffix] = S_sqi_std
643
670
  infodict["K_sqi_mean" + suffix] = K_sqi_mean
671
+ infodict["K_sqi_median" + suffix] = K_sqi_median
644
672
  infodict["K_sqi_std" + suffix] = K_sqi_std
645
673
  infodict["E_sqi_mean" + suffix] = E_sqi_mean
674
+ infodict["E_sqi_median" + suffix] = E_sqi_median
646
675
  infodict["E_sqi_std" + suffix] = E_sqi_std
647
676
 
648
677
  if outputlevel > 1:
rapidtide/helper_classes.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
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  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/io.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
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  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/linfitfiltpass.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
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  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/makelaggedtcs.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
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  # you may not use this file except in compliance with the License.
rapidtide/maskutil.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
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  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/miscmath.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
@@ -47,13 +47,6 @@ MAXLINES = 10000000
47
47
  donotbeaggressive = True
48
48
 
49
49
  # ----------------------------------------- Conditional imports ---------------------------------------
50
- try:
51
- from memory_profiler import profile
52
-
53
- memprofilerexists = True
54
- except ImportError:
55
- memprofilerexists = False
56
-
57
50
  try:
58
51
  from numba import jit
59
52
  except ImportError:
rapidtide/multiproc.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/patchmatch.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick (except for some routines listed below)
4
+ # Copyright 2016-2025 Blaise Frederick (except for some routines listed below)
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/peakeval.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/qualitycheck.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2024-2024 Blaise Frederick
4
+ # Copyright 2024-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/refinedelay.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
@@ -108,7 +108,6 @@ def trainratiotooffset(
108
108
  "mp_chunksize": 1000,
109
109
  "showprogressbar": False,
110
110
  "alwaysmultiproc": False,
111
- "memprofile": False,
112
111
  "focaldebug": debug,
113
112
  "fmrifreq": 1.0 / sampletime,
114
113
  "textio": False,
@@ -408,7 +407,6 @@ def getderivratios(
408
407
  mp_chunksize=optiondict["mp_chunksize"],
409
408
  showprogressbar=optiondict["showprogressbar"],
410
409
  alwaysmultiproc=optiondict["alwaysmultiproc"],
411
- memprofile=optiondict["memprofile"],
412
410
  debug=debug,
413
411
  )
414
412
 
rapidtide/refineregressor.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/resample.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/adjustoffset.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/aligntcs.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/applydlfilter.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/atlasaverage.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/atlastool.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/calcicc.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/calctexticc.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/calcttest.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/ccorrica.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/delayvar.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
@@ -16,8 +16,8 @@
16
16
  # limitations under the License.
17
17
  #
18
18
  #
19
- import rapidtide.workflows.parser_funcs as pf
20
19
  import rapidtide.workflows.delayvar as theworkflow
20
+ import rapidtide.workflows.parser_funcs as pf
21
21
 
22
22
 
23
23
  def entrypoint():
rapidtide/scripts/diffrois.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/endtidalproc.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/fdica.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/filtnifti.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/filttc.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/fingerprint.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/fixtr.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/gmscalc.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/happy.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/happy2std.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/happywarp.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/histnifti.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/histtc.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/linfitfilt.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/localflow.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/mergequality.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/pairproc.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/pairwisemergenifti.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/physiofreq.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/pixelcomp.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/plethquality.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/polyfitim.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/proj2flow.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/rankimage.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.