rapidtide 3.0.11__py3-none-any.whl → 3.1.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (144) hide show
  1. rapidtide/Colortables.py +492 -27
  2. rapidtide/OrthoImageItem.py +1049 -46
  3. rapidtide/RapidtideDataset.py +1533 -86
  4. rapidtide/_version.py +3 -3
  5. rapidtide/calccoherence.py +196 -29
  6. rapidtide/calcnullsimfunc.py +188 -40
  7. rapidtide/calcsimfunc.py +242 -42
  8. rapidtide/correlate.py +1203 -383
  9. rapidtide/data/examples/src/testLD +56 -0
  10. rapidtide/data/examples/src/testalign +1 -1
  11. rapidtide/data/examples/src/testdelayvar +0 -1
  12. rapidtide/data/examples/src/testfmri +53 -3
  13. rapidtide/data/examples/src/testglmfilt +5 -5
  14. rapidtide/data/examples/src/testhappy +29 -7
  15. rapidtide/data/examples/src/testppgproc +17 -0
  16. rapidtide/data/examples/src/testrolloff +11 -0
  17. rapidtide/data/models/model_cnn_pytorch/best_model.pth +0 -0
  18. rapidtide/data/models/model_cnn_pytorch/loss.png +0 -0
  19. rapidtide/data/models/model_cnn_pytorch/loss.txt +1 -0
  20. rapidtide/data/models/model_cnn_pytorch/model.pth +0 -0
  21. rapidtide/data/models/model_cnn_pytorch/model_meta.json +68 -0
  22. rapidtide/decorators.py +91 -0
  23. rapidtide/dlfilter.py +2226 -110
  24. rapidtide/dlfiltertorch.py +4842 -0
  25. rapidtide/externaltools.py +327 -12
  26. rapidtide/fMRIData_class.py +79 -40
  27. rapidtide/filter.py +1899 -810
  28. rapidtide/fit.py +2011 -581
  29. rapidtide/genericmultiproc.py +93 -18
  30. rapidtide/happy_supportfuncs.py +2047 -172
  31. rapidtide/helper_classes.py +584 -43
  32. rapidtide/io.py +2370 -372
  33. rapidtide/linfitfiltpass.py +346 -99
  34. rapidtide/makelaggedtcs.py +210 -24
  35. rapidtide/maskutil.py +448 -62
  36. rapidtide/miscmath.py +827 -121
  37. rapidtide/multiproc.py +210 -22
  38. rapidtide/patchmatch.py +242 -42
  39. rapidtide/peakeval.py +31 -31
  40. rapidtide/ppgproc.py +2203 -0
  41. rapidtide/qualitycheck.py +352 -39
  42. rapidtide/refinedelay.py +431 -57
  43. rapidtide/refineregressor.py +494 -189
  44. rapidtide/resample.py +671 -185
  45. rapidtide/scripts/applyppgproc.py +28 -0
  46. rapidtide/scripts/showxcorr_legacy.py +7 -7
  47. rapidtide/scripts/stupidramtricks.py +15 -17
  48. rapidtide/simFuncClasses.py +1052 -77
  49. rapidtide/simfuncfit.py +269 -69
  50. rapidtide/stats.py +540 -238
  51. rapidtide/tests/happycomp +9 -0
  52. rapidtide/tests/test_cleanregressor.py +1 -2
  53. rapidtide/tests/test_dlfiltertorch.py +627 -0
  54. rapidtide/tests/test_findmaxlag.py +24 -8
  55. rapidtide/tests/test_fullrunhappy_v1.py +0 -2
  56. rapidtide/tests/test_fullrunhappy_v2.py +0 -2
  57. rapidtide/tests/test_fullrunhappy_v3.py +11 -4
  58. rapidtide/tests/test_fullrunhappy_v4.py +10 -2
  59. rapidtide/tests/test_fullrunrapidtide_v7.py +1 -1
  60. rapidtide/tests/test_getparsers.py +11 -3
  61. rapidtide/tests/test_refinedelay.py +0 -1
  62. rapidtide/tests/test_simroundtrip.py +16 -8
  63. rapidtide/tests/test_stcorrelate.py +3 -1
  64. rapidtide/tests/utils.py +9 -8
  65. rapidtide/tidepoolTemplate.py +142 -38
  66. rapidtide/tidepoolTemplate_alt.py +165 -44
  67. rapidtide/tidepoolTemplate_big.py +189 -52
  68. rapidtide/util.py +1217 -118
  69. rapidtide/voxelData.py +684 -37
  70. rapidtide/wiener.py +136 -23
  71. rapidtide/wiener2.py +113 -7
  72. rapidtide/workflows/adjustoffset.py +105 -3
  73. rapidtide/workflows/aligntcs.py +85 -2
  74. rapidtide/workflows/applydlfilter.py +87 -10
  75. rapidtide/workflows/applyppgproc.py +540 -0
  76. rapidtide/workflows/atlasaverage.py +210 -47
  77. rapidtide/workflows/atlastool.py +100 -3
  78. rapidtide/workflows/calcSimFuncMap.py +288 -69
  79. rapidtide/workflows/calctexticc.py +201 -9
  80. rapidtide/workflows/ccorrica.py +101 -6
  81. rapidtide/workflows/cleanregressor.py +165 -31
  82. rapidtide/workflows/delayvar.py +171 -23
  83. rapidtide/workflows/diffrois.py +81 -3
  84. rapidtide/workflows/endtidalproc.py +144 -4
  85. rapidtide/workflows/fdica.py +195 -15
  86. rapidtide/workflows/filtnifti.py +70 -3
  87. rapidtide/workflows/filttc.py +74 -3
  88. rapidtide/workflows/fitSimFuncMap.py +202 -51
  89. rapidtide/workflows/fixtr.py +73 -3
  90. rapidtide/workflows/gmscalc.py +113 -3
  91. rapidtide/workflows/happy.py +801 -199
  92. rapidtide/workflows/happy2std.py +144 -12
  93. rapidtide/workflows/happy_parser.py +163 -23
  94. rapidtide/workflows/histnifti.py +118 -2
  95. rapidtide/workflows/histtc.py +84 -3
  96. rapidtide/workflows/linfitfilt.py +117 -4
  97. rapidtide/workflows/localflow.py +328 -28
  98. rapidtide/workflows/mergequality.py +79 -3
  99. rapidtide/workflows/niftidecomp.py +322 -18
  100. rapidtide/workflows/niftistats.py +174 -4
  101. rapidtide/workflows/pairproc.py +98 -4
  102. rapidtide/workflows/pairwisemergenifti.py +85 -2
  103. rapidtide/workflows/parser_funcs.py +1421 -40
  104. rapidtide/workflows/physiofreq.py +137 -11
  105. rapidtide/workflows/pixelcomp.py +207 -5
  106. rapidtide/workflows/plethquality.py +103 -21
  107. rapidtide/workflows/polyfitim.py +151 -11
  108. rapidtide/workflows/proj2flow.py +75 -2
  109. rapidtide/workflows/rankimage.py +111 -4
  110. rapidtide/workflows/rapidtide.py +368 -76
  111. rapidtide/workflows/rapidtide2std.py +98 -2
  112. rapidtide/workflows/rapidtide_parser.py +109 -9
  113. rapidtide/workflows/refineDelayMap.py +144 -33
  114. rapidtide/workflows/refineRegressor.py +675 -96
  115. rapidtide/workflows/regressfrommaps.py +161 -37
  116. rapidtide/workflows/resamplenifti.py +85 -3
  117. rapidtide/workflows/resampletc.py +91 -3
  118. rapidtide/workflows/retrolagtcs.py +99 -9
  119. rapidtide/workflows/retroregress.py +176 -26
  120. rapidtide/workflows/roisummarize.py +174 -5
  121. rapidtide/workflows/runqualitycheck.py +71 -3
  122. rapidtide/workflows/showarbcorr.py +149 -6
  123. rapidtide/workflows/showhist.py +86 -2
  124. rapidtide/workflows/showstxcorr.py +160 -3
  125. rapidtide/workflows/showtc.py +159 -3
  126. rapidtide/workflows/showxcorrx.py +190 -10
  127. rapidtide/workflows/showxy.py +185 -15
  128. rapidtide/workflows/simdata.py +264 -38
  129. rapidtide/workflows/spatialfit.py +77 -2
  130. rapidtide/workflows/spatialmi.py +250 -27
  131. rapidtide/workflows/spectrogram.py +305 -32
  132. rapidtide/workflows/synthASL.py +154 -3
  133. rapidtide/workflows/tcfrom2col.py +76 -2
  134. rapidtide/workflows/tcfrom3col.py +74 -2
  135. rapidtide/workflows/tidepool.py +2971 -130
  136. rapidtide/workflows/utils.py +19 -14
  137. rapidtide/workflows/utils_doc.py +293 -0
  138. rapidtide/workflows/variabilityizer.py +116 -3
  139. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/METADATA +10 -8
  140. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/RECORD +144 -128
  141. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/entry_points.txt +1 -0
  142. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/WHEEL +0 -0
  143. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/licenses/LICENSE +0 -0
  144. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/top_level.txt +0 -0
rapidtide/tidepoolTemplate_alt.py CHANGED
@@ -15,7 +15,9 @@ class Ui_MainWindow(object):
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  def setupUi(self, MainWindow):
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  MainWindow.setObjectName("MainWindow")
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  MainWindow.resize(1375, 805)
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- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding)
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+ sizePolicy = QtWidgets.QSizePolicy(
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+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding
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+ )
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  sizePolicy.setHorizontalStretch(1)
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  sizePolicy.setVerticalStretch(1)
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  sizePolicy.setHeightForWidth(MainWindow.sizePolicy().hasHeightForWidth())
@@ -27,7 +29,9 @@ class Ui_MainWindow(object):
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  self.centralwidget.setObjectName("centralwidget")
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  self.imageData_groupBox = QtWidgets.QGroupBox(self.centralwidget)
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  self.imageData_groupBox.setGeometry(QtCore.QRect(220, 5, 561, 591))
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- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum)
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+ sizePolicy = QtWidgets.QSizePolicy(
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+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Maximum
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+ )
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  sizePolicy.setHorizontalStretch(1)
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  sizePolicy.setVerticalStretch(1)
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  sizePolicy.setHeightForWidth(self.imageData_groupBox.sizePolicy().hasHeightForWidth())
@@ -50,7 +54,11 @@ class Ui_MainWindow(object):
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  self.verticalLayout_3.setSpacing(0)
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  self.verticalLayout_3.setObjectName("verticalLayout_3")
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  self.dispmax_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.imageData_groupBox)
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- self.dispmax_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
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+ self.dispmax_doubleSpinBox.setAlignment(
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+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
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+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
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+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
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+ )
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  self.dispmax_doubleSpinBox.setDecimals(3)
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  self.dispmax_doubleSpinBox.setObjectName("dispmax_doubleSpinBox")
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  self.verticalLayout_3.addWidget(self.dispmax_doubleSpinBox)
@@ -67,7 +75,11 @@ class Ui_MainWindow(object):
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  self.setMask_Button.setObjectName("setMask_Button")
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  self.verticalLayout_3.addWidget(self.setMask_Button)
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  self.dispmin_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.imageData_groupBox)
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- self.dispmin_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
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+ self.dispmin_doubleSpinBox.setAlignment(
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+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
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+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
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+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
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+ )
71
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  self.dispmin_doubleSpinBox.setDecimals(3)
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  self.dispmin_doubleSpinBox.setObjectName("dispmin_doubleSpinBox")
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  self.verticalLayout_3.addWidget(self.dispmin_doubleSpinBox)
@@ -77,7 +89,9 @@ class Ui_MainWindow(object):
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  self.verticalLayout_3.addWidget(self.transparency_checkBox)
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  self.gridLayout_2.addLayout(self.verticalLayout_3, 0, 1, 1, 1)
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  self.graphicsView_colorbar = GraphicsView(self.imageData_groupBox)
80
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Minimum)
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+ sizePolicy = QtWidgets.QSizePolicy(
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+ QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Minimum
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+ )
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.graphicsView_colorbar.sizePolicy().hasHeightForWidth())
@@ -85,11 +99,15 @@ class Ui_MainWindow(object):
85
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  self.graphicsView_colorbar.setMinimumSize(QtCore.QSize(25, 128))
86
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  self.graphicsView_colorbar.setMaximumSize(QtCore.QSize(25, 256))
87
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  self.graphicsView_colorbar.setSizeIncrement(QtCore.QSize(0, 1))
88
- self.graphicsView_colorbar.setResizeAnchor(QtCore.Qt.QGraphicsView.ViewportAnchor.AnchorViewCenter)
102
+ self.graphicsView_colorbar.setResizeAnchor(
103
+ QtCore.Qt.QGraphicsView.ViewportAnchor.AnchorViewCenter
104
+ )
89
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  self.graphicsView_colorbar.setObjectName("graphicsView_colorbar")
90
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  self.gridLayout_2.addWidget(self.graphicsView_colorbar, 0, 0, 1, 1)
91
107
  self.aspects_verticalLayout = QtWidgets.QVBoxLayout()
92
- self.aspects_verticalLayout.setSizeConstraint(QtCore.Qt.QLayout.SizeConstraint.SetMinimumSize)
108
+ self.aspects_verticalLayout.setSizeConstraint(
109
+ QtCore.Qt.QLayout.SizeConstraint.SetMinimumSize
110
+ )
93
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  self.aspects_verticalLayout.setSpacing(0)
94
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  self.aspects_verticalLayout.setObjectName("aspects_verticalLayout")
95
113
  self.verticalLayout_4 = QtWidgets.QVBoxLayout()
@@ -214,7 +232,9 @@ class Ui_MainWindow(object):
214
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  self.gridLayout_2.addLayout(self.aspects_verticalLayout, 0, 2, 1, 1)
215
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  self.gridLayout.addLayout(self.gridLayout_2, 2, 2, 1, 1)
216
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  self.main_graphicsView_cor = GraphicsLayoutWidget(self.imageData_groupBox)
217
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding)
235
+ sizePolicy = QtWidgets.QSizePolicy(
236
+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding
237
+ )
218
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  sizePolicy.setHorizontalStretch(0)
219
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  sizePolicy.setVerticalStretch(0)
220
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  sizePolicy.setHeightForWidth(self.main_graphicsView_cor.sizePolicy().hasHeightForWidth())
@@ -227,7 +247,9 @@ class Ui_MainWindow(object):
227
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  self.main_graphicsView_cor.setObjectName("main_graphicsView_cor")
228
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  self.gridLayout.addWidget(self.main_graphicsView_cor, 1, 2, 1, 1)
229
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  self.main_graphicsView_sag = GraphicsLayoutWidget(self.imageData_groupBox)
230
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding)
250
+ sizePolicy = QtWidgets.QSizePolicy(
251
+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding
252
+ )
231
253
  sizePolicy.setHorizontalStretch(0)
232
254
  sizePolicy.setVerticalStretch(0)
233
255
  sizePolicy.setHeightForWidth(self.main_graphicsView_sag.sizePolicy().hasHeightForWidth())
@@ -240,7 +262,9 @@ class Ui_MainWindow(object):
240
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  self.main_graphicsView_sag.setObjectName("main_graphicsView_sag")
241
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  self.gridLayout.addWidget(self.main_graphicsView_sag, 2, 1, 1, 1)
242
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  self.main_graphicsView_ax = GraphicsLayoutWidget(self.imageData_groupBox)
243
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding)
265
+ sizePolicy = QtWidgets.QSizePolicy(
266
+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding
267
+ )
244
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  sizePolicy.setHorizontalStretch(0)
245
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  sizePolicy.setVerticalStretch(0)
246
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  sizePolicy.setHeightForWidth(self.main_graphicsView_ax.sizePolicy().hasHeightForWidth())
@@ -250,12 +274,16 @@ class Ui_MainWindow(object):
250
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  self.main_graphicsView_ax.setSizeIncrement(QtCore.QSize(1, 1))
251
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  self.main_graphicsView_ax.setFrameShape(QtCore.Qt.QFrame.Shape.NoFrame)
252
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  self.main_graphicsView_ax.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignCenter)
253
- self.main_graphicsView_ax.setViewportUpdateMode(QtCore.Qt.QGraphicsView.ViewportUpdateMode.SmartViewportUpdate)
277
+ self.main_graphicsView_ax.setViewportUpdateMode(
278
+ QtCore.Qt.QGraphicsView.ViewportUpdateMode.SmartViewportUpdate
279
+ )
254
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  self.main_graphicsView_ax.setObjectName("main_graphicsView_ax")
255
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  self.gridLayout.addWidget(self.main_graphicsView_ax, 1, 1, 1, 1)
256
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  self.overlays_groupBox = QtWidgets.QGroupBox(self.centralwidget)
257
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  self.overlays_groupBox.setGeometry(QtCore.QRect(0, 5, 211, 591))
258
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred)
284
+ sizePolicy = QtWidgets.QSizePolicy(
285
+ QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred
286
+ )
259
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.overlays_groupBox.sizePolicy().hasHeightForWidth())
@@ -276,7 +304,9 @@ class Ui_MainWindow(object):
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  self.overlay_radioButton_05.setObjectName("overlay_radioButton_05")
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  self.overlay_graphicsView_01 = GraphicsLayoutWidget(self.overlays_groupBox)
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  self.overlay_graphicsView_01.setGeometry(QtCore.QRect(10, 25, 192, 64))
279
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
307
+ sizePolicy = QtWidgets.QSizePolicy(
308
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
309
+ )
280
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  sizePolicy.setHorizontalStretch(0)
281
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  sizePolicy.setVerticalStretch(0)
282
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  sizePolicy.setHeightForWidth(self.overlay_graphicsView_01.sizePolicy().hasHeightForWidth())
@@ -353,7 +383,9 @@ class Ui_MainWindow(object):
353
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  self.overlay_radioButton_08.setObjectName("overlay_radioButton_08")
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  self.overlay_graphicsView_04 = GraphicsLayoutWidget(self.overlays_groupBox)
355
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  self.overlay_graphicsView_04.setGeometry(QtCore.QRect(10, 235, 192, 64))
356
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
386
+ sizePolicy = QtWidgets.QSizePolicy(
387
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
388
+ )
357
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  sizePolicy.setHorizontalStretch(0)
358
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  sizePolicy.setVerticalStretch(0)
359
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  sizePolicy.setHeightForWidth(self.overlay_graphicsView_04.sizePolicy().hasHeightForWidth())
@@ -365,7 +397,9 @@ class Ui_MainWindow(object):
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  self.overlay_graphicsView_04.setObjectName("overlay_graphicsView_04")
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  self.overlay_graphicsView_06 = GraphicsLayoutWidget(self.overlays_groupBox)
367
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  self.overlay_graphicsView_06.setGeometry(QtCore.QRect(10, 375, 192, 64))
368
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
400
+ sizePolicy = QtWidgets.QSizePolicy(
401
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
402
+ )
369
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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405
  sizePolicy.setHeightForWidth(self.overlay_graphicsView_06.sizePolicy().hasHeightForWidth())
@@ -377,7 +411,9 @@ class Ui_MainWindow(object):
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  self.overlay_graphicsView_06.setObjectName("overlay_graphicsView_06")
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  self.overlay_graphicsView_03 = GraphicsLayoutWidget(self.overlays_groupBox)
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  self.overlay_graphicsView_03.setGeometry(QtCore.QRect(10, 165, 192, 64))
380
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
414
+ sizePolicy = QtWidgets.QSizePolicy(
415
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
416
+ )
381
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  sizePolicy.setHorizontalStretch(0)
382
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.overlay_graphicsView_03.sizePolicy().hasHeightForWidth())
@@ -389,7 +425,9 @@ class Ui_MainWindow(object):
389
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  self.overlay_graphicsView_03.setObjectName("overlay_graphicsView_03")
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  self.overlay_graphicsView_08 = GraphicsLayoutWidget(self.overlays_groupBox)
391
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  self.overlay_graphicsView_08.setGeometry(QtCore.QRect(10, 515, 192, 64))
392
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
428
+ sizePolicy = QtWidgets.QSizePolicy(
429
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
430
+ )
393
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  sizePolicy.setHorizontalStretch(0)
394
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.overlay_graphicsView_08.sizePolicy().hasHeightForWidth())
@@ -401,7 +439,9 @@ class Ui_MainWindow(object):
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  self.overlay_graphicsView_08.setObjectName("overlay_graphicsView_08")
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  self.overlay_graphicsView_05 = GraphicsLayoutWidget(self.overlays_groupBox)
403
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  self.overlay_graphicsView_05.setGeometry(QtCore.QRect(10, 305, 192, 64))
404
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
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+ sizePolicy = QtWidgets.QSizePolicy(
443
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
444
+ )
405
445
  sizePolicy.setHorizontalStretch(0)
406
446
  sizePolicy.setVerticalStretch(0)
407
447
  sizePolicy.setHeightForWidth(self.overlay_graphicsView_05.sizePolicy().hasHeightForWidth())
@@ -413,7 +453,9 @@ class Ui_MainWindow(object):
413
453
  self.overlay_graphicsView_05.setObjectName("overlay_graphicsView_05")
414
454
  self.overlay_graphicsView_02 = GraphicsLayoutWidget(self.overlays_groupBox)
415
455
  self.overlay_graphicsView_02.setGeometry(QtCore.QRect(10, 95, 192, 64))
416
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
456
+ sizePolicy = QtWidgets.QSizePolicy(
457
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
458
+ )
417
459
  sizePolicy.setHorizontalStretch(0)
418
460
  sizePolicy.setVerticalStretch(0)
419
461
  sizePolicy.setHeightForWidth(self.overlay_graphicsView_02.sizePolicy().hasHeightForWidth())
@@ -425,7 +467,9 @@ class Ui_MainWindow(object):
425
467
  self.overlay_graphicsView_02.setObjectName("overlay_graphicsView_02")
426
468
  self.overlay_graphicsView_07 = GraphicsLayoutWidget(self.overlays_groupBox)
427
469
  self.overlay_graphicsView_07.setGeometry(QtCore.QRect(10, 445, 192, 64))
428
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
470
+ sizePolicy = QtWidgets.QSizePolicy(
471
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
472
+ )
429
473
  sizePolicy.setHorizontalStretch(0)
430
474
  sizePolicy.setVerticalStretch(0)
431
475
  sizePolicy.setHeightForWidth(self.overlay_graphicsView_07.sizePolicy().hasHeightForWidth())
@@ -454,7 +498,9 @@ class Ui_MainWindow(object):
454
498
  self.corrout_radioButton.raise_()
455
499
  self.histogram_groupBox = QtWidgets.QGroupBox(self.centralwidget)
456
500
  self.histogram_groupBox.setGeometry(QtCore.QRect(790, 223, 571, 186))
457
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding)
501
+ sizePolicy = QtWidgets.QSizePolicy(
502
+ QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding
503
+ )
458
504
  sizePolicy.setHorizontalStretch(0)
459
505
  sizePolicy.setVerticalStretch(0)
460
506
  sizePolicy.setHeightForWidth(self.histogram_groupBox.sizePolicy().hasHeightForWidth())
@@ -467,7 +513,9 @@ class Ui_MainWindow(object):
467
513
  self.histogram_groupBox.setObjectName("histogram_groupBox")
468
514
  self.histogram_graphicsView = GraphicsLayoutWidget(self.histogram_groupBox)
469
515
  self.histogram_graphicsView.setGeometry(QtCore.QRect(10, 25, 551, 151))
470
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.MinimumExpanding)
516
+ sizePolicy = QtWidgets.QSizePolicy(
517
+ QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.MinimumExpanding
518
+ )
471
519
  sizePolicy.setHorizontalStretch(0)
472
520
  sizePolicy.setVerticalStretch(0)
473
521
  sizePolicy.setHeightForWidth(self.histogram_graphicsView.sizePolicy().hasHeightForWidth())
@@ -486,7 +534,11 @@ class Ui_MainWindow(object):
486
534
  self.label_4.setObjectName("label_4")
487
535
  self.pixnumX_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
488
536
  self.pixnumX_doubleSpinBox.setGeometry(QtCore.QRect(30, 30, 67, 24))
489
- self.pixnumX_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
537
+ self.pixnumX_doubleSpinBox.setAlignment(
538
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
539
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
540
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
541
+ )
490
542
  self.pixnumX_doubleSpinBox.setDecimals(0)
491
543
  self.pixnumX_doubleSpinBox.setObjectName("pixnumX_doubleSpinBox")
492
544
  self.label_7 = QtWidgets.QLabel(self.mainimagedata_groupBox)
@@ -497,7 +549,11 @@ class Ui_MainWindow(object):
497
549
  self.label_7.setObjectName("label_7")
498
550
  self.coordX_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
499
551
  self.coordX_doubleSpinBox.setGeometry(QtCore.QRect(100, 30, 67, 24))
500
- self.coordX_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
552
+ self.coordX_doubleSpinBox.setAlignment(
553
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
554
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
555
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
556
+ )
501
557
  self.coordX_doubleSpinBox.setDecimals(3)
502
558
  self.coordX_doubleSpinBox.setObjectName("coordX_doubleSpinBox")
503
559
  self.label_9 = QtWidgets.QLabel(self.mainimagedata_groupBox)
@@ -508,22 +564,38 @@ class Ui_MainWindow(object):
508
564
  self.label_9.setObjectName("label_9")
509
565
  self.pixnumY_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
510
566
  self.pixnumY_doubleSpinBox.setGeometry(QtCore.QRect(30, 55, 67, 24))
511
- self.pixnumY_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
567
+ self.pixnumY_doubleSpinBox.setAlignment(
568
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
569
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
570
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
571
+ )
512
572
  self.pixnumY_doubleSpinBox.setDecimals(0)
513
573
  self.pixnumY_doubleSpinBox.setObjectName("pixnumY_doubleSpinBox")
514
574
  self.coordY_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
515
575
  self.coordY_doubleSpinBox.setGeometry(QtCore.QRect(100, 55, 67, 24))
516
- self.coordY_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
576
+ self.coordY_doubleSpinBox.setAlignment(
577
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
578
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
579
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
580
+ )
517
581
  self.coordY_doubleSpinBox.setDecimals(3)
518
582
  self.coordY_doubleSpinBox.setObjectName("coordY_doubleSpinBox")
519
583
  self.pixnumZ_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
520
584
  self.pixnumZ_doubleSpinBox.setGeometry(QtCore.QRect(30, 80, 67, 24))
521
- self.pixnumZ_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
585
+ self.pixnumZ_doubleSpinBox.setAlignment(
586
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
587
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
588
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
589
+ )
522
590
  self.pixnumZ_doubleSpinBox.setDecimals(0)
523
591
  self.pixnumZ_doubleSpinBox.setObjectName("pixnumZ_doubleSpinBox")
524
592
  self.coordZ_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
525
593
  self.coordZ_doubleSpinBox.setGeometry(QtCore.QRect(100, 80, 67, 24))
526
- self.coordZ_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
594
+ self.coordZ_doubleSpinBox.setAlignment(
595
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
596
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
597
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
598
+ )
527
599
  self.coordZ_doubleSpinBox.setDecimals(3)
528
600
  self.coordZ_doubleSpinBox.setObjectName("coordZ_doubleSpinBox")
529
601
  self.label_6 = QtWidgets.QLabel(self.mainimagedata_groupBox)
@@ -534,12 +606,20 @@ class Ui_MainWindow(object):
534
606
  self.label_8.setObjectName("label_8")
535
607
  self.coordT_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
536
608
  self.coordT_doubleSpinBox.setGeometry(QtCore.QRect(100, 130, 67, 24))
537
- self.coordT_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
609
+ self.coordT_doubleSpinBox.setAlignment(
610
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
611
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
612
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
613
+ )
538
614
  self.coordT_doubleSpinBox.setDecimals(3)
539
615
  self.coordT_doubleSpinBox.setObjectName("coordT_doubleSpinBox")
540
616
  self.pixnumT_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
541
617
  self.pixnumT_doubleSpinBox.setGeometry(QtCore.QRect(30, 130, 67, 24))
542
- self.pixnumT_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
618
+ self.pixnumT_doubleSpinBox.setAlignment(
619
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
620
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
621
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
622
+ )
543
623
  self.pixnumT_doubleSpinBox.setDecimals(0)
544
624
  self.pixnumT_doubleSpinBox.setObjectName("pixnumT_doubleSpinBox")
545
625
  self.label_3 = QtWidgets.QLabel(self.mainimagedata_groupBox)
@@ -566,7 +646,9 @@ class Ui_MainWindow(object):
566
646
  self.runMovieButton.setObjectName("runMovieButton")
567
647
  self.regressor_groupBox = QtWidgets.QGroupBox(self.centralwidget)
568
648
  self.regressor_groupBox.setGeometry(QtCore.QRect(0, 590, 1361, 181))
569
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding)
649
+ sizePolicy = QtWidgets.QSizePolicy(
650
+ QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding
651
+ )
570
652
  sizePolicy.setHorizontalStretch(0)
571
653
  sizePolicy.setVerticalStretch(0)
572
654
  sizePolicy.setHeightForWidth(self.regressor_groupBox.sizePolicy().hasHeightForWidth())
@@ -579,10 +661,14 @@ class Ui_MainWindow(object):
579
661
  self.regressor_groupBox.setObjectName("regressor_groupBox")
580
662
  self.regressorspectrum_graphicsView = GraphicsLayoutWidget(self.regressor_groupBox)
581
663
  self.regressorspectrum_graphicsView.setGeometry(QtCore.QRect(630, 23, 610, 131))
582
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
664
+ sizePolicy = QtWidgets.QSizePolicy(
665
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
666
+ )
583
667
  sizePolicy.setHorizontalStretch(0)
584
668
  sizePolicy.setVerticalStretch(0)
585
- sizePolicy.setHeightForWidth(self.regressorspectrum_graphicsView.sizePolicy().hasHeightForWidth())
669
+ sizePolicy.setHeightForWidth(
670
+ self.regressorspectrum_graphicsView.sizePolicy().hasHeightForWidth()
671
+ )
586
672
  self.regressorspectrum_graphicsView.setSizePolicy(sizePolicy)
587
673
  self.regressorspectrum_graphicsView.setMinimumSize(QtCore.QSize(610, 100))
588
674
  self.regressorspectrum_graphicsView.setMaximumSize(QtCore.QSize(610, 1000))
@@ -591,10 +677,14 @@ class Ui_MainWindow(object):
591
677
  self.regressortimecourse_graphicsView = GraphicsLayoutWidget(self.regressor_groupBox)
592
678
  self.regressortimecourse_graphicsView.setEnabled(True)
593
679
  self.regressortimecourse_graphicsView.setGeometry(QtCore.QRect(10, 23, 610, 131))
594
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
680
+ sizePolicy = QtWidgets.QSizePolicy(
681
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
682
+ )
595
683
  sizePolicy.setHorizontalStretch(0)
596
684
  sizePolicy.setVerticalStretch(0)
597
- sizePolicy.setHeightForWidth(self.regressortimecourse_graphicsView.sizePolicy().hasHeightForWidth())
685
+ sizePolicy.setHeightForWidth(
686
+ self.regressortimecourse_graphicsView.sizePolicy().hasHeightForWidth()
687
+ )
598
688
  self.regressortimecourse_graphicsView.setSizePolicy(sizePolicy)
599
689
  self.regressortimecourse_graphicsView.setMinimumSize(QtCore.QSize(610, 100))
600
690
  self.regressortimecourse_graphicsView.setMaximumSize(QtCore.QSize(610, 1000))
@@ -650,7 +740,9 @@ class Ui_MainWindow(object):
650
740
  self.pass4_radioButton.setFont(font)
651
741
  self.pass4_radioButton.setObjectName("pass4_radioButton")
652
742
  self.verticalLayout.addWidget(self.pass4_radioButton)
653
- spacerItem = QtWidgets.QSpacerItem(20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding)
743
+ spacerItem = QtWidgets.QSpacerItem(
744
+ 20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding
745
+ )
654
746
  self.verticalLayout.addItem(spacerItem)
655
747
  self.label_5 = QtWidgets.QLabel(self.regressor_groupBox)
656
748
  self.label_5.setGeometry(QtCore.QRect(200, 155, 161, 16))
@@ -668,7 +760,9 @@ class Ui_MainWindow(object):
668
760
  self.label_12.setObjectName("label_12")
669
761
  self.logOutput_groupBox = QtWidgets.QGroupBox(self.centralwidget)
670
762
  self.logOutput_groupBox.setGeometry(QtCore.QRect(980, 5, 381, 221))
671
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding)
763
+ sizePolicy = QtWidgets.QSizePolicy(
764
+ QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding
765
+ )
672
766
  sizePolicy.setHorizontalStretch(0)
673
767
  sizePolicy.setVerticalStretch(0)
674
768
  sizePolicy.setHeightForWidth(self.logOutput_groupBox.sizePolicy().hasHeightForWidth())
@@ -689,7 +783,9 @@ class Ui_MainWindow(object):
689
783
  self.logOutput.setObjectName("logOutput")
690
784
  self.simfunc_groupBox = QtWidgets.QGroupBox(self.centralwidget)
691
785
  self.simfunc_groupBox.setGeometry(QtCore.QRect(790, 405, 571, 186))
692
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding)
786
+ sizePolicy = QtWidgets.QSizePolicy(
787
+ QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding
788
+ )
693
789
  sizePolicy.setHorizontalStretch(0)
694
790
  sizePolicy.setVerticalStretch(0)
695
791
  sizePolicy.setHeightForWidth(self.simfunc_groupBox.sizePolicy().hasHeightForWidth())
@@ -702,7 +798,9 @@ class Ui_MainWindow(object):
702
798
  self.simfunc_groupBox.setObjectName("simfunc_groupBox")
703
799
  self.simfunc_graphicsView = GraphicsLayoutWidget(self.simfunc_groupBox)
704
800
  self.simfunc_graphicsView.setGeometry(QtCore.QRect(10, 25, 551, 151))
705
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.MinimumExpanding)
801
+ sizePolicy = QtWidgets.QSizePolicy(
802
+ QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.MinimumExpanding
803
+ )
706
804
  sizePolicy.setHorizontalStretch(0)
707
805
  sizePolicy.setVerticalStretch(0)
708
806
  sizePolicy.setHeightForWidth(self.simfunc_graphicsView.sizePolicy().hasHeightForWidth())
@@ -735,15 +833,36 @@ class Ui_MainWindow(object):
735
833
  _translate = QtCore.QCoreApplication.translate
736
834
  MainWindow.setWindowTitle(_translate("MainWindow", "MainWindow"))
737
835
  self.imageData_groupBox.setTitle(_translate("MainWindow", "Image Data"))
738
- self.resetDispLimits_Button.setToolTip(_translate("MainWindow", "Set the display range of the current map to the absolute minimum and maximum"))
836
+ self.resetDispLimits_Button.setToolTip(
837
+ _translate(
838
+ "MainWindow",
839
+ "Set the display range of the current map to the absolute minimum and maximum",
840
+ )
841
+ )
739
842
  self.resetDispLimits_Button.setText(_translate("MainWindow", "Full Range"))
740
- self.resetDispSmart_Button.setToolTip(_translate("MainWindow", "Set the display range of the current map to the robust minimum and maximum"))
843
+ self.resetDispSmart_Button.setToolTip(
844
+ _translate(
845
+ "MainWindow",
846
+ "Set the display range of the current map to the robust minimum and maximum",
847
+ )
848
+ )
741
849
  self.resetDispSmart_Button.setText(_translate("MainWindow", "Smart"))
742
- self.saveDisp_Button.setToolTip(_translate("MainWindow", "Save jpegs of the currently displayed map"))
850
+ self.saveDisp_Button.setToolTip(
851
+ _translate("MainWindow", "Save jpegs of the currently displayed map")
852
+ )
743
853
  self.saveDisp_Button.setText(_translate("MainWindow", "Save"))
744
- self.setMask_Button.setToolTip(_translate("MainWindow", "Right click to select the mask used to display the current map"))
854
+ self.setMask_Button.setToolTip(
855
+ _translate(
856
+ "MainWindow", "Right click to select the mask used to display the current map"
857
+ )
858
+ )
745
859
  self.setMask_Button.setText(_translate("MainWindow", "No mask"))
746
- self.transparency_checkBox.setToolTip(_translate("MainWindow", "With transparency on, map values outside the range limits are not displayed."))
860
+ self.transparency_checkBox.setToolTip(
861
+ _translate(
862
+ "MainWindow",
863
+ "With transparency on, map values outside the range limits are not displayed.",
864
+ )
865
+ )
747
866
  self.transparency_checkBox.setText(_translate("MainWindow", "Transparency"))
748
867
  self.label_2.setText(_translate("MainWindow", "Colormap"))
749
868
  self.gray_radioButton.setText(_translate("MainWindow", "Gray"))
@@ -793,4 +912,6 @@ class Ui_MainWindow(object):
793
912
  self.logOutput_groupBox.setTitle(_translate("MainWindow", "Information"))
794
913
  self.simfunc_groupBox.setTitle(_translate("MainWindow", "Correlation Function"))
795
914
  self.actionQuit.setText(_translate("MainWindow", "Quit"))
915
+
916
+
796
917
  from pyqtgraph import GraphicsLayoutWidget, GraphicsView