pyopenms 2.3.0__zip

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (166) hide show
  1. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/License.txt +52 -0
  2. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/__init__.py +54 -0
  3. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/__init__.pyc +0 -0
  4. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/all_modules.py +4 -0
  5. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/all_modules.pyc +0 -0
  6. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/docompile.py +35 -0
  7. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/docompile.pyc +0 -0
  8. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/libOpenMS.so +0 -0
  9. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/libOpenSwathAlgo.so +0 -0
  10. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/libSuperHirn.so +0 -0
  11. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/pyopenms_1.so +0 -0
  12. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/pyopenms_2.so +0 -0
  13. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/pyopenms_3.so +0 -0
  14. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/pyopenms_4.so +0 -0
  15. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/python_extras.py +22 -0
  16. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/python_extras.pyc +0 -0
  17. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/qt_version_info.py +2 -0
  18. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/qt_version_info.pyc +0 -0
  19. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/Elements.xml +1221 -0
  20. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/Enzymes.xml +269 -0
  21. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/HMDBMappingFile.tsv +10104 -0
  22. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModel.scale +6 -0
  23. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModel.svm +626 -0
  24. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModelNoised2.scale +4 -0
  25. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModelNoised2.svm +559 -0
  26. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModelNoised5.scale +4 -0
  27. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MetaboliteIsoModelNoised5.svm +1010 -0
  28. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/MissedCleavage.model +229 -0
  29. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/NegativeAdducts.tsv +15 -0
  30. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/OMSSA_modification_mapping +158 -0
  31. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/PSI-MOD.obo +23804 -0
  32. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/PositiveAdducts.tsv +33 -0
  33. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/Residues.xml +470 -0
  34. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/XLMOD.obo +623 -0
  35. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/XTandem_default_input.xml +181 -0
  36. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CHEMISTRY/unimod.xml +38885 -0
  37. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CV/brenda.obo +22923 -0
  38. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CV/goslim_goa.obo +823 -0
  39. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CV/psi-ms.obo +17899 -0
  40. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CV/psi-mzdata.obo +2920 -0
  41. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CV/qc-cv.obo +471 -0
  42. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CV/quality.obo +12581 -0
  43. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CV/unimod.obo +13214 -0
  44. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/CV/unit.obo +2585 -0
  45. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPAS.appdata.xml +33 -0
  46. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPAS.desktop +10 -0
  47. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPView.appdata.xml +35 -0
  48. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPView.desktop +11 -0
  49. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/DESKTOP/readme.txt +5 -0
  50. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/GUISTYLE/qtStyleSheet.qss +9 -0
  51. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/IDPool/IDPool.txt +0 -0
  52. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/IDPool/README +29 -0
  53. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/MAPPING/TraML-mapping.xml +171 -0
  54. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/MAPPING/ms-mapping.xml +187 -0
  55. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/MAPPING/mzIdentML-mapping.xml +221 -0
  56. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/MAPPING/mzdata-mapping.xml +158 -0
  57. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/PIP/codebooks.data +2 -0
  58. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/PIP/linearMapping.data +2 -0
  59. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/CTD_0_3.xsd +168 -0
  60. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_0.xsd +376 -0
  61. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_1.xsd +381 -0
  62. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_2.xsd +202 -0
  63. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_3.xsd +686 -0
  64. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_4.xsd +694 -0
  65. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_5.xsd +698 -0
  66. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_6.xsd +613 -0
  67. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/ConsensusXML_1_7.xsd +618 -0
  68. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/CvMapping.xsd +157 -0
  69. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_0.xsd +737 -0
  70. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_1.xsd +770 -0
  71. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_2.xsd +770 -0
  72. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_3.xsd +660 -0
  73. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_4.xsd +660 -0
  74. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_5.xsd +670 -0
  75. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_6.xsd +674 -0
  76. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_7.xsd +679 -0
  77. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_8.xsd +587 -0
  78. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/FeatureXML_1_9.xsd +592 -0
  79. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/FuGElightv1.0.0.xsd +1118 -0
  80. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_0.xsd +340 -0
  81. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_1.xsd +345 -0
  82. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_2.xsd +354 -0
  83. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_3.xsd +367 -0
  84. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_4.xsd +371 -0
  85. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/IdXML_1_5.xsd +371 -0
  86. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_0.xsd +91 -0
  87. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_1.xsd +101 -0
  88. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_2.xsd +168 -0
  89. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_3.xsd +173 -0
  90. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_4.xsd +149 -0
  91. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_6_2.xsd +99 -0
  92. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/ToolDescriptor_1_0.xsd +232 -0
  93. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/TraML0.9.3.xsd +552 -0
  94. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/TraML1.0.0.xsd +622 -0
  95. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/TrafoXML_1_0.xsd +102 -0
  96. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/general_types_1.0.xsd +17 -0
  97. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzData_1_05.xsd +631 -0
  98. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzIdentML1.0.0.xsd +1339 -0
  99. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzIdentML1.1.0.xsd +1845 -0
  100. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzML_1_00.xsd +921 -0
  101. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzML_1_10.xsd +1119 -0
  102. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzML_idx_1_00.xsd +992 -0
  103. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzML_idx_1_10.xsd +1201 -0
  104. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzQCML_0_0_5.xsd +220 -0
  105. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzQuantML_1_0_0-rc2.xsd +1557 -0
  106. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzXML_2_1.xsd +1 -1
  107. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzXML_3.1.xsd +1 -1
  108. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzXML_3.1_mod.xsd +686 -0
  109. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/mzXML_idx_3.1.xsd +60 -0
  110. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/pepXML_v114.xsd +1448 -0
  111. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/protXML_v6.xsd +935 -0
  112. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/qcML_0.0.7.xsd +235 -0
  113. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/separation_technique_1.0.xsd +10 -0
  114. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/xQuest_1_0.xsd +210 -0
  115. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/InternalCalibration_Models.R +40 -0
  116. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/InternalCalibration_Residuals.R +57 -0
  117. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_acc.R +28 -0
  118. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_idmap.R +39 -0
  119. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_inj.R +27 -0
  120. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_rt_acc.R +31 -0
  121. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_setid.R +27 -0
  122. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/ProduceQCFigures_tic.R +23 -0
  123. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/Rscript_generic_example.R +88 -0
  124. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/mzTab2tsv_PEP.R +47 -0
  125. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/mzTab2tsv_PRT.R +104 -0
  126. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/mzTab2tsv_PSM.R +80 -0
  127. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCRIPTS/plot_trafo.R +126 -0
  128. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/THIRDPARTY/ReadMe.txt +9 -0
  129. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Hardkloer.ttd +109 -0
  130. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/LINUX/TPP_ProteinProphet.ttd +46 -0
  131. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/LINUX/mail.ttd +22 -0
  132. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/MSGFtoPercolator.ttd +30 -0
  133. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/MascotPercolator.ttd +42 -0
  134. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Percolator.ttd +29 -0
  135. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/QCExporter.ttd +51 -0
  136. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/RawDirConvert.ttd +25 -0
  137. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/ReadMe.txt +72 -0
  138. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Rscript_generic.ttd +42 -0
  139. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Rscript_mzTab2tsv_PEP.ttd +26 -0
  140. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Rscript_mzTab2tsv_PRT.ttd +26 -0
  141. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Rscript_mzTab2tsv_PSM.ttd +26 -0
  142. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Rscript_qcfigures_acc.ttd +30 -0
  143. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Rscript_qcfigures_idmap.ttd +33 -0
  144. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Rscript_qcfigures_rt_acc.ttd +30 -0
  145. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Rscript_qcfigures_setid.ttd +30 -0
  146. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Rscript_qcfigures_tic.ttd +30 -0
  147. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/Rscript_qcfigures_trapfill.ttd +30 -0
  148. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/TEMPLATE.ttd_ +52 -0
  149. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/TPP_RefreshParser.ttd +28 -0
  150. media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/TOOLS/EXTERNAL/WINDOWS/TPP_ProteinProphet.ttd +46 -0
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+ <?xml version="1.0" encoding="UTF-8"?>
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+ <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" elementFormDefault="qualified" attributeFormDefault="unqualified">
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+ <xs:element name="PARAMETERS">
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+ <xs:annotation>
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+ <xs:documentation>Main parameters node.</xs:documentation>
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+ </xs:annotation>
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+ <xs:complexType>
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+ <xs:sequence>
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+ <xs:group ref="ITEMS" minOccurs="0" maxOccurs="unbounded">
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+ <xs:annotation>
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+ <xs:documentation>A group that encapsulates items and item lists</xs:documentation>
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+ </xs:annotation>
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+ </xs:group>
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+ <xs:element ref="NODE" minOccurs="0" maxOccurs="unbounded">
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+ <xs:annotation>
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+ <xs:documentation>Sections used to bundle related parameters.</xs:documentation>
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+ </xs:annotation>
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+ </xs:element>
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+ </xs:sequence>
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+ <xs:attribute name="version" type="xs:string">
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+ <xs:annotation>
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+ <xs:documentation>Schema version, e.g. '1.1'. If it is missing, version 1.0 is assumed.</xs:documentation>
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+ </xs:annotation>
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+ </xs:attribute>
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+ </xs:complexType>
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+ </xs:element>
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+ <xs:element name="NODE">
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+ <xs:complexType>
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+ <xs:sequence>
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+ <xs:element ref="ITEM" minOccurs="0" maxOccurs="unbounded">
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+ <xs:annotation>
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+ <xs:documentation>Actual parameters enty.</xs:documentation>
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+ </xs:annotation>
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+ </xs:element>
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+ <xs:element ref="NODE" minOccurs="0" maxOccurs="unbounded">
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+ <xs:annotation>
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+ <xs:documentation>Sections used to bundle related parameters.</xs:documentation>
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+ </xs:annotation>
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+ </xs:element>
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+ </xs:sequence>
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+ <xs:attribute name="name" use="required">
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+ <xs:annotation>
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+ <xs:documentation>Name of the section.</xs:documentation>
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+ <xs:simpleType>
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+ <xs:restriction base="xs:string">
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+ </xs:simpleType>
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+ </xs:attribute>
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+ <xs:attribute name="description" type="xs:string" default=""/>
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+ </xs:complexType>
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+ </xs:element>
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+ <xs:element name="ITEM">
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+ <xs:complexType>
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+ <xs:attribute name="name" use="required">
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+ <xs:annotation>
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+ <xs:documentation>Name of the parameter.</xs:documentation>
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+ </xs:attribute>
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+ <xs:attribute name="type" use="required">
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+ <xs:annotation>
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+ <xs:documentation>Type of the parameter: 'string', 'int', 'float' or 'double'.</xs:documentation>
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+ <xs:simpleType>
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+ <xs:restriction base="xs:string">
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+ <xs:enumeration value="int"/>
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+ <xs:enumeration value="double"/>
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+ </xs:restriction>
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+ </xs:attribute>
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+ <xs:attribute name="value" type="xs:string" use="required">
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+ <xs:annotation>
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+ <xs:documentation>Value that must be compatible with the type.</xs:documentation>
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+ </xs:annotation>
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+ </xs:attribute>
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+ <xs:attribute name="description" type="xs:string" default="">
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+ <xs:annotation>
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+ <xs:documentation>Parameter desription. It should contain unit and valid range where applicable.</xs:documentation>
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+ </xs:annotation>
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+ </xs:attribute>
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+ <xs:attribute name="advanced" type="xs:boolean" default="false">
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+ <xs:annotation>
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+ <xs:documentation>Flag that determines if the parameter is always shown, or in 'advanced mode' only. This attribute is only used for displaying purposes.</xs:documentation>
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+ </xs:annotation>
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+ </xs:attribute>
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+ <xs:attribute name="restrictions" type="xs:string" default="">
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+ <xs:annotation>
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+ <xs:documentation>Restrictions for the value field. For numeric values the lower and upper boundary is given, e.g '[min]:[max]'. For string values a comma-separated list can be given, e.g. 'one,two,three'</xs:documentation>
97
+ </xs:annotation>
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+ </xs:attribute>
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+ </xs:complexType>
100
+ </xs:element>
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+ <xs:element name="ITEMLIST">
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+ <xs:complexType>
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+ <xs:sequence>
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+ <xs:element name="LISTITEM" minOccurs="0" maxOccurs="unbounded">
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+ <xs:annotation>
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+ <xs:documentation>Entry in the list</xs:documentation>
107
+ </xs:annotation>
108
+ <xs:complexType>
109
+ <xs:attribute name="value" type="xs:string" use="required">
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+ <xs:annotation>
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+ <xs:documentation>Value that must be compatible with the type.</xs:documentation>
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+ </xs:annotation>
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+ </xs:attribute>
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+ </xs:complexType>
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+ </xs:element>
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+ </xs:sequence>
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+ <xs:attribute name="name" use="required">
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+ <xs:annotation>
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+ <xs:documentation>Name of the parameter.</xs:documentation>
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+ </xs:annotation>
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+ <xs:simpleType>
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+ <xs:restriction base="xs:string">
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+ <xs:minLength value="1"/>
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+ </xs:restriction>
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+ </xs:simpleType>
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+ </xs:attribute>
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+ <xs:attribute name="type" use="required">
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+ <xs:annotation>
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+ <xs:documentation>Type of the parameter: 'string'.</xs:documentation>
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+ </xs:annotation>
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+ <xs:simpleType>
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+ <xs:restriction base="xs:string">
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+ <xs:enumeration value="string"/>
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+ </xs:restriction>
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+ </xs:simpleType>
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+ </xs:attribute>
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+ <xs:attribute name="description" type="xs:string" default="">
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+ <xs:annotation>
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+ <xs:documentation>Parameter desription. It should contain unit and valid range where applicable.</xs:documentation>
140
+ </xs:annotation>
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+ </xs:attribute>
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+ <xs:attribute name="advanced" type="xs:boolean" default="false">
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+ <xs:annotation>
144
+ <xs:documentation>Flag that determines if the parameter is always shown, or in 'advanced mode' only. This attribute is only used for displaying purposes.</xs:documentation>
145
+ </xs:annotation>
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+ </xs:attribute>
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+ <xs:attribute name="restrictions" type="xs:string" default="">
148
+ <xs:annotation>
149
+ <xs:documentation>Restrictions for the value field. For numeric values the lower and upper boundary is given, e.g '[min]:[max]'. For string values a comma-separated list can be given, e.g. 'one,two,three'</xs:documentation>
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+ </xs:annotation>
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+ </xs:attribute>
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+ </xs:complexType>
153
+ </xs:element>
154
+ <xs:group name="ITEMS">
155
+ <xs:choice>
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+ <xs:element ref="ITEM">
157
+ <xs:annotation>
158
+ <xs:documentation>A single-value item</xs:documentation>
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+ </xs:annotation>
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+ </xs:element>
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+ <xs:element ref="ITEMLIST">
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+ <xs:annotation>
163
+ <xs:documentation>A list of values of a certain type</xs:documentation>
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+ </xs:annotation>
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+ </xs:element>
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+ </xs:choice>
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+ </xs:group>
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+ </xs:schema>
media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_3.xsd ADDED
@@ -0,0 +1,173 @@
1
+ <?xml version="1.0" encoding="UTF-8"?>
2
+ <!-- Mit XMLSpy v2007 sp1 bearbeitet (http://www.altova.com) von Oliver Kohlbacher (Universität Tübingen) -->
3
+ <!-- Mit XMLSpy v2007 sp1 bearbeitet (http://www.altova.com) von Oliver Kohlbacher (Universität Tübingen) -->
4
+ <!-- Mit XMLSpy v2007 sp1 bearbeitet (http://www.altova.com) von Oliver Kohlbacher (Universität Tübingen) -->
5
+ <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" elementFormDefault="qualified" attributeFormDefault="unqualified">
6
+ <xs:element name="PARAMETERS">
7
+ <xs:annotation>
8
+ <xs:documentation>Main parameters node.</xs:documentation>
9
+ </xs:annotation>
10
+ <xs:complexType>
11
+ <xs:sequence>
12
+ <xs:group ref="ITEMS" minOccurs="0" maxOccurs="unbounded">
13
+ <xs:annotation>
14
+ <xs:documentation>A group that encapsulates items and item lists</xs:documentation>
15
+ </xs:annotation>
16
+ </xs:group>
17
+ <xs:element ref="NODE" minOccurs="0" maxOccurs="unbounded">
18
+ <xs:annotation>
19
+ <xs:documentation>Sections used to bundle related parameters.</xs:documentation>
20
+ </xs:annotation>
21
+ </xs:element>
22
+ </xs:sequence>
23
+ <xs:attribute name="version" type="xs:float">
24
+ <xs:annotation>
25
+ <xs:documentation>Schema version, e.g. '1.1'. If it is missing, version 1.0 is assumed.</xs:documentation>
26
+ </xs:annotation>
27
+ </xs:attribute>
28
+ </xs:complexType>
29
+ </xs:element>
30
+ <xs:element name="NODE">
31
+ <xs:complexType>
32
+ <xs:sequence>
33
+ <xs:group ref="ITEMS" minOccurs="0" maxOccurs="unbounded">
34
+ <xs:annotation>
35
+ <xs:documentation>A group that encapsulates items and item lists</xs:documentation>
36
+ </xs:annotation>
37
+ </xs:group>
38
+ <xs:element ref="NODE" minOccurs="0" maxOccurs="unbounded">
39
+ <xs:annotation>
40
+ <xs:documentation>Sections used to bundle related parameters.</xs:documentation>
41
+ </xs:annotation>
42
+ </xs:element>
43
+ </xs:sequence>
44
+ <xs:attribute name="name" use="required">
45
+ <xs:annotation>
46
+ <xs:documentation>Name of the section.</xs:documentation>
47
+ </xs:annotation>
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+ <xs:simpleType>
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+ <xs:restriction base="xs:string">
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+ <xs:minLength value="1"/>
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+ </xs:simpleType>
53
+ </xs:attribute>
54
+ <xs:attribute name="description" type="xs:string" default=""/>
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+ </xs:complexType>
56
+ </xs:element>
57
+ <xs:element name="ITEM">
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+ <xs:complexType>
59
+ <xs:attribute name="name" use="required">
60
+ <xs:annotation>
61
+ <xs:documentation>Name of the parameter.</xs:documentation>
62
+ </xs:annotation>
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+ <xs:simpleType>
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+ <xs:restriction base="xs:string">
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+ <xs:minLength value="1"/>
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+ </xs:restriction>
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+ </xs:simpleType>
68
+ </xs:attribute>
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+ <xs:attribute name="type" use="required">
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+ <xs:annotation>
71
+ <xs:documentation>Type of the parameter: 'string', 'int', 'float' or 'double'.</xs:documentation>
72
+ </xs:annotation>
73
+ <xs:simpleType>
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+ <xs:restriction base="xs:string">
75
+ <xs:enumeration value="int"/>
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+ <xs:enumeration value="float"/>
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+ <xs:enumeration value="double"/>
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+ <xs:enumeration value="string"/>
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+ </xs:restriction>
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+ </xs:simpleType>
81
+ </xs:attribute>
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+ <xs:attribute name="value" type="xs:string" use="required">
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+ <xs:annotation>
84
+ <xs:documentation>Value that must be compatible with the type.</xs:documentation>
85
+ </xs:annotation>
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+ </xs:attribute>
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+ <xs:attribute name="description" type="xs:string" default="">
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+ <xs:annotation>
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+ <xs:documentation>Parameter desription. It should contain unit and valid range where applicable.</xs:documentation>
90
+ </xs:annotation>
91
+ </xs:attribute>
92
+ <xs:attribute name="tags" type="xs:string" default="false">
93
+ <xs:annotation>
94
+ <xs:documentation>Comma-separated list of tags. The 'advanced' tag determines if the parameter is always shown, or only in 'advanved' mode.</xs:documentation>
95
+ </xs:annotation>
96
+ </xs:attribute>
97
+ <xs:attribute name="restrictions" type="xs:string" default="">
98
+ <xs:annotation>
99
+ <xs:documentation>Restrictions for the value field. For numeric values the lower and upper boundary is given, e.g '[min]:[max]'. For string values a comma-separated list can be given, e.g. 'one,two,three'</xs:documentation>
100
+ </xs:annotation>
101
+ </xs:attribute>
102
+ </xs:complexType>
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+ </xs:element>
104
+ <xs:element name="ITEMLIST">
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+ <xs:complexType>
106
+ <xs:sequence>
107
+ <xs:element name="LISTITEM" minOccurs="0" maxOccurs="unbounded">
108
+ <xs:annotation>
109
+ <xs:documentation>Entry in the list</xs:documentation>
110
+ </xs:annotation>
111
+ <xs:complexType>
112
+ <xs:attribute name="value" type="xs:string" use="required">
113
+ <xs:annotation>
114
+ <xs:documentation>Value that must be compatible with the type.</xs:documentation>
115
+ </xs:annotation>
116
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117
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118
+ </xs:element>
119
+ </xs:sequence>
120
+ <xs:attribute name="name" use="required">
121
+ <xs:annotation>
122
+ <xs:documentation>Name of the parameter.</xs:documentation>
123
+ </xs:annotation>
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+ <xs:simpleType>
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+ <xs:restriction base="xs:string">
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+ <xs:minLength value="1"/>
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+ </xs:simpleType>
129
+ </xs:attribute>
130
+ <xs:attribute name="type" use="required">
131
+ <xs:annotation>
132
+ <xs:documentation>Type of the parameter: 'string', 'int' or 'float'.</xs:documentation>
133
+ </xs:annotation>
134
+ <xs:simpleType>
135
+ <xs:restriction base="xs:string">
136
+ <xs:enumeration value="string"/>
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+ <xs:enumeration value="int"/>
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+ </xs:restriction>
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+ </xs:simpleType>
141
+ </xs:attribute>
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+ <xs:attribute name="description" type="xs:string" default="">
143
+ <xs:annotation>
144
+ <xs:documentation>Parameter desription. It should contain unit and valid range where applicable.</xs:documentation>
145
+ </xs:annotation>
146
+ </xs:attribute>
147
+ <xs:attribute name="tags" type="xs:string" default="false">
148
+ <xs:annotation>
149
+ <xs:documentation>Comma-separated list of tags. The 'advanced' tag determines if the parameter is always shown, or only in 'advanved' mode.</xs:documentation>
150
+ </xs:annotation>
151
+ </xs:attribute>
152
+ <xs:attribute name="restrictions" type="xs:string" default="">
153
+ <xs:annotation>
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+ <xs:documentation>Restrictions for the value field. For numeric values the lower and upper boundary is given, e.g '[min]:[max]'. For string values a comma-separated list can be given, e.g. 'one,two,three'</xs:documentation>
155
+ </xs:annotation>
156
+ </xs:attribute>
157
+ </xs:complexType>
158
+ </xs:element>
159
+ <xs:group name="ITEMS">
160
+ <xs:choice>
161
+ <xs:element ref="ITEM">
162
+ <xs:annotation>
163
+ <xs:documentation>A single-value item</xs:documentation>
164
+ </xs:annotation>
165
+ </xs:element>
166
+ <xs:element ref="ITEMLIST">
167
+ <xs:annotation>
168
+ <xs:documentation>A list of values of a certain type</xs:documentation>
169
+ </xs:annotation>
170
+ </xs:element>
171
+ </xs:choice>
172
+ </xs:group>
173
+ </xs:schema>
media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_4.xsd ADDED
@@ -0,0 +1,149 @@
1
+ <?xml version="1.0" encoding="UTF-8"?>
2
+ <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
3
+ elementFormDefault="qualified" attributeFormDefault="unqualified">
4
+ <xs:element name="PARAMETERS" type="PARAMETERSType">
5
+ <xs:annotation>
6
+ <xs:documentation>Main parameters node.</xs:documentation>
7
+ </xs:annotation>
8
+ </xs:element>
9
+ <xs:element name="NODE" type="NODEType">
10
+ </xs:element>
11
+ <xs:element name="ITEM" type="ITEMType">
12
+ </xs:element>
13
+ <xs:element name="ITEMLIST" type="ITEMLISTType">
14
+ </xs:element>
15
+ <xs:group name="ITEMS">
16
+ <xs:choice>
17
+ <xs:element ref="ITEM">
18
+ <xs:annotation>
19
+ <xs:documentation>A single-value item</xs:documentation>
20
+ </xs:annotation>
21
+ </xs:element>
22
+ <xs:element ref="ITEMLIST">
23
+ <xs:annotation>
24
+ <xs:documentation>A list of values of a certain type
25
+ </xs:documentation>
26
+ </xs:annotation>
27
+ </xs:element>
28
+ </xs:choice>
29
+ </xs:group>
30
+ <xs:complexType name="PARAMETERSType">
31
+ <xs:sequence>
32
+ <xs:group minOccurs="0" maxOccurs="unbounded" ref="ITEMS">
33
+ <xs:annotation></xs:annotation>
34
+ </xs:group>
35
+ <xs:element minOccurs="0" maxOccurs="unbounded" ref="NODE">
36
+ <xs:annotation></xs:annotation>
37
+ </xs:element>
38
+ </xs:sequence>
39
+ <xs:attribute name="version" type="xs:float">
40
+ <xs:annotation></xs:annotation>
41
+ </xs:attribute>
42
+ </xs:complexType>
43
+ <xs:simpleType name="PossibleITEMType">
44
+ <xs:annotation>
45
+ <xs:documentation>Defines the possible types available in the type attribute of ITEM and ITEMLIST.</xs:documentation>
46
+ </xs:annotation>
47
+ <xs:restriction base="xs:string">
48
+ <xs:enumeration value="int"></xs:enumeration>
49
+ <xs:enumeration value="float"></xs:enumeration>
50
+ <xs:enumeration value="double"></xs:enumeration>
51
+ <xs:enumeration value="string"></xs:enumeration>
52
+ <xs:enumeration value="int-pair"></xs:enumeration>
53
+ <xs:enumeration value="double-pair"></xs:enumeration>
54
+ </xs:restriction>
55
+ </xs:simpleType>
56
+ <xs:complexType name="NODEType">
57
+ <xs:annotation>
58
+ <xs:documentation></xs:documentation>
59
+ </xs:annotation>
60
+ <xs:sequence>
61
+ <xs:group minOccurs="0" maxOccurs="unbounded" ref="ITEMS">
62
+ <xs:annotation></xs:annotation>
63
+ </xs:group>
64
+ <xs:element minOccurs="0" maxOccurs="unbounded" ref="NODE">
65
+ <xs:annotation></xs:annotation>
66
+ </xs:element>
67
+ </xs:sequence>
68
+ <xs:attribute use="required" name="name">
69
+ <xs:annotation></xs:annotation>
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+ <xs:simpleType>
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+ <xs:restriction base="xs:string">
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+ <xs:minLength value="1"></xs:minLength>
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+ </xs:restriction>
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+ </xs:simpleType>
75
+ </xs:attribute>
76
+ <xs:attribute default="" name="description" type="xs:string"></xs:attribute>
77
+ </xs:complexType>
78
+ <xs:complexType name="ITEMLISTType">
79
+ <xs:sequence>
80
+ <xs:element minOccurs="0" maxOccurs="unbounded"
81
+ name="LISTITEM" type="LISTITEMType">
82
+ <xs:annotation></xs:annotation>
83
+ </xs:element>
84
+ </xs:sequence>
85
+ <xs:attribute use="required" name="name">
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+ <xs:annotation></xs:annotation>
87
+ <xs:simpleType>
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+ <xs:restriction base="xs:string">
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+ <xs:minLength value="1"></xs:minLength>
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+ </xs:restriction>
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+ </xs:simpleType>
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+ </xs:attribute>
93
+ <xs:attribute use="required" name="type"
94
+ type="PossibleITEMType">
95
+ <xs:annotation></xs:annotation>
96
+ </xs:attribute>
97
+ <xs:attribute default="" name="description" type="xs:string">
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+ <xs:annotation></xs:annotation>
99
+ </xs:attribute>
100
+ <xs:attribute default="false" name="tags" type="xs:string">
101
+ <xs:annotation></xs:annotation>
102
+ </xs:attribute>
103
+ <xs:attribute default="" name="restrictions" type="xs:string">
104
+ <xs:annotation></xs:annotation>
105
+ </xs:attribute>
106
+ <xs:attribute name="supported_formats" type="xs:string"></xs:attribute>
107
+ </xs:complexType>
108
+ <xs:complexType name="LISTITEMType">
109
+ <xs:attribute use="required" name="value" type="xs:string">
110
+ <xs:annotation></xs:annotation>
111
+ </xs:attribute>
112
+ </xs:complexType>
113
+ <xs:complexType name="ITEMType">
114
+ <xs:attribute use="required" name="name">
115
+ <xs:annotation></xs:annotation>
116
+ <xs:simpleType>
117
+ <xs:restriction base="xs:string">
118
+ <xs:minLength value="1"></xs:minLength>
119
+ </xs:restriction>
120
+ </xs:simpleType>
121
+ </xs:attribute>
122
+ <xs:attribute use="required" name="type" type="PossibleITEMType">
123
+ <xs:annotation>
124
+ <xs:documentation>The type of the specified ITEM.</xs:documentation>
125
+ </xs:annotation>
126
+ </xs:attribute>
127
+ <xs:attribute use="required" name="value" type="xs:string">
128
+ <xs:annotation></xs:annotation>
129
+ </xs:attribute>
130
+ <xs:attribute default="" name="description" type="xs:string">
131
+ <xs:annotation></xs:annotation>
132
+ </xs:attribute>
133
+ <xs:attribute default="false" name="tags" type="xs:string">
134
+ <xs:annotation></xs:annotation>
135
+ </xs:attribute>
136
+ <xs:attribute default="" name="restrictions" type="xs:string">
137
+ <xs:annotation></xs:annotation>
138
+ </xs:attribute>
139
+ <xs:attribute default="false" name="supported_formats"
140
+ type="xs:string">
141
+ <xs:annotation></xs:annotation>
142
+ </xs:attribute>
143
+ <xs:attribute default="false" name="output_format_source"
144
+ type="xs:string">
145
+ <xs:annotation></xs:annotation>
146
+ </xs:attribute>
147
+ </xs:complexType>
148
+ </xs:schema>
149
+
media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/SCHEMAS/Param_1_6_2.xsd ADDED
@@ -0,0 +1,99 @@
1
+ <?xml version="1.0" encoding="UTF-8"?>
2
+ <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" elementFormDefault="qualified" attributeFormDefault="unqualified">
3
+ <xs:element name="PARAMETERS" type="PARAMETERSType">
4
+ <xs:annotation>
5
+ <xs:documentation>Main parameters node.</xs:documentation>
6
+ </xs:annotation>
7
+ </xs:element>
8
+ <xs:complexType name="PARAMETERSType">
9
+ <xs:sequence>
10
+ <xs:group ref="ITEMS" minOccurs="0" maxOccurs="unbounded"/>
11
+ <xs:element name="NODE" type="NODEType" minOccurs="0" maxOccurs="unbounded"/>
12
+ </xs:sequence>
13
+ <xs:attribute name="version" type="versionString"/>
14
+ </xs:complexType>
15
+ <xs:complexType name="AbstractITEMType" abstract="true">
16
+ <xs:attribute name="name" use="required">
17
+ <xs:simpleType>
18
+ <xs:restriction base="xs:string">
19
+ <xs:minLength value="1"/>
20
+ </xs:restriction>
21
+ </xs:simpleType>
22
+ </xs:attribute>
23
+ <xs:attribute name="type" type="PossibleITEMType" use="required">
24
+ <xs:annotation>
25
+ <xs:documentation>The type of the specified ITEM. Either input or output.</xs:documentation>
26
+ </xs:annotation>
27
+ </xs:attribute>
28
+ <xs:attribute name="description" type="xs:string" default=""/>
29
+ <xs:attribute name="tags" type="xs:string" default="false"/>
30
+ <xs:attribute name="restrictions" type="xs:string" default=""/>
31
+ <xs:attribute name="supported_formats" type="xs:string" default="false"/>
32
+ <xs:attribute name="required" type="xs:boolean" default="false" />
33
+ <xs:attribute name="advanced" type="xs:boolean" default="false" />
34
+ </xs:complexType>
35
+ <xs:complexType name="ITEMLISTType">
36
+ <xs:complexContent>
37
+ <xs:extension base="AbstractITEMType">
38
+ <xs:sequence>
39
+ <xs:element name="LISTITEM" type="LISTITEMType" minOccurs="0" maxOccurs="unbounded"/>
40
+ </xs:sequence>
41
+ </xs:extension>
42
+ </xs:complexContent>
43
+ </xs:complexType>
44
+ <xs:complexType name="LISTITEMType">
45
+ <xs:attribute name="value" use="required"/>
46
+ </xs:complexType>
47
+ <xs:complexType name="ITEMType">
48
+ <xs:complexContent>
49
+ <xs:extension base="AbstractITEMType">
50
+ <xs:attribute name="value" type="xs:string" use="required"/>
51
+ </xs:extension>
52
+ </xs:complexContent>
53
+ </xs:complexType>
54
+ <xs:simpleType name="PossibleITEMType">
55
+ <xs:annotation>
56
+ <xs:documentation>Defines the possible types available in the type attribute of ITEM and ITEMLIST.</xs:documentation>
57
+ </xs:annotation>
58
+ <xs:restriction base="xs:string">
59
+ <xs:enumeration value="int"></xs:enumeration>
60
+ <xs:enumeration value="double"></xs:enumeration>
61
+ <xs:enumeration value="float"></xs:enumeration>
62
+ <xs:enumeration value="string"></xs:enumeration>
63
+ <xs:enumeration value="int-pair"></xs:enumeration>
64
+ <xs:enumeration value="double-pair"></xs:enumeration>
65
+ <xs:enumeration value="input-prefix"></xs:enumeration>
66
+ <xs:enumeration value="output-prefix"></xs:enumeration>
67
+ <xs:enumeration value="input-file"></xs:enumeration>
68
+ <xs:enumeration value="output-file"></xs:enumeration>
69
+ </xs:restriction>
70
+ </xs:simpleType>
71
+ <xs:group name="ITEMS">
72
+ <xs:choice>
73
+ <xs:element name="ITEM" type="ITEMType"/>
74
+ <xs:element name="ITEMLIST" type="ITEMLISTType"/>
75
+ </xs:choice>
76
+ </xs:group>
77
+ <xs:complexType name="NODEType">
78
+ <xs:annotation>
79
+ <xs:documentation/>
80
+ </xs:annotation>
81
+ <xs:choice minOccurs="0" maxOccurs="unbounded">
82
+ <xs:group ref="ITEMS"/>
83
+ <xs:element name="NODE" type="NODEType"/>
84
+ </xs:choice>
85
+ <xs:attribute name="name" use="required">
86
+ <xs:simpleType>
87
+ <xs:restriction base="xs:string">
88
+ <xs:minLength value="1"/>
89
+ </xs:restriction>
90
+ </xs:simpleType>
91
+ </xs:attribute>
92
+ <xs:attribute name="description" type="xs:string" default=""/>
93
+ </xs:complexType>
94
+ <xs:simpleType name="versionString">
95
+ <xs:restriction base="xs:string">
96
+ <xs:pattern value="\d+\.\d+(\.\d+)?"></xs:pattern>
97
+ </xs:restriction>
98
+ </xs:simpleType>
99
+ </xs:schema>