pyopenms 2.3.0__zip

media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPAS.appdata.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<component type="desktop">
+ <id>TOPPAS.desktop</id>
+ <metadata_license>BSD-3-Clause</metadata_license>
+ <project_license>BSD-3-Clause</project_license>
+ <name>TOPPAS</name>
+ <summary>Pipeline editor of OpenMS (a mass spectrometry (MS) software for Proteomics and Metabolomics)</summary>
+ <description>
+  <p>
+   TOPPAS is the OpenMS TOPP Pipeline Assistant. It can create processing pipelines
+   using OpenMS TOPP tools as building blocks.
+  </p>
+  <p>
+   OpenMS is a powerful set of tools as well as a C++ library to
+   process low and high-resolution LC-MS(-MS) mass spectrometry data.
+  </p>
+  <p>
+   OpenMS is modular, consisting of more than 80 chainable TOPP tools (executables).
+   It features a graphical data viewer (TOPPView), a pipeline editor (TOPPAS) and
+   wrappers for most tandem-MS search engines (like Mascot, MSGF+ and X!Tandem).
+   The OpenMS library itself comes with Python bindings for rapid prototyping.
+  </p>
+ </description>
+ <screenshots>
+  <screenshot type="default">
+   <image>http://www.openms.de/current_doxygen/html/TOPPAS_simple_example.png</image>
+   <caption>A simple example pipeline created in TOPPAS and successfully executed.</caption>
+  </screenshot>
+ </screenshots>
+ <url type="homepage">http://www.openms.de</url>
+ <updatecontact>open-ms-developers@lists.sourceforge.net</updatecontact>
+ <project_group></project_group>
+</component>

media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPAS.desktop

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+[Desktop Entry]
+Name=TOPPAS
+Categories=Science;Biology;Chemistry;
+Comment=an workflow engine for mass spectrometry data analysis
+Exec=TOPPAS %U
+Icon=/usr/share/pixmaps/TOPPAS.xpm
+Terminal=false
+Type=Application
+StartupNotify=true  
+Name[fr_FR]=TOPPAS

media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPView.appdata.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<component type="desktop">
+ <id>TOPPView.desktop</id>
+ <metadata_license>BSD-3-Clause</metadata_license>
+ <project_license>BSD-3-Clause</project_license>
+ <name>TOPPView</name>
+ <summary>OpenMS' viewer for mass spectrometry (MS) data from Proteomics and Metabolomics</summary>
+ <description>
+  <p>
+   TOPPView is a viewer for MS and HPLC-MS data supporting many common formats, e.g. mzML, mzData, mzXML and several others.
+   The viewer supports 1D, 2D, 3D views, zooming, distance measurements and data annotations.
+   It also allows to run many OpenMS TOPP tools and immediately inspect the data.
+  </p>
+  <p>
+   OpenMS is a powerful set of tools as well as a C++ library to
+   process low and high-resolution LC-MS(-MS) mass spectrometry data.
+  </p>
+  <p>
+   OpenMS is modular, consisting of more than 80 chainable tools (executables).
+   It features a graphical data viewer (TOPPView), a pipeline editor (TOPPAS) and
+   wrappers for most tandem-MS search engines (like Mascot, MSGF+ and X!Tandem).
+   The OpenMS library itself comes with Python bindings for rapid prototyping.
+  </p>
+ </description>
+ <screenshots>
+  <screenshot type="default">
+   <image>http://www.openms.de/current_doxygen/html/TOPPView.png</image>
+   <caption>TOPPView is a viewer for MS and HPLC-MS data supporting many common formats, e.g. mzML, mzData, mzXML and several others.
+            The figure shows two instances of TOPPView displaying a HPLC-MS map and a MS raw spectrum.</caption>
+  </screenshot>
+ </screenshots>
+ <url type="homepage">http://www.openms.de</url>
+ <updatecontact>open-ms-developers@lists.sourceforge.net</updatecontact>
+ <project_group></project_group>
+</component>

media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/DESKTOP/TOPPView.desktop

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+[Desktop Entry]
+Name=TOPPView
+Categories=Science;Biology;Chemistry;
+Comment=viewer for mass spectrometry data
+Exec=TOPPView %U
+Icon=/usr/share/pixmaps/TOPPView.xpm
+Terminal=false
+Type=Application
+StartupNotify=true  
+Name[fr_FR]=TOPPView
+

media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/DESKTOP/readme.txt

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+The files in this directory represent meta-data files required for some Linux distributions 
+and their packaging mechanics.
+
+For details on the *.appdata.xml files see:
+https://fedoraproject.org/wiki/Packaging:AppData

media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/GUISTYLE/qtStyleSheet.qss

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+
+/* for ALL widgets where items can be selected: make background more prominent when they loose focus (i.e. are not active) */
+
+*::item:selected:!active{
+  background-color: lightblue;
+}
+
+/* more customizations here */
+  

media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/IDPool/README

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+This is the text file based OpenMS DocumentID pool.
+
+*** General Information ***
+
+By default the file IDPool.txt in this directory is used as ID pool by the TOPP tools capable of
+assigning DocumentID's.
+The file format is very simple: one line equals one unique ID.
+e.g.
+>>> IDPool.txt:
+ABC123
+ABC124
+ABC125
+<<< END IDPool.txt
+
+However the default ID pool file is *empty*.
+
+OpenMS will issue a warning once the ID pool file reaches a critical low level of five(5) remaining IDs.
+
+
+*** Using other ID Pool files ***
+
+If you wish to use another file as IDPool set the
+environment variable OPENMS_IDPOOL_FILE to the appropriate file path before calling the TOPP tool.
+
+
+*** Anticipated problems ***
+
+On Linux, some older kernels do not support file locking on remote network drives. If you happen to have OpenMS installed
+on a network drive and experience problems, try using a local file as ID pool (just set OPENMS_IDPOOL_FILE environment variable).

media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/MAPPING/TraML-mapping.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<CvMapping xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="http://www.psidev.info/files/validator/CvMapping.xsd"
+  modelName="TraML.xsd" modelURI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/TraML/schema/TraML0.9.3.xsd" modelVersion="0.9.3">
+
+    <CvReferenceList>
+        <CvReference cvName="PSI-MS" cvIdentifier="MS"/>
+        <CvReference cvName="UO" cvIdentifier="UO"/>
+        <CvReference cvName="UNIMOD" cvIdentifier="UNIMOD"/>
+    </CvReferenceList>
+
+    <CvMappingRuleList>
+
+        <!-- sourceFile -->
+        <CvMappingRule id="sourceFile_must" cvElementPath="/TraML/SourceFileList/SourceFile/cvParam/@accession" requirementLevel="MUST" scopePath="/TraML/SourceFileList/SourceFile" cvTermsCombinationLogic="AND" >
+            <CvTerm termAccession="MS:1001459" useTermName="false" useTerm="true" termName="file format" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS" />
+        </CvMappingRule>
+        <CvMappingRule id="sourceFile_may" cvElementPath="/TraML/SourceFileList/SourceFile/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/SourceFileList/SourceFile/cvParam" cvTermsCombinationLogic="OR" >
+            <CvTerm termAccession="MS:1000561" useTermName="false" useTerm="false" termName="data file checksum type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS" />
+        </CvMappingRule>
+
+        <!-- contact -->
+        <CvMappingRule id="contact_must" cvElementPath="/TraML/ContactList/Contact/cvParam/@accession" requirementLevel="MUST" scopePath="/TraML/ContactList/Contact" cvTermsCombinationLogic="AND" >
+            <CvTerm termAccession="MS:1000586" useTermName="false" useTerm="true" termName="contact name" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS" />
+            <CvTerm termAccession="MS:1000590" useTermName="false" useTerm="true" termName="contact organization" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS" />
+        </CvMappingRule>
+        <CvMappingRule id="contact_may" cvElementPath="/TraML/ContactList/Contact/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/ContactList/Contact/cvParam" cvTermsCombinationLogic="OR" >
+            <CvTerm termAccession="MS:1000585" useTermName="false" useTerm="false" termName="contact person attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS" />
+        </CvMappingRule>
+
+        <!-- publication  -->
+        <CvMappingRule id="publication_must" cvElementPath="/TraML/PublicationList/Publication/cvParam/@accession" requirementLevel="MUST" scopePath="/TraML/PublicationList/Publication" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000879" useTerm="true" termName="PubMed identifier" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- instrument  -->
+        <CvMappingRule id="instrument_must" cvElementPath="/TraML/InstrumentList/Instrument/cvParam/@accession" requirementLevel="MUST" scopePath="/TraML/InstrumentList/Instrument" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000031" useTerm="false" termName="instrument model" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- software-->
+        <CvMappingRule id="software_must" cvElementPath="/TraML/SoftwareList/Software/cvParam/@accession" requirementLevel="MUST" scopePath="/TraML/SoftwareList/Software" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000531" useTerm="false" termName="software" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- protein -->
+        <CvMappingRule id="protein_may" cvElementPath="/TraML/ProteinList/Protein/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/ProteinList/Protein" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="MS:1000884" useTerm="false" termName="protein attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- peptide -->
+        <CvMappingRule id="peptide_may" cvElementPath="/TraML/CompoundList/Peptide/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/CompoundList/Peptide" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="MS:1000863" useTerm="true" termName="predicted pI" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1001117" useTerm="true" termName="theoretical mass" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000890" useTerm="false" termName="peptide labeling state" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000893" useTerm="true" termName="peptide group label" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- modification -->
+        <CvMappingRule id="modification_may" cvElementPath="/TraML/CompoundList/Peptide/Modification/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/CompoundList/Peptide/Modification" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="UNIMOD:0" useTerm="false" termName="unimod root node" isRepeatable="true" allowChildren="true" cvIdentifierRef="UNIMOD"></CvTerm>
+        </CvMappingRule>
+
+        <!-- peptide retentionTime -->
+        <CvMappingRule id="peptide_retentionTime_may" cvElementPath="/TraML/CompoundList/Peptide/RetentionTimeList/RetentionTime/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/CompoundList/Peptide/RetentionTimeList/RetentionTime" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="MS:1000894" useTerm="false" termName="retention time" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000915" useTerm="false" termName="retention time window attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000901" useTerm="false" termName="retention time normalization standard" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- compound -->
+        <CvMappingRule id="compound_may" cvElementPath="/TraML/CompoundList/Compound/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/CompoundList/Compound" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="MS:1000863" useTerm="true" termName="predicted pI" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1001117" useTerm="true" termName="theoretical mass" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000864" useTerm="false" termName="chemical compound formula" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- compound retentionTime -->
+        <CvMappingRule id="compound_retentionTime_may" cvElementPath="/TraML/CompoundList/Compound/RetentionTimeList/RetentionTime/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/CompoundList/Compound/RetentionTimeList/RetentionTime" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="MS:1000894" useTerm="false" termName="retention time" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000915" useTerm="false" termName="retention time window attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000901" useTerm="false" termName="retention time normalization standard" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- transition precursor -->
+        <CvMappingRule id="transition_precursor_must" cvElementPath="/TraML/TransitionList/Transition/Precursor/cvParam/@accession" requirementLevel="MUST" scopePath="/TraML/TransitionList/Transition/Precursor" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000827" useTerm="true" termName="isolation window target m/z" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="transition_precursor_may" cvElementPath="/TraML/TransitionList/Transition/Precursor/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/TransitionList/Transition/Precursor" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000041" useTerm="true" termName="charge state" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- target include precursor -->
+        <CvMappingRule id="target_include_precursor_must" cvElementPath="/TraML/TargetList/TargetIncludeList/Target/Precursor/cvParam/@accession" requirementLevel="MUST" scopePath="/TraML/TargetList/TargetIncludeList/Target/Precursor" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000827" useTerm="true" termName="isolation window target m/z" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="target_include_precursor_may" cvElementPath="/TraML/TargetList/TargetIncludeList/Target/Precursor/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/TargetList/TargetIncludeList/Target/Precursor" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000041" useTerm="true" termName="charge state" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- target exclude precursor -->
+        <CvMappingRule id="target_exclude_precursor_must" cvElementPath="/TraML/TargetList/TargetExcludeList/Target/Precursor/cvParam/@accession" requirementLevel="MUST" scopePath="/TraML/TargetList/TargetExcludeList/Target/Precursor" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000827" useTerm="true" termName="isolation window target m/z" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="target_exclude_precursor_may" cvElementPath="/TraML/TargetList/TargetExcludeList/Target/Precursor/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/TargetList/TargetExcludeList/Target/Precursor" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000041" useTerm="true" termName="charge state" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- product -->
+        <CvMappingRule id="product_must" cvElementPath="/TraML/TransitionList/Transition/Product/cvParam/@accession" requirementLevel="MUST" scopePath="/TraML/TransitionList/Transition/Product" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000827" useTerm="true" termName="isolation window target m/z" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="product_may" cvElementPath="/TraML/TransitionList/Transition/Product/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/TransitionList/Transition/Product" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000041" useTerm="true" termName="charge state" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- interpretation -->
+        <CvMappingRule id="interpretation_must" cvElementPath="/TraML/TransitionList/Transition/InterpretationList/Interpretation/cvParam/@accession" requirementLevel="MUST" scopePath="/TraML/TransitionList/Transition/InterpretationList/Interpretation" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000926" useTerm="true" termName="product interpretation rank" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1001221" useTerm="false" termName="fragmentation information" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000903" useTerm="true" termName="product ion series ordinal" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="interpretation_may" cvElementPath="/TraML/TransitionList/Transition/InterpretationList/Interpretation/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/TransitionList/Transition/InterpretationList/Interpretation" cvTermsCombinationLogic="AND">
+            <CvTerm termAccession="MS:1000904" useTerm="true" termName="product ion m/z delta" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- prediction -->
+        <CvMappingRule id="prediction_may" cvElementPath="/TraML/TransitionList/Transition/Prediction/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/TransitionList/Transition/Prediction" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="MS:1000909" useTerm="false" termName="transition validation method" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000907" useTerm="true" termName="peak targeting suitability rank" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000042" useTerm="true" termName="peak intensity" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000906" useTerm="true" termName="peak intensity rank" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000443" useTerm="true" termName="mass analyzer type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000031" useTerm="true" termName="instrument model" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- validation -->
+        <CvMappingRule id="validation_may" cvElementPath="/TraML/TransitionList/Transition/ConfigurationList/Configuration/Validation/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/TransitionList/Transition/ConfigurationList/Configuration/Validation" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="MS:1000909" useTerm="false" termName="transition validation method" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000907" useTerm="true" termName="peak targeting suitability rank" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000042" useTerm="true" termName="peak intensity" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000906" useTerm="true" termName="peak intensity rank" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000031" useTerm="true" termName="instrument model" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- evidence -->
+        <CvMappingRule id="evidence_may" cvElementPath="/TraML/CompoundList/Peptide/Evidence/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/CompoundList/Peptide/Evidence" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="MS:1001100" useTerm="true" termName="confident peptide" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- transition configuration -->
+        <CvMappingRule id="transition_configuration_may" cvElementPath="/TraML/TransitionList/Transition/ConfigurationList/Configuration/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/TransitionList/Transition/ConfigurationList/Configuration" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="MS:1000502" useTerm="true" termName="dwell time" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000482" useTerm="false" termName="source attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000510" useTerm="false" termName="precursor activation attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- target configuration -->
+        <CvMappingRule id="target_configuration_may" cvElementPath="/TraML/TargetList/TargetIncludeList/Target/ConfigurationList/Configuration/cvParam/@accession" requirementLevel="MAY" scopePath="/TraML/TargetList/TargetIncludeList/Target/ConfigurationList/Configuration" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="MS:1000502" useTerm="true" termName="dwell time" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000482" useTerm="false" termName="source attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+            <CvTerm termAccession="MS:1000510" useTerm="false" termName="precursor activation attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- targetList -->
+        <CvMappingRule id="targetList_must" cvElementPath="/TraML/TargetList/cvParam/@accession" requirementLevel="MUST" scopePath="/TraML/TargetList" cvTermsCombinationLogic="OR">
+            <CvTerm termAccession="MS:1000919" useTerm="false" termName="target inclusion exclusion priority" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+
+    </CvMappingRuleList>
+</CvMapping>

media/doc/pyenv/py27_bleeding/lib/python2.7/site-packages/pyopenms/share/OpenMS/MAPPING/ms-mapping.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<?xml-stylesheet href="https://psidev.svn.sourceforge.net/svnroot/psidev/psi/tools/current/xsl/cv-mapping/CvMappingRules.xsl" type="text/xsl"?>
+<CvMapping xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="http://www.psidev.info/files/validator/CvMapping.xsd" modelName="mzML.xsd" modelURI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/schema/mzML1.0.0.xsd" modelVersion="1.0.0">
+
+    <CvReferenceList>
+      <CvReference cvName="PSI-MS" cvIdentifier="MS"/>
+      <CvReference cvName="Brenda" cvIdentifier="BTO"/>
+      <CvReference cvName="GO" cvIdentifier="GO"/>
+      <CvReference cvName="PATO" cvIdentifier="PATO"/>
+      <CvReference cvName="UO" cvIdentifier="UO"/>    
+    </CvReferenceList>
+
+    <CvMappingRuleList>
+
+        <!-- run -->
+        <CvMappingRule id="run_may" cvElementPath="/mzML/run/cvParam/@accession" requirementLevel="MAY"  scopePath="/mzML/run" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000857" useTerm="false" termName="run attribute" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule> 
+
+        <!-- file content -->
+        <CvMappingRule id="filecontent_must" cvElementPath="/mzML/fileDescription/fileContent/cvParam/@accession" requirementLevel="MUST"  scopePath="/mzML/fileDescription/fileContent" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000524" useTermName="false" useTerm="false" termName="data file content" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS" />
+        </CvMappingRule>
+        <CvMappingRule id="filecontent_may" cvElementPath="/mzML/fileDescription/fileContent/cvParam/@accession" requirementLevel="MAY"  scopePath="/mzML/fileDescription/fileContent" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000525" useTerm="false" termName="spectrum representation" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        
+        <!-- contact -->
+        <CvMappingRule id="contact_must" cvElementPath="/mzML/fileDescription/contact/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/fileDescription/contact" cvTermsCombinationLogic="AND" >
+          <CvTerm termAccession="MS:1000586" useTermName="false" useTerm="true" termName="contact name" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS" />
+          <CvTerm termAccession="MS:1000590" useTermName="false" useTerm="true" termName="contact organization" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS" />
+        </CvMappingRule>
+        <CvMappingRule id="contact_may" cvElementPath="/mzML/fileDescription/contact/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/fileDescription/contact/cvParam" cvTermsCombinationLogic="OR" >
+          <CvTerm termAccession="MS:1000585" useTermName="false" useTerm="false" termName="contact person attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS" />
+        </CvMappingRule>
+
+        <!-- source file -->
+        <CvMappingRule id="sourcefile_must" cvElementPath="/mzML/fileDescription/sourceFileList/sourceFile/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/fileDescription/sourceFileList/sourceFile" cvTermsCombinationLogic="AND" >
+          <CvTerm termAccession="MS:1000560" useTermName="false" useTerm="false" termName="mass spectrometer file format" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS" />
+          <CvTerm termAccession="MS:1000561" useTermName="false" useTerm="false" termName="data file checksum type" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS" />
+          <CvTerm termAccession="MS:1000767" useTermName="false" useTerm="false" termName="native spectrum identifier format" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS" />
+        </CvMappingRule>
+
+        <!-- sample -->
+        <CvMappingRule id="sample_may" cvElementPath="/mzML/sampleList/sample/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/sampleList/sample" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000548" useTerm="false" termName="sample attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="PATO:0001241" useTerm="false" termName="quality of an object" isRepeatable="true" allowChildren="true" cvIdentifierRef="PATO"></CvTerm>
+          <CvTerm termAccession="GO:0005575" useTerm="false" termName="cellular_component" isRepeatable="true" allowChildren="true" cvIdentifierRef="GO"></CvTerm>
+          <CvTerm termAccession="BTO:0000000" useTerm="false" termName="brenda source tissue ontology" isRepeatable="true" allowChildren="true" cvIdentifierRef="BTO"/>
+        </CvMappingRule>
+
+        <!-- instrument  -->
+        <CvMappingRule id="instrumentconfiguration_must" cvElementPath="/mzML/instrumentConfigurationList/instrumentConfiguration/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/instrumentConfigurationList/instrument" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000031" useTerm="true" termName="instrument model" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="instrumentconfiguration_may" cvElementPath="/mzML/instrumentConfigurationList/instrumentConfiguration/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/instrumentConfigurationList/instrument" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000496" useTerm="false" termName="instrument attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000597" useTerm="false" termName="ion optics type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000487" useTerm="false" termName="ion optics attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- source -->
+        <CvMappingRule id="source_must" cvElementPath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/source/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/source" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000008" useTerm="true" termName="ionization type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="source_may" cvElementPath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/source/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/source" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000007" useTerm="false" termName="inlet type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000482" useTerm="false" termName="source attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000841" useTerm="false" termName="laser attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"/>
+          <CvTerm termAccession="MS:1000842" useTerm="false" termName="laser type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"/>
+          <CvTerm termAccession="MS:1000832" useTerm="false" termName="MALDI matrix application" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"/>
+          <CvTerm termAccession="MS:1000833" useTerm="false" termName="matrix application type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"/>
+        </CvMappingRule>
+        
+        <!-- analyzer  -->
+        <CvMappingRule id="analyzer_must" cvElementPath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/analyzer/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/analyzer" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000443" useTerm="true" termName="mass analyzer type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="analyzer_may" cvElementPath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/analyzer/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/analyzer" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000480" useTerm="false" termName="mass analyzer attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        
+        <!-- detector -->
+        <CvMappingRule id="detector_must" cvElementPath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/detector/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/detector" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000026" useTerm="true" termName="detector type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="detector_may" cvElementPath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/detector/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/instrumentConfigurationList/instrumentConfiguration/componentList/detector" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000027" useTerm="false" termName="detector acquisition mode" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000481" useTerm="false" termName="detector attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <!-- end of instrument -->
+
+        <!-- software-->
+        <CvMappingRule id="software_must" cvElementPath="/mzML/softwareList/software/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/softwareList/software" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000531" useTerm="false" termName="software" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!--  data processing -->
+        <CvMappingRule id="processingmethod_must" cvElementPath="/mzML/dataProcessingList/dataProcessing/processingMethod/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/dataProcessingList/dataProcessing/processingMethod" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000452" useTerm="false" termName="data transformation" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="processingmethod_may" cvElementPath="/mzML/dataProcessingList/dataProcessing/processingMethod/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/dataProcessingList/dataProcessing/processingMethod" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000630" useTerm="false" termName="data processing parameter" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+    
+        <!-- spectrum  -->
+        <CvMappingRule id="spectrum_must" cvElementPath="/mzML/run/spectrumList/spectrum/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/run/spectrumList/spectrum" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000559" useTermName="false" useTerm="false" termName="spectrum type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000525" useTerm="true" termName="spectrum representation" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="spectrum_may" cvElementPath="/mzML/run/spectrumList/spectrum/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/run/spectrumList/spectrum" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000499" useTerm="false" termName="spectrum attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000465" useTerm="false" termName="scan polarity" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- scan -->
+        <CvMappingRule id="scan_must" cvElementPath="/mzML/run/spectrumList/spectrum/scanList/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/run/spectrumList/spectrum/scanList" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000570" useTerm="false" termName="spectra combination" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="scan_may" cvElementPath="/mzML/run/spectrumList/spectrum/scanList/scan/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/run/spectrumList/spectrum/scanList/scan" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000503" useTerm="false" termName="scan attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000018" useTerm="false" termName="scan direction" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000019" useTerm="false" termName="scan law" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+    
+        <!-- scan window -->
+        <CvMappingRule id="scanwindow_must" cvElementPath="/mzML/run/spectrumList/spectrum/scanList/scan/scanWindowList/scanWindow/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/run/spectrumList/spectrum/scanList/scan/scanWindowList/scanWindow" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000500" useTerm="true" termName="scan window upper limit" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000501" useTerm="true" termName="scan window lower limit" isRepeatable="false" allowChildren="false" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="scanwindow_may" cvElementPath="/mzML/run/spectrumList/spectrum/scanList/scan/scanWindowList/scanWindow/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/run/spectrumList/spectrum/scanList/scan/scanWindowList/scanWindow" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000549" useTerm="false" termName="selection window attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        
+        <!-- spectrum precursor list -->
+        <CvMappingRule id="precursor_selectedion_must" cvElementPath="/mzML/run/spectrumList/spectrum/precursorList/precursor/selectedIonList/selectedIon/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/run/spectrumList/spectrum/precursorList/precursor/selectedIonList/selectedIon" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000455" useTerm="false" termName="ion selection attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="precursor_activation_must" cvElementPath="/mzML/run/spectrumList/spectrum/precursorList/precursor/activation/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/run/spectrumList/spectrum/precursorList/precursor/activation" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000044" useTerm="true" termName="dissociation method" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="precursor_activation_may" cvElementPath="/mzML/run/spectrumList/spectrum/precursorList/precursor/activation/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/run/spectrumList/spectrum/precursorList/precursor/activation" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000510" useTerm="false" termName="precursor activation attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="precursor_isolationwindow_may" cvElementPath="/mzML/run/spectrumList/spectrum/precursorList/precursor/isolationWindow/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/run/spectrumList/spectrum/precursorList/precursor/isolationWindow" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000792" useTerm="false" termName="isolation window attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        
+        <!-- spectrum product list-->
+        <CvMappingRule id="product_isolationwindow_may" cvElementPath="/mzML/run/spectrumList/spectrum/productList/product/isolationWindow/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/run/spectrumList/spectrum/productList/product/isolationWindow" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000792" useTerm="false" termName="isolation window attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+                
+        <!-- spectrum binary data array -->
+        <CvMappingRule id="spectrum_binarydataarray_must" cvElementPath="/mzML/run/spectrumList/spectrum/binaryDataArrayList/binaryDataArray/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/run/spectrumList/spectrum/binaryDataArrayList/binaryDataArray" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000513" useTerm="false" termName="binary data array" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000518" useTerm="false" termName="binary data type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000572" useTerm="false" termName="binary data compression type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- chromatogram -->
+        <CvMappingRule id="chromatogram_must" cvElementPath="/mzML/run/chromatogramList/chromatogram/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/run/chromatogramList/chromatogram" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000626" useTermName="false" useTerm="false" termName="chromatogram type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        <CvMappingRule id="chromatogram_may" cvElementPath="/mzML/run/chromatogramList/chromatogram/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/run/chromatogramList/chromatogram" cvTermsCombinationLogic="OR">
+          <CvTerm termAccession="MS:1000808" useTerm="false" termName="chromatogram attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+
+        <!-- chromatogram precursor -->
+        <CvMappingRule id="chromatogram_precursor_isolationwindow_may" cvElementPath="/mzML/run/chromatogramList/chromatogram/precursor/isolationWindow/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/run/spectrumList/spectrum/precursorList/precursor/isolationWindow" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000792" useTerm="false" termName="isolation window attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+        
+        <!-- chromatogram product -->
+        <CvMappingRule id="chromatogram_product_isolationwindow_may" cvElementPath="/mzML/run/chromatogramList/chromatogram/product/isolationWindow/cvParam/@accession" requirementLevel="MAY" scopePath="/mzML/run/spectrumList/spectrum/productList/product/isolationWindow" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000792" useTerm="false" termName="isolation window attribute" isRepeatable="true" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+        </CvMappingRule>
+       
+        <!-- chromatogram binary data array -->
+        <CvMappingRule id="chromatogram_binarydataarray_must" cvElementPath="/mzML/run/chromatogramList/chromatogram/binaryDataArrayList/binaryDataArray/cvParam/@accession" requirementLevel="MUST" scopePath="/mzML/run/chromatogramList/chromatogram/binaryDataArrayList/binaryDataArray" cvTermsCombinationLogic="AND">
+          <CvTerm termAccession="MS:1000513" useTerm="false" termName="binary data array" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000518" useTerm="false" termName="binary data type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>
+          <CvTerm termAccession="MS:1000572" useTerm="false" termName="binary data compression type" isRepeatable="false" allowChildren="true" cvIdentifierRef="MS"></CvTerm>      
+        </CvMappingRule>
+
+    </CvMappingRuleList>
+</CvMapping>