rapidtide 3.0a13__py3-none-any.whl → 3.0a15__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (232) hide show
  1. rapidtide/Colortables.py +1 -1
  2. rapidtide/DerivativeDelay.py +4 -2
  3. rapidtide/OrthoImageItem.py +1 -1
  4. rapidtide/RapidtideDataset.py +3 -1
  5. rapidtide/RegressorRefiner.py +1 -1
  6. rapidtide/calcandfitcorrpairs.py +1 -1
  7. rapidtide/calccoherence.py +1 -1
  8. rapidtide/calcnullsimfunc.py +1 -1
  9. rapidtide/calcsimfunc.py +1 -1
  10. rapidtide/correlate.py +1 -1
  11. rapidtide/data/examples/src/test_findmaxlag.py +1 -1
  12. rapidtide/data/examples/src/testdelayvar +2 -1
  13. rapidtide/data/examples/src/testfmri +3 -2
  14. rapidtide/data/examples/src/testfuncs +1 -1
  15. rapidtide/data/examples/src/testhappy +12 -1
  16. rapidtide/data/examples/src/testmodels +33 -0
  17. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.png +0 -0
  18. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.txt +1 -0
  19. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/model.keras +0 -0
  20. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/model_meta.json +167 -0
  21. rapidtide/data/models/model_revised_tf2/model.keras +0 -0
  22. rapidtide/data/models/{model_serdar → model_revised_tf2}/model_meta.json +1 -1
  23. rapidtide/data/models/model_serdar2_tf2/model.keras +0 -0
  24. rapidtide/data/models/{model_serdar2 → model_serdar2_tf2}/model_meta.json +1 -1
  25. rapidtide/data/models/model_serdar_tf2/model.keras +0 -0
  26. rapidtide/data/models/{model_revised → model_serdar_tf2}/model_meta.json +1 -1
  27. rapidtide/dlfilter.py +325 -241
  28. rapidtide/externaltools.py +1 -1
  29. rapidtide/fMRIData_class.py +1 -1
  30. rapidtide/filter.py +1 -8
  31. rapidtide/fit.py +1 -8
  32. rapidtide/happy_supportfuncs.py +30 -1
  33. rapidtide/helper_classes.py +1 -1
  34. rapidtide/io.py +1 -1
  35. rapidtide/linfitfiltpass.py +3 -1
  36. rapidtide/makelaggedtcs.py +9 -6
  37. rapidtide/maskutil.py +1 -1
  38. rapidtide/miscmath.py +1 -8
  39. rapidtide/multiproc.py +9 -12
  40. rapidtide/patchmatch.py +1 -1
  41. rapidtide/peakeval.py +1 -1
  42. rapidtide/qualitycheck.py +1 -1
  43. rapidtide/refinedelay.py +174 -89
  44. rapidtide/refineregressor.py +1 -1
  45. rapidtide/resample.py +1 -1
  46. rapidtide/scripts/adjustoffset.py +1 -1
  47. rapidtide/scripts/aligntcs.py +1 -1
  48. rapidtide/scripts/applydlfilter.py +1 -1
  49. rapidtide/scripts/atlasaverage.py +1 -1
  50. rapidtide/scripts/atlastool.py +1 -1
  51. rapidtide/scripts/calcicc.py +1 -1
  52. rapidtide/scripts/calctexticc.py +1 -1
  53. rapidtide/scripts/calcttest.py +1 -1
  54. rapidtide/scripts/ccorrica.py +1 -1
  55. rapidtide/scripts/delayvar.py +2 -2
  56. rapidtide/scripts/diffrois.py +1 -1
  57. rapidtide/scripts/endtidalproc.py +1 -1
  58. rapidtide/scripts/fdica.py +1 -1
  59. rapidtide/scripts/filtnifti.py +1 -1
  60. rapidtide/scripts/filttc.py +1 -1
  61. rapidtide/scripts/fingerprint.py +1 -1
  62. rapidtide/scripts/fixtr.py +1 -1
  63. rapidtide/scripts/gmscalc.py +1 -1
  64. rapidtide/scripts/happy.py +1 -1
  65. rapidtide/scripts/happy2std.py +1 -1
  66. rapidtide/scripts/happywarp.py +1 -1
  67. rapidtide/scripts/histnifti.py +1 -1
  68. rapidtide/scripts/histtc.py +1 -1
  69. rapidtide/scripts/linfitfilt.py +1 -1
  70. rapidtide/scripts/localflow.py +1 -1
  71. rapidtide/scripts/mergequality.py +1 -1
  72. rapidtide/scripts/pairproc.py +1 -1
  73. rapidtide/scripts/pairwisemergenifti.py +1 -1
  74. rapidtide/scripts/physiofreq.py +1 -1
  75. rapidtide/scripts/pixelcomp.py +1 -1
  76. rapidtide/scripts/plethquality.py +1 -1
  77. rapidtide/scripts/polyfitim.py +1 -1
  78. rapidtide/scripts/proj2flow.py +1 -1
  79. rapidtide/scripts/rankimage.py +1 -1
  80. rapidtide/scripts/rapidtide.py +1 -1
  81. rapidtide/scripts/rapidtide2std.py +1 -1
  82. rapidtide/scripts/resamplenifti.py +1 -1
  83. rapidtide/scripts/resampletc.py +1 -1
  84. rapidtide/scripts/retrolagtcs.py +1 -1
  85. rapidtide/scripts/retroregress.py +1 -1
  86. rapidtide/scripts/roisummarize.py +1 -1
  87. rapidtide/scripts/runqualitycheck.py +1 -1
  88. rapidtide/scripts/showarbcorr.py +1 -1
  89. rapidtide/scripts/showhist.py +1 -1
  90. rapidtide/scripts/showstxcorr.py +1 -1
  91. rapidtide/scripts/showtc.py +1 -1
  92. rapidtide/scripts/showxcorr_legacy.py +1 -1
  93. rapidtide/scripts/showxcorrx.py +1 -1
  94. rapidtide/scripts/showxy.py +1 -1
  95. rapidtide/scripts/simdata.py +1 -1
  96. rapidtide/scripts/spatialdecomp.py +1 -1
  97. rapidtide/scripts/spatialfit.py +1 -1
  98. rapidtide/scripts/spatialmi.py +1 -1
  99. rapidtide/scripts/spectrogram.py +1 -1
  100. rapidtide/scripts/stupidramtricks.py +1 -1
  101. rapidtide/scripts/synthASL.py +1 -1
  102. rapidtide/scripts/tcfrom2col.py +1 -1
  103. rapidtide/scripts/tcfrom3col.py +1 -1
  104. rapidtide/scripts/temporaldecomp.py +1 -1
  105. rapidtide/scripts/testhrv.py +1 -1
  106. rapidtide/scripts/threeD.py +1 -1
  107. rapidtide/scripts/tidepool.py +1 -1
  108. rapidtide/scripts/variabilityizer.py +1 -1
  109. rapidtide/simfuncfit.py +1 -1
  110. rapidtide/stats.py +1 -8
  111. rapidtide/tests/cleanposttest +1 -1
  112. rapidtide/tests/resethappytargets +1 -1
  113. rapidtide/tests/resetrapidtidetargets +1 -1
  114. rapidtide/tests/resettargets +1 -1
  115. rapidtide/tests/runlocaltest +1 -1
  116. rapidtide/tests/showkernels +1 -1
  117. rapidtide/tests/test_aliasedcorrelate.py +1 -1
  118. rapidtide/tests/test_aligntcs.py +1 -1
  119. rapidtide/tests/test_calcicc.py +1 -1
  120. rapidtide/tests/test_congrid.py +1 -1
  121. rapidtide/tests/test_correlate.py +1 -1
  122. rapidtide/tests/test_corrpass.py +1 -1
  123. rapidtide/tests/test_delayestimation.py +1 -1
  124. rapidtide/tests/test_doresample.py +1 -1
  125. rapidtide/tests/test_fastresampler.py +1 -1
  126. rapidtide/tests/test_findmaxlag.py +1 -1
  127. rapidtide/tests/test_fullrunhappy_v1.py +15 -7
  128. rapidtide/tests/test_fullrunhappy_v2.py +18 -10
  129. rapidtide/tests/test_fullrunhappy_v3.py +18 -10
  130. rapidtide/tests/test_fullrunhappy_v4.py +18 -10
  131. rapidtide/tests/test_fullrunhappy_v5.py +15 -9
  132. rapidtide/tests/test_fullrunrapidtide_v1.py +19 -11
  133. rapidtide/tests/test_fullrunrapidtide_v2.py +24 -14
  134. rapidtide/tests/test_fullrunrapidtide_v3.py +15 -7
  135. rapidtide/tests/test_fullrunrapidtide_v4.py +15 -8
  136. rapidtide/tests/test_fullrunrapidtide_v5.py +13 -5
  137. rapidtide/tests/test_fullrunrapidtide_v6.py +24 -16
  138. rapidtide/tests/test_io.py +1 -1
  139. rapidtide/tests/test_linfitfiltpass.py +1 -1
  140. rapidtide/tests/test_mi.py +1 -1
  141. rapidtide/tests/test_miscmath.py +1 -1
  142. rapidtide/tests/test_motionregress.py +1 -1
  143. rapidtide/tests/test_nullcorr.py +1 -1
  144. rapidtide/tests/test_padvec.py +1 -1
  145. rapidtide/tests/test_phaseanalysis.py +1 -1
  146. rapidtide/tests/test_rapidtideparser.py +1 -1
  147. rapidtide/tests/test_refinedelay.py +4 -3
  148. rapidtide/tests/test_runmisc.py +1 -1
  149. rapidtide/tests/test_sharedmem.py +1 -1
  150. rapidtide/tests/test_simulate.py +1 -1
  151. rapidtide/tests/test_stcorrelate.py +1 -1
  152. rapidtide/tests/test_timeshift.py +1 -1
  153. rapidtide/tests/test_valtoindex.py +1 -1
  154. rapidtide/tests/test_zRapidtideDataset.py +1 -1
  155. rapidtide/tests/utils.py +1 -1
  156. rapidtide/transformerdlfilter.py +2 -4
  157. rapidtide/util.py +37 -14
  158. rapidtide/voxelData.py +278 -0
  159. rapidtide/wiener.py +1 -1
  160. rapidtide/wiener2.py +1 -1
  161. rapidtide/workflows/adjustoffset.py +1 -1
  162. rapidtide/workflows/aligntcs.py +1 -1
  163. rapidtide/workflows/applydlfilter.py +20 -65
  164. rapidtide/workflows/atlasaverage.py +41 -13
  165. rapidtide/workflows/atlastool.py +1 -1
  166. rapidtide/workflows/calctexticc.py +1 -1
  167. rapidtide/workflows/ccorrica.py +1 -1
  168. rapidtide/workflows/cleanregressor.py +243 -0
  169. rapidtide/workflows/delayestimation.py +488 -0
  170. rapidtide/workflows/delayvar.py +122 -34
  171. rapidtide/workflows/diffrois.py +1 -1
  172. rapidtide/workflows/endtidalproc.py +1 -1
  173. rapidtide/workflows/fdica.py +1 -1
  174. rapidtide/workflows/filtnifti.py +1 -1
  175. rapidtide/workflows/filttc.py +1 -1
  176. rapidtide/workflows/fixtr.py +1 -1
  177. rapidtide/workflows/gmscalc.py +1 -1
  178. rapidtide/workflows/happy.py +49 -3
  179. rapidtide/workflows/happy2std.py +1 -1
  180. rapidtide/workflows/happy_parser.py +30 -6
  181. rapidtide/workflows/histnifti.py +1 -1
  182. rapidtide/workflows/histtc.py +1 -1
  183. rapidtide/workflows/linfitfilt.py +1 -1
  184. rapidtide/workflows/localflow.py +1 -1
  185. rapidtide/workflows/mergequality.py +1 -1
  186. rapidtide/workflows/niftidecomp.py +1 -1
  187. rapidtide/workflows/niftistats.py +1 -1
  188. rapidtide/workflows/pairproc.py +1 -1
  189. rapidtide/workflows/pairwisemergenifti.py +1 -1
  190. rapidtide/workflows/parser_funcs.py +1 -1
  191. rapidtide/workflows/physiofreq.py +1 -1
  192. rapidtide/workflows/pixelcomp.py +1 -1
  193. rapidtide/workflows/plethquality.py +1 -1
  194. rapidtide/workflows/polyfitim.py +1 -1
  195. rapidtide/workflows/proj2flow.py +1 -1
  196. rapidtide/workflows/rankimage.py +1 -1
  197. rapidtide/workflows/rapidtide.py +174 -686
  198. rapidtide/workflows/rapidtide2std.py +1 -1
  199. rapidtide/workflows/rapidtide_parser.py +14 -113
  200. rapidtide/workflows/regressfrommaps.py +6 -48
  201. rapidtide/workflows/resamplenifti.py +1 -1
  202. rapidtide/workflows/resampletc.py +1 -1
  203. rapidtide/workflows/retrolagtcs.py +2 -1
  204. rapidtide/workflows/retroregress.py +26 -2
  205. rapidtide/workflows/roisummarize.py +1 -1
  206. rapidtide/workflows/runqualitycheck.py +1 -1
  207. rapidtide/workflows/showarbcorr.py +1 -1
  208. rapidtide/workflows/showhist.py +1 -1
  209. rapidtide/workflows/showstxcorr.py +1 -1
  210. rapidtide/workflows/showtc.py +1 -1
  211. rapidtide/workflows/showxcorrx.py +1 -1
  212. rapidtide/workflows/showxy.py +1 -1
  213. rapidtide/workflows/simdata.py +1 -1
  214. rapidtide/workflows/spatialfit.py +1 -1
  215. rapidtide/workflows/spatialmi.py +1 -1
  216. rapidtide/workflows/spectrogram.py +1 -1
  217. rapidtide/workflows/synthASL.py +1 -1
  218. rapidtide/workflows/tcfrom2col.py +1 -1
  219. rapidtide/workflows/tcfrom3col.py +1 -1
  220. rapidtide/workflows/tidepool.py +2 -1
  221. rapidtide/workflows/utils.py +1 -1
  222. rapidtide/workflows/variabilityizer.py +1 -1
  223. {rapidtide-3.0a13.dist-info → rapidtide-3.0a15.dist-info}/METADATA +1 -1
  224. rapidtide-3.0a15.dist-info/RECORD +353 -0
  225. {rapidtide-3.0a13.dist-info → rapidtide-3.0a15.dist-info}/WHEEL +1 -1
  226. rapidtide/data/models/model_revised/model.h5 +0 -0
  227. rapidtide/data/models/model_serdar/model.h5 +0 -0
  228. rapidtide/data/models/model_serdar2/model.h5 +0 -0
  229. rapidtide-3.0a13.dist-info/RECORD +0 -345
  230. {rapidtide-3.0a13.dist-info → rapidtide-3.0a15.dist-info}/entry_points.txt +0 -0
  231. {rapidtide-3.0a13.dist-info → rapidtide-3.0a15.dist-info}/licenses/LICENSE +0 -0
  232. {rapidtide-3.0a13.dist-info → rapidtide-3.0a15.dist-info}/top_level.txt +0 -0
rapidtide/scripts/localflow.py CHANGED
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rapidtide/scripts/mergequality.py CHANGED
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rapidtide/scripts/pairproc.py CHANGED
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rapidtide/scripts/pairwisemergenifti.py CHANGED
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rapidtide/scripts/physiofreq.py CHANGED
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rapidtide/scripts/pixelcomp.py CHANGED
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rapidtide/scripts/plethquality.py CHANGED
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rapidtide/scripts/polyfitim.py CHANGED
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rapidtide/scripts/proj2flow.py CHANGED
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rapidtide/scripts/rankimage.py CHANGED
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rapidtide/scripts/rapidtide.py CHANGED
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rapidtide/scripts/rapidtide2std.py CHANGED
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rapidtide/scripts/resamplenifti.py CHANGED
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rapidtide/scripts/resampletc.py CHANGED
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rapidtide/scripts/retrolagtcs.py CHANGED
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rapidtide/scripts/retroregress.py CHANGED
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rapidtide/scripts/roisummarize.py CHANGED
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rapidtide/scripts/runqualitycheck.py CHANGED
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7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/showarbcorr.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/showhist.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/showstxcorr.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/showtc.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/showxcorr_legacy.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/showxcorrx.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/showxy.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/simdata.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/spatialdecomp.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/spatialfit.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/spatialmi.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/spectrogram.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/stupidramtricks.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/synthASL.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/tcfrom2col.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/tcfrom3col.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/temporaldecomp.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/testhrv.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/threeD.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/tidepool.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/scripts/variabilityizer.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/simfuncfit.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/stats.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
@@ -47,13 +47,6 @@ MAXLINES = 10000000
47
47
  donotbeaggressive = True
48
48
 
49
49
  # ----------------------------------------- Conditional imports ---------------------------------------
50
- try:
51
- from memory_profiler import profile
52
-
53
- memprofilerexists = True
54
- except ImportError:
55
- memprofilerexists = False
56
-
57
50
  try:
58
51
  from numba import jit
59
52
  except ImportError:
rapidtide/tests/cleanposttest CHANGED
@@ -17,5 +17,5 @@
17
17
  #
18
18
 
19
19
  rm tmp/*
20
- rm testdata/*
20
+ #rm testdata/*
21
21
  rm .coveragerc.*
rapidtide/tests/resethappytargets CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: latin-1 -*-
3
3
  #
4
- # Copyright 2016-2021 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/resetrapidtidetargets CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: latin-1 -*-
3
3
  #
4
- # Copyright 2016-2021 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/resettargets CHANGED
@@ -1,6 +1,6 @@
1
1
  #!/bin/csh -f
2
2
  #
3
- # Copyright 2016-2021 Blaise Frederick
3
+ # Copyright 2016-2025 Blaise Frederick
4
4
  #
5
5
  # Licensed under the Apache License, Version 2.0 (the "License");
6
6
  # you may not use this file except in compliance with the License.
rapidtide/tests/runlocaltest CHANGED
@@ -1,6 +1,6 @@
1
1
  #!/bin/sh
2
2
  #
3
- # Copyright 2016-2021 Blaise Frederick
3
+ # Copyright 2016-2025 Blaise Frederick
4
4
  #
5
5
  # Licensed under the Apache License, Version 2.0 (the "License");
6
6
  # you may not use this file except in compliance with the License.
rapidtide/tests/showkernels CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: latin-1 -*-
3
3
  #
4
- # Copyright 2016-2021 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/test_aliasedcorrelate.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/test_aligntcs.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/test_calcicc.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/test_congrid.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/test_correlate.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/test_corrpass.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/test_delayestimation.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/test_doresample.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/test_fastresampler.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/test_findmaxlag.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/tests/test_fullrunhappy_v1.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
@@ -25,21 +25,29 @@ import rapidtide.workflows.happy_parser as happy_parser
25
25
  from rapidtide.tests.utils import create_dir, get_examples_path, get_test_temp_path, mse
26
26
 
27
27
 
28
- def test_fullrunhappy_v1(debug=False, displayplots=False):
28
+ def test_fullrunhappy_v1(debug=False, local=False, displayplots=False):
29
+ # set input and output directories
30
+ if local:
31
+ exampleroot = "../data/examples/src"
32
+ testtemproot = "./tmp"
33
+ else:
34
+ exampleroot = get_examples_path()
35
+ testtemproot = get_test_temp_path()
36
+
29
37
  # run happy
30
38
  inputargs = [
31
- os.path.join(get_examples_path(), "sub-HAPPYTEST.nii.gz"),
32
- os.path.join(get_examples_path(), "sub-HAPPYTEST.json"),
33
- os.path.join(get_test_temp_path(), "happyout1"),
39
+ os.path.join(exampleroot, "sub-HAPPYTEST.nii.gz"),
40
+ os.path.join(exampleroot, "sub-HAPPYTEST.json"),
41
+ os.path.join(testtemproot, "happyout1"),
34
42
  "--mklthreads",
35
43
  "-1",
36
44
  "--spatialregression",
37
45
  "--model",
38
- "model_revised",
46
+ "model_revised_tf2",
39
47
  ]
40
48
  happy_workflow.happy_main(happy_parser.process_args(inputargs=inputargs))
41
49
 
42
50
 
43
51
  if __name__ == "__main__":
44
52
  mpl.use("TkAgg")
45
- test_fullrunhappy_v1(debug=True, displayplots=True)
53
+ test_fullrunhappy_v1(debug=True, local=True, displayplots=True)