rapidtide 3.0a13__py3-none-any.whl → 3.0a15__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (232) hide show
  1. rapidtide/Colortables.py +1 -1
  2. rapidtide/DerivativeDelay.py +4 -2
  3. rapidtide/OrthoImageItem.py +1 -1
  4. rapidtide/RapidtideDataset.py +3 -1
  5. rapidtide/RegressorRefiner.py +1 -1
  6. rapidtide/calcandfitcorrpairs.py +1 -1
  7. rapidtide/calccoherence.py +1 -1
  8. rapidtide/calcnullsimfunc.py +1 -1
  9. rapidtide/calcsimfunc.py +1 -1
  10. rapidtide/correlate.py +1 -1
  11. rapidtide/data/examples/src/test_findmaxlag.py +1 -1
  12. rapidtide/data/examples/src/testdelayvar +2 -1
  13. rapidtide/data/examples/src/testfmri +3 -2
  14. rapidtide/data/examples/src/testfuncs +1 -1
  15. rapidtide/data/examples/src/testhappy +12 -1
  16. rapidtide/data/examples/src/testmodels +33 -0
  17. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.png +0 -0
  18. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.txt +1 -0
  19. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/model.keras +0 -0
  20. rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/model_meta.json +167 -0
  21. rapidtide/data/models/model_revised_tf2/model.keras +0 -0
  22. rapidtide/data/models/{model_serdar → model_revised_tf2}/model_meta.json +1 -1
  23. rapidtide/data/models/model_serdar2_tf2/model.keras +0 -0
  24. rapidtide/data/models/{model_serdar2 → model_serdar2_tf2}/model_meta.json +1 -1
  25. rapidtide/data/models/model_serdar_tf2/model.keras +0 -0
  26. rapidtide/data/models/{model_revised → model_serdar_tf2}/model_meta.json +1 -1
  27. rapidtide/dlfilter.py +325 -241
  28. rapidtide/externaltools.py +1 -1
  29. rapidtide/fMRIData_class.py +1 -1
  30. rapidtide/filter.py +1 -8
  31. rapidtide/fit.py +1 -8
  32. rapidtide/happy_supportfuncs.py +30 -1
  33. rapidtide/helper_classes.py +1 -1
  34. rapidtide/io.py +1 -1
  35. rapidtide/linfitfiltpass.py +3 -1
  36. rapidtide/makelaggedtcs.py +9 -6
  37. rapidtide/maskutil.py +1 -1
  38. rapidtide/miscmath.py +1 -8
  39. rapidtide/multiproc.py +9 -12
  40. rapidtide/patchmatch.py +1 -1
  41. rapidtide/peakeval.py +1 -1
  42. rapidtide/qualitycheck.py +1 -1
  43. rapidtide/refinedelay.py +174 -89
  44. rapidtide/refineregressor.py +1 -1
  45. rapidtide/resample.py +1 -1
  46. rapidtide/scripts/adjustoffset.py +1 -1
  47. rapidtide/scripts/aligntcs.py +1 -1
  48. rapidtide/scripts/applydlfilter.py +1 -1
  49. rapidtide/scripts/atlasaverage.py +1 -1
  50. rapidtide/scripts/atlastool.py +1 -1
  51. rapidtide/scripts/calcicc.py +1 -1
  52. rapidtide/scripts/calctexticc.py +1 -1
  53. rapidtide/scripts/calcttest.py +1 -1
  54. rapidtide/scripts/ccorrica.py +1 -1
  55. rapidtide/scripts/delayvar.py +2 -2
  56. rapidtide/scripts/diffrois.py +1 -1
  57. rapidtide/scripts/endtidalproc.py +1 -1
  58. rapidtide/scripts/fdica.py +1 -1
  59. rapidtide/scripts/filtnifti.py +1 -1
  60. rapidtide/scripts/filttc.py +1 -1
  61. rapidtide/scripts/fingerprint.py +1 -1
  62. rapidtide/scripts/fixtr.py +1 -1
  63. rapidtide/scripts/gmscalc.py +1 -1
  64. rapidtide/scripts/happy.py +1 -1
  65. rapidtide/scripts/happy2std.py +1 -1
  66. rapidtide/scripts/happywarp.py +1 -1
  67. rapidtide/scripts/histnifti.py +1 -1
  68. rapidtide/scripts/histtc.py +1 -1
  69. rapidtide/scripts/linfitfilt.py +1 -1
  70. rapidtide/scripts/localflow.py +1 -1
  71. rapidtide/scripts/mergequality.py +1 -1
  72. rapidtide/scripts/pairproc.py +1 -1
  73. rapidtide/scripts/pairwisemergenifti.py +1 -1
  74. rapidtide/scripts/physiofreq.py +1 -1
  75. rapidtide/scripts/pixelcomp.py +1 -1
  76. rapidtide/scripts/plethquality.py +1 -1
  77. rapidtide/scripts/polyfitim.py +1 -1
  78. rapidtide/scripts/proj2flow.py +1 -1
  79. rapidtide/scripts/rankimage.py +1 -1
  80. rapidtide/scripts/rapidtide.py +1 -1
  81. rapidtide/scripts/rapidtide2std.py +1 -1
  82. rapidtide/scripts/resamplenifti.py +1 -1
  83. rapidtide/scripts/resampletc.py +1 -1
  84. rapidtide/scripts/retrolagtcs.py +1 -1
  85. rapidtide/scripts/retroregress.py +1 -1
  86. rapidtide/scripts/roisummarize.py +1 -1
  87. rapidtide/scripts/runqualitycheck.py +1 -1
  88. rapidtide/scripts/showarbcorr.py +1 -1
  89. rapidtide/scripts/showhist.py +1 -1
  90. rapidtide/scripts/showstxcorr.py +1 -1
  91. rapidtide/scripts/showtc.py +1 -1
  92. rapidtide/scripts/showxcorr_legacy.py +1 -1
  93. rapidtide/scripts/showxcorrx.py +1 -1
  94. rapidtide/scripts/showxy.py +1 -1
  95. rapidtide/scripts/simdata.py +1 -1
  96. rapidtide/scripts/spatialdecomp.py +1 -1
  97. rapidtide/scripts/spatialfit.py +1 -1
  98. rapidtide/scripts/spatialmi.py +1 -1
  99. rapidtide/scripts/spectrogram.py +1 -1
  100. rapidtide/scripts/stupidramtricks.py +1 -1
  101. rapidtide/scripts/synthASL.py +1 -1
  102. rapidtide/scripts/tcfrom2col.py +1 -1
  103. rapidtide/scripts/tcfrom3col.py +1 -1
  104. rapidtide/scripts/temporaldecomp.py +1 -1
  105. rapidtide/scripts/testhrv.py +1 -1
  106. rapidtide/scripts/threeD.py +1 -1
  107. rapidtide/scripts/tidepool.py +1 -1
  108. rapidtide/scripts/variabilityizer.py +1 -1
  109. rapidtide/simfuncfit.py +1 -1
  110. rapidtide/stats.py +1 -8
  111. rapidtide/tests/cleanposttest +1 -1
  112. rapidtide/tests/resethappytargets +1 -1
  113. rapidtide/tests/resetrapidtidetargets +1 -1
  114. rapidtide/tests/resettargets +1 -1
  115. rapidtide/tests/runlocaltest +1 -1
  116. rapidtide/tests/showkernels +1 -1
  117. rapidtide/tests/test_aliasedcorrelate.py +1 -1
  118. rapidtide/tests/test_aligntcs.py +1 -1
  119. rapidtide/tests/test_calcicc.py +1 -1
  120. rapidtide/tests/test_congrid.py +1 -1
  121. rapidtide/tests/test_correlate.py +1 -1
  122. rapidtide/tests/test_corrpass.py +1 -1
  123. rapidtide/tests/test_delayestimation.py +1 -1
  124. rapidtide/tests/test_doresample.py +1 -1
  125. rapidtide/tests/test_fastresampler.py +1 -1
  126. rapidtide/tests/test_findmaxlag.py +1 -1
  127. rapidtide/tests/test_fullrunhappy_v1.py +15 -7
  128. rapidtide/tests/test_fullrunhappy_v2.py +18 -10
  129. rapidtide/tests/test_fullrunhappy_v3.py +18 -10
  130. rapidtide/tests/test_fullrunhappy_v4.py +18 -10
  131. rapidtide/tests/test_fullrunhappy_v5.py +15 -9
  132. rapidtide/tests/test_fullrunrapidtide_v1.py +19 -11
  133. rapidtide/tests/test_fullrunrapidtide_v2.py +24 -14
  134. rapidtide/tests/test_fullrunrapidtide_v3.py +15 -7
  135. rapidtide/tests/test_fullrunrapidtide_v4.py +15 -8
  136. rapidtide/tests/test_fullrunrapidtide_v5.py +13 -5
  137. rapidtide/tests/test_fullrunrapidtide_v6.py +24 -16
  138. rapidtide/tests/test_io.py +1 -1
  139. rapidtide/tests/test_linfitfiltpass.py +1 -1
  140. rapidtide/tests/test_mi.py +1 -1
  141. rapidtide/tests/test_miscmath.py +1 -1
  142. rapidtide/tests/test_motionregress.py +1 -1
  143. rapidtide/tests/test_nullcorr.py +1 -1
  144. rapidtide/tests/test_padvec.py +1 -1
  145. rapidtide/tests/test_phaseanalysis.py +1 -1
  146. rapidtide/tests/test_rapidtideparser.py +1 -1
  147. rapidtide/tests/test_refinedelay.py +4 -3
  148. rapidtide/tests/test_runmisc.py +1 -1
  149. rapidtide/tests/test_sharedmem.py +1 -1
  150. rapidtide/tests/test_simulate.py +1 -1
  151. rapidtide/tests/test_stcorrelate.py +1 -1
  152. rapidtide/tests/test_timeshift.py +1 -1
  153. rapidtide/tests/test_valtoindex.py +1 -1
  154. rapidtide/tests/test_zRapidtideDataset.py +1 -1
  155. rapidtide/tests/utils.py +1 -1
  156. rapidtide/transformerdlfilter.py +2 -4
  157. rapidtide/util.py +37 -14
  158. rapidtide/voxelData.py +278 -0
  159. rapidtide/wiener.py +1 -1
  160. rapidtide/wiener2.py +1 -1
  161. rapidtide/workflows/adjustoffset.py +1 -1
  162. rapidtide/workflows/aligntcs.py +1 -1
  163. rapidtide/workflows/applydlfilter.py +20 -65
  164. rapidtide/workflows/atlasaverage.py +41 -13
  165. rapidtide/workflows/atlastool.py +1 -1
  166. rapidtide/workflows/calctexticc.py +1 -1
  167. rapidtide/workflows/ccorrica.py +1 -1
  168. rapidtide/workflows/cleanregressor.py +243 -0
  169. rapidtide/workflows/delayestimation.py +488 -0
  170. rapidtide/workflows/delayvar.py +122 -34
  171. rapidtide/workflows/diffrois.py +1 -1
  172. rapidtide/workflows/endtidalproc.py +1 -1
  173. rapidtide/workflows/fdica.py +1 -1
  174. rapidtide/workflows/filtnifti.py +1 -1
  175. rapidtide/workflows/filttc.py +1 -1
  176. rapidtide/workflows/fixtr.py +1 -1
  177. rapidtide/workflows/gmscalc.py +1 -1
  178. rapidtide/workflows/happy.py +49 -3
  179. rapidtide/workflows/happy2std.py +1 -1
  180. rapidtide/workflows/happy_parser.py +30 -6
  181. rapidtide/workflows/histnifti.py +1 -1
  182. rapidtide/workflows/histtc.py +1 -1
  183. rapidtide/workflows/linfitfilt.py +1 -1
  184. rapidtide/workflows/localflow.py +1 -1
  185. rapidtide/workflows/mergequality.py +1 -1
  186. rapidtide/workflows/niftidecomp.py +1 -1
  187. rapidtide/workflows/niftistats.py +1 -1
  188. rapidtide/workflows/pairproc.py +1 -1
  189. rapidtide/workflows/pairwisemergenifti.py +1 -1
  190. rapidtide/workflows/parser_funcs.py +1 -1
  191. rapidtide/workflows/physiofreq.py +1 -1
  192. rapidtide/workflows/pixelcomp.py +1 -1
  193. rapidtide/workflows/plethquality.py +1 -1
  194. rapidtide/workflows/polyfitim.py +1 -1
  195. rapidtide/workflows/proj2flow.py +1 -1
  196. rapidtide/workflows/rankimage.py +1 -1
  197. rapidtide/workflows/rapidtide.py +174 -686
  198. rapidtide/workflows/rapidtide2std.py +1 -1
  199. rapidtide/workflows/rapidtide_parser.py +14 -113
  200. rapidtide/workflows/regressfrommaps.py +6 -48
  201. rapidtide/workflows/resamplenifti.py +1 -1
  202. rapidtide/workflows/resampletc.py +1 -1
  203. rapidtide/workflows/retrolagtcs.py +2 -1
  204. rapidtide/workflows/retroregress.py +26 -2
  205. rapidtide/workflows/roisummarize.py +1 -1
  206. rapidtide/workflows/runqualitycheck.py +1 -1
  207. rapidtide/workflows/showarbcorr.py +1 -1
  208. rapidtide/workflows/showhist.py +1 -1
  209. rapidtide/workflows/showstxcorr.py +1 -1
  210. rapidtide/workflows/showtc.py +1 -1
  211. rapidtide/workflows/showxcorrx.py +1 -1
  212. rapidtide/workflows/showxy.py +1 -1
  213. rapidtide/workflows/simdata.py +1 -1
  214. rapidtide/workflows/spatialfit.py +1 -1
  215. rapidtide/workflows/spatialmi.py +1 -1
  216. rapidtide/workflows/spectrogram.py +1 -1
  217. rapidtide/workflows/synthASL.py +1 -1
  218. rapidtide/workflows/tcfrom2col.py +1 -1
  219. rapidtide/workflows/tcfrom3col.py +1 -1
  220. rapidtide/workflows/tidepool.py +2 -1
  221. rapidtide/workflows/utils.py +1 -1
  222. rapidtide/workflows/variabilityizer.py +1 -1
  223. {rapidtide-3.0a13.dist-info → rapidtide-3.0a15.dist-info}/METADATA +1 -1
  224. rapidtide-3.0a15.dist-info/RECORD +353 -0
  225. {rapidtide-3.0a13.dist-info → rapidtide-3.0a15.dist-info}/WHEEL +1 -1
  226. rapidtide/data/models/model_revised/model.h5 +0 -0
  227. rapidtide/data/models/model_serdar/model.h5 +0 -0
  228. rapidtide/data/models/model_serdar2/model.h5 +0 -0
  229. rapidtide-3.0a13.dist-info/RECORD +0 -345
  230. {rapidtide-3.0a13.dist-info → rapidtide-3.0a15.dist-info}/entry_points.txt +0 -0
  231. {rapidtide-3.0a13.dist-info → rapidtide-3.0a15.dist-info}/licenses/LICENSE +0 -0
  232. {rapidtide-3.0a13.dist-info → rapidtide-3.0a15.dist-info}/top_level.txt +0 -0
rapidtide/workflows/niftidecomp.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/workflows/niftistats.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/workflows/pairproc.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/workflows/pairwisemergenifti.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/workflows/parser_funcs.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2018-2024 Blaise Frederick
4
+ # Copyright 2018-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/workflows/physiofreq.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2020-2024 Blaise Frederick
4
+ # Copyright 2020-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/workflows/pixelcomp.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/workflows/plethquality.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/workflows/polyfitim.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/workflows/proj2flow.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.
rapidtide/workflows/rankimage.py CHANGED
@@ -1,7 +1,7 @@
1
1
  #!/usr/bin/env python
2
2
  # -*- coding: utf-8 -*-
3
3
  #
4
- # Copyright 2016-2024 Blaise Frederick
4
+ # Copyright 2016-2025 Blaise Frederick
5
5
  #
6
6
  # Licensed under the Apache License, Version 2.0 (the "License");
7
7
  # you may not use this file except in compliance with the License.