pyreduce-astro 0.7a4__cp314-cp314-win_amd64.whl

pyreduce/settings/settings_AJ.json

@@ -0,0 +1,19 @@
+{
+  "__instrument__": "AJ",
+  "orders": {
+    "degree": 4,
+    "noise": 0,
+    "min_cluster": 2000,
+    "min_width": 0.5,
+    "filter_y": 8,
+    "border_width": 0,
+    "closing_shape": [1, 1],
+    "manual": false,
+    "auto_merge_threshold": 1.0
+  },
+  "science": {
+    "extraction_method": "optimal",
+    "extraction_width": 0.5,
+    "oversampling": 6
+  }
+}

pyreduce/settings/settings_ANDES.json

@@ -0,0 +1,89 @@
+{
+    "__instrument__": "ANDES",
+    "instrument": {},
+    "bias": {
+        "degree": 1
+    },
+    "flat": {
+        "bias_scaling": "exposure_time"
+    },
+    "orders": {
+        "degree": 3,
+        "degree_before_merge": 1,
+        "filter_y": 100,
+        "min_cluster": 200000,
+        "border_width": 0,
+        "noise": 0,
+        "manual": false,
+        "auto_merge_threshold": 1,
+        "merge_min_threshold": 0.9,
+        "bias_scaling": "exposure_time"
+    },
+    "scatter": {
+        "extraction_width": 0.45,
+        "border_width": 50,
+        "bias_scaling": "exposure_time"
+    },
+    "norm_flat": {
+        "smooth_slitfunction": 2,
+        "smooth_spectrum": 0,
+        "extraction_width": 100,
+        "oversampling": 12,
+        "swath_width": 200,
+        "threshold": 1000
+    },
+    "wavecal_master": {
+        "extraction_method": "optimal",
+        "extraction_width": 100,
+        "oversampling": 5,
+        "swath_width": 2000,
+        "smooth_slitfunction": 1,
+        "smooth_spectrum": 1e-7,
+        "extraction_cutoff": 20,
+        "bias_scaling": "exposure_time"
+    },
+    "wavecal_init": {
+        "element": "UNe",
+        "medium": "vac",
+        "cutoff": 5,
+        "smoothing": 1
+    },
+    "wavecal": {
+        "threshold": 100,
+        "closing": 0,
+        "dimensionality": "2D",
+        "element": null,
+        "degree": [5,5],
+        "manual": false
+    },
+    "freq_comb_master": {
+        "extraction_width": 10,
+        "bias_scaling": "exposure_time"
+    },
+    "freq_comb": {
+        "threshold": 100,
+        "dimensionality": "2D",
+        "degree": [8, 8]
+    },
+    "curvature": {
+        "peak_threshold": 1,
+        "window_width": 15,
+        "extraction_width": 100,
+        "dimensionality": "2D",
+        "degree": [
+            1,
+            1
+        ],
+        "curv_degree": 1,
+        "peak_function": "lorentzian",
+        "bias_scaling": "exposure_time"
+    },
+    "science": {
+        "oversampling": 1,
+        "extraction_width": 10,
+        "swath_width": 300,
+        "smooth_slitfunction": 0.1,
+        "smooth_spectrum": 0,
+        "bias_scaling": "exposure_time"
+    }
+}

pyreduce/settings/settings_CRIRES_PLUS.json

@@ -0,0 +1,89 @@
+{
+    "__instrument__": "CRIRES_PLUS",
+    "instrument": {},
+    "bias": {
+        "degree": 1
+    },
+    "flat": {
+        "bias_scaling": "exposure_time"
+    },
+    "orders": {
+        "degree": 3,
+        "degree_before_merge": 1,
+        "filter_y": 100,
+        "min_cluster": 200000,
+        "border_width": 0,
+        "noise": 0,
+        "manual": false,
+        "auto_merge_threshold": 1,
+        "merge_min_threshold": 0.9,
+        "bias_scaling": "exposure_time"
+    },
+    "scatter": {
+        "extraction_width": 0.45,
+        "border_width": 50,
+        "bias_scaling": "exposure_time"
+    },
+    "norm_flat": {
+        "smooth_slitfunction": 2,
+        "smooth_spectrum": 0,
+        "extraction_width": 100,
+        "oversampling": 12,
+        "swath_width": 200,
+        "threshold": 1000
+    },
+    "wavecal_master": {
+        "extraction_method": "optimal",
+        "extraction_width": 100,
+        "oversampling": 5,
+        "swath_width": 2000,
+        "smooth_slitfunction": 1,
+        "smooth_spectrum": 1e-7,
+        "extraction_cutoff": 20,
+        "bias_scaling": "exposure_time"
+    },
+    "wavecal_init": {
+        "element": "UNe",
+        "medium": "vac",
+        "cutoff": 5,
+        "smoothing": 1
+    },
+    "wavecal": {
+        "threshold": 100,
+        "closing": 0,
+        "dimensionality": "2D",
+        "element": null,
+        "degree": [5,5],
+        "manual": false
+    },
+    "freq_comb_master": {
+        "extraction_width": 10,
+        "bias_scaling": "exposure_time"
+    },
+    "freq_comb": {
+        "threshold": 100,
+        "dimensionality": "2D",
+        "degree": [8, 8]
+    },
+    "curvature": {
+        "peak_threshold": 1,
+        "window_width": 15,
+        "extraction_width": 100,
+        "dimensionality": "2D",
+        "degree": [
+            1,
+            1
+        ],
+        "curv_degree": 1,
+        "peak_function": "lorentzian",
+        "bias_scaling": "exposure_time"
+    },
+    "science": {
+        "oversampling": 1,
+        "extraction_width": 10,
+        "swath_width": 300,
+        "smooth_slitfunction": 0.1,
+        "smooth_spectrum": 0,
+        "bias_scaling": "exposure_time"
+    }
+}

pyreduce/settings/settings_HARPN.json

@@ -0,0 +1,73 @@
+{
+    "__instrument__": "HARPN",
+    "instrument": {
+        "fiber": "A"
+    },
+    "orders": {
+        "degree": 4,
+        "filter_y": 80,
+        "min_cluster": 2000,
+        "noise": 8,
+        "manual": false
+    },
+    "scatter": {
+        "extraction_width": 10
+    },
+    "norm_flat": {
+        "smooth_slitfunction": 2,
+        "smooth_spectrum": 1e-7,
+        "extraction_width": 10,
+        "oversampling": 12,
+        "swath_width": 200,
+        "threshold": 1000
+    },
+    "wavecal_master": {
+        "extraction_width": 5,
+        "collapse_function" : "median",
+        "bias_scaling" : "number_of_files"
+    },
+    "wavecal_init": {
+        "element": "thar",
+        "medium": "vac"
+    },
+    "wavecal": {
+        "threshold": 100,
+        "dimensionality": "2D",
+        "degree": [
+            5,
+            5
+        ],
+        "manual": false,
+        "element": "thar",
+        "medium": "vac",
+        "correlate_cols": 0
+    },
+    "freq_comb_master": {
+        "extraction_width": 10
+    },
+    "freq_comb": {
+        "threshold": 100,
+        "dimensionality": "2D",
+        "nstep": 7,
+        "degree": [
+            9,
+            7
+        ]
+    },
+    "curvature": {
+        "extraction_width": 10,
+        "peak_threshold": 0,
+        "peak_width": 3,
+        "window_width": 5,
+        "dimensionality": "1D",
+        "curv_degree": 1,
+        "degree": 3
+    },
+    "science": {
+        "oversampling": 10,
+        "extraction_width": 10,
+        "swath_width": 300,
+        "smooth_slitfunction": 1,
+        "smooth_spectrum": 0
+    }
+}

pyreduce/settings/settings_HARPS.json

@@ -0,0 +1,69 @@
+{
+    "__instrument__": "HARPS",
+    "instrument": {
+        "polarimetry": false,
+        "fiber": "A"
+    },
+    "orders": {
+        "degree": 4,
+        "filter_y": 80,
+        "min_cluster": 2000,
+        "noise": 8,
+        "manual": false
+    },
+    "scatter": {
+        "extraction_width": 10
+    },
+    "norm_flat": {
+        "smooth_slitfunction": 2,
+        "smooth_spectrum": 1e-7,
+        "extraction_width": 10,
+        "oversampling": 12,
+        "swath_width": 200,
+        "threshold": 1000
+    },
+    "wavecal_master": {
+        "extraction_width": 10
+    },
+    "wavecal_init": {
+        "element": "thar",
+        "medium": "vac"
+    },
+    "wavecal": {
+        "threshold": 100,
+        "dimensionality": "2D",
+        "degree": [
+            3,
+            6
+        ],
+        "manual": false
+    },
+    "freq_comb_master": {
+        "extraction_width": 10
+    },
+    "freq_comb": {
+        "threshold": 100,
+        "dimensionality": "2D",
+        "nstep": 7,
+        "degree": [
+            9,
+            7
+        ]
+    },
+    "curvature": {
+        "extraction_width": 10,
+        "peak_threshold": 0,
+        "peak_width": 3,
+        "window_width": 5,
+        "dimensionality": "1D",
+        "curv_degree": 1,
+        "degree": 3
+    },
+    "science": {
+        "oversampling": 10,
+        "extraction_width": 10,
+        "swath_width": 300,
+        "smooth_slitfunction": 1,
+        "smooth_spectrum": 0
+    }
+}

pyreduce/settings/settings_JWST_MIRI.json

@@ -0,0 +1,55 @@
+{
+    "__instrument__": "JWST_MIRI",
+    "instrument": {},
+    "orders": {
+        "degree": 4,
+        "filter_y": 1,
+        "min_cluster": 0,
+        "noise": 0,
+        "border_width": 0,
+        "auto_merge_threshold": 0,
+        "merge_min_threshold": 0,
+        "manual": false
+    },
+    "scatter":{
+        "extraction_width": 15
+    },
+    "norm_flat": {
+        "smooth_slitfunction": 2,
+        "smooth_spectrum": 0,
+        "extraction_width": 15,
+        "oversampling": 12,
+        "swath_width": 100,
+        "threshold": 1000
+    },
+    "wavecal_master": {
+        "extraction_width": 10
+    },
+    "wavecal": {
+        "threshold": 100,
+        "dimensionality": "1D",
+        "degree": 2,
+        "manual": false
+    },
+    "freq_comb_master": {
+        "extraction_width": 10
+    },
+    "freq_comb": {
+        "threshold": 100,
+        "dimensionality": "2D",
+        "nstep": 0,
+        "degree": [19, 10]
+    },
+    "curvature": {
+        "extraction_width": 10,
+        "dimensionality": "2D",
+        "degree": [3, 6]
+    },
+    "science": {
+        "oversampling": 5,
+        "extraction_width": 25,
+        "swath_width": 100,
+        "smooth_slitfunction": 1,
+        "smooth_spectrum": 0
+    }
+}

pyreduce/settings/settings_JWST_NIRISS.json

@@ -0,0 +1,55 @@
+{
+    "__instrument__": "JWST_NIRISS",
+    "instrument": {},
+    "orders": {
+        "degree": 4,
+        "filter_y": 50,
+        "min_cluster": 500,
+        "noise": 10,
+        "border_width": 0,
+        "auto_merge_threshold": 1,
+        "merge_min_threshold": 1,
+        "manual": false
+    },
+    "scatter": {
+        "extraction_width": 15
+    },
+    "norm_flat": {
+        "smooth_slitfunction": 2,
+        "smooth_spectrum": 0,
+        "extraction_width": 15,
+        "oversampling": 12,
+        "swath_width": 200,
+        "threshold": 1000
+    },
+    "wavecal_master": {
+        "extraction_width": 10
+    },
+    "wavecal": {
+        "threshold": 100,
+        "dimensionality": "1D",
+        "degree": 2,
+        "manual": false
+    },
+    "freq_comb_master": {
+        "extraction_width": 10
+    },
+    "freq_comb": {
+        "threshold": 100,
+        "dimensionality": "2D",
+        "nstep": 0,
+        "degree": [19, 10]
+    },
+    "curvature": {
+        "extraction_width": 10,
+        "dimensionality": "2D",
+        "degree": [3, 6]
+    },
+    "science": {
+        "oversampling": 5,
+        "extraction_width": 15,
+        "swath_width": 300,
+        "smooth_slitfunction": 0.1,
+        "smooth_spectrum": 0
+    }
+}

pyreduce/settings/settings_LICK_APF.json

@@ -0,0 +1,62 @@
+{
+    "__instrument__": "LICK_APF",
+    "instrument": {},
+    "bias": {
+    },
+    "flat": {
+    },
+    "orders": {
+        "degree": 4,
+        "filter_y": 15,
+        "min_cluster": 700,
+        "border_width": 0,
+        "noise": 10,
+        "merge_min_threshold": 0.01,
+        "auto_merge_threshold": 0.1,
+        "closing_shape": [3, 10],
+        "manual": true
+    },
+    "scatter": {
+        "extraction_width": [9, 9]
+    },
+    "norm_flat": {
+        "smooth_slitfunction": 2,
+        "smooth_spectrum": 0,
+        "extraction_width": [9, 9],
+        "oversampling": 12,
+        "swath_width": 300
+    },
+    "wavecal_master": {
+        "extraction_width": 0.25
+    },
+    "wavecal": {
+        "threshold": 100,
+        "dimensionality": "2D",
+        "degree": [2, 6],
+        "manual": false
+    },
+    "freq_comb_master": {
+        "extraction_width": 0.25
+    },
+    "freq_comb": {
+        "dimensionality": "2D",
+        "degree": [6, 6]
+    },
+    "curvature": {
+        "extraction_width": 0.25,
+        "dimensionality": "1D",
+        "degree": 2
+    },
+    "science": {
+        "oversampling": 10,
+        "extraction_width": [8, 8],
+        "swath_width": 800,
+        "smooth_slitfunction": 6,
+        "smooth_spectrum": 0
+    },
+    "continuum": {
+    },
+    "finalize": {
+        "filename": "{input}.fits"
+    }
+}

pyreduce/settings/settings_MCDONALD.json

@@ -0,0 +1,58 @@
+{
+    "__instrument__": "MCDONALD",
+    "instrument": {},
+    "orders": {
+        "degree": 4,
+        "degree_before_merge": 2,
+        "regularization": 0,
+        "closing_shape": [3, 10],
+        "filter_y": 30,
+        "min_cluster": 200,
+        "noise": 50,
+        "auto_merge_threshold": 0.9,
+        "merge_min_threshold": 0.5,
+        "manual": true
+    },
+    "scatter":{
+        "extraction_width": 0.3
+    },
+    "norm_flat": {
+        "smooth_slitfunction": 2,
+        "smooth_spectrum": 0,
+        "extraction_width": 0.4,
+        "oversampling": 12,
+        "swath_width": 200,
+        "threshold": 1000
+    },
+    "wavecal_master": {
+        "extraction_width": 10
+    },
+    "wavecal": {
+        "threshold": 500,
+        "dimensionality": "1D",
+        "degree": 8,
+        "manual": false,
+        "element": "thar",
+        "medium": "vac"
+    },
+    "freq_comb_master": {
+        "extraction_width": 10
+    },
+    "freq_comb": {
+        "threshold": 100,
+        "dimensionality": "2D",
+        "degree": [6, 6]
+    },
+    "curvature": {
+        "extraction_width": 10,
+        "dimensionality": "2D",
+        "degree": [3, 6]
+    },
+    "science": {
+        "oversampling": 1,
+        "extraction_width": 10,
+        "swath_width": 300,
+        "smooth_slitfunction": 0.1,
+        "smooth_spectrum": 0
+    }
+}

pyreduce/settings/settings_METIS_IFU.json

@@ -0,0 +1,77 @@
+{
+    "__instrument__": "METIS_IFU",
+    "flat":{
+        "bias_scaling": "number_of_files",
+        "plot": false
+    },
+    "orders": {
+        "degree": 4,
+        "degree_before_merge": "best",
+        "bias_scaling": "number_of_files",
+        "filter_y": 20,
+        "min_cluster": 100,
+        "noise": 120,
+        "border_width": 6,
+        "auto_merge_threshold": 0.9,
+        "merge_min_threshold": 0.01,
+        "manual": false,
+        "min_width": 0,
+        "plot": false
+    },
+    "scatter": {
+        "bias_scaling": "number_of_files",
+        "extraction_width": 0.45,
+        "border_width": 20
+    },
+    "norm_flat": {
+        "smooth_slitfunction": 1e3,
+        "smooth_spectrum": 1e-7,
+        "extraction_width": 0.14,
+        "oversampling": 12,
+        "swath_width": 200,
+        "threshold": 1000
+    },
+    "curvature": {
+        "extraction_method": "arc",
+        "dimensionality": "1D",
+        "curv_degree": 2,
+        "collapse_function": "mean",
+        "extraction_width": 0.77,
+        "extraction_cutoff": 20,
+        "curvature_cutoff": 3,
+        "peak_threshold": 0.9725,
+        "peak_width": 1,
+        "window_width": 1,
+        "peak_function": "lorentzian",
+        "bias_scaling": "exposure_time",
+        "degree": 2
+    },
+    "wavecal_master": {
+        "extraction_method": "arc",
+        "collapse_function": "median",
+        "extraction_width": 0.7825,
+        "extraction_cutoff": 10,
+        "bias_scaling": "exposure_time"
+    },
+     "wavecal": {
+        "extraction_method": "optimal",
+        "bias_scaling": "exposure_time",
+        "threshold": 70,
+        "iterations": 3,
+        "dimensionality": "2D",
+        "extraction_width": 0.7825,
+        "degree": [
+            4,
+            4
+        ],
+        "manual": true,
+        "shift_window": 0.1
+    },
+    "science": {
+        "oversampling": 10,
+        "extraction_width": 0.14235,
+        "swath_width": 400,
+        "smooth_slitfunction": 2,
+        "smooth_spectrum": 0.5e-5
+    }
+}