rapidtide 3.0a14__py3-none-any.whl → 3.0a15__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (231) hide show
  1. rapidtide/Colortables.py +1 -1
  2. rapidtide/DerivativeDelay.py +1 -1
  3. rapidtide/OrthoImageItem.py +1 -1
  4. rapidtide/RapidtideDataset.py +3 -1
  5. rapidtide/RegressorRefiner.py +1 -1
  6. rapidtide/calcandfitcorrpairs.py +1 -1
  7. rapidtide/calccoherence.py +1 -1
  8. rapidtide/calcnullsimfunc.py +1 -1
  9. rapidtide/calcsimfunc.py +1 -1
  10. rapidtide/correlate.py +1 -1
  11. rapidtide/data/examples/src/test_findmaxlag.py +1 -1
  12. rapidtide/data/examples/src/testfmri +3 -2
  13. rapidtide/data/examples/src/testfuncs +1 -1
  14. rapidtide/data/examples/src/testhappy +12 -1
  15. rapidtide/data/examples/src/testmodels +33 -0
  16. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.png +0 -0
  17. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.txt +1 -0
  18. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/model.keras +0 -0
  19. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/model_meta.json +167 -0
  20. rapidtide/data/models/model_revised_tf2/model.keras +0 -0
  21. rapidtide/data/models/{model_serdar → model_revised_tf2}/model_meta.json +1 -1
  22. rapidtide/data/models/model_serdar2_tf2/model.keras +0 -0
  23. rapidtide/data/models/{model_serdar2 → model_serdar2_tf2}/model_meta.json +1 -1
  24. rapidtide/data/models/model_serdar_tf2/model.keras +0 -0
  25. rapidtide/data/models/{model_revised → model_serdar_tf2}/model_meta.json +1 -1
  26. rapidtide/dlfilter.py +325 -241
  27. rapidtide/externaltools.py +1 -1
  28. rapidtide/fMRIData_class.py +1 -1
  29. rapidtide/filter.py +1 -8
  30. rapidtide/fit.py +1 -8
  31. rapidtide/happy_supportfuncs.py +30 -1
  32. rapidtide/helper_classes.py +1 -1
  33. rapidtide/io.py +1 -1
  34. rapidtide/linfitfiltpass.py +1 -1
  35. rapidtide/makelaggedtcs.py +1 -1
  36. rapidtide/maskutil.py +1 -1
  37. rapidtide/miscmath.py +1 -8
  38. rapidtide/multiproc.py +1 -1
  39. rapidtide/patchmatch.py +1 -1
  40. rapidtide/peakeval.py +1 -1
  41. rapidtide/qualitycheck.py +1 -1
  42. rapidtide/refinedelay.py +1 -3
  43. rapidtide/refineregressor.py +1 -1
  44. rapidtide/resample.py +1 -1
  45. rapidtide/scripts/adjustoffset.py +1 -1
  46. rapidtide/scripts/aligntcs.py +1 -1
  47. rapidtide/scripts/applydlfilter.py +1 -1
  48. rapidtide/scripts/atlasaverage.py +1 -1
  49. rapidtide/scripts/atlastool.py +1 -1
  50. rapidtide/scripts/calcicc.py +1 -1
  51. rapidtide/scripts/calctexticc.py +1 -1
  52. rapidtide/scripts/calcttest.py +1 -1
  53. rapidtide/scripts/ccorrica.py +1 -1
  54. rapidtide/scripts/delayvar.py +2 -2
  55. rapidtide/scripts/diffrois.py +1 -1
  56. rapidtide/scripts/endtidalproc.py +1 -1
  57. rapidtide/scripts/fdica.py +1 -1
  58. rapidtide/scripts/filtnifti.py +1 -1
  59. rapidtide/scripts/filttc.py +1 -1
  60. rapidtide/scripts/fingerprint.py +1 -1
  61. rapidtide/scripts/fixtr.py +1 -1
  62. rapidtide/scripts/gmscalc.py +1 -1
  63. rapidtide/scripts/happy.py +1 -1
  64. rapidtide/scripts/happy2std.py +1 -1
  65. rapidtide/scripts/happywarp.py +1 -1
  66. rapidtide/scripts/histnifti.py +1 -1
  67. rapidtide/scripts/histtc.py +1 -1
  68. rapidtide/scripts/linfitfilt.py +1 -1
  69. rapidtide/scripts/localflow.py +1 -1
  70. rapidtide/scripts/mergequality.py +1 -1
  71. rapidtide/scripts/pairproc.py +1 -1
  72. rapidtide/scripts/pairwisemergenifti.py +1 -1
  73. rapidtide/scripts/physiofreq.py +1 -1
  74. rapidtide/scripts/pixelcomp.py +1 -1
  75. rapidtide/scripts/plethquality.py +1 -1
  76. rapidtide/scripts/polyfitim.py +1 -1
  77. rapidtide/scripts/proj2flow.py +1 -1
  78. rapidtide/scripts/rankimage.py +1 -1
  79. rapidtide/scripts/rapidtide.py +1 -1
  80. rapidtide/scripts/rapidtide2std.py +1 -1
  81. rapidtide/scripts/resamplenifti.py +1 -1
  82. rapidtide/scripts/resampletc.py +1 -1
  83. rapidtide/scripts/retrolagtcs.py +1 -1
  84. rapidtide/scripts/retroregress.py +1 -1
  85. rapidtide/scripts/roisummarize.py +1 -1
  86. rapidtide/scripts/runqualitycheck.py +1 -1
  87. rapidtide/scripts/showarbcorr.py +1 -1
  88. rapidtide/scripts/showhist.py +1 -1
  89. rapidtide/scripts/showstxcorr.py +1 -1
  90. rapidtide/scripts/showtc.py +1 -1
  91. rapidtide/scripts/showxcorr_legacy.py +1 -1
  92. rapidtide/scripts/showxcorrx.py +1 -1
  93. rapidtide/scripts/showxy.py +1 -1
  94. rapidtide/scripts/simdata.py +1 -1
  95. rapidtide/scripts/spatialdecomp.py +1 -1
  96. rapidtide/scripts/spatialfit.py +1 -1
  97. rapidtide/scripts/spatialmi.py +1 -1
  98. rapidtide/scripts/spectrogram.py +1 -1
  99. rapidtide/scripts/stupidramtricks.py +1 -1
  100. rapidtide/scripts/synthASL.py +1 -1
  101. rapidtide/scripts/tcfrom2col.py +1 -1
  102. rapidtide/scripts/tcfrom3col.py +1 -1
  103. rapidtide/scripts/temporaldecomp.py +1 -1
  104. rapidtide/scripts/testhrv.py +1 -1
  105. rapidtide/scripts/threeD.py +1 -1
  106. rapidtide/scripts/tidepool.py +1 -1
  107. rapidtide/scripts/variabilityizer.py +1 -1
  108. rapidtide/simfuncfit.py +1 -1
  109. rapidtide/stats.py +1 -8
  110. rapidtide/tests/cleanposttest +1 -1
  111. rapidtide/tests/resethappytargets +1 -1
  112. rapidtide/tests/resetrapidtidetargets +1 -1
  113. rapidtide/tests/resettargets +1 -1
  114. rapidtide/tests/runlocaltest +1 -1
  115. rapidtide/tests/showkernels +1 -1
  116. rapidtide/tests/test_aliasedcorrelate.py +1 -1
  117. rapidtide/tests/test_aligntcs.py +1 -1
  118. rapidtide/tests/test_calcicc.py +1 -1
  119. rapidtide/tests/test_congrid.py +1 -1
  120. rapidtide/tests/test_correlate.py +1 -1
  121. rapidtide/tests/test_corrpass.py +1 -1
  122. rapidtide/tests/test_delayestimation.py +1 -1
  123. rapidtide/tests/test_doresample.py +1 -1
  124. rapidtide/tests/test_fastresampler.py +1 -1
  125. rapidtide/tests/test_findmaxlag.py +1 -1
  126. rapidtide/tests/test_fullrunhappy_v1.py +2 -2
  127. rapidtide/tests/test_fullrunhappy_v2.py +2 -2
  128. rapidtide/tests/test_fullrunhappy_v3.py +2 -2
  129. rapidtide/tests/test_fullrunhappy_v4.py +2 -2
  130. rapidtide/tests/test_fullrunhappy_v5.py +1 -3
  131. rapidtide/tests/test_fullrunrapidtide_v1.py +1 -1
  132. rapidtide/tests/test_fullrunrapidtide_v2.py +3 -1
  133. rapidtide/tests/test_fullrunrapidtide_v3.py +1 -1
  134. rapidtide/tests/test_fullrunrapidtide_v4.py +1 -1
  135. rapidtide/tests/test_fullrunrapidtide_v5.py +1 -1
  136. rapidtide/tests/test_fullrunrapidtide_v6.py +1 -1
  137. rapidtide/tests/test_io.py +1 -1
  138. rapidtide/tests/test_linfitfiltpass.py +1 -1
  139. rapidtide/tests/test_mi.py +1 -1
  140. rapidtide/tests/test_miscmath.py +1 -1
  141. rapidtide/tests/test_motionregress.py +1 -1
  142. rapidtide/tests/test_nullcorr.py +1 -1
  143. rapidtide/tests/test_padvec.py +1 -1
  144. rapidtide/tests/test_phaseanalysis.py +1 -1
  145. rapidtide/tests/test_rapidtideparser.py +1 -1
  146. rapidtide/tests/test_refinedelay.py +1 -2
  147. rapidtide/tests/test_runmisc.py +1 -1
  148. rapidtide/tests/test_sharedmem.py +1 -1
  149. rapidtide/tests/test_simulate.py +1 -1
  150. rapidtide/tests/test_stcorrelate.py +1 -1
  151. rapidtide/tests/test_timeshift.py +1 -1
  152. rapidtide/tests/test_valtoindex.py +1 -1
  153. rapidtide/tests/test_zRapidtideDataset.py +1 -1
  154. rapidtide/tests/utils.py +1 -1
  155. rapidtide/transformerdlfilter.py +2 -4
  156. rapidtide/util.py +37 -14
  157. rapidtide/voxelData.py +278 -0
  158. rapidtide/wiener.py +1 -1
  159. rapidtide/wiener2.py +1 -1
  160. rapidtide/workflows/adjustoffset.py +1 -1
  161. rapidtide/workflows/aligntcs.py +1 -1
  162. rapidtide/workflows/applydlfilter.py +20 -65
  163. rapidtide/workflows/atlasaverage.py +1 -1
  164. rapidtide/workflows/atlastool.py +1 -1
  165. rapidtide/workflows/calctexticc.py +1 -1
  166. rapidtide/workflows/ccorrica.py +1 -1
  167. rapidtide/workflows/cleanregressor.py +243 -0
  168. rapidtide/workflows/delayestimation.py +488 -0
  169. rapidtide/workflows/delayvar.py +1 -1
  170. rapidtide/workflows/diffrois.py +1 -1
  171. rapidtide/workflows/endtidalproc.py +1 -1
  172. rapidtide/workflows/fdica.py +1 -1
  173. rapidtide/workflows/filtnifti.py +1 -1
  174. rapidtide/workflows/filttc.py +1 -1
  175. rapidtide/workflows/fixtr.py +1 -1
  176. rapidtide/workflows/gmscalc.py +1 -1
  177. rapidtide/workflows/happy.py +49 -3
  178. rapidtide/workflows/happy2std.py +1 -1
  179. rapidtide/workflows/happy_parser.py +30 -6
  180. rapidtide/workflows/histnifti.py +1 -1
  181. rapidtide/workflows/histtc.py +1 -1
  182. rapidtide/workflows/linfitfilt.py +1 -1
  183. rapidtide/workflows/localflow.py +1 -1
  184. rapidtide/workflows/mergequality.py +1 -1
  185. rapidtide/workflows/niftidecomp.py +1 -1
  186. rapidtide/workflows/niftistats.py +1 -1
  187. rapidtide/workflows/pairproc.py +1 -1
  188. rapidtide/workflows/pairwisemergenifti.py +1 -1
  189. rapidtide/workflows/parser_funcs.py +1 -1
  190. rapidtide/workflows/physiofreq.py +1 -1
  191. rapidtide/workflows/pixelcomp.py +1 -1
  192. rapidtide/workflows/plethquality.py +1 -1
  193. rapidtide/workflows/polyfitim.py +1 -1
  194. rapidtide/workflows/proj2flow.py +1 -1
  195. rapidtide/workflows/rankimage.py +1 -1
  196. rapidtide/workflows/rapidtide.py +163 -679
  197. rapidtide/workflows/rapidtide2std.py +1 -1
  198. rapidtide/workflows/rapidtide_parser.py +1 -98
  199. rapidtide/workflows/regressfrommaps.py +4 -48
  200. rapidtide/workflows/resamplenifti.py +1 -1
  201. rapidtide/workflows/resampletc.py +1 -1
  202. rapidtide/workflows/retrolagtcs.py +1 -1
  203. rapidtide/workflows/retroregress.py +1 -1
  204. rapidtide/workflows/roisummarize.py +1 -1
  205. rapidtide/workflows/runqualitycheck.py +1 -1
  206. rapidtide/workflows/showarbcorr.py +1 -1
  207. rapidtide/workflows/showhist.py +1 -1
  208. rapidtide/workflows/showstxcorr.py +1 -1
  209. rapidtide/workflows/showtc.py +1 -1
  210. rapidtide/workflows/showxcorrx.py +1 -1
  211. rapidtide/workflows/showxy.py +1 -1
  212. rapidtide/workflows/simdata.py +1 -1
  213. rapidtide/workflows/spatialfit.py +1 -1
  214. rapidtide/workflows/spatialmi.py +1 -1
  215. rapidtide/workflows/spectrogram.py +1 -1
  216. rapidtide/workflows/synthASL.py +1 -1
  217. rapidtide/workflows/tcfrom2col.py +1 -1
  218. rapidtide/workflows/tcfrom3col.py +1 -1
  219. rapidtide/workflows/tidepool.py +2 -1
  220. rapidtide/workflows/utils.py +1 -1
  221. rapidtide/workflows/variabilityizer.py +1 -1
  222. {rapidtide-3.0a14.dist-info → rapidtide-3.0a15.dist-info}/METADATA +1 -1
  223. rapidtide-3.0a15.dist-info/RECORD +353 -0
  224. {rapidtide-3.0a14.dist-info → rapidtide-3.0a15.dist-info}/WHEEL +1 -1
  225. rapidtide/data/models/model_revised/model.h5 +0 -0
  226. rapidtide/data/models/model_serdar/model.h5 +0 -0
  227. rapidtide/data/models/model_serdar2/model.h5 +0 -0
  228. rapidtide-3.0a14.dist-info/RECORD +0 -345
  229. {rapidtide-3.0a14.dist-info → rapidtide-3.0a15.dist-info}/entry_points.txt +0 -0
  230. {rapidtide-3.0a14.dist-info → rapidtide-3.0a15.dist-info}/licenses/LICENSE +0 -0
  231. {rapidtide-3.0a14.dist-info → rapidtide-3.0a15.dist-info}/top_level.txt +0 -0
rapidtide-3.0a14.dist-info/RECORD DELETED
@@ -1,345 +0,0 @@
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