rapidtide 3.0a12__py3-none-any.whl → 3.0a14__py3-none-any.whl

rapidtide/tests/{test_glmpass.py → test_linfitfiltpass.py}

@@ -20,7 +20,7 @@ import matplotlib as mpl
 import matplotlib.pyplot as plt
 import numpy as np
 
-import rapidtide.glmpass as tide_glmpass
+import rapidtide.linfitfiltpass as tide_linfitfiltpass
 from rapidtide.tests.utils import mse
 
 
@@ -41,7 +41,7 @@ def gen2d(xsize=150, xcycles=11, tsize=200, tcycles=13, mean=10.0):
     return thearray, xwaves, twaves
 
 
-def test_glmpass(debug=True, displayplots=False):
+def test_linfitfiltpass(debug=True, displayplots=False):
     np.random.seed(12345)
     xsize = 150
     xcycles = 7
@@ -77,8 +77,8 @@ def test_glmpass(debug=True, displayplots=False):
     fitcoffs_x = np.zeros((xsize, tsize), dtype=np.float64)
     fitNorm_x = np.zeros((xsize, tsize), dtype=np.float64)
 
-    for confoundglm in [True, False]:
-        if confoundglm:
+    for confoundregress in [True, False]:
+        if confoundregress:
             twaveformrange = np.transpose(twaveforms[:6, :])
             xwaveformrange = xwaveforms[:, :6]
             print(f"{twaveformrange.shape=} - {xwaveformrange.shape=}")
@@ -115,9 +115,9 @@ def test_glmpass(debug=True, displayplots=False):
 
                     if debug:
                         print(
-                            f"confoundglm={confoundglm}, proc by {direction}, {procstring} proc, {maskstatus}"
+                            f"confoundregress={confoundregress}, proc by {direction}, {procstring} proc, {maskstatus}"
                         )
-                    tide_glmpass.glmpass(
+                    tide_linfitfiltpass.linfitfiltpass(
                         xsize,
                         testarray,
                         thisthreshval,
@@ -132,7 +132,7 @@ def test_glmpass(debug=True, displayplots=False):
                         showprogressbar=False,
                         procbyvoxel=procbyvoxel,
                         nprocs=nprocs,
-                        confoundglm=confoundglm,
+                        confoundregress=confoundregress,
                     )
                     if displayplots:
                         plt.figure()
@@ -142,10 +142,10 @@ def test_glmpass(debug=True, displayplots=False):
                         plt.show()
                     if debug:
                         print(f"\tMSE: {mse(datatoremove, targetarray)}\n")
-                    if not confoundglm:
+                    if not confoundregress:
                         assert mse(datatoremove, targetarray) < 1e-3
 
 
 if __name__ == "__main__":
     mpl.use("TkAgg")
-    test_glmpass(debug=True, displayplots=True)
+    test_linfitfiltpass(debug=True, displayplots=True)

rapidtide/tests/test_motionregress.py

@@ -21,8 +21,8 @@ import matplotlib.pyplot as plt
 import numpy as np
 
 import rapidtide.fit as tide_fit
-import rapidtide.glmpass as tide_glmpass
 import rapidtide.io as tide_io
+import rapidtide.linfitfiltpass as tide_linfitfiltpass
 from rapidtide.tests.utils import mse
 
 
@@ -132,7 +132,7 @@ def test_motionregress(debug=False, displayplots=False):
                 numprocitems = thedataarray.shape[0]
                 filtereddata = thedataarray * 0.0
                 r2value = np.zeros(numprocitems)
-                dummy = tide_glmpass.glmpass(
+                dummy = tide_linfitfiltpass.linfitfiltpass(
                     numprocitems,
                     thedataarray,
                     None,
@@ -144,7 +144,7 @@ def test_motionregress(debug=False, displayplots=False):
                     None,
                     None,
                     filtereddata,
-                    confoundglm=True,
+                    confoundregress=True,
                     nprocs=1,
                     showprogressbar=debug,
                     procbyvoxel=True,

rapidtide/tests/test_refinedelay.py

@@ -80,7 +80,7 @@ def eval_refinedelay(
     padtime = sampletime * numpadtrs
     lagtcgenerator = tide_resample.FastResampler(timeaxis, sLFO, padtime=padtime)
 
-    # find the mapping of glm ratios to delays
+    # find the mapping of derivative ratios to delays
     tide_refinedelay.trainratiotooffset(
         lagtcgenerator,
         timeaxis,
@@ -135,7 +135,7 @@ def eval_refinedelay(
 
     rt_floattype = "float64"
     rt_floatset = np.float64
-    glmmean = np.zeros(numlags, dtype=rt_floattype)
+    sLFOfitmean = np.zeros(numlags, dtype=rt_floattype)
     rvalue = np.zeros(numlags, dtype=rt_floattype)
     r2value = np.zeros(numlags, dtype=rt_floattype)
     fitNorm = np.zeros((numlags, 2), dtype=rt_floattype)
@@ -144,10 +144,10 @@ def eval_refinedelay(
     lagtc = np.zeros(internalvalidfmrishape, dtype=rt_floattype)
     filtereddata = np.zeros(internalvalidfmrishape, dtype=rt_floattype)
     optiondict = {
-        "glmthreshval": 0.0,
-        "saveminimumglmfiles": False,
+        "regressfiltthreshval": 0.0,
+        "saveminimumsLFOfiltfiles": False,
         "nprocs_makelaggedtcs": 1,
-        "nprocs_glm": 1,
+        "nprocs_regressionfilt": 1,
         "mp_chunksize": 1000,
         "showprogressbar": False,
         "alwaysmultiproc": False,
@@ -157,7 +157,7 @@ def eval_refinedelay(
         "textio": False,
     }
 
-    glmderivratios = tide_refinedelay.getderivratios(
+    regressderivratios, regressrvalues = tide_refinedelay.getderivratios(
         fmridata,
         validvoxels,
         timeaxis,
@@ -167,7 +167,7 @@ def eval_refinedelay(
         "glm",
         "refinedelaytest",
         sampletime,
-        glmmean,
+        sLFOfitmean,
         rvalue,
         r2value,
         fitNorm[:, :2],
@@ -181,8 +181,8 @@ def eval_refinedelay(
         debug=debug,
     )
 
-    medfilt, filteredglmderivratios, themad = tide_refinedelay.filterderivratios(
-        glmderivratios,
+    medfilt, filteredregressderivratios, themad = tide_refinedelay.filterderivratios(
+        regressderivratios,
         nativespaceshape,
         validvoxels,
         (xdim, ydim, slicedim),
@@ -193,9 +193,11 @@ def eval_refinedelay(
         debug=debug,
     )
 
-    delayoffset = filteredglmderivratios * 0.0
-    for i in range(filteredglmderivratios.shape[0]):
-        delayoffset[i] = tide_refinedelay.ratiotodelay(filteredglmderivratios[i])
+    delayoffset = filteredregressderivratios * 0.0
+    for i in range(filteredregressderivratios.shape[0]):
+        delayoffset[i], closestoffset = tide_refinedelay.ratiotodelay(
+            filteredregressderivratios[i]
+        )
 
     # do the tests
     msethresh = 0.1

rapidtide/tidepoolTemplate_alt_qt6.py

@@ -13,7 +13,10 @@ class Ui_MainWindow(object):
     def setupUi(self, MainWindow):
         MainWindow.setObjectName("MainWindow")
         MainWindow.resize(1375, 805)
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.MinimumExpanding, QtWidgets.QSizePolicy.Policy.MinimumExpanding)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.MinimumExpanding,
+            QtWidgets.QSizePolicy.Policy.MinimumExpanding,
+        )
         sizePolicy.setHorizontalStretch(1)
         sizePolicy.setVerticalStretch(1)
         sizePolicy.setHeightForWidth(MainWindow.sizePolicy().hasHeightForWidth())
@@ -25,7 +28,9 @@ class Ui_MainWindow(object):
         self.centralwidget.setObjectName("centralwidget")
         self.imageData_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
         self.imageData_groupBox.setGeometry(QtCore.QRect(220, 5, 561, 591))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.MinimumExpanding, QtWidgets.QSizePolicy.Policy.Maximum)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.MinimumExpanding, QtWidgets.QSizePolicy.Policy.Maximum
+        )
         sizePolicy.setHorizontalStretch(1)
         sizePolicy.setVerticalStretch(1)
         sizePolicy.setHeightForWidth(self.imageData_groupBox.sizePolicy().hasHeightForWidth())
@@ -48,7 +53,11 @@ class Ui_MainWindow(object):
         self.verticalLayout_3.setSpacing(0)
         self.verticalLayout_3.setObjectName("verticalLayout_3")
         self.dispmax_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.imageData_groupBox)
-        self.dispmax_doubleSpinBox.setAlignment(QtCore.Qt.AlignmentFlag.AlignRight|QtCore.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.AlignmentFlag.AlignVCenter)
+        self.dispmax_doubleSpinBox.setAlignment(
+            QtCore.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.AlignmentFlag.AlignVCenter
+        )
         self.dispmax_doubleSpinBox.setDecimals(3)
         self.dispmax_doubleSpinBox.setObjectName("dispmax_doubleSpinBox")
         self.verticalLayout_3.addWidget(self.dispmax_doubleSpinBox)
@@ -65,7 +74,11 @@ class Ui_MainWindow(object):
         self.setMask_Button.setObjectName("setMask_Button")
         self.verticalLayout_3.addWidget(self.setMask_Button)
         self.dispmin_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.imageData_groupBox)
-        self.dispmin_doubleSpinBox.setAlignment(QtCore.Qt.AlignmentFlag.AlignRight|QtCore.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.AlignmentFlag.AlignVCenter)
+        self.dispmin_doubleSpinBox.setAlignment(
+            QtCore.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.AlignmentFlag.AlignVCenter
+        )
         self.dispmin_doubleSpinBox.setDecimals(3)
         self.dispmin_doubleSpinBox.setObjectName("dispmin_doubleSpinBox")
         self.verticalLayout_3.addWidget(self.dispmin_doubleSpinBox)
@@ -75,7 +88,9 @@ class Ui_MainWindow(object):
         self.verticalLayout_3.addWidget(self.transparency_checkBox)
         self.gridLayout_2.addLayout(self.verticalLayout_3, 0, 1, 1, 1)
         self.graphicsView_colorbar = GraphicsView(parent=self.imageData_groupBox)
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Minimum, QtWidgets.QSizePolicy.Policy.Minimum)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Minimum, QtWidgets.QSizePolicy.Policy.Minimum
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.graphicsView_colorbar.sizePolicy().hasHeightForWidth())
@@ -83,11 +98,15 @@ class Ui_MainWindow(object):
         self.graphicsView_colorbar.setMinimumSize(QtCore.QSize(25, 128))
         self.graphicsView_colorbar.setMaximumSize(QtCore.QSize(25, 256))
         self.graphicsView_colorbar.setSizeIncrement(QtCore.QSize(0, 1))
-        self.graphicsView_colorbar.setResizeAnchor(QtWidgets.QGraphicsView.ViewportAnchor.AnchorViewCenter)
+        self.graphicsView_colorbar.setResizeAnchor(
+            QtWidgets.QGraphicsView.ViewportAnchor.AnchorViewCenter
+        )
         self.graphicsView_colorbar.setObjectName("graphicsView_colorbar")
         self.gridLayout_2.addWidget(self.graphicsView_colorbar, 0, 0, 1, 1)
         self.aspects_verticalLayout = QtWidgets.QVBoxLayout()
-        self.aspects_verticalLayout.setSizeConstraint(QtWidgets.QLayout.SizeConstraint.SetMinimumSize)
+        self.aspects_verticalLayout.setSizeConstraint(
+            QtWidgets.QLayout.SizeConstraint.SetMinimumSize
+        )
         self.aspects_verticalLayout.setSpacing(0)
         self.aspects_verticalLayout.setObjectName("aspects_verticalLayout")
         self.verticalLayout_4 = QtWidgets.QVBoxLayout()
@@ -212,7 +231,10 @@ class Ui_MainWindow(object):
         self.gridLayout_2.addLayout(self.aspects_verticalLayout, 0, 2, 1, 1)
         self.gridLayout.addLayout(self.gridLayout_2, 2, 2, 1, 1)
         self.main_graphicsView_cor = GraphicsLayoutWidget(parent=self.imageData_groupBox)
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.MinimumExpanding, QtWidgets.QSizePolicy.Policy.MinimumExpanding)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.MinimumExpanding,
+            QtWidgets.QSizePolicy.Policy.MinimumExpanding,
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.main_graphicsView_cor.sizePolicy().hasHeightForWidth())
@@ -225,7 +247,10 @@ class Ui_MainWindow(object):
         self.main_graphicsView_cor.setObjectName("main_graphicsView_cor")
         self.gridLayout.addWidget(self.main_graphicsView_cor, 1, 2, 1, 1)
         self.main_graphicsView_sag = GraphicsLayoutWidget(parent=self.imageData_groupBox)
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.MinimumExpanding, QtWidgets.QSizePolicy.Policy.MinimumExpanding)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.MinimumExpanding,
+            QtWidgets.QSizePolicy.Policy.MinimumExpanding,
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.main_graphicsView_sag.sizePolicy().hasHeightForWidth())
@@ -238,7 +263,10 @@ class Ui_MainWindow(object):
         self.main_graphicsView_sag.setObjectName("main_graphicsView_sag")
         self.gridLayout.addWidget(self.main_graphicsView_sag, 2, 1, 1, 1)
         self.main_graphicsView_ax = GraphicsLayoutWidget(parent=self.imageData_groupBox)
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.MinimumExpanding, QtWidgets.QSizePolicy.Policy.MinimumExpanding)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.MinimumExpanding,
+            QtWidgets.QSizePolicy.Policy.MinimumExpanding,
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.main_graphicsView_ax.sizePolicy().hasHeightForWidth())
@@ -248,12 +276,16 @@ class Ui_MainWindow(object):
         self.main_graphicsView_ax.setSizeIncrement(QtCore.QSize(1, 1))
         self.main_graphicsView_ax.setFrameShape(QtWidgets.QFrame.Shape.NoFrame)
         self.main_graphicsView_ax.setAlignment(QtCore.Qt.AlignmentFlag.AlignCenter)
-        self.main_graphicsView_ax.setViewportUpdateMode(QtWidgets.QGraphicsView.ViewportUpdateMode.SmartViewportUpdate)
+        self.main_graphicsView_ax.setViewportUpdateMode(
+            QtWidgets.QGraphicsView.ViewportUpdateMode.SmartViewportUpdate
+        )
         self.main_graphicsView_ax.setObjectName("main_graphicsView_ax")
         self.gridLayout.addWidget(self.main_graphicsView_ax, 1, 1, 1, 1)
         self.overlays_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
         self.overlays_groupBox.setGeometry(QtCore.QRect(0, 5, 211, 591))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Minimum, QtWidgets.QSizePolicy.Policy.Preferred)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Minimum, QtWidgets.QSizePolicy.Policy.Preferred
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.overlays_groupBox.sizePolicy().hasHeightForWidth())
@@ -274,7 +306,9 @@ class Ui_MainWindow(object):
         self.overlay_radioButton_05.setObjectName("overlay_radioButton_05")
         self.overlay_graphicsView_01 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
         self.overlay_graphicsView_01.setGeometry(QtCore.QRect(10, 25, 192, 64))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.overlay_graphicsView_01.sizePolicy().hasHeightForWidth())
@@ -351,7 +385,9 @@ class Ui_MainWindow(object):
         self.overlay_radioButton_08.setObjectName("overlay_radioButton_08")
         self.overlay_graphicsView_04 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
         self.overlay_graphicsView_04.setGeometry(QtCore.QRect(10, 235, 192, 64))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.overlay_graphicsView_04.sizePolicy().hasHeightForWidth())
@@ -363,7 +399,9 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_04.setObjectName("overlay_graphicsView_04")
         self.overlay_graphicsView_06 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
         self.overlay_graphicsView_06.setGeometry(QtCore.QRect(10, 375, 192, 64))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.overlay_graphicsView_06.sizePolicy().hasHeightForWidth())
@@ -375,7 +413,9 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_06.setObjectName("overlay_graphicsView_06")
         self.overlay_graphicsView_03 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
         self.overlay_graphicsView_03.setGeometry(QtCore.QRect(10, 165, 192, 64))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.overlay_graphicsView_03.sizePolicy().hasHeightForWidth())
@@ -387,7 +427,9 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_03.setObjectName("overlay_graphicsView_03")
         self.overlay_graphicsView_08 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
         self.overlay_graphicsView_08.setGeometry(QtCore.QRect(10, 515, 192, 64))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.overlay_graphicsView_08.sizePolicy().hasHeightForWidth())
@@ -399,7 +441,9 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_08.setObjectName("overlay_graphicsView_08")
         self.overlay_graphicsView_05 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
         self.overlay_graphicsView_05.setGeometry(QtCore.QRect(10, 305, 192, 64))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.overlay_graphicsView_05.sizePolicy().hasHeightForWidth())
@@ -411,7 +455,9 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_05.setObjectName("overlay_graphicsView_05")
         self.overlay_graphicsView_02 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
         self.overlay_graphicsView_02.setGeometry(QtCore.QRect(10, 95, 192, 64))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.overlay_graphicsView_02.sizePolicy().hasHeightForWidth())
@@ -423,7 +469,9 @@ class Ui_MainWindow(object):
         self.overlay_graphicsView_02.setObjectName("overlay_graphicsView_02")
         self.overlay_graphicsView_07 = GraphicsLayoutWidget(parent=self.overlays_groupBox)
         self.overlay_graphicsView_07.setGeometry(QtCore.QRect(10, 445, 192, 64))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.overlay_graphicsView_07.sizePolicy().hasHeightForWidth())
@@ -452,7 +500,9 @@ class Ui_MainWindow(object):
         self.corrout_radioButton.raise_()
         self.histogram_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
         self.histogram_groupBox.setGeometry(QtCore.QRect(790, 223, 571, 186))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.Expanding)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.Expanding
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.histogram_groupBox.sizePolicy().hasHeightForWidth())
@@ -465,7 +515,9 @@ class Ui_MainWindow(object):
         self.histogram_groupBox.setObjectName("histogram_groupBox")
         self.histogram_graphicsView = GraphicsLayoutWidget(parent=self.histogram_groupBox)
         self.histogram_graphicsView.setGeometry(QtCore.QRect(10, 25, 551, 151))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.MinimumExpanding)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.MinimumExpanding
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.histogram_graphicsView.sizePolicy().hasHeightForWidth())
@@ -484,7 +536,11 @@ class Ui_MainWindow(object):
         self.label_4.setObjectName("label_4")
         self.pixnumX_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
         self.pixnumX_doubleSpinBox.setGeometry(QtCore.QRect(30, 30, 67, 24))
-        self.pixnumX_doubleSpinBox.setAlignment(QtCore.Qt.AlignmentFlag.AlignRight|QtCore.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.AlignmentFlag.AlignVCenter)
+        self.pixnumX_doubleSpinBox.setAlignment(
+            QtCore.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.AlignmentFlag.AlignVCenter
+        )
         self.pixnumX_doubleSpinBox.setDecimals(0)
         self.pixnumX_doubleSpinBox.setObjectName("pixnumX_doubleSpinBox")
         self.label_7 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
@@ -495,7 +551,11 @@ class Ui_MainWindow(object):
         self.label_7.setObjectName("label_7")
         self.coordX_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
         self.coordX_doubleSpinBox.setGeometry(QtCore.QRect(100, 30, 67, 24))
-        self.coordX_doubleSpinBox.setAlignment(QtCore.Qt.AlignmentFlag.AlignRight|QtCore.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.AlignmentFlag.AlignVCenter)
+        self.coordX_doubleSpinBox.setAlignment(
+            QtCore.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.AlignmentFlag.AlignVCenter
+        )
         self.coordX_doubleSpinBox.setDecimals(3)
         self.coordX_doubleSpinBox.setObjectName("coordX_doubleSpinBox")
         self.label_9 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
@@ -506,22 +566,38 @@ class Ui_MainWindow(object):
         self.label_9.setObjectName("label_9")
         self.pixnumY_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
         self.pixnumY_doubleSpinBox.setGeometry(QtCore.QRect(30, 55, 67, 24))
-        self.pixnumY_doubleSpinBox.setAlignment(QtCore.Qt.AlignmentFlag.AlignRight|QtCore.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.AlignmentFlag.AlignVCenter)
+        self.pixnumY_doubleSpinBox.setAlignment(
+            QtCore.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.AlignmentFlag.AlignVCenter
+        )
         self.pixnumY_doubleSpinBox.setDecimals(0)
         self.pixnumY_doubleSpinBox.setObjectName("pixnumY_doubleSpinBox")
         self.coordY_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
         self.coordY_doubleSpinBox.setGeometry(QtCore.QRect(100, 55, 67, 24))
-        self.coordY_doubleSpinBox.setAlignment(QtCore.Qt.AlignmentFlag.AlignRight|QtCore.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.AlignmentFlag.AlignVCenter)
+        self.coordY_doubleSpinBox.setAlignment(
+            QtCore.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.AlignmentFlag.AlignVCenter
+        )
         self.coordY_doubleSpinBox.setDecimals(3)
         self.coordY_doubleSpinBox.setObjectName("coordY_doubleSpinBox")
         self.pixnumZ_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
         self.pixnumZ_doubleSpinBox.setGeometry(QtCore.QRect(30, 80, 67, 24))
-        self.pixnumZ_doubleSpinBox.setAlignment(QtCore.Qt.AlignmentFlag.AlignRight|QtCore.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.AlignmentFlag.AlignVCenter)
+        self.pixnumZ_doubleSpinBox.setAlignment(
+            QtCore.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.AlignmentFlag.AlignVCenter
+        )
         self.pixnumZ_doubleSpinBox.setDecimals(0)
         self.pixnumZ_doubleSpinBox.setObjectName("pixnumZ_doubleSpinBox")
         self.coordZ_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
         self.coordZ_doubleSpinBox.setGeometry(QtCore.QRect(100, 80, 67, 24))
-        self.coordZ_doubleSpinBox.setAlignment(QtCore.Qt.AlignmentFlag.AlignRight|QtCore.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.AlignmentFlag.AlignVCenter)
+        self.coordZ_doubleSpinBox.setAlignment(
+            QtCore.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.AlignmentFlag.AlignVCenter
+        )
         self.coordZ_doubleSpinBox.setDecimals(3)
         self.coordZ_doubleSpinBox.setObjectName("coordZ_doubleSpinBox")
         self.label_6 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
@@ -532,12 +608,20 @@ class Ui_MainWindow(object):
         self.label_8.setObjectName("label_8")
         self.coordT_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
         self.coordT_doubleSpinBox.setGeometry(QtCore.QRect(100, 130, 67, 24))
-        self.coordT_doubleSpinBox.setAlignment(QtCore.Qt.AlignmentFlag.AlignRight|QtCore.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.AlignmentFlag.AlignVCenter)
+        self.coordT_doubleSpinBox.setAlignment(
+            QtCore.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.AlignmentFlag.AlignVCenter
+        )
         self.coordT_doubleSpinBox.setDecimals(3)
         self.coordT_doubleSpinBox.setObjectName("coordT_doubleSpinBox")
         self.pixnumT_doubleSpinBox = QtWidgets.QDoubleSpinBox(parent=self.mainimagedata_groupBox)
         self.pixnumT_doubleSpinBox.setGeometry(QtCore.QRect(30, 130, 67, 24))
-        self.pixnumT_doubleSpinBox.setAlignment(QtCore.Qt.AlignmentFlag.AlignRight|QtCore.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.AlignmentFlag.AlignVCenter)
+        self.pixnumT_doubleSpinBox.setAlignment(
+            QtCore.Qt.AlignmentFlag.AlignRight
+            | QtCore.Qt.AlignmentFlag.AlignTrailing
+            | QtCore.Qt.AlignmentFlag.AlignVCenter
+        )
         self.pixnumT_doubleSpinBox.setDecimals(0)
         self.pixnumT_doubleSpinBox.setObjectName("pixnumT_doubleSpinBox")
         self.label_3 = QtWidgets.QLabel(parent=self.mainimagedata_groupBox)
@@ -564,7 +648,9 @@ class Ui_MainWindow(object):
         self.runMovieButton.setObjectName("runMovieButton")
         self.regressor_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
         self.regressor_groupBox.setGeometry(QtCore.QRect(0, 590, 1361, 181))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.Expanding)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.Expanding
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.regressor_groupBox.sizePolicy().hasHeightForWidth())
@@ -577,22 +663,32 @@ class Ui_MainWindow(object):
         self.regressor_groupBox.setObjectName("regressor_groupBox")
         self.regressorspectrum_graphicsView = GraphicsLayoutWidget(parent=self.regressor_groupBox)
         self.regressorspectrum_graphicsView.setGeometry(QtCore.QRect(630, 23, 610, 131))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
-        sizePolicy.setHeightForWidth(self.regressorspectrum_graphicsView.sizePolicy().hasHeightForWidth())
+        sizePolicy.setHeightForWidth(
+            self.regressorspectrum_graphicsView.sizePolicy().hasHeightForWidth()
+        )
         self.regressorspectrum_graphicsView.setSizePolicy(sizePolicy)
         self.regressorspectrum_graphicsView.setMinimumSize(QtCore.QSize(610, 100))
         self.regressorspectrum_graphicsView.setMaximumSize(QtCore.QSize(610, 1000))
         self.regressorspectrum_graphicsView.setSizeIncrement(QtCore.QSize(1, 1))
         self.regressorspectrum_graphicsView.setObjectName("regressorspectrum_graphicsView")
-        self.regressortimecourse_graphicsView = GraphicsLayoutWidget(parent=self.regressor_groupBox)
+        self.regressortimecourse_graphicsView = GraphicsLayoutWidget(
+            parent=self.regressor_groupBox
+        )
         self.regressortimecourse_graphicsView.setEnabled(True)
         self.regressortimecourse_graphicsView.setGeometry(QtCore.QRect(10, 23, 610, 131))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Preferred, QtWidgets.QSizePolicy.Policy.Preferred
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
-        sizePolicy.setHeightForWidth(self.regressortimecourse_graphicsView.sizePolicy().hasHeightForWidth())
+        sizePolicy.setHeightForWidth(
+            self.regressortimecourse_graphicsView.sizePolicy().hasHeightForWidth()
+        )
         self.regressortimecourse_graphicsView.setSizePolicy(sizePolicy)
         self.regressortimecourse_graphicsView.setMinimumSize(QtCore.QSize(610, 100))
         self.regressortimecourse_graphicsView.setMaximumSize(QtCore.QSize(610, 1000))
@@ -648,7 +744,9 @@ class Ui_MainWindow(object):
         self.pass4_radioButton.setFont(font)
         self.pass4_radioButton.setObjectName("pass4_radioButton")
         self.verticalLayout.addWidget(self.pass4_radioButton)
-        spacerItem = QtWidgets.QSpacerItem(20, 40, QtWidgets.QSizePolicy.Policy.Minimum, QtWidgets.QSizePolicy.Policy.Expanding)
+        spacerItem = QtWidgets.QSpacerItem(
+            20, 40, QtWidgets.QSizePolicy.Policy.Minimum, QtWidgets.QSizePolicy.Policy.Expanding
+        )
         self.verticalLayout.addItem(spacerItem)
         self.label_5 = QtWidgets.QLabel(parent=self.regressor_groupBox)
         self.label_5.setGeometry(QtCore.QRect(200, 155, 161, 16))
@@ -666,7 +764,9 @@ class Ui_MainWindow(object):
         self.label_12.setObjectName("label_12")
         self.logOutput_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
         self.logOutput_groupBox.setGeometry(QtCore.QRect(980, 5, 381, 221))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.Expanding)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.Expanding
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.logOutput_groupBox.sizePolicy().hasHeightForWidth())
@@ -687,7 +787,9 @@ class Ui_MainWindow(object):
         self.logOutput.setObjectName("logOutput")
         self.simfunc_groupBox = QtWidgets.QGroupBox(parent=self.centralwidget)
         self.simfunc_groupBox.setGeometry(QtCore.QRect(790, 405, 571, 186))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.Expanding)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.Expanding
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.simfunc_groupBox.sizePolicy().hasHeightForWidth())
@@ -700,7 +802,9 @@ class Ui_MainWindow(object):
         self.simfunc_groupBox.setObjectName("simfunc_groupBox")
         self.simfunc_graphicsView = GraphicsLayoutWidget(parent=self.simfunc_groupBox)
         self.simfunc_graphicsView.setGeometry(QtCore.QRect(10, 25, 551, 151))
-        sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.MinimumExpanding)
+        sizePolicy = QtWidgets.QSizePolicy(
+            QtWidgets.QSizePolicy.Policy.Expanding, QtWidgets.QSizePolicy.Policy.MinimumExpanding
+        )
         sizePolicy.setHorizontalStretch(0)
         sizePolicy.setVerticalStretch(0)
         sizePolicy.setHeightForWidth(self.simfunc_graphicsView.sizePolicy().hasHeightForWidth())
@@ -733,15 +837,36 @@ class Ui_MainWindow(object):
         _translate = QtCore.QCoreApplication.translate
         MainWindow.setWindowTitle(_translate("MainWindow", "MainWindow"))
         self.imageData_groupBox.setTitle(_translate("MainWindow", "Image Data"))
-        self.resetDispLimits_Button.setToolTip(_translate("MainWindow", "Set the display range of the current map to the absolute minimum and maximum"))
+        self.resetDispLimits_Button.setToolTip(
+            _translate(
+                "MainWindow",
+                "Set the display range of the current map to the absolute minimum and maximum",
+            )
+        )
         self.resetDispLimits_Button.setText(_translate("MainWindow", "Full Range"))
-        self.resetDispSmart_Button.setToolTip(_translate("MainWindow", "Set the display range of the current map to the robust minimum and maximum"))
+        self.resetDispSmart_Button.setToolTip(
+            _translate(
+                "MainWindow",
+                "Set the display range of the current map to the robust minimum and maximum",
+            )
+        )
         self.resetDispSmart_Button.setText(_translate("MainWindow", "Smart"))
-        self.saveDisp_Button.setToolTip(_translate("MainWindow", "Save jpegs of the currently displayed map"))
+        self.saveDisp_Button.setToolTip(
+            _translate("MainWindow", "Save jpegs of the currently displayed map")
+        )
         self.saveDisp_Button.setText(_translate("MainWindow", "Save"))
-        self.setMask_Button.setToolTip(_translate("MainWindow", "Right click to select the mask used to display the current map"))
+        self.setMask_Button.setToolTip(
+            _translate(
+                "MainWindow", "Right click to select the mask used to display the current map"
+            )
+        )
         self.setMask_Button.setText(_translate("MainWindow", "No mask"))
-        self.transparency_checkBox.setToolTip(_translate("MainWindow", "With transparency on, map values outside the range limits are not displayed."))
+        self.transparency_checkBox.setToolTip(
+            _translate(
+                "MainWindow",
+                "With transparency on, map values outside the range limits are not displayed.",
+            )
+        )
         self.transparency_checkBox.setText(_translate("MainWindow", "Transparency"))
         self.label_2.setText(_translate("MainWindow", "Colormap"))
         self.gray_radioButton.setText(_translate("MainWindow", "Gray"))
@@ -791,4 +916,6 @@ class Ui_MainWindow(object):
         self.logOutput_groupBox.setTitle(_translate("MainWindow", "Information"))
         self.simfunc_groupBox.setTitle(_translate("MainWindow", "Correlation Function"))
         self.actionQuit.setText(_translate("MainWindow", "Quit"))
+
+
 from pyqtgraph import GraphicsLayoutWidget, GraphicsView