pytme 0.2.3__cp311-cp311-macosx_14_0_arm64.whl → 0.2.5__cp311-cp311-macosx_14_0_arm64.whl

tests/test_analyzer.py

@@ -0,0 +1,310 @@
+from tempfile import mkstemp
+
+import pytest
+import numpy as np
+
+from tme.backends import backend as be
+from tme.analyzer import (
+    MaxScoreOverRotations,
+    PeakCaller,
+    PeakCallerSort,
+    PeakCallerMaximumFilter,
+    PeakCallerFast,
+    PeakCallerRecursiveMasking,
+    PeakCallerScipy,
+    PeakClustering,
+    MemmapHandler,
+)
+
+
+PEAK_CALLER_CHILDREN = [
+    PeakCallerSort,
+    PeakCallerMaximumFilter,
+    PeakCallerFast,
+    PeakCallerRecursiveMasking,
+    PeakCallerScipy,
+    PeakClustering,
+]
+
+
+class TestPeakCallers:
+    def setup_method(self):
+        self.number_of_peaks = 100
+        self.min_distance = 5
+        self.data = np.random.rand(100, 100, 100)
+        self.rotation_matrix = np.eye(3)
+
+    @pytest.mark.parametrize("peak_caller", PEAK_CALLER_CHILDREN)
+    def test_initialization(self, peak_caller):
+        _ = peak_caller(number_of_peaks=100, min_distance=5)
+
+    def test_initialization_error(self):
+        with pytest.raises(TypeError):
+            _ = PeakCaller(number_of_peaks=100, min_distance=5)
+
+    @pytest.mark.parametrize("peak_caller", PEAK_CALLER_CHILDREN)
+    def test_initialization_error_parameter(self, peak_caller):
+        with pytest.raises(ValueError):
+            _ = peak_caller(number_of_peaks=0, min_distance=5)
+        with pytest.raises(ValueError):
+            _ = peak_caller(number_of_peaks=-1, min_distance=5)
+        with pytest.raises(ValueError):
+            _ = peak_caller(number_of_peaks=-1, min_distance=-1)
+
+    @pytest.mark.parametrize("peak_caller", PEAK_CALLER_CHILDREN)
+    @pytest.mark.parametrize("number_of_peaks", (1, 100))
+    @pytest.mark.parametrize("minimum_score", (None, 0.5))
+    def test__call__(self, peak_caller, number_of_peaks, minimum_score):
+        peak_caller = peak_caller(
+            number_of_peaks=number_of_peaks,
+            min_distance=self.min_distance,
+            minimum_score=minimum_score,
+        )
+        peak_caller(
+            self.data.copy(),
+            rotation_matrix=self.rotation_matrix,
+        )
+        candidates = tuple(peak_caller)
+        if minimum_score is None:
+            assert len(candidates[0] <= number_of_peaks)
+        else:
+            peaks = candidates[0].astype(int)
+            print(self.data[tuple(peaks.T)])
+            assert np.all(self.data[tuple(peaks.T)] >= minimum_score)
+
+    @pytest.mark.parametrize("peak_caller", PEAK_CALLER_CHILDREN)
+    @pytest.mark.parametrize("number_of_peaks", (1, 100))
+    def test_merge(self, peak_caller, number_of_peaks):
+        peak_caller1 = peak_caller(
+            number_of_peaks=number_of_peaks, min_distance=self.min_distance
+        )
+        peak_caller1(self.data, rotation_matrix=self.rotation_matrix)
+
+        peak_caller2 = peak_caller(
+            number_of_peaks=number_of_peaks, min_distance=self.min_distance
+        )
+        peak_caller2(self.data, rotation_matrix=self.rotation_matrix)
+
+        parameters = [tuple(peak_caller1), tuple(peak_caller2)]
+
+        result = tuple(
+            peak_caller.merge(
+                candidates=parameters,
+                number_of_peaks=number_of_peaks,
+                min_distance=self.min_distance,
+            )
+        )
+        assert [len(res) == 2 for res in result]
+
+
+class TestRecursiveMasking:
+    def setup_method(self):
+        self.number_of_peaks = 100
+        self.min_distance = 5
+        self.data = np.random.rand(100, 100, 100)
+        self.rotation_matrix = np.eye(3)
+        self.mask = np.random.rand(20, 20, 20)
+        self.rotation_space = np.zeros_like(self.data)
+        self.rotation_mapping = {0: (0, 0, 0)}
+
+    @pytest.mark.parametrize("number_of_peaks", (1, 100))
+    @pytest.mark.parametrize("compute_rotation", (True, False))
+    @pytest.mark.parametrize("minimum_score", (None, 0.5))
+    def test__call__(self, number_of_peaks, compute_rotation, minimum_score):
+        peak_caller = PeakCallerRecursiveMasking(
+            number_of_peaks=number_of_peaks, min_distance=self.min_distance
+        )
+        rotation_space, rotation_mapping = None, None
+        if compute_rotation:
+            rotation_space = self.rotation_space
+            rotation_mapping = self.rotation_mapping
+
+        peak_caller(
+            self.data.copy(),
+            rotation_matrix=self.rotation_matrix,
+            mask=self.mask,
+            rotation_space=rotation_space,
+            rotation_mapping=rotation_mapping,
+        )
+
+        candidates = tuple(peak_caller)
+        if minimum_score is None:
+            assert len(candidates[0] <= number_of_peaks)
+        else:
+            peaks = candidates[0].astype(int)
+            assert np.all(self.data[tuple(peaks.T)] >= minimum_score)
+
+
+class TestMaxScoreOverRotations:
+    def setup_method(self):
+        self.number_of_peaks = 100
+        self.min_distance = 5
+        self.data = np.random.rand(100, 100, 100)
+        self.rotation_matrix = np.eye(3)
+
+    def test_initialization(self):
+        _ = MaxScoreOverRotations(
+            shape=self.data.shape,
+            translation_offset=np.zeros(self.data.ndim, dtype=int),
+        )
+        _ = MaxScoreOverRotations(
+            scores=self.data,
+            rotations=self.data,
+            translation_offset=np.zeros(self.data.ndim, dtype=int),
+        )
+
+    @pytest.mark.parametrize("use_memmap", [False, True])
+    def test__iter__(self, use_memmap: bool):
+        score_analyzer = MaxScoreOverRotations(
+            shape=self.data.shape,
+            use_memmap=use_memmap,
+        )
+        score_analyzer(self.data, rotation_matrix=self.rotation_matrix)
+        res = tuple(score_analyzer)
+        assert np.allclose(res[0].shape, self.data.shape)
+        assert res[0].dtype == be._float_dtype
+        assert res[1].size == self.data.ndim
+        assert np.allclose(res[2].shape, self.data.shape)
+        assert len(res) == 4
+
+    @pytest.mark.parametrize("use_memmap", [False, True])
+    @pytest.mark.parametrize("score_threshold", [0, 1e10, -1e10])
+    def test__call__(self, use_memmap: bool, score_threshold: float):
+        score_analyzer = MaxScoreOverRotations(
+            shape=self.data.shape,
+            score_threshold=score_threshold,
+            translation_offset=np.zeros(self.data.ndim, dtype=int),
+            use_memmap=use_memmap,
+        )
+        score_analyzer(self.data, rotation_matrix=self.rotation_matrix)
+
+        data2 = self.data * 2
+        score_analyzer(data2, rotation_matrix=self.rotation_matrix)
+        scores, translation_offset, rotations, mapping = tuple(score_analyzer)
+        assert np.all(scores >= score_threshold)
+        max_scores = np.maximum(self.data, data2)
+        max_scores = np.maximum(max_scores, score_threshold)
+        assert np.allclose(scores, max_scores)
+
+    @pytest.mark.parametrize("use_memmap", [False, True])
+    @pytest.mark.parametrize("score_threshold", [0, 1e10, -1e10])
+    def test_merge(self, use_memmap: bool, score_threshold: float):
+        score_analyzer = MaxScoreOverRotations(
+            shape=self.data.shape,
+            score_threshold=score_threshold,
+            translation_offset=np.zeros(self.data.ndim, dtype=int),
+            use_memmap=use_memmap,
+        )
+        score_analyzer(self.data, rotation_matrix=self.rotation_matrix)
+
+        data2 = self.data * 2
+        score_analyzer2 = MaxScoreOverRotations(
+            shape=self.data.shape,
+            score_threshold=score_threshold,
+            translation_offset=np.zeros(self.data.ndim, dtype=int),
+            use_memmap=use_memmap,
+        )
+        score_analyzer2(data2, rotation_matrix=self.rotation_matrix)
+
+        parameters = [tuple(score_analyzer), tuple(score_analyzer2)]
+
+        ret = MaxScoreOverRotations.merge(
+            parameters, use_memmap=use_memmap, score_threshold=score_threshold
+        )
+        scores, translation, rotations, mapping = ret
+        assert np.all(scores >= score_threshold)
+        max_scores = np.maximum(self.data, data2)
+        max_scores = np.maximum(max_scores, score_threshold)
+        assert np.allclose(scores, max_scores)
+
+
+class TestMemmapHandler:
+    def setup_method(self):
+        self.number_of_peaks = 100
+        self.min_distance = 5
+        self.data = np.random.rand(100, 100, 100)
+        self.indices = tuple(np.indices(self.data.shape))
+
+        self.rotation_matrix = np.eye(3)
+        rotation_matrix2 = np.eye(3)
+        rotation_matrix2[0, 0] = -1
+
+        rotation_matrix = "_".join(self.rotation_matrix.ravel().astype(str))
+        rotation_matrix2 = "_".join(rotation_matrix2.ravel().astype(str))
+
+        self.path_translation = {
+            rotation_matrix: mkstemp()[1],
+            rotation_matrix2: mkstemp()[1],
+        }
+
+    def test_initialization(self):
+        _ = MemmapHandler(
+            path_translation=self.path_translation,
+            shape=self.data.shape,
+            dtype=self.data.dtype,
+            indices=self.indices,
+        )
+
+    def test__call__(self):
+        score_analyzer = MemmapHandler(
+            path_translation=self.path_translation,
+            shape=self.data.shape,
+            dtype=self.data.dtype,
+            indices=self.indices,
+        )
+        score_analyzer(self.data, rotation_matrix=self.rotation_matrix)
+        rotation_filepath = score_analyzer._rotation_matrix_to_filepath(
+            rotation_matrix=self.rotation_matrix
+        )
+        array = np.memmap(
+            rotation_filepath,
+            mode="r+",
+            shape=score_analyzer.shape,
+            dtype=score_analyzer.dtype,
+        )
+        assert np.allclose(array, self.data)
+
+    def test__iter__(self):
+        score_analyzer = MemmapHandler(
+            path_translation=self.path_translation,
+            shape=self.data.shape,
+            dtype=self.data.dtype,
+            indices=self.indices,
+        )
+        res = tuple(score_analyzer)
+        assert res == (None,)
+
+    def test_merge(self):
+        score_analyzer = MemmapHandler(
+            path_translation=self.path_translation,
+            shape=self.data.shape,
+            dtype=self.data.dtype,
+            indices=self.indices,
+        )
+        res = MemmapHandler.merge(score_analyzer)
+        assert res is None
+
+    def test_update_indices(self):
+        score_analyzer = MemmapHandler(
+            path_translation=self.path_translation,
+            shape=self.data.shape,
+            dtype=self.data.dtype,
+            indices=self.indices,
+        )
+        new_indices = np.random.rand(3)
+        score_analyzer.update_indices(new_indices)
+        assert np.allclose(score_analyzer._indices, new_indices)
+
+    def test__rotation_matrix_to_filepath(self):
+        score_analyzer = MemmapHandler(
+            path_translation=self.path_translation,
+            shape=self.data.shape,
+            dtype=self.data.dtype,
+            indices=self.indices,
+        )
+
+        rotation_matrix = list(self.path_translation.keys())[0]
+        rotation_filepath = score_analyzer._rotation_matrix_to_filepath(
+            rotation_matrix=self.rotation_matrix
+        )
+        assert rotation_filepath == self.path_translation.get(rotation_matrix)

tests/test_backends.py

@@ -0,0 +1,375 @@
+import pytest
+import numpy as np
+
+from multiprocessing.managers import SharedMemoryManager
+
+from tme.backends import MatchingBackend, NumpyFFTWBackend, BackendManager, backend
+
+BACKENDS_TO_TEST = []
+for backend_class in backend._BACKEND_REGISTRY.values():
+    try:
+        BACKENDS_TO_TEST.append(backend_class(device="cpu"))
+    except ImportError:
+        print(f"Couldn't import {backend_class}. Skipping...")
+
+METHODS_TO_TEST = MatchingBackend.__abstractmethods__
+
+
+class TestBackendManager:
+    def setup_method(self):
+        self.manager = BackendManager()
+
+    def test_initialization(self):
+        manager = BackendManager()
+        backend_name = manager._backend_name
+        assert f"<BackendManager: using {backend_name}>" == str(manager)
+
+    def test_dir(self):
+        _ = dir(self.manager)
+        for method in METHODS_TO_TEST:
+            assert hasattr(self.manager, method)
+
+    def test_add_backend(self):
+        self.manager.add_backend(backend_name="test", backend_class=NumpyFFTWBackend)
+
+    def test_add_backend_error(self):
+        class _Bar:
+            def __init__(self):
+                pass
+
+        with pytest.raises(ValueError):
+            self.manager.add_backend(backend_name="test", backend_class=_Bar)
+
+    def test_change_backend_error(self):
+        with pytest.raises(NotImplementedError):
+            self.manager.change_backend(backend_name=None)
+
+    def test_available_backends(self):
+        available = self.manager.available_backends()
+        assert isinstance(available, list)
+        for be in available:
+            assert be in self.manager._BACKEND_REGISTRY
+
+
+class TestBackends:
+    def setup_method(self):
+        self.backend = NumpyFFTWBackend()
+        self.x1 = np.random.rand(30, 30).astype(np.float32)
+        self.x2 = np.random.rand(30, 30).astype(np.float32)
+
+    def teardown_method(self):
+        self.backend = None
+
+    def test_initialization_errors(self):
+        with pytest.raises(TypeError):
+            _ = MatchingBackend()
+
+    @pytest.mark.parametrize("backend", [type(x) for x in BACKENDS_TO_TEST])
+    def test_initialization(self, backend):
+        _ = backend()
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize(
+        "method_name",
+        ("add", "subtract", "multiply", "divide", "minimum", "maximum", "mod"),
+    )
+    def test_arithmetic_operations(self, method_name, backend):
+        base = getattr(self.backend, method_name)(self.x1, self.x2)
+        x1 = backend.to_backend_array(self.x1)
+        x2 = backend.to_backend_array(self.x2)
+        other = getattr(backend, method_name)(x1, x2)
+
+        assert np.allclose(base, backend.to_numpy_array(other))
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize(
+        "method_name", ("sum", "mean", "std", "max", "min", "unique")
+    )
+    @pytest.mark.parametrize("axis", ((0), (1)))
+    def test_reduction_operations(self, method_name, backend, axis):
+        base = getattr(self.backend, method_name)(self.x1, axis=axis)
+        other = getattr(backend, method_name)(
+            backend.to_backend_array(self.x1), axis=axis
+        )
+        # Account for bessel function correction in pytorch
+        rtol = 0.01 if method_name != "std" else 0.5
+        assert np.allclose(base, backend.to_numpy_array(other), rtol=rtol)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize(
+        "method_name",
+        ("sqrt", "square", "abs", "transpose", "tobytes", "size"),
+    )
+    def test_array_manipulation(self, method_name, backend):
+        base = getattr(self.backend, method_name)(self.x1)
+        other = getattr(backend, method_name)(backend.to_backend_array(self.x1))
+
+        if type(base) == np.ndarray:
+            assert np.allclose(base, backend.to_numpy_array(other), rtol=0.01)
+        else:
+            assert base == other
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("shape", ((10, 15), (10, 15, 20)))
+    @pytest.mark.parametrize(
+        "dtype", (("_float_dtype", "_complex_dtype", "_int_dtype"))
+    )
+    def test_zeros(self, shape, backend, dtype):
+        dtype_base = getattr(self.backend, dtype)
+        dtype_backend = getattr(backend, dtype)
+        base = self.backend.zeros(shape, dtype=dtype_base)
+        other = backend.zeros(shape, dtype=dtype_backend)
+        assert np.allclose(base, backend.to_numpy_array(other), rtol=0.01)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("shape", ((10, 15), (10, 15, 20)))
+    @pytest.mark.parametrize("fill_value", (-1, 0, 1))
+    def test_full(self, shape, backend, fill_value):
+        base = self.backend.full(shape, fill_value=fill_value)
+        other = backend.full(shape, fill_value=fill_value)
+        assert np.allclose(base, backend.to_numpy_array(other), rtol=0.01)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("power", (0.5, 1, 2))
+    def test_power(self, backend, power):
+        base = self.backend.power(self.x1, power)
+        other = backend.power(backend.to_backend_array(self.x1), power)
+        assert np.allclose(base, backend.to_numpy_array(other), rtol=0.01)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("shift", (-5, 0, 10))
+    @pytest.mark.parametrize("axis", (0, 1))
+    def test_roll(self, backend, shift, axis):
+        base = self.backend.roll(self.x1, (shift,), (axis,))
+        other = backend.roll(backend.to_backend_array(self.x1), (shift,), (axis,))
+        assert np.allclose(base, backend.to_numpy_array(other), rtol=0.01)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("shape", ((10, 15), (10, 15, 20)))
+    @pytest.mark.parametrize("fill_value", (-1, 0, 1))
+    def test_fill(self, shape, backend, fill_value):
+        base = self.backend.full(shape, fill_value=fill_value)
+        other = backend.zeros(shape)
+        other = backend.fill(other, fill_value)
+        assert np.allclose(base, backend.to_numpy_array(other), rtol=0.01)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("min_distance", (1, 5, 10))
+    def test_max_filter_coordinates(self, backend, min_distance):
+        coordinates = backend.max_filter_coordinates(
+            backend.to_backend_array(self.x1), min_distance=min_distance
+        )
+        if len(coordinates):
+            assert coordinates.shape[1] == self.x1.ndim
+        assert True
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize(
+        "dtype", (("_float_dtype", "_complex_dtype", "_int_dtype"))
+    )
+    @pytest.mark.parametrize(
+        "dtype_target", (("_int_dtype", "_complex_dtype", "_float_dtype"))
+    )
+    def test_astype(self, dtype, backend, dtype_target):
+        dtype_base = getattr(backend, dtype)
+        dtype_target = getattr(backend, dtype_target)
+
+        base = backend.zeros((20, 20, 20), dtype=dtype_base)
+        arr = backend.astype(base, dtype_target)
+
+        assert arr.dtype == dtype_target
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("N", (0, 15, 30))
+    def test_arange(self, backend, N):
+        base = self.backend.arange(N)
+        other = getattr(backend, "arange")(
+            N,
+        )
+        assert np.allclose(base, backend.to_numpy_array(other), rtol=0.1)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("return_inverse", (False, True))
+    @pytest.mark.parametrize("return_counts", (False, True))
+    @pytest.mark.parametrize("return_index", (False, True))
+    def test_unique(self, backend, return_inverse, return_counts, return_index):
+        base = self.backend.unique(
+            self.x1,
+            return_inverse=return_inverse,
+            return_counts=return_counts,
+            return_index=return_index,
+        )
+        other = backend.unique(
+            backend.to_backend_array(self.x1),
+            return_inverse=return_inverse,
+            return_counts=return_counts,
+            return_index=return_index,
+        )
+        if isinstance(base, tuple):
+            base, other = tuple(base), tuple(other)
+        for k in range(len(base)):
+            print(
+                k,
+                base[k].shape,
+                other[k].shape,
+                return_inverse,
+                return_counts,
+                return_index,
+            )
+            assert np.allclose(
+                base[k].ravel(), backend.to_numpy_array(other[k]).ravel(), rtol=0.1
+            )
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("k", (0, 15, 30))
+    def test_repeat(self, backend, k):
+        base = self.backend.repeat(self.x1, k)
+        other = backend.repeat(backend.to_backend_array(self.x1), k)
+        assert np.allclose(base, backend.to_numpy_array(other), rtol=0.1)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("dim", (1, 3))
+    @pytest.mark.parametrize("k", (0, 15, 30))
+    def test_topk_indices(self, backend, k: int, dim: int):
+        data = np.random.rand(*(50 for _ in range(dim)))
+        base = self.backend.topk_indices(data, k)
+        other = backend.topk_indices(backend.to_backend_array(data), k)
+
+        for i in range(len(base)):
+            np.allclose(
+                base[i],
+                backend.to_numpy_array(backend.to_backend_array(other[i])),
+                rtol=0.1,
+            )
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    def test_indices(self, backend):
+        base = self.backend.indices(self.x1.shape)
+        other = backend.indices(backend.to_backend_array(self.x1).shape)
+        assert np.allclose(base, backend.to_numpy_array(other), rtol=0.1)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    def test_get_available_memory(self, backend):
+        mem = backend.get_available_memory()
+        assert isinstance(mem, int)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    def test_shared_memory(self, backend):
+        shared_memory_handler = None
+        base = backend.to_backend_array(self.x1)
+        shared = backend.to_sharedarr(
+            arr=base, shared_memory_handler=shared_memory_handler
+        )
+        arr = backend.from_sharedarr(shared)
+        assert np.allclose(backend.to_numpy_array(arr), backend.to_numpy_array(base))
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    def test_shared_memory_managed(self, backend):
+        with SharedMemoryManager() as shared_memory_handler:
+            base = backend.to_backend_array(self.x1)
+            shared = backend.to_sharedarr(
+                arr=base, shared_memory_handler=shared_memory_handler
+            )
+            arr = backend.from_sharedarr(shared)
+            assert np.allclose(
+                backend.to_numpy_array(arr), backend.to_numpy_array(base)
+            )
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("shape", ((10, 15, 100), (10, 15, 20)))
+    @pytest.mark.parametrize("padval", (-1, 0, 1))
+    def test_topleft_pad(self, backend, shape, padval):
+        arr = np.random.rand(30, 30, 30)
+        base = self.backend.topleft_pad(arr, shape=shape, padval=padval)
+        other = backend.topleft_pad(
+            backend.to_backend_array(arr), shape=shape, padval=padval
+        )
+        assert np.allclose(base, backend.to_numpy_array(other), rtol=0.01)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("fast_shape", ((10, 15, 100), (55, 23, 17)))
+    def test_fft(self, backend, fast_shape):
+        _, fast_shape, fast_ft_shape = backend.compute_convolution_shapes(
+            fast_shape, (1 for _ in range(len(fast_shape)))
+        )
+        rfftn, irfftn = backend.build_fft(
+            fast_shape=fast_shape,
+            fast_ft_shape=fast_ft_shape,
+            real_dtype=backend._float_dtype,
+            complex_dtype=backend._complex_dtype,
+        )
+        arr = np.random.rand(*fast_shape)
+        out = np.zeros(fast_ft_shape)
+
+        real_arr = backend.astype(backend.to_backend_array(arr), backend._float_dtype)
+        complex_arr = backend.astype(
+            backend.to_backend_array(out), backend._complex_dtype
+        )
+
+        rfftn(
+            backend.astype(backend.to_backend_array(arr), backend._float_dtype),
+            complex_arr,
+        )
+        irfftn(complex_arr, real_arr)
+        assert np.allclose(arr, backend.to_numpy_array(real_arr), rtol=0.3)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    def test_extract_center(self, backend):
+        new_shape = np.divide(self.x1.shape, 2).astype(int)
+        base = self.backend.extract_center(arr=self.x1, newshape=new_shape)
+        other = backend.extract_center(
+            arr=backend.to_backend_array(self.x1), newshape=new_shape
+        )
+
+        assert np.allclose(base, backend.to_numpy_array(other), rtol=0.01)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    def test_compute_convolution_shapes(self, backend):
+        base = self.backend.compute_convolution_shapes(self.x1.shape, self.x2.shape)
+        other = backend.compute_convolution_shapes(self.x1.shape, self.x2.shape)
+
+        assert base == other
+
+    @pytest.mark.parametrize("dim", (2, 3))
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    @pytest.mark.parametrize("create_mask", (False, True))
+    def test_rigid_transform(self, backend, dim, create_mask):
+        shape = tuple(50 for _ in range(dim))
+        arr = np.zeros(shape)
+        if dim == 2:
+            arr[20:25, 21:26] = 1
+        elif dim == 3:
+            arr[20:25, 21:26, 26:31] = 1
+
+        rotation_matrix = np.eye(dim)
+        rotation_matrix[0, 0] = -1
+
+        out = np.zeros_like(arr)
+
+        arr_mask, out_mask = None, None
+        if create_mask:
+            arr_mask = np.multiply(np.random.rand(*arr.shape) > 0.5, 1.0)
+            out_mask = np.zeros_like(arr_mask)
+            arr_mask = backend.to_backend_array(arr_mask)
+            out_mask = backend.to_backend_array(out_mask)
+
+        arr = backend.to_backend_array(arr)
+        out = backend.to_backend_array(arr)
+
+        rotation_matrix = backend.to_backend_array(rotation_matrix)
+
+        backend.rigid_transform(
+            arr=arr,
+            arr_mask=arr_mask,
+            rotation_matrix=rotation_matrix,
+            out=out,
+            out_mask=out_mask,
+        )
+
+        assert np.round(arr.sum(), 3) == np.round(out.sum(), 3)
+
+    @pytest.mark.parametrize("backend", BACKENDS_TO_TEST)
+    def test_datatype_bytes(self, backend):
+        assert isinstance(backend.datatype_bytes(backend._float_dtype), int)
+        assert isinstance(backend.datatype_bytes(backend._complex_dtype), int)
+        assert isinstance(backend.datatype_bytes(backend._int_dtype), int)