rapidtide 3.0.11__py3-none-any.whl → 3.1.1__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (144) hide show
  1. rapidtide/Colortables.py +492 -27
  2. rapidtide/OrthoImageItem.py +1049 -46
  3. rapidtide/RapidtideDataset.py +1533 -86
  4. rapidtide/_version.py +3 -3
  5. rapidtide/calccoherence.py +196 -29
  6. rapidtide/calcnullsimfunc.py +188 -40
  7. rapidtide/calcsimfunc.py +242 -42
  8. rapidtide/correlate.py +1203 -383
  9. rapidtide/data/examples/src/testLD +56 -0
  10. rapidtide/data/examples/src/testalign +1 -1
  11. rapidtide/data/examples/src/testdelayvar +0 -1
  12. rapidtide/data/examples/src/testfmri +53 -3
  13. rapidtide/data/examples/src/testglmfilt +5 -5
  14. rapidtide/data/examples/src/testhappy +29 -7
  15. rapidtide/data/examples/src/testppgproc +17 -0
  16. rapidtide/data/examples/src/testrolloff +11 -0
  17. rapidtide/data/models/model_cnn_pytorch/best_model.pth +0 -0
  18. rapidtide/data/models/model_cnn_pytorch/loss.png +0 -0
  19. rapidtide/data/models/model_cnn_pytorch/loss.txt +1 -0
  20. rapidtide/data/models/model_cnn_pytorch/model.pth +0 -0
  21. rapidtide/data/models/model_cnn_pytorch/model_meta.json +68 -0
  22. rapidtide/decorators.py +91 -0
  23. rapidtide/dlfilter.py +2226 -110
  24. rapidtide/dlfiltertorch.py +4842 -0
  25. rapidtide/externaltools.py +327 -12
  26. rapidtide/fMRIData_class.py +79 -40
  27. rapidtide/filter.py +1899 -810
  28. rapidtide/fit.py +2011 -581
  29. rapidtide/genericmultiproc.py +93 -18
  30. rapidtide/happy_supportfuncs.py +2047 -172
  31. rapidtide/helper_classes.py +584 -43
  32. rapidtide/io.py +2370 -372
  33. rapidtide/linfitfiltpass.py +346 -99
  34. rapidtide/makelaggedtcs.py +210 -24
  35. rapidtide/maskutil.py +448 -62
  36. rapidtide/miscmath.py +827 -121
  37. rapidtide/multiproc.py +210 -22
  38. rapidtide/patchmatch.py +242 -42
  39. rapidtide/peakeval.py +31 -31
  40. rapidtide/ppgproc.py +2203 -0
  41. rapidtide/qualitycheck.py +352 -39
  42. rapidtide/refinedelay.py +431 -57
  43. rapidtide/refineregressor.py +494 -189
  44. rapidtide/resample.py +671 -185
  45. rapidtide/scripts/applyppgproc.py +28 -0
  46. rapidtide/scripts/showxcorr_legacy.py +7 -7
  47. rapidtide/scripts/stupidramtricks.py +15 -17
  48. rapidtide/simFuncClasses.py +1052 -77
  49. rapidtide/simfuncfit.py +269 -69
  50. rapidtide/stats.py +540 -238
  51. rapidtide/tests/happycomp +9 -0
  52. rapidtide/tests/test_cleanregressor.py +1 -2
  53. rapidtide/tests/test_dlfiltertorch.py +627 -0
  54. rapidtide/tests/test_findmaxlag.py +24 -8
  55. rapidtide/tests/test_fullrunhappy_v1.py +0 -2
  56. rapidtide/tests/test_fullrunhappy_v2.py +0 -2
  57. rapidtide/tests/test_fullrunhappy_v3.py +11 -4
  58. rapidtide/tests/test_fullrunhappy_v4.py +10 -2
  59. rapidtide/tests/test_fullrunrapidtide_v7.py +1 -1
  60. rapidtide/tests/test_getparsers.py +11 -3
  61. rapidtide/tests/test_refinedelay.py +0 -1
  62. rapidtide/tests/test_simroundtrip.py +16 -8
  63. rapidtide/tests/test_stcorrelate.py +3 -1
  64. rapidtide/tests/utils.py +9 -8
  65. rapidtide/tidepoolTemplate.py +142 -38
  66. rapidtide/tidepoolTemplate_alt.py +165 -44
  67. rapidtide/tidepoolTemplate_big.py +189 -52
  68. rapidtide/util.py +1217 -118
  69. rapidtide/voxelData.py +684 -37
  70. rapidtide/wiener.py +136 -23
  71. rapidtide/wiener2.py +113 -7
  72. rapidtide/workflows/adjustoffset.py +105 -3
  73. rapidtide/workflows/aligntcs.py +85 -2
  74. rapidtide/workflows/applydlfilter.py +87 -10
  75. rapidtide/workflows/applyppgproc.py +540 -0
  76. rapidtide/workflows/atlasaverage.py +210 -47
  77. rapidtide/workflows/atlastool.py +100 -3
  78. rapidtide/workflows/calcSimFuncMap.py +288 -69
  79. rapidtide/workflows/calctexticc.py +201 -9
  80. rapidtide/workflows/ccorrica.py +101 -6
  81. rapidtide/workflows/cleanregressor.py +165 -31
  82. rapidtide/workflows/delayvar.py +171 -23
  83. rapidtide/workflows/diffrois.py +81 -3
  84. rapidtide/workflows/endtidalproc.py +144 -4
  85. rapidtide/workflows/fdica.py +195 -15
  86. rapidtide/workflows/filtnifti.py +70 -3
  87. rapidtide/workflows/filttc.py +74 -3
  88. rapidtide/workflows/fitSimFuncMap.py +202 -51
  89. rapidtide/workflows/fixtr.py +73 -3
  90. rapidtide/workflows/gmscalc.py +113 -3
  91. rapidtide/workflows/happy.py +801 -199
  92. rapidtide/workflows/happy2std.py +144 -12
  93. rapidtide/workflows/happy_parser.py +163 -23
  94. rapidtide/workflows/histnifti.py +118 -2
  95. rapidtide/workflows/histtc.py +84 -3
  96. rapidtide/workflows/linfitfilt.py +117 -4
  97. rapidtide/workflows/localflow.py +328 -28
  98. rapidtide/workflows/mergequality.py +79 -3
  99. rapidtide/workflows/niftidecomp.py +322 -18
  100. rapidtide/workflows/niftistats.py +174 -4
  101. rapidtide/workflows/pairproc.py +98 -4
  102. rapidtide/workflows/pairwisemergenifti.py +85 -2
  103. rapidtide/workflows/parser_funcs.py +1421 -40
  104. rapidtide/workflows/physiofreq.py +137 -11
  105. rapidtide/workflows/pixelcomp.py +207 -5
  106. rapidtide/workflows/plethquality.py +103 -21
  107. rapidtide/workflows/polyfitim.py +151 -11
  108. rapidtide/workflows/proj2flow.py +75 -2
  109. rapidtide/workflows/rankimage.py +111 -4
  110. rapidtide/workflows/rapidtide.py +368 -76
  111. rapidtide/workflows/rapidtide2std.py +98 -2
  112. rapidtide/workflows/rapidtide_parser.py +109 -9
  113. rapidtide/workflows/refineDelayMap.py +144 -33
  114. rapidtide/workflows/refineRegressor.py +675 -96
  115. rapidtide/workflows/regressfrommaps.py +161 -37
  116. rapidtide/workflows/resamplenifti.py +85 -3
  117. rapidtide/workflows/resampletc.py +91 -3
  118. rapidtide/workflows/retrolagtcs.py +99 -9
  119. rapidtide/workflows/retroregress.py +176 -26
  120. rapidtide/workflows/roisummarize.py +174 -5
  121. rapidtide/workflows/runqualitycheck.py +71 -3
  122. rapidtide/workflows/showarbcorr.py +149 -6
  123. rapidtide/workflows/showhist.py +86 -2
  124. rapidtide/workflows/showstxcorr.py +160 -3
  125. rapidtide/workflows/showtc.py +159 -3
  126. rapidtide/workflows/showxcorrx.py +190 -10
  127. rapidtide/workflows/showxy.py +185 -15
  128. rapidtide/workflows/simdata.py +264 -38
  129. rapidtide/workflows/spatialfit.py +77 -2
  130. rapidtide/workflows/spatialmi.py +250 -27
  131. rapidtide/workflows/spectrogram.py +305 -32
  132. rapidtide/workflows/synthASL.py +154 -3
  133. rapidtide/workflows/tcfrom2col.py +76 -2
  134. rapidtide/workflows/tcfrom3col.py +74 -2
  135. rapidtide/workflows/tidepool.py +2971 -130
  136. rapidtide/workflows/utils.py +19 -14
  137. rapidtide/workflows/utils_doc.py +293 -0
  138. rapidtide/workflows/variabilityizer.py +116 -3
  139. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/METADATA +10 -8
  140. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/RECORD +144 -128
  141. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/entry_points.txt +1 -0
  142. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/WHEEL +0 -0
  143. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/licenses/LICENSE +0 -0
  144. {rapidtide-3.0.11.dist-info → rapidtide-3.1.1.dist-info}/top_level.txt +0 -0
rapidtide/tidepoolTemplate.py CHANGED
@@ -15,7 +15,9 @@ class Ui_MainWindow(object):
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  def setupUi(self, MainWindow):
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  MainWindow.setObjectName("MainWindow")
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  MainWindow.resize(1129, 909)
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- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding)
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+ sizePolicy = QtWidgets.QSizePolicy(
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+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding
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+ )
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  sizePolicy.setHorizontalStretch(1)
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  sizePolicy.setVerticalStretch(1)
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  sizePolicy.setHeightForWidth(MainWindow.sizePolicy().hasHeightForWidth())
@@ -27,7 +29,9 @@ class Ui_MainWindow(object):
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  self.centralwidget.setObjectName("centralwidget")
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  self.logOutput_groupBox = QtWidgets.QGroupBox(self.centralwidget)
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  self.logOutput_groupBox.setGeometry(QtCore.QRect(440, 520, 671, 171))
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- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding)
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+ sizePolicy = QtWidgets.QSizePolicy(
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+ QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding
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+ )
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.logOutput_groupBox.sizePolicy().hasHeightForWidth())
@@ -44,7 +48,9 @@ class Ui_MainWindow(object):
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  self.logOutput.setObjectName("logOutput")
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  self.imageData_groupBox = QtWidgets.QGroupBox(self.centralwidget)
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  self.imageData_groupBox.setGeometry(QtCore.QRect(10, 0, 1100, 312))
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- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Preferred)
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+ sizePolicy = QtWidgets.QSizePolicy(
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+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Preferred
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+ )
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.imageData_groupBox.sizePolicy().hasHeightForWidth())
@@ -60,11 +66,15 @@ class Ui_MainWindow(object):
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  self.layoutWidget.setGeometry(QtCore.QRect(10, 20, 1074, 286))
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  self.layoutWidget.setObjectName("layoutWidget")
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  self.largeimage_horizontalLayout = QtWidgets.QHBoxLayout(self.layoutWidget)
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- self.largeimage_horizontalLayout.setSizeConstraint(QtCore.Qt.QLayout.SizeConstraint.SetNoConstraint)
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+ self.largeimage_horizontalLayout.setSizeConstraint(
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+ QtCore.Qt.QLayout.SizeConstraint.SetNoConstraint
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+ )
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  self.largeimage_horizontalLayout.setContentsMargins(0, 0, 0, 0)
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  self.largeimage_horizontalLayout.setObjectName("largeimage_horizontalLayout")
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  self.main_graphicsView_ax = GraphicsLayoutWidget(self.layoutWidget)
67
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding)
75
+ sizePolicy = QtWidgets.QSizePolicy(
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+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding
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+ )
68
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.main_graphicsView_ax.sizePolicy().hasHeightForWidth())
@@ -77,7 +87,9 @@ class Ui_MainWindow(object):
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  self.main_graphicsView_ax.setObjectName("main_graphicsView_ax")
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  self.largeimage_horizontalLayout.addWidget(self.main_graphicsView_ax)
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  self.main_graphicsView_cor = GraphicsLayoutWidget(self.layoutWidget)
80
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding)
90
+ sizePolicy = QtWidgets.QSizePolicy(
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+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding
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+ )
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
83
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  sizePolicy.setHeightForWidth(self.main_graphicsView_cor.sizePolicy().hasHeightForWidth())
@@ -90,7 +102,9 @@ class Ui_MainWindow(object):
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  self.main_graphicsView_cor.setObjectName("main_graphicsView_cor")
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  self.largeimage_horizontalLayout.addWidget(self.main_graphicsView_cor)
92
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  self.main_graphicsView_sag = GraphicsLayoutWidget(self.layoutWidget)
93
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding)
105
+ sizePolicy = QtWidgets.QSizePolicy(
106
+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding
107
+ )
94
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  sizePolicy.setHorizontalStretch(0)
95
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  sizePolicy.setVerticalStretch(0)
96
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  sizePolicy.setHeightForWidth(self.main_graphicsView_sag.sizePolicy().hasHeightForWidth())
@@ -103,7 +117,9 @@ class Ui_MainWindow(object):
103
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  self.main_graphicsView_sag.setObjectName("main_graphicsView_sag")
104
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  self.largeimage_horizontalLayout.addWidget(self.main_graphicsView_sag)
105
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  self.graphicsView_colorbar = GraphicsView(self.layoutWidget)
106
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding)
120
+ sizePolicy = QtWidgets.QSizePolicy(
121
+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.MinimumExpanding
122
+ )
107
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  sizePolicy.setHorizontalStretch(0)
108
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  sizePolicy.setVerticalStretch(0)
109
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  sizePolicy.setHeightForWidth(self.graphicsView_colorbar.sizePolicy().hasHeightForWidth())
@@ -119,11 +135,17 @@ class Ui_MainWindow(object):
119
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  self.verticalLayout_3.setSpacing(0)
120
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  self.verticalLayout_3.setObjectName("verticalLayout_3")
121
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  self.dispmax_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.layoutWidget)
122
- self.dispmax_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
138
+ self.dispmax_doubleSpinBox.setAlignment(
139
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
140
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
141
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
142
+ )
123
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  self.dispmax_doubleSpinBox.setDecimals(3)
124
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  self.dispmax_doubleSpinBox.setObjectName("dispmax_doubleSpinBox")
125
145
  self.verticalLayout_3.addWidget(self.dispmax_doubleSpinBox)
126
- spacerItem = QtWidgets.QSpacerItem(20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding)
146
+ spacerItem = QtWidgets.QSpacerItem(
147
+ 20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding
148
+ )
127
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  self.verticalLayout_3.addItem(spacerItem)
128
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  self.resetDispLimits_Button = QtWidgets.QPushButton(self.layoutWidget)
129
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  self.resetDispLimits_Button.setObjectName("resetDispLimits_Button")
@@ -137,14 +159,20 @@ class Ui_MainWindow(object):
137
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  self.setMask_Button = QtWidgets.QPushButton(self.layoutWidget)
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  self.setMask_Button.setObjectName("setMask_Button")
139
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  self.verticalLayout_3.addWidget(self.setMask_Button)
140
- spacerItem1 = QtWidgets.QSpacerItem(20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding)
162
+ spacerItem1 = QtWidgets.QSpacerItem(
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+ 20, 40, QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Expanding
164
+ )
141
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  self.verticalLayout_3.addItem(spacerItem1)
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  self.transparency_checkBox = QtWidgets.QCheckBox(self.layoutWidget)
143
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  self.transparency_checkBox.setChecked(False)
144
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  self.transparency_checkBox.setObjectName("transparency_checkBox")
145
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  self.verticalLayout_3.addWidget(self.transparency_checkBox)
146
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  self.dispmin_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.layoutWidget)
147
- self.dispmin_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
171
+ self.dispmin_doubleSpinBox.setAlignment(
172
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
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+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
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+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
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+ )
148
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  self.dispmin_doubleSpinBox.setDecimals(3)
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  self.dispmin_doubleSpinBox.setObjectName("dispmin_doubleSpinBox")
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  self.verticalLayout_3.addWidget(self.dispmin_doubleSpinBox)
@@ -260,7 +288,9 @@ class Ui_MainWindow(object):
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  self.largeimage_horizontalLayout.addLayout(self.verticalLayout_2)
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  self.overlays_groupBox = QtWidgets.QGroupBox(self.centralwidget)
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  self.overlays_groupBox.setGeometry(QtCore.QRect(10, 315, 421, 376))
263
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred)
291
+ sizePolicy = QtWidgets.QSizePolicy(
292
+ QtWidgets.QSizePolicy.Minimum, QtWidgets.QSizePolicy.Preferred
293
+ )
264
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.overlays_groupBox.sizePolicy().hasHeightForWidth())
@@ -276,7 +306,9 @@ class Ui_MainWindow(object):
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  self.overlay_radioButton_05.setObjectName("overlay_radioButton_05")
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  self.overlay_graphicsView_01 = GraphicsLayoutWidget(self.overlays_groupBox)
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  self.overlay_graphicsView_01.setGeometry(QtCore.QRect(10, 30, 198, 64))
279
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
309
+ sizePolicy = QtWidgets.QSizePolicy(
310
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
311
+ )
280
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.overlay_graphicsView_01.sizePolicy().hasHeightForWidth())
@@ -334,7 +366,9 @@ class Ui_MainWindow(object):
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  self.overlay_radioButton_08.setObjectName("overlay_radioButton_08")
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  self.overlay_graphicsView_04 = GraphicsLayoutWidget(self.overlays_groupBox)
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  self.overlay_graphicsView_04.setGeometry(QtCore.QRect(10, 115, 192, 64))
337
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
369
+ sizePolicy = QtWidgets.QSizePolicy(
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+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
371
+ )
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.overlay_graphicsView_04.sizePolicy().hasHeightForWidth())
@@ -346,7 +380,9 @@ class Ui_MainWindow(object):
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  self.overlay_graphicsView_04.setObjectName("overlay_graphicsView_04")
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  self.overlay_graphicsView_06 = GraphicsLayoutWidget(self.overlays_groupBox)
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  self.overlay_graphicsView_06.setGeometry(QtCore.QRect(220, 200, 192, 64))
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- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
383
+ sizePolicy = QtWidgets.QSizePolicy(
384
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
385
+ )
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.overlay_graphicsView_06.sizePolicy().hasHeightForWidth())
@@ -358,7 +394,9 @@ class Ui_MainWindow(object):
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  self.overlay_graphicsView_06.setObjectName("overlay_graphicsView_06")
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  self.overlay_graphicsView_03 = GraphicsLayoutWidget(self.overlays_groupBox)
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  self.overlay_graphicsView_03.setGeometry(QtCore.QRect(220, 115, 192, 64))
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- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
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+ sizePolicy = QtWidgets.QSizePolicy(
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+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
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+ )
362
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.overlay_graphicsView_03.sizePolicy().hasHeightForWidth())
@@ -370,7 +408,9 @@ class Ui_MainWindow(object):
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  self.overlay_graphicsView_03.setObjectName("overlay_graphicsView_03")
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  self.overlay_graphicsView_08 = GraphicsLayoutWidget(self.overlays_groupBox)
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  self.overlay_graphicsView_08.setGeometry(QtCore.QRect(220, 285, 192, 64))
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- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
411
+ sizePolicy = QtWidgets.QSizePolicy(
412
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
413
+ )
374
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  sizePolicy.setHorizontalStretch(0)
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  sizePolicy.setVerticalStretch(0)
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  sizePolicy.setHeightForWidth(self.overlay_graphicsView_08.sizePolicy().hasHeightForWidth())
@@ -382,7 +422,9 @@ class Ui_MainWindow(object):
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  self.overlay_graphicsView_08.setObjectName("overlay_graphicsView_08")
383
423
  self.overlay_graphicsView_05 = GraphicsLayoutWidget(self.overlays_groupBox)
384
424
  self.overlay_graphicsView_05.setGeometry(QtCore.QRect(10, 200, 192, 64))
385
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
425
+ sizePolicy = QtWidgets.QSizePolicy(
426
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
427
+ )
386
428
  sizePolicy.setHorizontalStretch(0)
387
429
  sizePolicy.setVerticalStretch(0)
388
430
  sizePolicy.setHeightForWidth(self.overlay_graphicsView_05.sizePolicy().hasHeightForWidth())
@@ -394,7 +436,9 @@ class Ui_MainWindow(object):
394
436
  self.overlay_graphicsView_05.setObjectName("overlay_graphicsView_05")
395
437
  self.overlay_graphicsView_02 = GraphicsLayoutWidget(self.overlays_groupBox)
396
438
  self.overlay_graphicsView_02.setGeometry(QtCore.QRect(220, 30, 192, 64))
397
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
439
+ sizePolicy = QtWidgets.QSizePolicy(
440
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
441
+ )
398
442
  sizePolicy.setHorizontalStretch(0)
399
443
  sizePolicy.setVerticalStretch(0)
400
444
  sizePolicy.setHeightForWidth(self.overlay_graphicsView_02.sizePolicy().hasHeightForWidth())
@@ -406,7 +450,9 @@ class Ui_MainWindow(object):
406
450
  self.overlay_graphicsView_02.setObjectName("overlay_graphicsView_02")
407
451
  self.overlay_graphicsView_07 = GraphicsLayoutWidget(self.overlays_groupBox)
408
452
  self.overlay_graphicsView_07.setGeometry(QtCore.QRect(10, 285, 192, 64))
409
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred)
453
+ sizePolicy = QtWidgets.QSizePolicy(
454
+ QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Preferred
455
+ )
410
456
  sizePolicy.setHorizontalStretch(0)
411
457
  sizePolicy.setVerticalStretch(0)
412
458
  sizePolicy.setHeightForWidth(self.overlay_graphicsView_07.sizePolicy().hasHeightForWidth())
@@ -435,7 +481,9 @@ class Ui_MainWindow(object):
435
481
  self.overlay_graphicsView_07.raise_()
436
482
  self.histogram_groupBox = QtWidgets.QGroupBox(self.centralwidget)
437
483
  self.histogram_groupBox.setGeometry(QtCore.QRect(440, 315, 381, 201))
438
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding)
484
+ sizePolicy = QtWidgets.QSizePolicy(
485
+ QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding
486
+ )
439
487
  sizePolicy.setHorizontalStretch(0)
440
488
  sizePolicy.setVerticalStretch(0)
441
489
  sizePolicy.setHeightForWidth(self.histogram_groupBox.sizePolicy().hasHeightForWidth())
@@ -445,7 +493,9 @@ class Ui_MainWindow(object):
445
493
  self.histogram_groupBox.setObjectName("histogram_groupBox")
446
494
  self.histogram_graphicsView = GraphicsLayoutWidget(self.histogram_groupBox)
447
495
  self.histogram_graphicsView.setGeometry(QtCore.QRect(10, 30, 361, 161))
448
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.MinimumExpanding)
496
+ sizePolicy = QtWidgets.QSizePolicy(
497
+ QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.MinimumExpanding
498
+ )
449
499
  sizePolicy.setHorizontalStretch(0)
450
500
  sizePolicy.setVerticalStretch(0)
451
501
  sizePolicy.setHeightForWidth(self.histogram_graphicsView.sizePolicy().hasHeightForWidth())
@@ -461,7 +511,11 @@ class Ui_MainWindow(object):
461
511
  self.label_4.setObjectName("label_4")
462
512
  self.pixnumX_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
463
513
  self.pixnumX_doubleSpinBox.setGeometry(QtCore.QRect(30, 30, 67, 24))
464
- self.pixnumX_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
514
+ self.pixnumX_doubleSpinBox.setAlignment(
515
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
516
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
517
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
518
+ )
465
519
  self.pixnumX_doubleSpinBox.setDecimals(0)
466
520
  self.pixnumX_doubleSpinBox.setObjectName("pixnumX_doubleSpinBox")
467
521
  self.label_7 = QtWidgets.QLabel(self.mainimagedata_groupBox)
@@ -472,7 +526,11 @@ class Ui_MainWindow(object):
472
526
  self.label_7.setObjectName("label_7")
473
527
  self.coordX_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
474
528
  self.coordX_doubleSpinBox.setGeometry(QtCore.QRect(100, 30, 67, 24))
475
- self.coordX_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
529
+ self.coordX_doubleSpinBox.setAlignment(
530
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
531
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
532
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
533
+ )
476
534
  self.coordX_doubleSpinBox.setDecimals(3)
477
535
  self.coordX_doubleSpinBox.setObjectName("coordX_doubleSpinBox")
478
536
  self.label_9 = QtWidgets.QLabel(self.mainimagedata_groupBox)
@@ -483,22 +541,38 @@ class Ui_MainWindow(object):
483
541
  self.label_9.setObjectName("label_9")
484
542
  self.pixnumY_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
485
543
  self.pixnumY_doubleSpinBox.setGeometry(QtCore.QRect(30, 55, 67, 24))
486
- self.pixnumY_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
544
+ self.pixnumY_doubleSpinBox.setAlignment(
545
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
546
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
547
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
548
+ )
487
549
  self.pixnumY_doubleSpinBox.setDecimals(0)
488
550
  self.pixnumY_doubleSpinBox.setObjectName("pixnumY_doubleSpinBox")
489
551
  self.coordY_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
490
552
  self.coordY_doubleSpinBox.setGeometry(QtCore.QRect(100, 55, 67, 24))
491
- self.coordY_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
553
+ self.coordY_doubleSpinBox.setAlignment(
554
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
555
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
556
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
557
+ )
492
558
  self.coordY_doubleSpinBox.setDecimals(3)
493
559
  self.coordY_doubleSpinBox.setObjectName("coordY_doubleSpinBox")
494
560
  self.pixnumZ_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
495
561
  self.pixnumZ_doubleSpinBox.setGeometry(QtCore.QRect(30, 80, 67, 24))
496
- self.pixnumZ_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
562
+ self.pixnumZ_doubleSpinBox.setAlignment(
563
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
564
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
565
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
566
+ )
497
567
  self.pixnumZ_doubleSpinBox.setDecimals(0)
498
568
  self.pixnumZ_doubleSpinBox.setObjectName("pixnumZ_doubleSpinBox")
499
569
  self.coordZ_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
500
570
  self.coordZ_doubleSpinBox.setGeometry(QtCore.QRect(100, 80, 67, 24))
501
- self.coordZ_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
571
+ self.coordZ_doubleSpinBox.setAlignment(
572
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
573
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
574
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
575
+ )
502
576
  self.coordZ_doubleSpinBox.setDecimals(3)
503
577
  self.coordZ_doubleSpinBox.setObjectName("coordZ_doubleSpinBox")
504
578
  self.label_6 = QtWidgets.QLabel(self.mainimagedata_groupBox)
@@ -509,12 +583,20 @@ class Ui_MainWindow(object):
509
583
  self.label_8.setObjectName("label_8")
510
584
  self.coordT_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
511
585
  self.coordT_doubleSpinBox.setGeometry(QtCore.QRect(100, 130, 67, 24))
512
- self.coordT_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
586
+ self.coordT_doubleSpinBox.setAlignment(
587
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
588
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
589
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
590
+ )
513
591
  self.coordT_doubleSpinBox.setDecimals(3)
514
592
  self.coordT_doubleSpinBox.setObjectName("coordT_doubleSpinBox")
515
593
  self.pixnumT_doubleSpinBox = QtWidgets.QDoubleSpinBox(self.mainimagedata_groupBox)
516
594
  self.pixnumT_doubleSpinBox.setGeometry(QtCore.QRect(30, 130, 67, 24))
517
- self.pixnumT_doubleSpinBox.setAlignment(QtCore.Qt.Qt.AlignmentFlag.AlignRight|QtCore.Qt.Qt.AlignmentFlag.AlignTrailing|QtCore.Qt.Qt.AlignmentFlag.AlignVCenter)
595
+ self.pixnumT_doubleSpinBox.setAlignment(
596
+ QtCore.Qt.Qt.AlignmentFlag.AlignRight
597
+ | QtCore.Qt.Qt.AlignmentFlag.AlignTrailing
598
+ | QtCore.Qt.Qt.AlignmentFlag.AlignVCenter
599
+ )
518
600
  self.pixnumT_doubleSpinBox.setDecimals(0)
519
601
  self.pixnumT_doubleSpinBox.setObjectName("pixnumT_doubleSpinBox")
520
602
  self.label_3 = QtWidgets.QLabel(self.mainimagedata_groupBox)
@@ -541,7 +623,9 @@ class Ui_MainWindow(object):
541
623
  self.runMovieButton.setObjectName("runMovieButton")
542
624
  self.regressor_groupBox = QtWidgets.QGroupBox(self.centralwidget)
543
625
  self.regressor_groupBox.setGeometry(QtCore.QRect(10, 690, 1101, 181))
544
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding)
626
+ sizePolicy = QtWidgets.QSizePolicy(
627
+ QtWidgets.QSizePolicy.Expanding, QtWidgets.QSizePolicy.Expanding
628
+ )
545
629
  sizePolicy.setHorizontalStretch(0)
546
630
  sizePolicy.setVerticalStretch(0)
547
631
  sizePolicy.setHeightForWidth(self.regressor_groupBox.sizePolicy().hasHeightForWidth())
@@ -551,10 +635,14 @@ class Ui_MainWindow(object):
551
635
  self.regressor_groupBox.setObjectName("regressor_groupBox")
552
636
  self.regressorspectrum_graphicsView = GraphicsLayoutWidget(self.regressor_groupBox)
553
637
  self.regressorspectrum_graphicsView.setGeometry(QtCore.QRect(490, 23, 472, 131))
554
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Preferred)
638
+ sizePolicy = QtWidgets.QSizePolicy(
639
+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Preferred
640
+ )
555
641
  sizePolicy.setHorizontalStretch(0)
556
642
  sizePolicy.setVerticalStretch(0)
557
- sizePolicy.setHeightForWidth(self.regressorspectrum_graphicsView.sizePolicy().hasHeightForWidth())
643
+ sizePolicy.setHeightForWidth(
644
+ self.regressorspectrum_graphicsView.sizePolicy().hasHeightForWidth()
645
+ )
558
646
  self.regressorspectrum_graphicsView.setSizePolicy(sizePolicy)
559
647
  self.regressorspectrum_graphicsView.setMinimumSize(QtCore.QSize(100, 100))
560
648
  self.regressorspectrum_graphicsView.setMaximumSize(QtCore.QSize(1000, 1000))
@@ -563,10 +651,14 @@ class Ui_MainWindow(object):
563
651
  self.regressortimecourse_graphicsView = GraphicsLayoutWidget(self.regressor_groupBox)
564
652
  self.regressortimecourse_graphicsView.setEnabled(True)
565
653
  self.regressortimecourse_graphicsView.setGeometry(QtCore.QRect(10, 23, 472, 131))
566
- sizePolicy = QtWidgets.QSizePolicy(QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Preferred)
654
+ sizePolicy = QtWidgets.QSizePolicy(
655
+ QtWidgets.QSizePolicy.MinimumExpanding, QtWidgets.QSizePolicy.Preferred
656
+ )
567
657
  sizePolicy.setHorizontalStretch(0)
568
658
  sizePolicy.setVerticalStretch(0)
569
- sizePolicy.setHeightForWidth(self.regressortimecourse_graphicsView.sizePolicy().hasHeightForWidth())
659
+ sizePolicy.setHeightForWidth(
660
+ self.regressortimecourse_graphicsView.sizePolicy().hasHeightForWidth()
661
+ )
570
662
  self.regressortimecourse_graphicsView.setSizePolicy(sizePolicy)
571
663
  self.regressortimecourse_graphicsView.setMinimumSize(QtCore.QSize(100, 100))
572
664
  self.regressortimecourse_graphicsView.setMaximumSize(QtCore.QSize(1000, 1000))
@@ -628,12 +720,22 @@ class Ui_MainWindow(object):
628
720
  MainWindow.setWindowTitle(_translate("MainWindow", "MainWindow"))
629
721
  self.logOutput_groupBox.setTitle(_translate("MainWindow", "Information"))
630
722
  self.imageData_groupBox.setTitle(_translate("MainWindow", "Image Data"))
631
- self.label.setText(_translate("MainWindow", "Click in image to position ROI. Drag right or left to increase or decrease the ROI size"))
723
+ self.label.setText(
724
+ _translate(
725
+ "MainWindow",
726
+ "Click in image to position ROI. Drag right or left to increase or decrease the ROI size",
727
+ )
728
+ )
632
729
  self.resetDispLimits_Button.setText(_translate("MainWindow", "Full Range"))
633
730
  self.resetDispSmart_Button.setText(_translate("MainWindow", "Smart"))
634
731
  self.saveDisp_Button.setText(_translate("MainWindow", "Save"))
635
732
  self.setMask_Button.setText(_translate("MainWindow", "No mask"))
636
- self.transparency_checkBox.setToolTip(_translate("MainWindow", "With transparency on, map values outside the range limits are not displayed."))
733
+ self.transparency_checkBox.setToolTip(
734
+ _translate(
735
+ "MainWindow",
736
+ "With transparency on, map values outside the range limits are not displayed.",
737
+ )
738
+ )
637
739
  self.transparency_checkBox.setText(_translate("MainWindow", "Transparency"))
638
740
  self.label_2.setText(_translate("MainWindow", "Colormap"))
639
741
  self.gray_radioButton.setText(_translate("MainWindow", "Gray"))
@@ -681,4 +783,6 @@ class Ui_MainWindow(object):
681
783
  self.label_5.setText(_translate("MainWindow", "Timecourse (seconds)"))
682
784
  self.label_12.setText(_translate("MainWindow", "Power spectrum (Hz)"))
683
785
  self.actionQuit.setText(_translate("MainWindow", "Quit"))
786
+
787
+
684
788
  from pyqtgraph import GraphicsLayoutWidget, GraphicsView