rapidtide 3.0.5__py3-none-any.whl → 3.0.7__py3-none-any.whl

{rapidtide-3.0.5.dist-info → rapidtide-3.0.7.dist-info}/RECORD

@@ -7,36 +7,35 @@ cloud/rapidtide-HCPYA,sha256=kqW8ENbOQhvVqZGz-HqiVbrbzHy4cfyy1rk8ejpJor0,963
 cloud/rapidtide-cloud-test,sha256=SATOwGo4QYLvt-6hE0e3wyK9JjuDU5XzfLrfMoybvcY,466
 cloud/simple-cp-test,sha256=5ef8wmLfcKdny59BV6_DnAPj7O_mi0rOHdFZVN2iiLA,421
 rapidtide/Colortables.py,sha256=OVtgnQ9xTJPgfdyK1ktESHRjBh09cxLVPZvgUvV5jOo,5814
-rapidtide/DerivativeDelay.py,sha256=B3ElHcaAvxH3qB0n6l4rIX5FXsRHp_PE_H3ky-5XdoQ,7107
 rapidtide/OrthoImageItem.py,sha256=w70QNZUelMI7wTWYaqOfkJEb38PdsxgSf0NLdyjlcNs,21669
-rapidtide/RapidtideDataset.py,sha256=sccBQf8T9zvOMSHHXG7pwEm-sUyzbyZ4i0rFuWMwj3A,52343
+rapidtide/RapidtideDataset.py,sha256=mHK6dL1cFSSM5jYw6rkzb57lWVVz-TGX-xMeV8IqF-M,53013
 rapidtide/RegressorRefiner.py,sha256=dPG9Vy2nlqxv2Mx9vrYtgYTsNGcVIwWknawDrNdpZxQ,17232
 rapidtide/__init__.py,sha256=cECnPfGNIWXETiummGLjKcNXLROSDiFlLp-RpZSavwc,97
-rapidtide/_version.py,sha256=3OU9TRfkXZJGKZEHjxydZN1ypyAIfk88M2iVvYOHK_0,497
-rapidtide/calcandfitcorrpairs.py,sha256=dlKxjKSlgCF9AF_dRoPeIGc9dz1DIluYfKLQzTSQsd0,7397
-rapidtide/calccoherence.py,sha256=VayovUVA5X-eWmjJG0GNxI_Giw7vRjTDFvWcV6NVfq0,4512
-rapidtide/calcnullsimfunc.py,sha256=92q7Yw8VeSjA9UfcD-hHN9MgoaUcoKuR9VGBmt_n45M,7150
-rapidtide/calcsimfunc.py,sha256=1HQUaIGLhk1-CnWPMeOjbWoiVJrcSLTxgpwF2VhS3Sg,5310
-rapidtide/correlate.py,sha256=za2lqbYZZGpIHoMC8VOrLH8cP8B3pG2Mh8VFaZf-4aE,36800
+rapidtide/_version.py,sha256=HDQ6uc9dBVVhrf7M2MUpG-xKl7d0UA0eisj2QL7_Kd4,497
+rapidtide/calccoherence.py,sha256=-_vglu0MZB85Aodw6GpYhBApFBt5eslppfxF4rXM6Xg,3409
+rapidtide/calcnullsimfunc.py,sha256=34osvoQ_tWk3VeFk7g3TYsmpPVRMIkEX31KYvx5Ox_A,5032
+rapidtide/calcsimfunc.py,sha256=xCPYns-XOnLWjwujbP7a7EwGEzhEwOHMf04RpFlL3SI,4713
+rapidtide/correlate.py,sha256=cKfJR35A0tnbx56aGfaXTgnYsHxWUR3o2bUVi7MSo7E,37147
 rapidtide/dlfilter.py,sha256=sJ1UoekNFlGVJOIeN6BKP_-pU-MOHD5Gc4GT7FTB2So,58161
 rapidtide/externaltools.py,sha256=-p2GZRRpI2_7eRY8N6lnG4DBQKoRd_WZZQzvgFCicUY,3965
 rapidtide/fMRIData_class.py,sha256=qVPp8xUw98cUJm4zsO5UUXrgBWz-UhJhwHLrzjBNxow,5102
 rapidtide/filter.py,sha256=GySR0UdlrfNzWs9HOdvsIGlfHKThT9KdamNk0Y0JHeU,71647
 rapidtide/fit.py,sha256=whveHKtqC-cPWxclCf86-5iBAtXOdXL2G1yg082q6R8,67955
-rapidtide/happy_supportfuncs.py,sha256=NlcZdD7wXQ65xYaB_t035PeSBC-FxbTy6x4B272q5x0,41968
+rapidtide/genericmultiproc.py,sha256=ZQwN84HpC7ZA_w4qekBqA4suU_70ryqGjAsTAIa4oSw,3423
+rapidtide/happy_supportfuncs.py,sha256=kGL2fJkL9HU4-V71eyMaRBwx3RONPmy02rKxBF7k6os,56261
 rapidtide/helper_classes.py,sha256=2m2zcFUgE12JhYL0HQJEafJ1pFa0Zsb46Lpi9iw3Qbg,51470
 rapidtide/io.py,sha256=A3qFJdFFf1XSVlqPvoOF733OoxrRcbRO-gSEoh_95bE,75037
-rapidtide/linfitfiltpass.py,sha256=fR8vQQrH8yfXyaMNNsELA7xCv_Ro7qpZSXX_PbIFtx0,16142
-rapidtide/makelaggedtcs.py,sha256=XC0-tTKfcV4qQeoOlF3PiAdbvMuDZetrifsmWc0wQTw,3998
+rapidtide/linfitfiltpass.py,sha256=ps7IGbKcpO33kLW0gK2O0OBddDs3PoC-0zhs9gWAe9M,16303
+rapidtide/makelaggedtcs.py,sha256=KZ63G6rjfeDO17Fpfla37rRPusd3JfavP60LESUKK0Y,2827
 rapidtide/maskutil.py,sha256=IBEgxmHvQ2fnBoTeFu7vw_w3uf91NxpW3IgTDirhWH0,10890
 rapidtide/miscmath.py,sha256=bEmqnBl6xL2ZRXbId7onXqiEayZJW-jWVCEIp0bfw3o,13918
-rapidtide/multiproc.py,sha256=9nkcTqlgFVFqS9V32YSO3C8fmEtTTd__tSLW1J6UENU,6068
+rapidtide/multiproc.py,sha256=K5IO0mr-T4rZbL4j7Zp7vFTv-6icavh-dgITZmzP8Ds,5817
 rapidtide/patchmatch.py,sha256=VxXine2b_fI0oMJWuhXUzfHhZH_-BdqyvW2Ft2n-Vu0,20643
 rapidtide/peakeval.py,sha256=ZDcuAT4Bw9bTU1oJTvOn9t_rWEZOsXHC5PiNnDdFlX0,5198
 rapidtide/qualitycheck.py,sha256=exTRCQDf9OsNbmlemr-5YPjDGDg3uSTyc8amidXUZqU,11917
 rapidtide/refinedelay.py,sha256=abOji4e2k7DpQR7jxgGh6nJ2IE4ZxQp5S5DNKfLZwP8,16323
-rapidtide/refineregressor.py,sha256=4EgQF8en1EB0kGGtWW2go_Ek-MTG1icGicf82R6vAPo,22950
-rapidtide/resample.py,sha256=0IX6Ais7Fxuz9HfrSpNGkKF7w3xKWm_fTs6yA7X43hk,30592
+rapidtide/refineregressor.py,sha256=w9RP2SDjC769FmUq_CQ5ZUtr5-7kfzhvlzlBvKs8cXg,21831
+rapidtide/resample.py,sha256=UYK3QCgNltOdgXKMEbqsFVjQEVD-Ar1lodLvdUQH4_o,30751
 rapidtide/simfuncfit.py,sha256=QfBJxkn4lzNX4HIx2CbvWUV55C2WZmfwwm69RqNtlSE,11837
 rapidtide/stats.py,sha256=vA79EazdcpQHJJFC0tjKBc37Ij_KfSeKcSPOjuWCHuM,29230
 rapidtide/tidepoolTemplate.py,sha256=YK6vXIXfgAq5OHa67RjvL0MhMJIIgjmDpxQY16Cwnl4,46252
@@ -48,9 +47,8 @@ rapidtide/tidepoolTemplate_big.py,sha256=60RdSehVFi2V38G_8ByhGILfCGf4g6lSnKV42Hd
 rapidtide/tidepoolTemplate_big.ui,sha256=lJYAJHJA8iJYJTlnq5GllkW-VMRrpLhDL4kskwU14Xw,65552
 rapidtide/tidepoolTemplate_big_qt6.py,sha256=yXmFpoO5exhbXHtjKVE7AG-oi7tB6QOCFW5RRO0z6Ls,67499
 rapidtide/tidepoolTemplate_qt6.py,sha256=qBgufkyHsmEZ_HPgAu8LLbztlwlyfm6KcRfJ9qVFbXc,48198
-rapidtide/transformerdlfilter.py,sha256=pd9F7qd9mBNeK7QlrIXPkaDIlmThDBSAnDB340nRybI,4549
 rapidtide/util.py,sha256=2Q991FzjiSgn5qHErVgAV7bya3ylNDdhctE-3X7ImH4,36487
-rapidtide/voxelData.py,sha256=f-LXAPPSRvwJ9nFOZncayLMfS7XuIjFNW7TWoWWS96U,13328
+rapidtide/voxelData.py,sha256=En0SJuG2gykXrmEcFs1n0BxpzTNH5wikiPUUr97RcAA,14015
 rapidtide/wiener.py,sha256=UcRBIJZY5RYgpKFwlvppXDsXRIX_MJgPB37S9nvC4lU,4128
 rapidtide/wiener2.py,sha256=IF913hQ4naCjLYGXCspNsA-YCCb0WvjjueDl6UoWvLo,3746
 rapidtide/data/examples/src/installtestdata,sha256=ummRjxxmArheODnzRHwb6DL9Sxhay6ulJpETEMVy-fs,205
@@ -59,7 +57,7 @@ rapidtide/data/examples/src/test_io,sha256=tDhxo2Gtzq5rED84hDg3JzmbGm8FGJQ05tA2y
 rapidtide/data/examples/src/test_mlregressallt.py,sha256=dDSoovevThiwvVb9YyME8WCBFLgObec5nWNYJRNhVmQ,2016
 rapidtide/data/examples/src/test_rapidtidecompare,sha256=I9bpbKxCd9vtHjFBn-PrawctFvfeBBH3_xMJ3Ohbv0k,217
 rapidtide/data/examples/src/testalign,sha256=GgLe7BORaUiDd16lRIlv7frn8xO1zBf75Md_Ii1n4Is,1565
-rapidtide/data/examples/src/testatlasaverage,sha256=ZmFNX1ENSMSD-H-h56-ZFw-VafNUUoUpBZKKzM1ZOes,974
+rapidtide/data/examples/src/testatlasaverage,sha256=vAK_YvjG1Kp72AZOjJnTGDb1G6D_sgyrI89T0GBBpyQ,1562
 rapidtide/data/examples/src/testboth,sha256=ITAqA3XOC9duFRoBtZgGL9pLnh7Po43i8qjUImSq_eo,455
 rapidtide/data/examples/src/testcifti,sha256=Nw4UMzkh1oFdW4FuAznuOR9hAr2KJuPF86gZnqqJylU,265
 rapidtide/data/examples/src/testcomplex,sha256=PFY_d30eqYBx5K8cPP_WxsP2YPlYuawo8u1hDhYT-_U,2271
@@ -67,12 +65,12 @@ rapidtide/data/examples/src/testdecomp,sha256=xxxr510aOBjtpJy4aQNAFTyEFZD6QdHp6-
 rapidtide/data/examples/src/testdelayvar,sha256=tMn1k8IfvBL7MKhgGC6EGcSkChtXWKp1bENOGG4SagI,330
 rapidtide/data/examples/src/testfileorfloat,sha256=9r4mz7pBV_8iFZya9kmtfbnTRS3-94Cx9Q63Ni3mkZs,815
 rapidtide/data/examples/src/testfingerprint,sha256=RlAIC1lMDWMGzZKxY24DJRuaUEL0BenSFBey0gL5dqU,402
-rapidtide/data/examples/src/testfmri,sha256=s-zTyUQhG6LnRdI9xOg92QaA0pckuu1hU3WMkOfK51A,474
+rapidtide/data/examples/src/testfmri,sha256=FatnYBPAPCIC6MVWwfhs7bJkQnkB-DlNXIkb28-8Asw,972
 rapidtide/data/examples/src/testfmridocker,sha256=jjL7bK29rrcog6uO9BtvcyAU3Sv8_5cbw2nqKoiZ95o,1193
 rapidtide/data/examples/src/testfrozen,sha256=K3qUWDRKPPiCXRgIFuPdwUUjUTzf4QBW8UUhR75NzDM,283
 rapidtide/data/examples/src/testfuncs,sha256=zjq9u7mXMf0UlbUgePyS1mj7QHclicmw6NY0g31SqeY,1551
 rapidtide/data/examples/src/testglmfilt,sha256=MuZlVBJIV7FrTWFLKGuWBcpR9WiZEjCGeD6cAnJLeNI,3357
-rapidtide/data/examples/src/testhappy,sha256=6qSO4MiQOC8TPsCI__zUZpBfy5ZoZOQgu3LcYj68eig,1944
+rapidtide/data/examples/src/testhappy,sha256=FOBQWO8vdgkZKt_yzzB0Q4mvg7oScXaknPVCb2imGAw,1557
 rapidtide/data/examples/src/testinitdelay,sha256=ts_r5WZBLJDQ3UfPmJ9sfXlO0arO9dhGCQ_Y1wYvjMk,559
 rapidtide/data/examples/src/testlinfit,sha256=oPnkHJ6lcwsuJhnSMMK7Gx3DHSCf6JK7CIYuIMHbyNA,471
 rapidtide/data/examples/src/testlocalflow,sha256=hEwstisbWVuALr_29fBJ2nHETKkEF_9qK8wJ4kzuiJk,596
@@ -84,7 +82,7 @@ rapidtide/data/examples/src/testpad,sha256=O4bgGWNTMjaitT_yT7UXRKwOl5UFS9nnXjcQT
 rapidtide/data/examples/src/testrefineonly,sha256=PyYGqga3b25hgbscX1wrIqvyYDHJ8udD60c5tDPHFTs,595
 rapidtide/data/examples/src/testretro,sha256=y0aDcFr1XGiSe6Tg_gy4e5Fip9aOe2GUSEhNvl7mvo0,2855
 rapidtide/data/examples/src/testretrolagtcs,sha256=IazwDDMSESx1ixF8hyoKYTJYsHwCzI-uIkSah9gkRoo,570
-rapidtide/data/examples/src/testsimdata,sha256=zqbuBMGMGvwnqfXcmPJoKksC0D4LoykP3s_JktoMyqI,1042
+rapidtide/data/examples/src/testsimdata,sha256=0tcCHaU5TO3FjI74qV1f98hp4OQSI4IhpujWBhg0R9Y,1509
 rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.png,sha256=LJ1aaEPx3m6MhioK3YN8QZYBhlI0lY0Wb2SAV2SQmYI,24123
 rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/loss.txt,sha256=anU71cFjmYpQvMcMZIPADHWKIfvGxTL6ZZgk6RDWZkg,138
 rapidtide/data/models/model_cnn_w064_l13_fn20_fl08/model.keras,sha256=0fyy1Pf1YBb0OubpaUu_I3fAZC8UHG1FOs9kAGJlbIU,298164
@@ -208,7 +206,7 @@ rapidtide/scripts/testhrv.py,sha256=-DSVILgiGdMy5XYyRwrRav__Yui3Y_SsViFWmc8A1DY,
 rapidtide/scripts/threeD.py,sha256=WzYo8SZ2bjiIs-vtNxPBc8aaIzW1NuP-Ab7Ppu8MM3g,7558
 rapidtide/scripts/tidepool.py,sha256=luBTs1wBHMtjFjGVlE55VRmwoRSFv0h-g0f9pUJCE7c,887
 rapidtide/scripts/variabilityizer.py,sha256=hcXl1vGk9TrUg9SM0GwH4E4NhTekvK3zVS0KDgx5-qw,901
-rapidtide/tests/.coveragerc,sha256=Vxvd-Hm-mJ925eYGq6F58bKnlHejuUDyNrVVg0jJ-6s,448
+rapidtide/tests/.coveragerc,sha256=r4vYVGn0lcVWKw_QrdMWLp9b1fT6Op19wF-yGYJDHAE,698
 rapidtide/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 rapidtide/tests/cleanposttest,sha256=VK_WiEMUSyQ2aIm4xnje5zmArZytp-L70Q5M2bXpNeM,648
 rapidtide/tests/matplotlibrc,sha256=I3-tgWriYYV3-ldCMuuvS7ejDVQ_jYNHTBkg5FQsc7k,1778
@@ -222,12 +220,13 @@ rapidtide/tests/test_aliasedcorrelate.py,sha256=3387A6Ngo3mbqIiUWxJhtppe6E3AplAC
 rapidtide/tests/test_aligntcs.py,sha256=PKkj8JGrHx-8Kpx5LQF5mwhWUFsMR-w2bkhWOREeHsY,1715
 rapidtide/tests/test_calcicc.py,sha256=T3f-9k4ah9JesGFHFEobvQ4BK0oXwXkjCW1cyGjOgfU,1387
 rapidtide/tests/test_cleanregressor.py,sha256=tkVOhJEOwcP_LDqV61qR6gORhAipZjKjeYiEXBjOy1k,6265
-rapidtide/tests/test_congrid.py,sha256=pzU6xtQy43QofLYP9KtQIiOyjZBnrXUhKbh4ha_UQV0,5584
+rapidtide/tests/test_congrid.py,sha256=sM0qLbT1vKU3YnMDEf99pESE8JCsqYxwggaR1T_2w0k,5610
 rapidtide/tests/test_correlate.py,sha256=SKqLbj0MDQ7wZ1N70j6x07_i-Jok9ySPdJMt8lJ7qq0,2547
 rapidtide/tests/test_corrpass.py,sha256=zoZ5odTxlZ3d_tEvSXOU0qyhbIzCdauoRy4MUkHehHc,7836
 rapidtide/tests/test_delayestimation.py,sha256=CGt-z1mRjKralIeXWqGOCP_8LHS9a0LfhSuRHgwAN-A,13506
 rapidtide/tests/test_doresample.py,sha256=9vwiMo8WutmOKW5LfeMRLG3FAzZNa_1sra-k-36Fn-w,2716
-rapidtide/tests/test_fastresampler.py,sha256=dQxcv3TTm62uYxwK2AJ3oNerww3W-CYf8WWYYt_MD4s,3861
+rapidtide/tests/test_externaltools.py,sha256=oaD9KQ1Db9fhev9g9OfUecoZLKeGHnmQV4-OGrk3rko,2121
+rapidtide/tests/test_fastresampler.py,sha256=x9jimD1aGYA48egjAUbjcCcxA7eXsAf2VPP3KbhBkvw,3884
 rapidtide/tests/test_filter.py,sha256=_xhk3rbYFtuKgrDdgrrrlITtmQhOUUi5EhFcnxVUioA,10891
 rapidtide/tests/test_findmaxlag.py,sha256=Ff81mZyx4mY78bVC_r-ZrvH6jinhVS64QjbivK7Mg50,11551
 rapidtide/tests/test_fullrunhappy_v1.py,sha256=oJ3uLI-WoKjKPlZi_5LdfB-iJc3Xk4JsOeiMliyXhB4,1708
@@ -236,7 +235,7 @@ rapidtide/tests/test_fullrunhappy_v3.py,sha256=Oy2UoFy4Tiye0fNuSsh9bF4PlclGHc6oG
 rapidtide/tests/test_fullrunhappy_v4.py,sha256=n3LylIDexTly06sk5TUnrQhfizkf98Mo4VEaw3uNkr4,1960
 rapidtide/tests/test_fullrunhappy_v5.py,sha256=BK240KjaJs9mHFgTmsDjCW3miBd4dDTn6qZxAYD3HTA,1896
 rapidtide/tests/test_fullrunrapidtide_v1.py,sha256=XhMjNG0EIyzGnGaI6Q_imSkjFDyScx1y-bwAWBlzC2w,3095
-rapidtide/tests/test_fullrunrapidtide_v2.py,sha256=KOuKoY5-Ryry7rlpIp-OzmCW2rYqGMIDa6JYqt57Tjk,3138
+rapidtide/tests/test_fullrunrapidtide_v2.py,sha256=srjNJOetoxuhSwYKb7RfejHa0jzPgXP_vtcb0RYe0Dc,3164
 rapidtide/tests/test_fullrunrapidtide_v3.py,sha256=i9RZCJ7ZieYnH0eIC38FuyN_uV9stDwuPuUoSVKJzXo,2889
 rapidtide/tests/test_fullrunrapidtide_v4.py,sha256=DTEom1FPHn21WZZveiCCf4L_NabR9BMzLNoAA8RuDv0,2118
 rapidtide/tests/test_fullrunrapidtide_v5.py,sha256=NzTYGXaWsJzd7uIIgom_NPwl3EmGCRxlylaUEVN3gxU,1779
@@ -248,9 +247,9 @@ rapidtide/tests/test_linfitfiltpass.py,sha256=Q_XbDujj4tGc3X_I37IJJBDsvAs0m-S_oU
 rapidtide/tests/test_mi.py,sha256=Yia_TE1VxQfT0cZFdwsw6pb2l5E3PmY89zhKSfKus3g,2272
 rapidtide/tests/test_miscmath.py,sha256=Kng7InnANKQeWPlY0ZwdIQnYT79U6sNH1w63pCx1aeE,3096
 rapidtide/tests/test_motionregress.py,sha256=HS8Ph4-5owWp8oK6bwdy1FelJxDA0FE045JUnitth-4,5588
-rapidtide/tests/test_nullcorr.py,sha256=cs39wIW8anDQMg13EtTQf_5kr7yT9SSSSve9_7QWm34,6446
+rapidtide/tests/test_nullcorr.py,sha256=Wkg5B_3ifOKs5PLPFYCNLf3W8Qh4etBguDbZ1XYhC44,6330
 rapidtide/tests/test_padvec.py,sha256=41Pnm5zJkWeOXbM0dngS7mRkGwJ4es4O5aiEQ8YJ3rs,6728
-rapidtide/tests/test_parserfuncs.py,sha256=moebtQVwiQ_g0XMmaiAY-wnO9rcSEby6V66PBrM42NY,2203
+rapidtide/tests/test_parserfuncs.py,sha256=zKY8rwsKRydfNqy-oceCQeL-41ezpG2lyluNQ0RMz-M,3087
 rapidtide/tests/test_phaseanalysis.py,sha256=6d9nuSsVLjHW1br2BXvJxVQMjFcbuUuYGNjt3t7-odk,2150
 rapidtide/tests/test_rapidtideparser.py,sha256=Dmf_48Kgw9UW2L5pr8bVT1j5rBx__veAdiaAmYpIYCQ,5555
 rapidtide/tests/test_refinedelay.py,sha256=PNDbnmyRvogCZGiq08MtCsPWWJtLB9zzLXk0fvjmYm8,8473
@@ -260,7 +259,7 @@ rapidtide/tests/test_simulate.py,sha256=9zLY3PxmLgXdQcDHX5B0INyhhB_KOjwpBZkIEDVc
 rapidtide/tests/test_stcorrelate.py,sha256=ExYA58MDvJt3qGZAbEHSg-aMKtIKAX_zTacxiA0mttE,2493
 rapidtide/tests/test_timeshift.py,sha256=J4aLZI0ZvnB-vJZEAqwrcsarGRfKkKSY7IToyuhlqcg,3045
 rapidtide/tests/test_valtoindex.py,sha256=z-_m8d4Zo5pMeH2-vOhFM62hD4M7zcNx8rMrFA78fTI,1179
-rapidtide/tests/test_zRapidtideDataset.py,sha256=kR0ILh_F7lmcBLaPYxLvjOyzUrUnwZF3iLyezLbgCsI,2230
+rapidtide/tests/test_zRapidtideDataset.py,sha256=ld9YQzgXyco8Nvx_ZTa9ow_xNLXIm_f2AMBQrQ5Ryf4,2255
 rapidtide/tests/usercustomize.py,sha256=iP8Vh35CixAbBD5He7gjQwmqYGItRGoNS_OD4sdDEe8,159
 rapidtide/tests/utils.py,sha256=qs3GlHZjfMXLgtdXfA-nIIoyWAKbpvTwxB_ZcyTvYnA,3254
 rapidtide/tests/testdata/100206_REST1_LR_cardfromfmri_25.0Hz.txt,sha256=w_ocCt0muJse-VZvqzPIBiveBo0Rp2sjoSP04Am0vgM,423304
@@ -293,8 +292,8 @@ rapidtide/workflows/applydlfilter.py,sha256=9dkVYitWSupZWWA1xNtLMf4-BgIwOjYLqDpO
 rapidtide/workflows/atlasaverage.py,sha256=6j5cNWk613R98LFmBAfVDJh6TuTo8Uxa-VW7nn0uNOA,17478
 rapidtide/workflows/atlastool.py,sha256=6aMMtr6knETNTyW-laThMeiO8mcdd71F8MSsdYHMeIM,16076
 rapidtide/workflows/calctexticc.py,sha256=9nGGAiqiD2MPg7UiIGR2V7rdtx-jcXQ_Q7uTXCziraQ,10486
-rapidtide/workflows/ccorrica.py,sha256=CX-WAkOXRx1y_RoIjavr9BeE5m2q1o7EntKoTAMRC-s,10504
-rapidtide/workflows/cleanregressor.py,sha256=O9YgBfgNYKgSBY5ZNs2M7W7q5tBC4yMJZ0a3gavrnbo,10261
+rapidtide/workflows/ccorrica.py,sha256=ZGuBoM4u860Q7WxbNp-yxTxBaHLNozL7Kbx3o3rvaFk,10457
+rapidtide/workflows/cleanregressor.py,sha256=HYm3T3fH6dzFcgFjlYpf5i0NGCtCK_D739quOLIzUyM,10293
 rapidtide/workflows/delayestimation.py,sha256=cC7d69JXn6vnumSfs9f7gNJuaKqQSzXEoxAi7Td-miM,17647
 rapidtide/workflows/delayvar.py,sha256=s4hOTtj3-jXGirLOlIFId-3QFzvQXJtMRifvcXLlDFQ,40697
 rapidtide/workflows/diffrois.py,sha256=imyKnnO8wnKbVoqsYEpYfJl0oBLllG9_pbV-0D1IdIw,5451
@@ -304,9 +303,9 @@ rapidtide/workflows/filtnifti.py,sha256=LXQw8yY7xbVCYAWNO5wsJOYHkxOH5I4x_oRaaXsP
 rapidtide/workflows/filttc.py,sha256=QHMJ41ZORxB8fG4IcvxKUgSfmOL4X9cFQFpM5px1Uxw,4514
 rapidtide/workflows/fixtr.py,sha256=KYr3veeHDUjozH3IO-0iPhLqNDGEc2NcUvzn6tuxeN8,2025
 rapidtide/workflows/gmscalc.py,sha256=Z-3HV2EU-HuIhpr7s5u4EAPAaW0gXtj2aVZt7386Gr8,6258
-rapidtide/workflows/happy.py,sha256=5C4_E3fQsI6a2s8JnTPkx9OgNSSniua9ceCaZp-Z4Uk,75137
+rapidtide/workflows/happy.py,sha256=8iDUnN3j2VoRIdA9G51xvfnT41k76HPuisv25QMxHz0,77220
 rapidtide/workflows/happy2std.py,sha256=6gya9YjfPzPMu15jsMUbu7pLq430-n3b3meiTWhRkAo,8132
-rapidtide/workflows/happy_parser.py,sha256=JXXJRas-fooU_KeZfqJ1l9NbmHYsola8NFb3gSQl9ew,26292
+rapidtide/workflows/happy_parser.py,sha256=OQTcUIvB61p0niNpG__9auUINb962PKmp0wz6qj_uN8,27354
 rapidtide/workflows/histnifti.py,sha256=BeABj0osc0mEnmyKonN0Hgeis8L8soO-w-cVaeMKLUI,11197
 rapidtide/workflows/histtc.py,sha256=ZiLLTshdpQBVHja1jEGFiaZ-YVxVhVtFeGv9w5R7HFc,4561
 rapidtide/workflows/linfitfilt.py,sha256=J6_qFZrfEf8Zf7-JA9EMaSXvyV_2ViNIqzju-ugjNGU,10007
@@ -323,23 +322,23 @@ rapidtide/workflows/plethquality.py,sha256=kTO74C5aSBmomzt59zs1VeiO_C5SPTxvyZZ0v
 rapidtide/workflows/polyfitim.py,sha256=bVKBrrFa0WjWZju4Lkrr8_9mFWALqCxkpCX28540GQA,10184
 rapidtide/workflows/proj2flow.py,sha256=SbkYTRZ_SViVfiM0QJjo20RrICtbsQpEd2i9o9XDgPU,7290
 rapidtide/workflows/rankimage.py,sha256=9opJb3OikO69wtN8zgF3XJxgoHy1-erzZiDKs8pDM6U,3482
-rapidtide/workflows/rapidtide.py,sha256=KdSgXM6PFA7ZScSlW3oqV7iD7XNViqul1dSP8V_SWNw,153985
+rapidtide/workflows/rapidtide.py,sha256=aoRCiZNOqxpIW6dRjh__DGovy5qMZDbvdz8bw11jZvg,154228
 rapidtide/workflows/rapidtide2std.py,sha256=coxEnRAof6NNpeXjjECPazx5Wotf4l1SJCnaVEvmHQY,10483
-rapidtide/workflows/rapidtide_parser.py,sha256=iBJ1H2VFCqQznRxvMyhDnQEfa9higvZBfUjzqFX0x4M,78244
-rapidtide/workflows/regressfrommaps.py,sha256=2qkD6e3wJ7Wo4M3xsQBHGOlzoZkz6IJv8vT92kv5RZE,5355
+rapidtide/workflows/rapidtide_parser.py,sha256=lua4DzNd9Vi7egAbba8z068zbWW5EKuwqxHQyaa-Kps,78457
+rapidtide/workflows/regressfrommaps.py,sha256=GTpqnOkyA1A3Ki0oZ0ugSJrjrYa2gbtIGeKPpF49IxU,5319
 rapidtide/workflows/resamplenifti.py,sha256=GJE7f8bzMRY3QYiMYZOD8bDnga4ah97sp-ZL3yaaIFA,4717
 rapidtide/workflows/resampletc.py,sha256=B4YIKn3qpDaM9dIhYjGwPl-2LtaEhm9fnMBzfBgAUSs,3959
 rapidtide/workflows/retrolagtcs.py,sha256=ep1Ve1GS9NqqE6Pw9kxeWyw78sEg-M1IV-KuSnivd7Y,10847
 rapidtide/workflows/retroregress.py,sha256=sd7L_ri8av1euINcpKLgokrPGQo7QKQDguf0OWL8xD0,52631
 rapidtide/workflows/roisummarize.py,sha256=gnGcWOXRgRm6USgilj9K9Q3Mt5oUNCaincvJj1_ayPs,6710
 rapidtide/workflows/runqualitycheck.py,sha256=JIA2olhDk66HHSbLvsFrZieQq56YCIpbWpFzz0_ShHM,2434
-rapidtide/workflows/showarbcorr.py,sha256=mJpF2wSaMNw_jPZv4ru4x9x-rIOTDAABYZw7ZYesjF8,13606
+rapidtide/workflows/showarbcorr.py,sha256=FYgc_L8E0IqUeB4XpFZIFXHMuzWYLxQykwyfYTVZ0G8,14115
 rapidtide/workflows/showhist.py,sha256=qP6JOdw4SyuzIcY6OUOkM4zmqLSWvEA8Z9LerqyzFmI,3644
 rapidtide/workflows/showstxcorr.py,sha256=FulltRbjGaBBIIRF9Wc_4oU2bpmMjfc3tZus5TygOlI,17788
 rapidtide/workflows/showtc.py,sha256=mddcdbpRzLXIiTqnutVqQapa9fudAeK3uALBVgM-dDE,18835
-rapidtide/workflows/showxcorrx.py,sha256=pPGIUqF7cVuPmq8aaZ-OSup6akeKQC85fJPqUEyG31w,31370
+rapidtide/workflows/showxcorrx.py,sha256=6QF2w7T5xxIOgaHIJHKlMWkxb9MBPA56eZk-spW0S-c,31221
 rapidtide/workflows/showxy.py,sha256=p-1pkE5cKVd2zMQ-kSI3-Xk21jHSLiQPa-ql1DIO-vc,10532
-rapidtide/workflows/simdata.py,sha256=YahDPmVM-lOV1qgpbfkq6QwrS2Pa99IRlfMglNXDQ1I,13827
+rapidtide/workflows/simdata.py,sha256=sLW1iu3Gn5zXuXsbAwMS5jdoppkxjhf-ZW17PgDjPFk,17318
 rapidtide/workflows/spatialfit.py,sha256=2p_f7nqYKauLTvwmhyfn7FiJ1BMzFsRxHfCQe2ULoXk,9136
 rapidtide/workflows/spatialmi.py,sha256=_Vvb2lukopzNh9QL9g6XBRvTlartZgq6Fzc2je-sbY8,13407
 rapidtide/workflows/spectrogram.py,sha256=7_CzFgX9ppE_2C4GiSP235BRUoh3YspCR_57_5Lx4HA,6452
@@ -349,9 +348,9 @@ rapidtide/workflows/tcfrom3col.py,sha256=kV3V-qZ7A7LkD96aHVXabvohA8udsflHXnzsQIw
 rapidtide/workflows/tidepool.py,sha256=Cac0zhS2ZT6myY_H2A0dAIox8ZoFyf42iB3flSb0qbw,86612
 rapidtide/workflows/utils.py,sha256=urIN-042oUCRDusVUSjBelVN3Te2JP3svY3ckq-yBMU,5379
 rapidtide/workflows/variabilityizer.py,sha256=h7Hhrxn84MclRfbAvKIZJoNzlcKO-8d9lZ6y6YFStk8,3167
-rapidtide-3.0.5.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
-rapidtide-3.0.5.dist-info/METADATA,sha256=T7MB_JdlZs48d-PfR-Xrtv5rOEE_BPrsnRBE-Y_Fhdw,15688
-rapidtide-3.0.5.dist-info/WHEEL,sha256=0CuiUZ_p9E4cD6NyLD6UG80LBXYyiSYZOKDm5lp32xk,91
-rapidtide-3.0.5.dist-info/entry_points.txt,sha256=9NVvZpIx9U6lTWlTFF2ev-wuPAHJxcXI_901_EcGRYA,3323
-rapidtide-3.0.5.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
-rapidtide-3.0.5.dist-info/RECORD,,
+rapidtide-3.0.7.dist-info/licenses/LICENSE,sha256=psuoW8kuDP96RQsdhzwOqi6fyWv0ct8CR6Jr7He_P_k,10173
+rapidtide-3.0.7.dist-info/METADATA,sha256=oa7HDGqrA2y0sAEhBZR0aeUPcm2u7lHdVmWYXb6D7nE,15688
+rapidtide-3.0.7.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
+rapidtide-3.0.7.dist-info/entry_points.txt,sha256=9NVvZpIx9U6lTWlTFF2ev-wuPAHJxcXI_901_EcGRYA,3323
+rapidtide-3.0.7.dist-info/top_level.txt,sha256=MnNXGfbrIBc9RnAqzBHOWd3GQO-aIUDnRTz4_5VjH5g,16
+rapidtide-3.0.7.dist-info/RECORD,,

{rapidtide-3.0.5.dist-info → rapidtide-3.0.7.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (80.3.1)
+Generator: setuptools (80.9.0)
 Root-Is-Purelib: true
 Tag: py3-none-any
 

rapidtide/DerivativeDelay.py

@@ -1,209 +0,0 @@
-#!/usr/bin/env python
-# -*- coding: utf-8 -*-
-#
-#   Copyright 2016-2025 Blaise Frederick
-#
-#   Licensed under the Apache License, Version 2.0 (the "License");
-#   you may not use this file except in compliance with the License.
-#   You may obtain a copy of the License at
-#
-#       http://www.apache.org/licenses/LICENSE-2.0
-#
-#   Unless required by applicable law or agreed to in writing, software
-#   distributed under the License is distributed on an "AS IS" BASIS,
-#   WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-#   See the License for the specific language governing permissions and
-#   limitations under the License.
-#
-#
-"""
-A class to impmement regressor refinement
-"""
-import copy
-
-import numpy as np
-
-import rapidtide.fit as tide_fit
-import rapidtide.io as tide_io
-import rapidtide.miscmath as tide_math
-import rapidtide.refinedelay as tide_refinedelay
-import rapidtide.resample as tide_resample
-import rapidtide.stats as tide_stats
-import rapidtide.util as tide_util
-from rapidtide.tests.utils import mse
-
-
-class DerivativeDelay:
-    def __init__(
-        self,
-        internalvalidfmrishape,
-        internalvalidpaddedfmrishape,
-        pid,
-        outputname,
-        initial_fmri_x,
-        paddedinitial_fmri_x,
-        os_fmri_x,
-        genlagtc,
-        sharedmem=False,
-        gausssigma=-1,
-        numderivs=1,
-        lagminthresh=0.25,
-        lagmaxthresh=3.0,
-        sigmathresh=1000.0,
-        cleanrefined=False,
-        bipolar=False,
-        fixdelay=False,
-        includemask=None,
-        excludemask=None,
-        LGR=None,
-        nprocs=1,
-        detrendorder=1,
-        alwaysmultiproc=False,
-        showprogressbar=True,
-        chunksize=50000,
-        padtrs=10,
-        refineprenorm="var",
-        refineweighting=None,
-        refinetype="pca",
-        pcacomponents=0.8,
-        dodispersioncalc=False,
-        dispersioncalc_lower=-5.0,
-        dispersioncalc_upper=5.0,
-        dispersioncalc_step=0.5,
-        windowfunc="hamming",
-        passes=3,
-        maxpasses=15,
-        convergencethresh=None,
-        interptype="univariate",
-        usetmask=False,
-        tmask_y=None,
-        tmaskos_y=None,
-        fastresamplerpadtime=45.0,
-        debug=False,
-        rt_floattype="float64",
-        rt_floatset=np.float64,
-    ):
-        self.outputname = outputname
-        self.numderivs = numderivs
-        if gausssigma < 0.0:
-            # set gausssigma automatically
-            self.gausssigma = np.mean([xdim, ydim, slicedim]) / 2.0
-        else:
-            self.gausssigma = gausssigma
-        self.debug = debug
-        self.setgenlagtc(genlagtc)
-
-    def setgenlagtc(self, genlagtc):
-        self.genlagtc = genlagtc
-
-    def getderivratios(
-        self, fmri_data_valid, validvoxels, initial_fmri_x, lagtimes_valid, corrmask_valid
-    ):
-        print("Refinement calibration start")
-        regressderivratios = tide_refinedelay.getderivratios(
-            fmri_data_valid,
-            validvoxels,
-            initial_fmri_x,
-            lagtimes_valid,
-            corrmask_valid,
-            self.genlagtc,
-            "glm",
-            self.outputname,
-            oversamptr,
-            sLFOfitmean,
-            rvalue,
-            r2value,
-            fitNorm[:, : (self.numderivs + 1)],
-            fitcoeff[:, : (self.numderivs + 1)],
-            movingsignal,
-            lagtc,
-            filtereddata,
-            LGR,
-            TimingLGR,
-            therunoptions,
-            regressderivs=self.numderivs,
-            debug=self.debug,
-        )
-
-    def calibrate(self):
-        if self.numderivs == 1:
-            medfiltregressderivratios, filteredregressderivratios, delayoffsetMAD = (
-                tide_refinedelay.filterderivratios(
-                    regressderivratios,
-                    (xsize, ysize, numslices),
-                    validvoxels,
-                    (xdim, ydim, slicedim),
-                    gausssigma=args.delayoffsetgausssigma,
-                    patchthresh=args.delaypatchthresh,
-                    rt_floattype=rt_floattype,
-                    debug=args.debug,
-                )
-            )
-
-            # find the mapping of derivative ratios to delays
-            tide_refinedelay.trainratiotooffset(
-                self.genlagtc,
-                initial_fmri_x,
-                self.outputname,
-                args.outputlevel,
-                mindelay=args.mindelay,
-                maxdelay=args.maxdelay,
-                numpoints=args.numpoints,
-                debug=args.debug,
-            )
-            TimingLGR.info("Refinement calibration end")
-
-            # now calculate the delay offsets
-            TimingLGR.info("Calculating delay offsets")
-            delayoffset = np.zeros_like(filteredregressderivratios)
-            if args.focaldebug:
-                print(f"calculating delayoffsets for {filteredregressderivratios.shape[0]} voxels")
-            for i in range(filteredregressderivratios.shape[0]):
-                delayoffset[i], closestoffset = tide_refinedelay.ratiotodelay(
-                    filteredregressderivratios[i]
-                )
-            refinedvoxelstoreport = filteredregressderivratios.shape[0]
-        else:
-            medfiltregressderivratios = np.zeros_like(regressderivratios)
-            filteredregressderivratios = np.zeros_like(regressderivratios)
-            delayoffsetMAD = np.zeros(args.refineregressderivs, dtype=float)
-            for i in range(args.refineregressderivs):
-                (
-                    medfiltregressderivratios[i, :],
-                    filteredregressderivratios[i, :],
-                    delayoffsetMAD[i],
-                ) = tide_refinedelay.filterderivratios(
-                    regressderivratios[i, :],
-                    (xsize, ysize, numslices),
-                    validvoxels,
-                    (xdim, ydim, slicedim),
-                    gausssigma=args.delayoffsetgausssigma,
-                    patchthresh=args.delaypatchthresh,
-                    rt_floattype=rt_floattype,
-                    debug=args.debug,
-                )
-
-    def getdelays(self):
-        # now calculate the delay offsets
-        delayoffset = np.zeros_like(filteredregressderivratios[0, :])
-        if self.debug:
-            print(f"calculating delayoffsets for {filteredregressderivratios.shape[1]} voxels")
-        for i in range(filteredregressderivratios.shape[1]):
-            delayoffset[i] = tide_refinedelay.coffstodelay(
-                filteredregressderivratios[:, i],
-                mindelay=self.mindelay,
-                maxdelay=self.maxdelay,
-            )
-        refinedvoxelstoreport = filteredregressderivratios.shape[1]
-
-    def savestats(self):
-        namesuffix = "_desc-delayoffset_hist"
-        tide_stats.makeandsavehistogram(
-            delayoffset,
-            therunoptions["histlen"],
-            1,
-            self.outputname + namesuffix,
-            displaytitle="Histogram of delay offsets calculated from coefficient ratios",
-            dictvarname="delayoffsethist",
-            thedict=None,
-        )