pyreduce-astro 0.7a4__cp314-cp314-win_amd64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pyreduce/__init__.py +67 -0
- pyreduce/__main__.py +322 -0
- pyreduce/cli.py +342 -0
- pyreduce/clib/Release/_slitfunc_2d.cp311-win_amd64.exp +0 -0
- pyreduce/clib/Release/_slitfunc_2d.cp311-win_amd64.lib +0 -0
- pyreduce/clib/Release/_slitfunc_2d.cp312-win_amd64.exp +0 -0
- pyreduce/clib/Release/_slitfunc_2d.cp312-win_amd64.lib +0 -0
- pyreduce/clib/Release/_slitfunc_2d.cp313-win_amd64.exp +0 -0
- pyreduce/clib/Release/_slitfunc_2d.cp313-win_amd64.lib +0 -0
- pyreduce/clib/Release/_slitfunc_2d.cp314-win_amd64.exp +0 -0
- pyreduce/clib/Release/_slitfunc_2d.cp314-win_amd64.lib +0 -0
- pyreduce/clib/Release/_slitfunc_2d.obj +0 -0
- pyreduce/clib/Release/_slitfunc_bd.cp311-win_amd64.exp +0 -0
- pyreduce/clib/Release/_slitfunc_bd.cp311-win_amd64.lib +0 -0
- pyreduce/clib/Release/_slitfunc_bd.cp312-win_amd64.exp +0 -0
- pyreduce/clib/Release/_slitfunc_bd.cp312-win_amd64.lib +0 -0
- pyreduce/clib/Release/_slitfunc_bd.cp313-win_amd64.exp +0 -0
- pyreduce/clib/Release/_slitfunc_bd.cp313-win_amd64.lib +0 -0
- pyreduce/clib/Release/_slitfunc_bd.cp314-win_amd64.exp +0 -0
- pyreduce/clib/Release/_slitfunc_bd.cp314-win_amd64.lib +0 -0
- pyreduce/clib/Release/_slitfunc_bd.obj +0 -0
- pyreduce/clib/__init__.py +0 -0
- pyreduce/clib/_slitfunc_2d.cp311-win_amd64.pyd +0 -0
- pyreduce/clib/_slitfunc_2d.cp312-win_amd64.pyd +0 -0
- pyreduce/clib/_slitfunc_2d.cp313-win_amd64.pyd +0 -0
- pyreduce/clib/_slitfunc_2d.cp314-win_amd64.pyd +0 -0
- pyreduce/clib/_slitfunc_bd.cp311-win_amd64.pyd +0 -0
- pyreduce/clib/_slitfunc_bd.cp312-win_amd64.pyd +0 -0
- pyreduce/clib/_slitfunc_bd.cp313-win_amd64.pyd +0 -0
- pyreduce/clib/_slitfunc_bd.cp314-win_amd64.pyd +0 -0
- pyreduce/clib/build_extract.py +75 -0
- pyreduce/clib/slit_func_2d_xi_zeta_bd.c +1313 -0
- pyreduce/clib/slit_func_2d_xi_zeta_bd.h +55 -0
- pyreduce/clib/slit_func_bd.c +362 -0
- pyreduce/clib/slit_func_bd.h +17 -0
- pyreduce/clipnflip.py +147 -0
- pyreduce/combine_frames.py +861 -0
- pyreduce/configuration.py +191 -0
- pyreduce/continuum_normalization.py +329 -0
- pyreduce/cwrappers.py +404 -0
- pyreduce/datasets.py +238 -0
- pyreduce/echelle.py +413 -0
- pyreduce/estimate_background_scatter.py +130 -0
- pyreduce/extract.py +1362 -0
- pyreduce/extraction_width.py +77 -0
- pyreduce/instruments/__init__.py +0 -0
- pyreduce/instruments/aj.py +9 -0
- pyreduce/instruments/aj.yaml +51 -0
- pyreduce/instruments/andes.py +102 -0
- pyreduce/instruments/andes.yaml +72 -0
- pyreduce/instruments/common.py +711 -0
- pyreduce/instruments/common.yaml +57 -0
- pyreduce/instruments/crires_plus.py +103 -0
- pyreduce/instruments/crires_plus.yaml +101 -0
- pyreduce/instruments/filters.py +195 -0
- pyreduce/instruments/harpn.py +203 -0
- pyreduce/instruments/harpn.yaml +140 -0
- pyreduce/instruments/harps.py +312 -0
- pyreduce/instruments/harps.yaml +144 -0
- pyreduce/instruments/instrument_info.py +140 -0
- pyreduce/instruments/jwst_miri.py +29 -0
- pyreduce/instruments/jwst_miri.yaml +53 -0
- pyreduce/instruments/jwst_niriss.py +98 -0
- pyreduce/instruments/jwst_niriss.yaml +60 -0
- pyreduce/instruments/lick_apf.py +35 -0
- pyreduce/instruments/lick_apf.yaml +60 -0
- pyreduce/instruments/mcdonald.py +123 -0
- pyreduce/instruments/mcdonald.yaml +56 -0
- pyreduce/instruments/metis_ifu.py +45 -0
- pyreduce/instruments/metis_ifu.yaml +62 -0
- pyreduce/instruments/metis_lss.py +45 -0
- pyreduce/instruments/metis_lss.yaml +62 -0
- pyreduce/instruments/micado.py +45 -0
- pyreduce/instruments/micado.yaml +62 -0
- pyreduce/instruments/models.py +257 -0
- pyreduce/instruments/neid.py +156 -0
- pyreduce/instruments/neid.yaml +61 -0
- pyreduce/instruments/nirspec.py +215 -0
- pyreduce/instruments/nirspec.yaml +63 -0
- pyreduce/instruments/nte.py +42 -0
- pyreduce/instruments/nte.yaml +55 -0
- pyreduce/instruments/uves.py +46 -0
- pyreduce/instruments/uves.yaml +65 -0
- pyreduce/instruments/xshooter.py +39 -0
- pyreduce/instruments/xshooter.yaml +63 -0
- pyreduce/make_shear.py +607 -0
- pyreduce/masks/mask_crires_plus_det1.fits.gz +0 -0
- pyreduce/masks/mask_crires_plus_det2.fits.gz +0 -0
- pyreduce/masks/mask_crires_plus_det3.fits.gz +0 -0
- pyreduce/masks/mask_ctio_chiron.fits.gz +0 -0
- pyreduce/masks/mask_elodie.fits.gz +0 -0
- pyreduce/masks/mask_feros3.fits.gz +0 -0
- pyreduce/masks/mask_flames_giraffe.fits.gz +0 -0
- pyreduce/masks/mask_harps_blue.fits.gz +0 -0
- pyreduce/masks/mask_harps_red.fits.gz +0 -0
- pyreduce/masks/mask_hds_blue.fits.gz +0 -0
- pyreduce/masks/mask_hds_red.fits.gz +0 -0
- pyreduce/masks/mask_het_hrs_2x5.fits.gz +0 -0
- pyreduce/masks/mask_jwst_miri_lrs_slitless.fits.gz +0 -0
- pyreduce/masks/mask_jwst_niriss_gr700xd.fits.gz +0 -0
- pyreduce/masks/mask_lick_apf_.fits.gz +0 -0
- pyreduce/masks/mask_mcdonald.fits.gz +0 -0
- pyreduce/masks/mask_nes.fits.gz +0 -0
- pyreduce/masks/mask_nirspec_nirspec.fits.gz +0 -0
- pyreduce/masks/mask_sarg.fits.gz +0 -0
- pyreduce/masks/mask_sarg_2x2a.fits.gz +0 -0
- pyreduce/masks/mask_sarg_2x2b.fits.gz +0 -0
- pyreduce/masks/mask_subaru_hds_red.fits.gz +0 -0
- pyreduce/masks/mask_uves_blue.fits.gz +0 -0
- pyreduce/masks/mask_uves_blue_binned_2_2.fits.gz +0 -0
- pyreduce/masks/mask_uves_middle.fits.gz +0 -0
- pyreduce/masks/mask_uves_middle_2x2_split.fits.gz +0 -0
- pyreduce/masks/mask_uves_middle_binned_2_2.fits.gz +0 -0
- pyreduce/masks/mask_uves_red.fits.gz +0 -0
- pyreduce/masks/mask_uves_red_2x2.fits.gz +0 -0
- pyreduce/masks/mask_uves_red_2x2_split.fits.gz +0 -0
- pyreduce/masks/mask_uves_red_binned_2_2.fits.gz +0 -0
- pyreduce/masks/mask_xshooter_nir.fits.gz +0 -0
- pyreduce/pipeline.py +619 -0
- pyreduce/rectify.py +138 -0
- pyreduce/reduce.py +2065 -0
- pyreduce/settings/settings_AJ.json +19 -0
- pyreduce/settings/settings_ANDES.json +89 -0
- pyreduce/settings/settings_CRIRES_PLUS.json +89 -0
- pyreduce/settings/settings_HARPN.json +73 -0
- pyreduce/settings/settings_HARPS.json +69 -0
- pyreduce/settings/settings_JWST_MIRI.json +55 -0
- pyreduce/settings/settings_JWST_NIRISS.json +55 -0
- pyreduce/settings/settings_LICK_APF.json +62 -0
- pyreduce/settings/settings_MCDONALD.json +58 -0
- pyreduce/settings/settings_METIS_IFU.json +77 -0
- pyreduce/settings/settings_METIS_LSS.json +77 -0
- pyreduce/settings/settings_MICADO.json +78 -0
- pyreduce/settings/settings_NEID.json +73 -0
- pyreduce/settings/settings_NIRSPEC.json +58 -0
- pyreduce/settings/settings_NTE.json +60 -0
- pyreduce/settings/settings_UVES.json +54 -0
- pyreduce/settings/settings_XSHOOTER.json +78 -0
- pyreduce/settings/settings_pyreduce.json +184 -0
- pyreduce/settings/settings_schema.json +850 -0
- pyreduce/tools/__init__.py +0 -0
- pyreduce/tools/combine.py +117 -0
- pyreduce/trace.py +979 -0
- pyreduce/util.py +1366 -0
- pyreduce/wavecal/MICADO_HK_3arcsec_chip5.npz +0 -0
- pyreduce/wavecal/atlas/thar.fits +4946 -13
- pyreduce/wavecal/atlas/thar_list.txt +4172 -0
- pyreduce/wavecal/atlas/une.fits +0 -0
- pyreduce/wavecal/convert.py +38 -0
- pyreduce/wavecal/crires_plus_J1228_Open_det1.npz +0 -0
- pyreduce/wavecal/crires_plus_J1228_Open_det2.npz +0 -0
- pyreduce/wavecal/crires_plus_J1228_Open_det3.npz +0 -0
- pyreduce/wavecal/harpn_harpn_2D.npz +0 -0
- pyreduce/wavecal/harps_blue_2D.npz +0 -0
- pyreduce/wavecal/harps_blue_pol_2D.npz +0 -0
- pyreduce/wavecal/harps_red_2D.npz +0 -0
- pyreduce/wavecal/harps_red_pol_2D.npz +0 -0
- pyreduce/wavecal/mcdonald.npz +0 -0
- pyreduce/wavecal/metis_lss_l_2D.npz +0 -0
- pyreduce/wavecal/metis_lss_m_2D.npz +0 -0
- pyreduce/wavecal/nirspec_K2.npz +0 -0
- pyreduce/wavecal/uves_blue_360nm_2D.npz +0 -0
- pyreduce/wavecal/uves_blue_390nm_2D.npz +0 -0
- pyreduce/wavecal/uves_blue_437nm_2D.npz +0 -0
- pyreduce/wavecal/uves_middle_2x2_2D.npz +0 -0
- pyreduce/wavecal/uves_middle_565nm_2D.npz +0 -0
- pyreduce/wavecal/uves_middle_580nm_2D.npz +0 -0
- pyreduce/wavecal/uves_middle_600nm_2D.npz +0 -0
- pyreduce/wavecal/uves_middle_665nm_2D.npz +0 -0
- pyreduce/wavecal/uves_middle_860nm_2D.npz +0 -0
- pyreduce/wavecal/uves_red_580nm_2D.npz +0 -0
- pyreduce/wavecal/uves_red_600nm_2D.npz +0 -0
- pyreduce/wavecal/uves_red_665nm_2D.npz +0 -0
- pyreduce/wavecal/uves_red_760nm_2D.npz +0 -0
- pyreduce/wavecal/uves_red_860nm_2D.npz +0 -0
- pyreduce/wavecal/xshooter_nir.npz +0 -0
- pyreduce/wavelength_calibration.py +1871 -0
- pyreduce_astro-0.7a4.dist-info/METADATA +106 -0
- pyreduce_astro-0.7a4.dist-info/RECORD +182 -0
- pyreduce_astro-0.7a4.dist-info/WHEEL +4 -0
- pyreduce_astro-0.7a4.dist-info/entry_points.txt +2 -0
- pyreduce_astro-0.7a4.dist-info/licenses/LICENSE +674 -0
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"""
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Simple script that converts IDL savefiles into numpy savefiles
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"""
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import os
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import numpy as np
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from numpy.lib.recfunctions import append_fields
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from scipy.io import readsav
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def remove_field_name(a, name):
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names = list(a.dtype.names)
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if name in names:
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names.remove(name)
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b = a[names]
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return b
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files = [f for f in os.listdir() if f.endswith(".sav")]
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if len(files) == 0:
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print("Nothing to convert")
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for f in files:
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data = readsav(f)
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cs_lines = data["cs_lines"]
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mask = ~cs_lines.flag.astype(bool)
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cs_lines = remove_field_name(cs_lines, "FLAG")
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cs_lines = append_fields(cs_lines, "flag", mask, usemask=False, asrecarray=True)
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data["cs_lines"] = cs_lines
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new_name = f[:-4]
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np.savez(new_name, **data)
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print(f"Converted {f} to {new_name}.npz")
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