pymodaq 3.6.13__py3-none-any.whl → 4.0.1__py3-none-any.whl

pymodaq/daq_scan.py

@@ -1,2160 +0,0 @@
-#!/usr/bin/env python
-# -*- coding: utf-8 -*-
-
-"""Automated scanning module functionalities for PyMoDAQ
-
-Contains all objects related to the DAQ_Scan module, to do automated scans, saving data...
-"""
-
-import sys
-from collections import OrderedDict
-import numpy as np
-from pathlib import Path
-import os
-
-import pymodaq.daq_utils.gui_utils.dock
-import pymodaq.daq_utils.gui_utils.file_io
-import pymodaq.daq_utils.gui_utils.utils
-import pymodaq.daq_utils.gui_utils.widgets.spinbox
-import pymodaq.daq_utils.messenger
-from pymodaq.daq_utils.config import Config, get_set_preset_path
-from pymodaq.daq_utils.managers.action_manager import QAction
-import pymodaq.daq_utils.parameter.ioxml
-
-from pyqtgraph.parametertree import Parameter, ParameterTree
-from qtpy import QtWidgets, QtCore, QtGui
-from qtpy.QtCore import QObject, Slot, QThread, Signal, QDateTime, QDate, QTime
-from pymodaq.daq_utils import exceptions
-from pymodaq.daq_utils.plotting.data_viewers.viewer2D import Viewer2D
-from pymodaq.daq_utils.plotting.data_viewers.viewer1D import Viewer1D
-from pymodaq.daq_utils.plotting.data_viewers.viewer1Dbasic import Viewer1DBasic
-from pymodaq.daq_utils.plotting.navigator import Navigator
-from pymodaq.daq_utils.scanner import Scanner, adaptive, adaptive_losses
-from pymodaq.daq_utils.managers.batchscan_manager import BatchScanner
-from pymodaq.daq_utils.managers.modules_manager import ModulesManager
-from pymodaq.daq_utils.gui_utils.widgets import QLED
-from pymodaq.daq_utils.messenger import messagebox
-
-from pymodaq.daq_utils import daq_utils as utils
-from pymodaq.daq_utils import gui_utils as gutils
-from pymodaq.daq_utils.h5modules import H5Saver
-
-config = Config()
-logger = utils.set_logger(utils.get_module_name(__file__))
-
-
-class DAQ_Scan(QObject):
-    """
-    Main class initializing a DAQ_Scan module with its dashboard and scanning control panel
-    """
-    command_DAQ_signal = Signal(list)
-    status_signal = Signal(str)
-    live_data_1D_signal = Signal(list)
-
-    params = [
-        {'title': 'Time Flow:', 'name': 'time_flow', 'type': 'group', 'expanded': False, 'children': [
-            {'title': 'Wait time step (ms)', 'name': 'wait_time', 'type': 'int', 'value': 0,
-             'tip': 'Wait time in ms after each step of acquisition (move and grab)'},
-            {'title': 'Wait time between (ms)', 'name': 'wait_time_between', 'type': 'int',
-             'value': 0,
-             'tip': 'Wait time in ms between move and grab processes'},
-            {'title': 'Timeout (ms)', 'name': 'timeout', 'type': 'int', 'value': 10000},
-        ]},
-        {'title': 'Scan options', 'name': 'scan_options', 'type': 'group', 'children': [
-            {'title': 'Naverage:', 'name': 'scan_average', 'type': 'int', 'value': 1, 'min': 1},
-            {'title': 'Plot from:', 'name': 'plot_from', 'type': 'list'},
-            {'title': 'Sort 1D scan data:', 'name': 'sort_scan1D', 'type': 'bool', 'value': False},]},
-    ]
-
-    def __init__(self, dockarea=None, dashboard=None, show_popup=True):
-        """
-
-        Parameters
-        ----------
-        dockarea: (dockarea) instance of the modified pyqtgraph Dockarea
-        dashboard: (DashBoard) instance of the pymodaq dashboard
-        """
-        
-        logger.info('Initializing DAQ_Scan')
-        super().__init__()
-        self.dockarea = dockarea
-        self.dashboard = dashboard
-        if dashboard is None:
-            raise Exception('No valid dashboard initialized')
-        self.mainwindow = self.dockarea.parent()
-
-        self.show_popup = show_popup  # used to deactivate popups when testing with pytest
-        self.wait_time = 1000
-        self.navigator = None
-        self.scan_x_axis = None
-        self.scan_y_axis = None
-        self.scan_data_1D = np.array([])
-        self.scan_data_1D_average = np.array([])
-        self.scan_data_2D = []
-        self.scan_data_2D_average = []
-        self.curvilinear_values = []
-        self.ind_scan = 0
-        self.ind_average = 0
-        self.scan_positions = []
-        self.scan_data_2D_to_save = []
-        self.scan_data_1D_to_save = []
-        self.plot_1D_ini = False
-        self.plot_2D_ini = False
-
-        self.scan_thread = None
-        self.modules_manager = ModulesManager(self.dashboard.detector_modules, self.dashboard.actuators_modules)
-
-        self.h5saver = H5Saver()
-        self.h5saver.settings.child(('do_save')).hide()
-        self.h5saver.settings.child(('custom_name')).hide()
-        self.h5saver.new_file_sig.connect(self.create_new_file)
-        self.h5arrays = OrderedDict([])
-
-        self.scanner = Scanner(actuators=self.modules_manager.actuators, adaptive_losses=adaptive_losses)
-        self.scan_parameters = None
-
-        self.batcher = None
-        self.batch_started = False
-        self.ind_batch = 0
-
-
-        self.modules_manager.actuators_changed[list].connect(self.update_actuators)
-        self.modules_manager.detectors_changed[list].connect(self.update_plot_det_items)
-
-        self.setupUI()
-        self.setup_modules(self.dashboard.title)
-        self.set_config()
-        self.scanner.set_config()
-
-        logger.info('DAQ_Scan Initialized')
-
-    ################
-    #  CONFIG/SETUP UI / EXIT
-
-    def set_config(self):
-        self.settings.child('time_flow', 'wait_time').setValue(config['scan']['timeflow']['wait_time'])
-        self.settings.child('time_flow', 'wait_time_between').setValue(config['scan']['timeflow']['wait_time'])
-        self.settings.child('time_flow', 'timeout').setValue(config['scan']['timeflow']['timeout'])
-
-        self.settings.child('scan_options',  'scan_average').setValue(config['scan']['Naverage'])
-        self.settings.child('scan_options', 'sort_scan1D').setValue(config['scan']['sort1D'])
-
-    def setup_modules(self, filename):
-        """
-
-        """
-        try:
-
-            ######################################################################
-            # set scan selector
-            items = OrderedDict()
-            if self.navigator is not None:
-                items["Navigator"] = dict(viewers=[self.navigator.viewer], names=["Navigator"])
-            for det in self.modules_manager.detectors_all:
-                if len([view for view in det.ui.viewers if view.viewer_type == 'Data2D']) != 0:
-                    items[det.title] = dict(viewers=[view for view in det.ui.viewers if view.viewer_type == 'Data2D'],
-                                            names=[view.title for view in det.ui.viewers if
-                                                   view.viewer_type == 'Data2D'], )
-            items["DAQ_Scan"] = dict(viewers=[self.ui.scan2D_graph], names=["DAQ_Scan"])
-
-            if self.navigator is not None:
-                items = OrderedDict(Navigator=dict(viewers=[self.navigator.viewer], names=["Navigator"]))
-                items.update(self.scanner.scan_selector.viewers_items)
-
-            self.scanner.viewers_items = items
-
-            self.scanner.scan_selector.widget.setVisible(False)
-            self.scanner.scan_selector.settings.child('scan_options', 'scan_type').hide()
-
-            self.scanner.scan_selector.widget.setVisible(False)
-            self.scanner.scan_selector.show_scan_selector(visible=False)
-
-            # setting moves and det in tree
-            preset_items_det = [mod for ind, mod in enumerate(self.modules_manager.detectors_all) if ind == 0]
-            self.settings.child('scan_options', 'plot_from').setLimits([mod.title for mod in preset_items_det])
-            if preset_items_det != []:
-                self.settings.child('scan_options', 'plot_from').setValue(preset_items_det[0].title)
-
-            self.show_average_dock(False)
-
-            self.ui.scan_dock.setEnabled(True)
-            self.file_menu.setEnabled(True)
-            self.settings_menu.setEnabled(True)
-            self.create_new_file(True)
-
-        except Exception as e:
-            logger.exception(str(e))
-            # self.update_status(getLineInfo()+str(e), self.wait_time, log_type='log')
-
-    def create_average_dock(self):
-        self.ui.average_dock = pymodaq.daq_utils.gui_utils.dock.Dock("Averaging")
-        average_tab = QtWidgets.QTabWidget()
-        average1D_widget = QtWidgets.QWidget()
-        average2D_widget = QtWidgets.QWidget()
-
-        # %% init the 1D viewer
-        self.ui.average1D_graph = Viewer1D(average1D_widget)
-
-        # %% init the 2D viewer
-        self.ui.average2D_graph = Viewer2D(average2D_widget)
-
-        average_tab.addTab(average1D_widget, '1D plot Average')
-        average_tab.addTab(average2D_widget, '2D plot Average')
-
-        self.ui.average_dock.addWidget(average_tab)
-        self.dockarea.addDock(self.ui.average_dock, 'right', self.ui.scan_dock)
-
-        self.ui.average_dock.setVisible(False)
-
-    def create_menu(self):
-        """
-        """
-        # %% create Settings menu
-
-        menubar = QtWidgets.QMenuBar()
-        menubar.setMaximumHeight(30)
-        self.ui.verticalLayout.insertWidget(0, menubar)
-
-        self.file_menu = menubar.addMenu('File')
-        load_action = self.file_menu.addAction('Load file')
-        load_action.triggered.connect(self.load_file)
-        self.file_menu.addSeparator()
-        save_action = self.file_menu.addAction('Save file as')
-        save_action.triggered.connect(self.save_file)
-        show_action = self.file_menu.addAction('Show file content')
-        show_action.triggered.connect(self.show_file_content)
-
-        self.settings_menu = menubar.addMenu('Settings')
-        action_navigator = self.settings_menu.addAction('Show Navigator')
-        action_navigator.triggered.connect(self.show_navigator)
-        action_batcher = self.settings_menu.addAction('Show Batch Scanner')
-        action_batcher.triggered.connect(lambda: self.show_batcher(menubar))
-
-    def quit_fun(self):
-        """
-            Quit the current instance of DAQ_scan and close on cascade move and detector modules.
-
-            See Also
-            --------
-            quit_fun
-        """
-        try:
-            self.h5saver.close_file()
-            self.ui.average_dock.close()
-            self.ui.scan_dock.close()
-            self.dockarea.close()
-
-        except Exception as e:
-            logger.exception(str(e))
-
-    def setupUI(self):
-        self.ui = QObject()
-        widgetsettings = QtWidgets.QWidget()
-        self.ui.verticalLayout = QtWidgets.QVBoxLayout()
-        widgetsettings.setLayout(self.ui.verticalLayout)
-        self.ui.StatusBarLayout = QtWidgets.QHBoxLayout()
-        self.ui.splitter = QtWidgets.QSplitter(QtCore.Qt.Horizontal)
-
-        self.ui.verticalLayout.addWidget(self.ui.splitter)
-        self.ui.verticalLayout.addLayout(self.ui.StatusBarLayout)
-
-        self.ui.horizontalLayout = QtWidgets.QHBoxLayout()
-        sett_widget = QtWidgets.QWidget()
-        self.ui.settings_layout = QtWidgets.QVBoxLayout()
-        sett_widget.setLayout(self.ui.settings_layout)
-        self.ui.horizontalLayout.addWidget(sett_widget)
-
-        # ###########################BUTTONS##################
-        widget_buttons = QtWidgets.QWidget()
-        self.ui.horizontalLayout_2 = QtWidgets.QHBoxLayout()
-        widget_buttons.setLayout(self.ui.horizontalLayout_2)
-
-        iconquit = QtGui.QIcon()
-        iconquit.addPixmap(QtGui.QPixmap(":/icons/Icon_Library/close2.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off)
-        self.ui.quit_pb = QtWidgets.QPushButton(iconquit, 'Quit')
-
-        iconstart = QtGui.QIcon()
-        iconstart.addPixmap(QtGui.QPixmap(":/icons/Icon_Library/run2.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off)
-        self.ui.start_scan_pb = QtWidgets.QPushButton(iconstart, '')
-        self.ui.start_scan_pb.setToolTip('Start Scan')
-
-        iconstop = QtGui.QIcon()
-        iconstop.addPixmap(QtGui.QPixmap(":/icons/Icon_Library/stop.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off)
-        self.ui.stop_scan_pb = QtWidgets.QPushButton(iconstop, '')
-        self.ui.stop_scan_pb.setToolTip('Stop Scan (or skip current one if Batch scan running)')
-
-        self.ui.set_scan_pb = QtWidgets.QPushButton('Set Scan')
-        self.ui.set_scan_pb.setToolTip('Process the scanner settings and prepare the modules for coming scan')
-        self.ui.set_ini_positions_pb = QtWidgets.QPushButton('Init Positions')
-        self.ui.set_ini_positions_pb.setToolTip(
-            'Set Move Modules to their initial position as defined in the current scan')
-
-        iconstartbatch = QtGui.QIcon()
-        iconstartbatch.addPixmap(QtGui.QPixmap(":/icons/Icon_Library/run_all.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off)
-        self.ui.start_batch_pb = QtWidgets.QPushButton(iconstartbatch, '')
-        self.ui.start_batch_pb.setToolTip('Start the batch of scans defined in the batch manager')
-        self.ui.start_batch_pb.setVisible(False)
-
-        self.ui.horizontalLayout_2.addWidget(self.ui.quit_pb)
-        self.ui.horizontalLayout_2.addStretch()
-        self.ui.horizontalLayout_2.addWidget(self.ui.set_scan_pb)
-        self.ui.horizontalLayout_2.addWidget(self.ui.set_ini_positions_pb)
-        self.ui.horizontalLayout_2.addWidget(self.ui.start_batch_pb)
-        self.ui.horizontalLayout_2.addWidget(self.ui.start_scan_pb)
-        self.ui.horizontalLayout_2.addWidget(self.ui.stop_scan_pb)
-
-        self.ui.settings_layout.addWidget(widget_buttons)
-        self.ui.splitter.addWidget(sett_widget)
-
-        # ##################TAB########################################
-        self.ui.tabWidget = QtWidgets.QTabWidget()
-
-        self.ui.tab_plot1D = QtWidgets.QWidget()
-        self.ui.scan1D_layout = QtWidgets.QVBoxLayout()
-        self.ui.tab_plot1D.setLayout(self.ui.scan1D_layout)
-
-        self.ui.tab_plot2D = QtWidgets.QWidget()
-        self.ui.scan2D_layout = QtWidgets.QVBoxLayout()
-        self.ui.tab_plot2D.setLayout(self.ui.scan2D_layout)
-
-        self.ui.tab_navigator = QtWidgets.QWidget()
-        self.ui.navigator_layout = QtWidgets.QVBoxLayout()
-        self.ui.tab_navigator.setLayout(self.ui.navigator_layout)
-
-        self.ui.tabWidget.addTab(self.ui.tab_plot1D, "")
-        self.ui.tabWidget.addTab(self.ui.tab_plot2D, "")
-        self.ui.tabWidget.addTab(self.ui.tab_navigator, "")
-        self.ui.tabWidget.setTabText(self.ui.tabWidget.indexOf(self.ui.tab_plot1D), '1D plot')
-        self.ui.tabWidget.setTabText(self.ui.tabWidget.indexOf(self.ui.tab_plot2D), '2D plot')
-        self.ui.tabWidget.setTabText(self.ui.tabWidget.indexOf(self.ui.tab_navigator), 'Navigator')
-
-        self.ui.splitter.addWidget(self.ui.tabWidget)
-        ##################################################################
-
-        # %% create scan dock and make it a floating window
-        self.ui.scan_dock = pymodaq.daq_utils.gui_utils.dock.Dock("Scan", size=(1, 1), autoOrientation=False)  # give this dock the minimum possible size
-        self.ui.scan_dock.setOrientation('vertical')
-        self.ui.scan_dock.addWidget(widgetsettings)
-
-        self.dockarea.addDock(self.ui.scan_dock, 'left')
-        #self.ui.scan_dock.float()
-
-        # %% init the 1D viewer
-        self.ui.scan1D_graph_widget = QtWidgets.QSplitter(orientation=QtCore.Qt.Vertical)
-        self.ui.scan1D_layout.addWidget(self.ui.scan1D_graph_widget)
-
-        scan1D_widget = QtWidgets.QWidget()
-        self.ui.scan1D_graph = Viewer1D(scan1D_widget)
-        self.ui.scan1D_graph_widget.addWidget(scan1D_widget)
-
-        # this subgraph is used to display axes values when performing scans as a function of multiple axes, and so
-        # impossible to plot in usual 1D or 2D graphs
-        scan1D_subgraph_widget = QtWidgets.QWidget()
-        self.ui.scan1D_subgraph = Viewer1DBasic(scan1D_subgraph_widget)
-        self.ui.scan1D_graph_widget.addWidget(scan1D_subgraph_widget)
-        self.ui.scan1D_subgraph.show(False)
-
-        # %% init the 2D viewer
-        self.ui.scan2D_graph_widget = QtWidgets.QSplitter(orientation=QtCore.Qt.Vertical)
-        self.ui.scan2D_layout.addWidget(self.ui.scan2D_graph_widget)
-
-        scan2D_graph_widget = QtWidgets.QWidget()
-        self.ui.scan2D_graph = Viewer2D(scan2D_graph_widget)
-        self.ui.scan2D_graph_widget.addWidget(scan2D_graph_widget)
-
-        # this subgraph is used to display axes values when performing scans as a function of multiple axes, and so
-        # impossible to plot in usual 1D or 2D graphs
-        scan2D_subgraph_widget = QtWidgets.QWidget()
-        self.ui.scan2D_subgraph = Viewer1DBasic(scan2D_subgraph_widget)
-        self.ui.scan2D_graph_widget.addWidget(scan2D_subgraph_widget)
-        self.ui.scan2D_subgraph.show(False)
-
-        self.ui.scan2D_graph.set_action_checked('histo', False)
-        self.ui.scan2D_graph.set_action_visible(['flip_ud', 'flip_lr', 'rotate'], False)
-        #self.ui.scan2D_graph.histogrammer.show_hide_histogram(False, [False for ind in range(3)])
-
-
-        self.move_to_crosshair_action = QAction(
-            QtGui.QIcon(QtGui.QPixmap(':/icons/Icon_Library/move_contour.png')),"Move at doubleClicked")
-        self.move_to_crosshair_action.setCheckable(True)
-        self.ui.move_to_crosshair_cb = self.move_to_crosshair_action
-
-        self.ui.scan2D_graph.toolbar.addAction(self.move_to_crosshair_action)
-        self.ui.scan2D_graph.sig_double_clicked.connect(self.move_to_crosshair)
-
-        # %% init and set the status bar
-        self.ui.statusbar = QtWidgets.QStatusBar(self.dockarea)
-        self.ui.statusbar.setMaximumHeight(25)
-        self.ui.StatusBarLayout.addWidget(self.ui.statusbar)
-        self.ui.status_message = QtWidgets.QLabel('Initializing')
-        self.ui.statusbar.addPermanentWidget(self.ui.status_message)
-        self.ui.N_scan_steps_sb = pymodaq.daq_utils.gui_utils.widgets.spinbox.QSpinBox_ro()
-        self.ui.N_scan_steps_sb.setToolTip('Total number of steps')
-        self.ui.indice_scan_sb = pymodaq.daq_utils.gui_utils.widgets.spinbox.QSpinBox_ro()
-        self.ui.indice_scan_sb.setToolTip('Current step value')
-        self.ui.indice_average_sb = pymodaq.daq_utils.gui_utils.widgets.spinbox.QSpinBox_ro()
-        self.ui.indice_average_sb.setToolTip('Current average value')
-        self.ui.scan_done_LED = QLED()
-        self.ui.scan_done_LED.setToolTip('Scan done state')
-        self.ui.statusbar.addPermanentWidget(self.ui.N_scan_steps_sb)
-        self.ui.statusbar.addPermanentWidget(self.ui.indice_scan_sb)
-        self.ui.statusbar.addPermanentWidget(self.ui.indice_average_sb)
-        self.ui.indice_average_sb.setVisible(False)
-        self.ui.statusbar.addPermanentWidget(self.ui.scan_done_LED)
-
-        self.plot_colors = utils.plot_colors
-        self.ui.splitter.setSizes([500, 1200])
-
-        self.ui.scan_done_LED.set_as_false()
-        self.ui.scan_done_LED.clickable = False
-
-        # displaying the settings
-        widget_settings = QtWidgets.QWidget()
-        settings_layout = QtWidgets.QGridLayout()
-        widget_settings.setLayout(settings_layout)
-        self.ui.settings_layout.addWidget(widget_settings)
-
-        self.settings_tree = ParameterTree()
-        self.settings_tree.setMinimumWidth(300)
-
-        settings_layout.addWidget(self.modules_manager.settings_tree, 0, 0, 1, 1)
-        self.ui.toolbox = QtWidgets.QToolBox()
-        settings_layout.addWidget(self.ui.toolbox, 0, 1, 1, 1)
-
-        self.ui.toolbox.addItem(self.settings_tree, 'General Settings')
-        self.ui.toolbox.addItem(self.h5saver.settings_tree, 'Save Settings')
-        self.ui.toolbox.addItem(self.scanner.settings_tree, 'Scanner Settings')
-        self.ui.toolbox.setCurrentIndex(2)
-
-        self.h5saver.settings_tree.setMinimumWidth(300)
-        self.settings = Parameter.create(name='Settings', type='group', children=self.params)
-
-        self.settings_tree.setParameters(self.settings, showTop=False)
-        self.settings.sigTreeStateChanged.connect(self.parameter_tree_changed)
-
-        # params about dataset attributes and scan attibutes
-        date = QDateTime(QDate.currentDate(), QTime.currentTime())
-        params_dataset = [{'title': 'Dataset information', 'name': 'dataset_info', 'type': 'group', 'children': [
-            {'title': 'Author:', 'name': 'author', 'type': 'str', 'value': config['user']['name']},
-            {'title': 'Date/time:', 'name': 'date_time', 'type': 'date_time', 'value': date},
-            {'title': 'Sample:', 'name': 'sample', 'type': 'str', 'value': ''},
-            {'title': 'Experiment type:', 'name': 'experiment_type', 'type': 'str', 'value': ''},
-            {'title': 'Description:', 'name': 'description', 'type': 'text', 'value': ''}]}]
-
-        params_scan = [{'title': 'Scan information', 'name': 'scan_info', 'type': 'group', 'children': [
-            {'title': 'Author:', 'name': 'author', 'type': 'str', 'value': config['user']['name']},
-            {'title': 'Date/time:', 'name': 'date_time', 'type': 'date_time', 'value': date},
-            {'title': 'Scan type:', 'name': 'scan_type', 'type': 'list', 'value': 'Scan1D',
-             'limits': ['Scan1D', 'Scan2D']},
-            {'title': 'Scan name:', 'name': 'scan_name', 'type': 'str', 'value': '', 'readonly': True},
-            {'title': 'Description:', 'name': 'description', 'type': 'text', 'value': ''},
-        ]}]
-
-        self.dataset_attributes = Parameter.create(name='Attributes', type='group', children=params_dataset)
-        self.scan_attributes = Parameter.create(name='Attributes', type='group', children=params_scan)
-
-        # creating the Average dock plots
-        self.create_average_dock()
-
-        # creating the menubar
-        self.create_menu()
-
-        #        connecting
-        self.ui.set_scan_pb.clicked.connect(self.set_scan)
-        self.ui.quit_pb.clicked.connect(self.quit_fun)
-
-        self.ui.start_scan_pb.clicked.connect(self.start_scan)
-        self.ui.start_batch_pb.clicked.connect(self.start_scan_batch)
-        self.ui.stop_scan_pb.clicked.connect(self.stop_scan)
-        self.ui.set_ini_positions_pb.clicked.connect(self.set_ini_positions)
-
-        self.ui.tabWidget.removeTab(2)
-
-    ###################
-    # external modules
-
-    def show_batcher(self, menubar):
-        self.batcher = BatchScanner(self.dockarea, self.modules_manager.actuators_name,
-                                    self.modules_manager.detectors_name)
-        self.batcher.create_menu(menubar)
-        self.batcher.setupUI()
-        self.ui.start_batch_pb.setVisible(True)
-
-    def start_scan_batch(self):
-        self.batch_started = True
-        self.ind_batch = 0
-        self.loop_scan_batch()
-
-    def loop_scan_batch(self):
-        if self.ind_batch >= len(self.batcher.scans_names):
-            self.stop_scan()
-            return
-        self.scanner = self.batcher.scans[self.batcher.scans_names[self.ind_batch]]
-        actuators, detectors = self.batcher.get_act_dets()
-        self.set_scan_batch(actuators[self.batcher.scans_names[self.ind_batch]],
-                            detectors[self.batcher.scans_names[self.ind_batch]])
-        self.start_scan()
-
-    def set_scan_batch(self, actuators, detectors):
-        self.modules_manager.selected_detectors_name = detectors
-        self.modules_manager.selected_actuators_name = actuators
-        QtWidgets.QApplication.processEvents()
-
-    def show_file_attributes(self, type_info='dataset'):
-        """
-            Switch the type_info value.
-
-            In case of :
-                * *scan* : Set parameters showing top false
-                * *dataset* : Set parameters showing top false
-                * *managers* : Set parameters showing top false. Add the save/cancel buttons to the accept/reject dialog (to save managers parameters in a xml file).
-
-            Finally, in case of accepted managers type info, save the managers parameters in a xml file.
-
-            =============== =========== ====================================
-            **Parameters**    **Type**    **Description**
-            *type_info*       string      The file type information between
-                                            * scan
-                                            * dataset
-                                            * managers
-            =============== =========== ====================================
-
-            See Also
-            --------
-            custom_tree.parameter_to_xml_file, create_menu
-        """
-        if self.show_popup:
-            dialog = QtWidgets.QDialog()
-            vlayout = QtWidgets.QVBoxLayout()
-            tree = ParameterTree()
-            tree.setMinimumWidth(400)
-            tree.setMinimumHeight(500)
-            if type_info == 'scan':
-                tree.setParameters(self.scan_attributes, showTop=False)
-            elif type_info == 'dataset':
-                tree.setParameters(self.dataset_attributes, showTop=False)
-
-            vlayout.addWidget(tree)
-            dialog.setLayout(vlayout)
-            buttonBox = QtWidgets.QDialogButtonBox(parent=dialog)
-            buttonBox.addButton('Cancel', buttonBox.RejectRole)
-            buttonBox.addButton('Apply', buttonBox.AcceptRole)
-            buttonBox.rejected.connect(dialog.reject)
-            buttonBox.accepted.connect(dialog.accept)
-
-            vlayout.addWidget(buttonBox)
-            dialog.setWindowTitle('Fill in information about this {}'.format(type_info))
-            res = dialog.exec()
-        else:
-            res = True
-        return res
-
-    def show_file_content(self):
-        try:
-            self.h5saver.init_file(addhoc_file_path=self.h5saver.settings.child(('current_h5_file')).value())
-            self.h5saver.show_file_content()
-        except Exception as e:
-            logger.exception(str(e))
-
-    def show_navigator(self):
-        if self.navigator is None:
-            # loading navigator
-
-            widgnav = QtWidgets.QWidget()
-            self.navigator = Navigator(widgnav)
-
-            self.navigator.log_signal[str].connect(self.dashboard.add_status)
-            self.navigator.settings.child('settings', 'Load h5').hide()
-            self.navigator.loadaction.setVisible(False)
-
-            self.ui.navigator_layout.addWidget(widgnav)
-            self.navigator.sig_double_clicked.connect(self.move_at)
-
-            self.scanner.scan_selector.remove_scan_selector()
-            items = OrderedDict(Navigator=dict(viewers=[self.navigator.viewer], names=["Navigator"]))
-            items.update(self.scanner.scan_selector.viewers_items)
-            self.scanner.viewers_items = items
-
-            self.ui.tabWidget.setCurrentIndex(self.ui.tabWidget.addTab(self.ui.tab_navigator, 'Navigator'))
-            self.set_scan()  # to load current scans into the navigator
-
-    ################
-    #  LOADING SAVING
-
-    def load_file(self):
-        self.h5saver.load_file(self.h5saver.h5_file_path)
-
-    def save_scan(self):
-        """
-        save live data and adds metadata to write that the scan is done
-        """
-        try:
-            scan_type = self.scanner.scan_parameters.scan_type
-            isadaptive = self.scanner.scan_parameters.scan_subtype == 'Adaptive'
-            self.ui.scan2D_graph.show_roi_target(False)
-
-            self.h5saver.current_scan_group.attrs['scan_done'] = True
-            self.h5saver.init_file(addhoc_file_path=self.h5saver.settings.child(('current_h5_file')).value())
-            # create Live scan node (may be empty if no possible live data could be plotted) but mandatory for
-            # incrementing scan index, otherwise current scan is overwritten
-            if scan_type == 'Scan1D' or \
-                    (scan_type == 'Sequential' and self.scanner.scan_parameters.Naxes == 1) or \
-                    (scan_type == 'Sequential' and self.scanner.scan_parameters.Naxes > 2) or \
-                    scan_type == 'Tabular':
-                live_group = self.h5saver.add_live_scan_group(self.h5saver.current_scan_group, '1D', title='',
-                                                              settings_as_xml='', metadata=dict([]))
-            else:  # scan_type == 'Scan2D' or\
-                #  (scan_type == 'Sequential' and self.scanner.scan_parameters.Naxes == 2):
-                live_group = self.h5saver.add_live_scan_group(self.h5saver.current_scan_group, '2D', title='',
-                                                              settings_as_xml='', metadata=dict([]))
-
-            # save scan1D
-            if len(self.scan_data_1D) != 0:
-
-                if self.settings.child('scan_options', 'scan_average').value() <= 1:
-                    datas = OrderedDict([])
-                    for ind in range(self.scan_data_1D.shape[1]):
-                        datas['Scan_Data_{:03d}'.format(ind)] = OrderedDict([])
-                        datas['Scan_Data_{:03d}'.format(ind)]['data'] = self.scan_data_1D[:, ind]
-                        if len(self.scan_data_1D[:, 0]) > 1:  # means data are 1D (so save corresponding axis)
-                            if scan_type == 'Scan1D' or \
-                                    (scan_type == 'Sequential' and self.scanner.scan_parameters.Naxes == 1):
-                                datas['Scan_Data_{:03d}'.format(ind)]['x_axis'] = utils.Axis(
-                                    data=self.scan_x_axis,
-                                    units=self.modules_manager.actuators[0].settings.child(
-                                        'move_settings', 'units').value(),
-                                    label=self.modules_manager.actuators[0].title)
-                            else:
-                                datas['Scan_Data_{:03d}'.format(ind)]['x_axis'] = utils.Axis(data=self.scan_x_axis,
-                                                                                             units='',
-                                                                                             label='Scan indexes')
-
-                    for ind_channel, channel in enumerate(datas):  # list of OrderedDict
-                        channel_group = self.h5saver.add_CH_group(live_group, title=channel)
-                        self.h5saver.add_data_live_scan(channel_group, datas['Scan_Data_{:03d}'.format(ind_channel)],
-                                                        scan_type='scan1D',
-                                                        scan_subtype=self.scanner.scan_parameters.scan_subtype)
-
-                else:
-                    averaged_datas = OrderedDict([])
-                    for ind in range(self.scan_data_1D.shape[1]):
-                        averaged_datas['Scan_Data_{:03d}'.format(ind)] = OrderedDict([])
-                        averaged_datas['Scan_Data_{:03d}'.format(ind)]['data'] = self.scan_data_1D_average[:, ind]
-                        if scan_type == 'Scan1D' or \
-                                (scan_type == 'Sequential' and self.scanner.scan_parameters.Naxes == 1):
-                            averaged_datas['Scan_Data_{:03d}'.format(ind)]['x_axis'] = utils.Axis(
-                                data=self.scan_x_axis,
-                                units=self.modules_manager.actuators[0].settings.child(
-                                    'move_settings', 'units').value(),
-                                label=self.modules_manager.actuators[0].title)
-                        else:
-                            averaged_datas['Scan_Data_{:03d}'.format(ind)]['x_axis'] = utils.Axis(
-                                data=self.scan_x_axis, units='', label='Scan indexes')
-
-                    for ind_channel, channel in enumerate(averaged_datas):  # list of OrderedDict
-                        channel_group = self.h5saver.add_CH_group(live_group, title=channel)
-                        self.h5saver.add_data_live_scan(channel_group,
-                                                        averaged_datas['Scan_Data_{:03d}'.format(ind_channel)],
-                                                        scan_type='scan1D',
-                                                        scan_subtype=self.scanner.scan_parameters.scan_subtype)
-
-                if self.settings.child('scan_options', 'scan_average').value() > 1:
-                    string = pymodaq.daq_utils.gui_utils.utils.widget_to_png_to_bytes(self.ui.average1D_graph.parent)
-                else:
-                    string = pymodaq.daq_utils.gui_utils.utils.widget_to_png_to_bytes(self.ui.scan1D_graph.parent)
-                live_group.attrs['pixmap1D'] = string
-
-            elif self.scan_data_2D != []:  #if live data is saved as 1D not needed to save as 2D
-
-                if len(self.modules_manager.actuators) == 1:
-                    scan_type = 'scan1D'
-                elif len(self.modules_manager.actuators) == 2:
-                    scan_type = 'scan2D'
-                if not isadaptive:
-                    if self.settings.child('scan_options', 'scan_average').value() <= 1:
-                        datas = OrderedDict([])
-                        for ind, data2D in enumerate(self.scan_data_2D):
-                            datas['Scan_Data_{:03d}'.format(ind)] = OrderedDict([])
-                            datas['Scan_Data_{:03d}'.format(ind)]['data'] = data2D.T
-                            datas['Scan_Data_{:03d}'.format(ind)]['x_axis'] = dict(
-                                data=self.ui.scan2D_graph.x_axis.axis_data(data2D.shape[1]),
-                                units=self.ui.scan2D_graph.x_axis.axis_units,
-                                label=self.ui.scan2D_graph.x_axis.axis_label)
-                            if scan_type == 'scan2D':
-                                datas['Scan_Data_{:03d}'.format(ind)]['y_axis'] = dict(
-                                    data=self.ui.scan2D_graph.y_axis.axis_data(data2D.shape[0]),
-                                    units=self.ui.scan2D_graph.y_axis.axis_units,
-                                    label=self.ui.scan2D_graph.y_axis.axis_label)
-
-                        for ind_channel, channel in enumerate(datas):  # list of OrderedDict
-                            channel_group = self.h5saver.add_CH_group(live_group, title=channel)
-                            self.h5saver.add_data_live_scan(channel_group,
-                                                            datas['Scan_Data_{:03d}'.format(ind_channel)],
-                                                            scan_type=scan_type,
-                                                            scan_subtype=self.scanner.scan_parameters.scan_subtype)
-
-                    else:
-                        averaged_datas = OrderedDict([])
-                        for ind, data2D in enumerate(self.scan_data_2D_average):
-                            averaged_datas['Scan_Data_{:03d}'.format(ind)] = OrderedDict([])
-                            averaged_datas['Scan_Data_{:03d}'.format(ind)]['data'] = data2D.T
-                            averaged_datas['Scan_Data_{:03d}'.format(ind)]['x_axis'] = dict(
-                                data=self.ui.scan2D_graph.x_axis.axis_data(data2D.shape[1]),
-                                units=self.ui.scan2D_graph.x_axis.axis_units,
-                                label=self.ui.scan2D_graph.x_axis.axis_label)
-                            if scan_type == 'scan2D':
-                                averaged_datas['Scan_Data_{:03d}'.format(ind)]['y_axis'] = dict(
-                                    data=self.ui.scan2D_graph.y_axis.axis_data(data2D.shape[0]),
-                                    units=self.ui.scan2D_graph.y_axis.axis_units,
-                                    label=self.ui.scan2D_graph.y_axis.axis_label)
-
-                        for ind_channel, channel in enumerate(averaged_datas):  # dict of OrderedDict
-                            channel_group = self.h5saver.add_CH_group(live_group, title=channel)
-                            self.h5saver.add_data_live_scan(channel_group, averaged_datas[
-                                'Scan_Data_{:03d}'.format(ind_channel)],
-                                scan_type=scan_type, scan_subtype=self.scanner.scan_parameters.scan_subtype)
-
-                else:
-                    channel_group = self.h5saver.add_CH_group(live_group, title='Scan_Data_000')
-                    self.h5saver.add_data_live_scan(channel_group, dict(data=self.scan_data_2D[:, 2],
-                                                                        x_axis=self.scan_data_2D[:, 0],
-                                                                        y_axis=self.scan_data_2D[:, 1]),
-                                                    scan_type=scan_type,
-                                                    scan_subtype=self.scanner.scan_parameters.scan_subtype)
-
-                if self.settings.child('scan_options', 'scan_average').value() > 1:
-                    string = pymodaq.daq_utils.gui_utils.utils.widget_to_png_to_bytes(self.ui.average2D_graph.parent)
-                else:
-                    string = pymodaq.daq_utils.gui_utils.utils.widget_to_png_to_bytes(self.ui.scan2D_graph.parent)
-                live_group.attrs['pixmap2D'] = string
-
-            if self.navigator is not None:
-                self.navigator.update_2Dscans()
-
-        except Exception as e:
-            logger.exception(str(e))
-
-    def save_file(self):
-        if not os.path.isdir(self.h5saver.settings.child(('base_path')).value()):
-            os.mkdir(self.h5saver.settings.child(('base_path')).value())
-        filename = pymodaq.daq_utils.gui_utils.file_io.select_file(self.h5saver.settings.child(('base_path')).value(), save=True, ext='h5')
-        self.h5saver.h5_file.copy_file(str(filename))
-
-    def save_metadata(self, node, type_info='dataset_info'):
-        """
-            Switch the type_info value with :
-                * *'dataset_info'* : Give the params attributes the dataset_attributes values
-                * *'dataset'* : Give the params attributes the scan_attributes values
-
-            |
-            | Once done, course the params and add string casted date/time metadata as an element of attributes array.
-            | Save the contents of given parameter object into a xml string unde the attributes settings.
-
-            =============== =================== =========================================
-            **Parameters**    **Type**           **Description**
-            *node*            pytables h5 node   Root node to be treated
-            *type_info*       string             File type info between :
-                                                    * 'dataset_info'
-                                                    * 'scan_info'
-            =============== =================== =========================================
-
-            See Also
-            --------
-            custom_tree.parameter_to_xml_string
-        """
-
-        attr = node.attrs
-        if type_info == 'dataset_info':
-            attr['type'] = 'dataset'
-            params = self.dataset_attributes
-        else:
-            attr['type'] = 'scan'
-            params = self.scan_attributes
-        for child in params.child((type_info)).children():
-            if type(child.value()) is QDateTime:
-                attr[child.name()] = child.value().toString('dd/mm/yyyy HH:MM:ss')
-            else:
-                attr[child.name()] = child.value()
-        if type_info == 'dataset_info':
-            # save contents of given parameter object into an xml string under the attribute settings
-            settings_str = b'<All_settings title="All Settings" type="group">' + \
-                           pymodaq.daq_utils.parameter.ioxml.parameter_to_xml_string(params) + \
-                           pymodaq.daq_utils.parameter.ioxml.parameter_to_xml_string(self.settings)
-                           # pymodaq.daq_utils.parameter.ioxml.parameter_to_xml_string(
-                           #     self.dashboard.preset_manager.preset_params) +\
-            settings_str += b'</All_settings>'
-            attr['settings'] = settings_str
-
-        elif type_info == 'scan_info':
-            settings_all = [pymodaq.daq_utils.parameter.ioxml.parameter_to_xml_string(params),
-                           pymodaq.daq_utils.parameter.ioxml.parameter_to_xml_string(self.settings),
-                           pymodaq.daq_utils.parameter.ioxml.parameter_to_xml_string(self.h5saver.settings),
-                           pymodaq.daq_utils.parameter.ioxml.parameter_to_xml_string(self.scanner.settings)]
-
-            settings_str = b'<All_settings title="All Settings" type="group">'
-            for set in settings_all:
-                if len(settings_str + set) < 60000:
-                    # size limit for any object header (including all the other attributes) is 64kb
-                    settings_str += set
-                else:
-                    break
-            settings_str += b'</All_settings>'
-            attr['settings'] = settings_str
-
-    def create_new_file(self, new_file):
-        self.h5saver.init_file(update_h5=new_file)
-        res = self.update_file_settings(new_file)
-        self.h5saver.current_scan_group.attrs['scan_done'] = False
-        if new_file:
-            self.ui.start_scan_pb.setEnabled(False)
-            self.ui.stop_scan_pb.setEnabled(False)
-        return res
-
-    def update_file_settings(self, new_file=False):
-        try:
-            if self.h5saver.current_scan_group is None:
-                new_file = True
-
-            if new_file:
-                self.set_metadata_about_dataset()
-                self.save_metadata(self.h5saver.raw_group, 'dataset_info')
-
-            if self.h5saver.current_scan_name is None:
-                self.h5saver.add_scan_group()
-            elif not self.h5saver.is_node_in_group(self.h5saver.raw_group, self.h5saver.current_scan_name):
-                self.h5saver.add_scan_group()
-
-            if self.navigator is not None:
-                self.navigator.update_h5file(self.h5saver.h5_file)
-                self.navigator.settings.child('settings', 'filepath').setValue(self.h5saver.h5_file.filename)
-
-            # set attributes to the current group, such as scan_type....
-            self.scan_attributes.child('scan_info', 'scan_type').setValue(
-                self.scanner.settings.child('scan_type').value())
-            self.scan_attributes.child('scan_info', 'scan_name').setValue(self.h5saver.current_scan_group.name)
-            self.scan_attributes.child('scan_info', 'description').setValue(
-                self.h5saver.current_scan_group.attrs['description'])
-            res = self.set_metadata_about_current_scan()
-            self.save_metadata(self.h5saver.current_scan_group, 'scan_info')
-            return res
-
-        except Exception as e:
-            logger.exception(str(e))
-
-    #  PROCESS MODIFICATIONS
-
-    @Slot(list)
-    def update_actuators(self, actuators):
-        self.scanner.actuators = actuators
-
-    def move_to_crosshair(self, posx=None, posy=None):
-        """
-            Compute the scaled position from the given x/y position and send the command_DAQ signal with computed values as attributes.
-
-
-            =============== =========== ==============================
-            **Parameters**    **Type**   **Description**
-            *posx*           float       the original x position
-            *posy*           float       the original y position
-            =============== =========== ==============================
-
-            See Also
-            --------
-            update_status
-        """
-        try:
-            if self.ui.move_to_crosshair_cb.isChecked():
-                if "2D" in self.scanner.settings.child('scan_type').value():
-                    if len(self.modules_manager.actuators) == 2 and posx is not None and posy is not None:
-                        posx_real = posx * self.ui.scan2D_graph.x_axis.axis_scaling +\
-                                    self.ui.scan2D_graph.x_axis.axis_offset
-                        posy_real = posy * self.ui.scan2D_graph.y_axis.axis_scaling +\
-                                    self.ui.scan2D_graph.y_axis.axis_offset
-                        self.move_at(posx_real, posy_real)
-                    else:
-                        self.update_status("not valid configuration, check number of stages and scan2D option",
-                                           log_type='log')
-        except Exception as e:
-            logger.exception(str(e))
-            # self.update_status(getLineInfo()+ str(e),log_type='log')
-
-    def move_at(self, posx_real, posy_real):
-        self.command_DAQ_signal.emit(["move_stages", [posx_real, posy_real]])
-
-    def parameter_tree_changed(self, param, changes):
-        """
-            Check for changes in the given (parameter,change,information) tuple list.
-            In case of value changed, update the DAQscan_settings tree consequently.
-
-            =============== ============================================ ==============================
-            **Parameters**    **Type**                                     **Description**
-            *param*           instance of pyqtgraph parameter              the parameter to be checked
-            *changes*         (parameter,change,information) tuple list    the current changes state
-            =============== ============================================ ==============================
-        """
-        for param, change, data in changes:
-            path = self.settings.childPath(param)
-            if path is not None:
-                childName = '.'.join(path)
-            else:
-                childName = param.name()
-            if change == 'childAdded':
-                pass
-
-            elif change == 'value':
-                if param.name() == 'scan_average':
-                    self.show_average_dock(param.value() > 1)
-
-            elif change == 'parent':
-                pass
-
-    def update_plot_det_items(self, dets):
-        """
-        """
-        self.settings.child('scan_options', 'plot_from').setOpts(limits=dets)
-
-    def update_status(self, txt, wait_time=0, log_type=None):
-        """
-            Show the txt message in the status bar with a delay of wait_time ms.
-
-            =============== =========== =======================
-            **Parameters**    **Type**    **Description**
-            *txt*             string      The message to show
-            *wait_time*       int         the delay of showing
-            *log_type*        string      the type of the log
-            =============== =========== =======================
-        """
-        self.ui.statusbar.showMessage(txt, wait_time)
-        self.status_signal.emit(txt)
-        logger.info(txt)
-
-    @Slot(list)
-    def thread_status(self, status):  # general function to get datas/infos from all threads back to the main
-        """
-            | General function to get datas/infos from all threads back to the main.
-            |
-
-            Switch the status with :
-                * *"Update status"* : Update the status bar with the status attribute txt message
-                * *"Update_scan_index"* : Set the value of the User Interface - indice_scan_sb attribute.
-                * *"Scan_done"* : Save the scan and init the positions
-                * *"Timeout"* : Set the "Timeout occured" in the User Interface-log message
-
-            See Also
-            --------
-            update_status, save_scan, set_ini_positions
-        """
-        if status[0] == "Update_Status":
-            self.update_status(status[1], wait_time=self.wait_time)
-
-        elif status[0] == "Update_scan_index":
-            # status[1] = [ind_scan,ind_average]
-            self.ind_scan = status[1][0]
-            self.ui.indice_scan_sb.setValue(status[1][0])
-            self.ind_average = status[1][1]
-            self.ui.indice_average_sb.setValue(status[1][1])
-
-        elif status[0] == "Scan_done":
-            self.ui.scan_done_LED.set_as_true()
-            self.save_scan()
-            if not self.batch_started:
-                if not self.dashboard.overshoot:
-                    self.set_ini_positions()
-                self.ui.set_scan_pb.setEnabled(True)
-                self.ui.set_ini_positions_pb.setEnabled(True)
-                self.ui.start_scan_pb.setEnabled(True)
-
-                # reactivate module controls usiong remote_control
-                if hasattr(self.dashboard, 'remote_manager'):
-                    remote_manager = getattr(self.dashboard, 'remote_manager')
-                    remote_manager.activate_all(True)
-            else:
-                self.ind_batch += 1
-                self.loop_scan_batch()
-
-        elif status[0] == "Timeout":
-            self.ui.status_message.setText('Timeout occurred')
-
-    ############
-    #  PLOTTING
-
-    def show_average_dock(self, show=True):
-        self.ui.average_dock.setVisible(show)
-        self.ui.indice_average_sb.setVisible(show)
-        if show:
-            self.ui.average_dock.setStretch(100, 100)
-
-    @Slot(OrderedDict)
-    def update_scan_GUI(self, datas):
-        """
-            Update the graph in the Graphic Interface from the given datas switching 0D/1D/2D consequently.
-
-            =============== =============================== ===========================
-            **Parameters**    **Type**                       **Description**
-            *datas*           double precision float array   the data values to update
-            =============== =============================== ===========================
-
-            See Also
-            --------
-            update_2D_graph, update_1D_graph, update_status
-        """
-
-        self.scan_positions.append(self.modules_manager.order_positions(datas['positions']))
-        scan_type = utils.capitalize(self.scanner.scan_parameters.scan_type)
-
-        display_as_sequence = (scan_type == 'Sequential' and self.scanner.scan_parameters.Naxes > 2) or \
-                              (scan_type == 'Tabular' and not self.scanner.scan_parameters.Naxes == 1)
-
-        tabular2D = scan_type == 'Tabular' and self.scanner.scan_parameters.Naxes == 2
-        isadaptive = self.scanner.scan_parameters.scan_subtype == 'Adaptive'
-        if 'curvilinear' in datas:
-            self.curvilinear_values.append(datas['curvilinear'])
-
-        if self.bkg_container is None:
-            det_name = self.settings.child('scan_options', 'plot_from').value()
-            det_mod = self.modules_manager.get_mod_from_name(det_name)
-            if det_mod.bkg is not None and det_mod.is_bkg:
-                self.bkg_container = OrderedDict([])
-                det_mod.process_data(det_mod.bkg, self.bkg_container)
-
-        try:
-            if scan_type == 'Scan1D' or \
-                    (scan_type == 'Sequential' and self.scanner.scan_parameters.Naxes == 1) or \
-                    (scan_type == 'Sequential' and self.scanner.scan_parameters.Naxes > 2) or \
-                    (scan_type == 'Tabular' and self.scanner.scan_parameters.Naxes == 1) or \
-                    (scan_type == 'Tabular' and self.scanner.scan_parameters.Naxes > 2):
-
-                if 'data0D' in datas['datas'].keys():
-                    if not (datas['datas']['data0D'] is None or datas['datas']['data0D'] == OrderedDict()):
-                        if self.bkg_container is None:
-                            bkg = None
-                        else:
-                            bkg = self.bkg_container['data0D']
-                        self.update_1D_graph(datas['datas']['data0D'], display_as_sequence=display_as_sequence,
-                                             isadaptive=isadaptive, bkg=bkg)
-                    else:
-                        self.scan_data_1D = []
-                if 'data1D' in datas['datas'].keys():
-                    if not (datas['datas']['data1D'] is None or datas['datas']['data1D'] == OrderedDict()):
-                        if self.bkg_container is None:
-                            bkg = None
-                        else:
-                            bkg = self.bkg_container['data1D']
-                        self.update_2D_graph(datas['datas']['data1D'], display_as_sequence=display_as_sequence,
-                                             isadaptive=isadaptive, bkg=bkg)
-                    # else:
-                    #     self.scan_data_2D = []
-
-            if scan_type == 'Scan2D' or \
-                    (scan_type == 'Sequential' and self.scanner.scan_parameters.Naxes == 2) or \
-                    tabular2D:
-                # means 2D cartography type scan
-
-                if 'data0D' in datas['datas'].keys():
-                    if not (datas['datas']['data0D'] is None or datas['datas']['data0D'] == OrderedDict()):
-                        if self.bkg_container is None:
-                            bkg = None
-                        else:
-                            bkg = self.bkg_container['data0D']
-                        self.update_2D_graph(datas['datas']['data0D'], display_as_sequence=display_as_sequence,
-                                             isadaptive=isadaptive or tabular2D, bkg=bkg)
-                    else:
-                        self.scan_data_2D = []
-
-        except Exception as e:
-            logger.exception(str(e))
-
-    def update_1D_graph(self, datas, display_as_sequence=False, isadaptive=False, bkg=None):
-        """
-            Update the 1D graphic window in the Graphic Interface with the given datas.
-
-            Depending of scan type :
-                * *'Linear back to start'* scan :
-                    * Calibrate axis positions between graph and scan
-                    * Update scan datas from the given datas values
-                    * Set data on item attribute
-                * *'linear'* or else scan :
-                    * Calibrate axis positions between graph and scan
-                    * Update scan datas from the given datas values
-
-            =============== ============================== =====================================
-            **Parameters**    **Type**                      **Description**
-            *datas*          Double precision float array   The datas to be showed in the graph
-            =============== ============================== =====================================
-
-            See Also
-            --------
-            update_status
-        """
-        try:
-            scan_type = self.scanner.scan_parameters.scan_type
-            # self.scan_y_axis = np.array([])
-            if not self.plot_1D_ini:  # init the datas
-                self.plot_1D_ini = True
-                self.ui.scan1D_subgraph.show(display_as_sequence)
-                if isadaptive:
-                    self.scan_data_1D = np.expand_dims(np.array([datas[key]['data'] for key in datas]), 0)
-                else:
-                    if not display_as_sequence:
-                        if self.scanner.scan_parameters.scan_subtype == 'Linear back to start':
-                            self.scan_x_axis = np.array(self.scanner.scan_parameters.positions[0::2, 0])
-                        else:
-                            self.scan_x_axis = np.array(self.scanner.scan_parameters.positions[:, 0])
-
-                    else:
-                        self.scan_x_axis = np.linspace(0, len(self.scanner.scan_parameters.positions) - 1,
-                                                       len(self.scanner.scan_parameters.positions))
-                        self.ui.scan1D_subgraph.show_data(
-                            [positions for positions in self.scanner.scan_parameters.positions.T])
-                        self.ui.scan1D_subgraph.update_labels(self.scanner.actuators)
-                        self.ui.scan1D_subgraph.set_axis_label(axis_settings=dict(orientation='bottom',
-                                                                                  label='Scan index', units=''))
-
-                    self.scan_data_1D = np.zeros((self.scanner.scan_parameters.Nsteps, len(datas))) * np.nan
-                    if self.settings.child('scan_options', 'scan_average').value() > 1:
-                        self.scan_data_1D_average = np.zeros((self.scanner.scan_parameters.Nsteps, len(datas)))
-
-                self.ui.scan1D_graph.set_axis_label(axis_settings=dict(orientation='left',
-                                                                       label=self.settings.child('scan_options',
-                                                                                                 'plot_from').value(),
-                                                                       units=''))
-
-            if display_as_sequence:
-                self.ui.scan1D_subgraph.show_data(
-                    [positions for positions in np.array(self.scan_positions).T])
-                self.ui.scan1D_subgraph.update_labels(self.scanner.actuators)
-                self.ui.scan1D_subgraph.set_axis_label(axis_settings=dict(orientation='bottom',
-                                                                          label='Scan index', units=''))
-
-            # to test random mode:
-            # self.scan_data_1D[self.ind_scan, :] =np.random.rand((1))* np.array([np.exp(-(self.scan_x_axis[self.ind_scan]-50)**2/20**2),np.exp(-(self.scan_x_axis[self.ind_scan]-50)**6/10**6)]) # np.array(list(datas.values()))
-            # self.scan_data_1D[self.ind_scan, :] =  np.array(list(datas.values()))
-
-            if isadaptive:
-                if self.ind_scan != 0:
-
-                    self.scan_data_1D = np.vstack((self.scan_data_1D, np.array([
-                        self.get_data_live_bkg(datas, key, bkg) for key in datas])))
-
-                if not display_as_sequence:
-                    self.scan_x_axis = np.array(self.scan_positions)
-                else:
-                    if isadaptive:
-                        self.scan_x_axis = np.array(self.curvilinear_values)
-                    else:
-                        self.scan_x_axis = np.linspace(0, len(self.scan_positions) - 1,
-                                                       len(self.scan_positions))
-            else:
-                if self.scanner.scan_parameters.scan_subtype == 'Linear back to start':
-                    if not utils.odd_even(self.ind_scan):
-
-                        self.scan_data_1D[int(self.ind_scan / 2), :] = \
-                            np.array([self.get_data_live_bkg(datas, key, bkg) for key in datas])
-
-                        if self.settings.child('scan_options', 'scan_average').value() > 1:
-                            self.scan_data_1D_average[self.ind_scan, :] = \
-                                (self.ind_average * self.scan_data_1D_average[
-                                    int(self.ind_scan / 2), :] + self.scan_data_1D[
-                                    int(self.ind_scan / 2), :]) / (self.ind_average + 1)
-
-                else:
-                    self.scan_data_1D[self.ind_scan, :] = \
-                        np.squeeze(np.array([self.get_data_live_bkg(datas, key, bkg) for key in datas]))
-
-                    if self.settings.child('scan_options', 'scan_average').value() > 1:
-                        self.scan_data_1D_average[self.ind_scan, :] = \
-                            (self.ind_average * self.scan_data_1D_average[self.ind_scan, :] + self.scan_data_1D[
-                                self.ind_scan, :]) / (self.ind_average + 1)
-
-            data_to_plot = list(self.scan_data_1D.T)
-            if self.settings.child('scan_options', 'sort_scan1D').value():
-                x_axis_to_plot, indices = np.unique(self.scan_x_axis, return_index=True)
-                data_to_plot = [data[indices] for data in data_to_plot]
-            else:
-                x_axis_to_plot = np.squeeze(self.scan_x_axis)
-
-            if not display_as_sequence:
-                x_axis = utils.Axis(data=x_axis_to_plot,
-                                    label=self.modules_manager.actuators[0].title,
-                                    units=self.modules_manager.actuators[0].settings.child('move_settings',
-                                                                                           'units').value())
-            else:
-                if isadaptive:
-                    x_axis = utils.Axis(data=x_axis_to_plot, label='Curvilinear value', units='')
-                else:
-                    x_axis = utils.Axis(data=x_axis_to_plot, label='Scan index', units='')
-
-            #self.ui.scan1D_graph.x_axis = x_axis
-            self.ui.scan1D_graph.show_data(data_to_plot, x_axis=x_axis)
-            self.live_data_1D_signal.emit([x_axis, data_to_plot])
-
-            if self.settings.child('scan_options', 'scan_average').value() > 1:
-                data_averaged_sorted = list(self.scan_data_1D_average.T)
-                if self.settings.child('scan_options', 'sort_scan1D').value():
-                    data_averaged_sorted = [data[indices] for data in data_averaged_sorted]
-                self.ui.average1D_graph.show_data(data_averaged_sorted, x_axis=x_axis)
-
-        except Exception as e:
-            logger.exception(str(e))
-
-    def get_data_live_bkg(self, datas, key, bkg):
-        bkg_flag = False
-        if bkg is not None:
-            if key in bkg:
-                bkg_flag = True
-        if bkg_flag:
-            data = datas[key]['data'] - bkg[key]['data']
-        else:
-            data = datas[key]['data']
-        return data
-
-    def update_2D_graph(self, datas, display_as_sequence=False, isadaptive=False, bkg=None):
-        """
-            Update the 2D graphic window in the Graphic Interface with the given datas (if not none).
-
-            Depending on scan type :
-                * *2D scan* :
-                    * Calibrate the axis positions between graphic and scan
-                    * Update scan datas with the given datas values.
-                    * Set an image with the updated scan data
-                * *1D scan* :
-                    * Calibrate the axis positions between graphic and scan
-                    * Update scan datas with the given datas values.
-                    * Concatenate 1D vectors to make a 2D image
-                    * Set an image with the updated scan data
-
-            =============== =============================== ===========================
-            **Parameters**    **Type**                       **Description**
-            *datas*           double precision float array   the data values to update
-            =============== =============================== ===========================
-
-            See Also
-            --------
-            update_status
-        """
-        try:
-            scan_type = self.scanner.scan_parameters.scan_type
-            if scan_type == 'Scan2D' or \
-                    (scan_type == 'Sequential' and self.scanner.scan_parameters.Naxes == 2) or \
-                    (scan_type == 'Tabular' and self.scanner.scan_parameters.Naxes == 2):
-
-                if not self.plot_2D_ini:  # init the data
-                    # self.ui.scan1D_subgraph.show(False)
-                    self.plot_2D_ini = True
-                    self.ui.scan2D_graph.show_roi_target(not isadaptive)
-                    if isadaptive:
-                        self.scan_x_axis2D = np.array(self.scan_positions)[:, 0]
-                        self.scan_y_axis = np.array(self.scan_positions)[:, 1]
-                        key = list(datas.keys())[0]
-                        if bkg is not None:
-                            self.scan_data_2D = \
-                                np.hstack((self.scan_positions[-1], datas[key]['data'] - bkg[key]['data']))
-                        else:
-                            self.scan_data_2D = \
-                                np.hstack((self.scan_positions[-1], datas[key]['data']))
-                    else:
-
-                        self.scan_x_axis2D = self.scanner.scan_parameters.axes_unique[0]
-                        self.scan_y_axis = self.scanner.scan_parameters.axes_unique[1]
-                        self.scan_data_2D = [np.zeros((len(self.scan_y_axis),
-                                                       len(self.scan_x_axis2D)))
-                                             for ind in range(min((3, len(datas))))]
-                    self.ui.scan2D_graph.x_axis = utils.Axis(data=self.scan_x_axis2D,
-                                                       units=self.modules_manager.actuators[0].settings.child(
-                                                           'move_settings', 'units').value(),
-                                                       label=self.modules_manager.actuators[0].title)
-                    self.ui.scan2D_graph.y_axis = utils.Axis(data=self.scan_y_axis,
-                                                       units=self.modules_manager.actuators[1].settings.child(
-                                                           'move_settings', 'units').value(),
-
-                                                       label=self.modules_manager.actuators[1].title)
-                    size = (self.scanner.scan_parameters.steps[0] / self.ui.scan2D_graph.x_axis.axis_scaling,
-                            self.scanner.scan_parameters.steps[1] / self.ui.scan2D_graph.y_axis.axis_scaling)
-                    self.ui.scan2D_graph.move_scale_roi_target(size=size)
-
-                    if self.settings.child('scan_options', 'scan_average').value() > 1:
-                        self.ui.average2D_graph.x_axis = utils.Axis(data=self.scan_x_axis2D,
-                                                              units=self.modules_manager.actuators[0].settings.child(
-                                                                  'move_settings', 'units').value(),
-                                                              label=self.modules_manager.actuators[0].title)
-                        self.ui.average2D_graph.y_axis = utils.Axis(data=self.scan_y_axis,
-                                                              units=self.modules_manager.actuators[1].settings.child(
-                                                                  'move_settings', 'units').value(),
-                                                              label=self.modules_manager.actuators[1].title)
-                        self.scan_data_2D_average = [np.zeros((len(self.scanner.scan_parameters.axis_2D_2),
-                                                               len(self.scanner.scan_parameters.axis_2D_1)))
-                                                     for ind in range(min((3, len(datas))))]
-
-                if not isadaptive:
-                    ind_pos_axis_1 = self.scanner.scan_parameters.axes_indexes[self.ind_scan, 0]
-                    ind_pos_axis_2 = self.scanner.scan_parameters.axes_indexes[self.ind_scan, 1]
-                    self.ui.scan2D_graph.move_scale_roi_target(pos=(ind_pos_axis_1, ind_pos_axis_2))
-                    for ind_plot in range(min((3, len(datas)))):
-                        keys = list(datas.keys())
-
-                        self.scan_data_2D[ind_plot][ind_pos_axis_2, ind_pos_axis_1] = \
-                            self.get_data_live_bkg(datas, keys[ind_plot], bkg)
-
-                        if self.settings.child('scan_options', 'scan_average').value() > 1:
-                            self.scan_data_2D_average[ind_plot][ind_pos_axis_2, ind_pos_axis_1] = \
-                                (self.ind_average * self.scan_data_2D_average[ind_plot][
-                                    ind_pos_axis_2, ind_pos_axis_1] + datas[
-                                    keys[ind_plot]]['data']) / (self.ind_average + 1)
-                    self.ui.scan2D_graph.show_data(utils.DataFromPlugins(dim='Data2D', data=self.scan_data_2D))
-
-                    if self.settings.child('scan_options', 'scan_average').value() > 1:
-                        self.ui.average2D_graph.setImage(*self.scan_data_2D_average)
-
-                else:
-                    if self.ind_scan != 0:
-                        key = list(datas.keys())[0]
-
-                        self.scan_data_2D = np.vstack((self.scan_data_2D,
-                                                       np.hstack((self.scan_positions[-1],
-                                                                  self.get_data_live_bkg(datas, key, bkg)))))
-
-                    if len(self.scan_data_2D) > 3:  # at least 3 point to make a triangulation image
-                        self.ui.scan2D_graph.setImage(data_spread=self.scan_data_2D)
-
-            else:  # scan 1D with concatenation of vectors making a 2D image
-                if not self.plot_2D_ini:  # init the data
-                    self.plot_2D_ini = True
-                    if display_as_sequence:
-                        self.ui.scan2D_subgraph.show(True)
-                        self.ui.scan2D_subgraph.show_data(
-                            [positions for positions in self.scanner.scan_parameters.positions.T])
-                        self.ui.scan2D_subgraph.update_labels(self.scanner.actuators)
-
-                    data = datas[list(datas.keys())[0]]
-                    Ny = len(data[list(data.keys())[0]])
-
-                    self.scan_y_axis = np.array([])
-
-                    Nx = len(self.scanner.scan_parameters.positions)
-                    if not display_as_sequence:
-
-                        if self.scanner.scan_parameters.scan_subtype == 'Linear back to start':
-                            self.scan_x_axis2D = np.array(self.scanner.scan_parameters.positions[0::2, 0])
-                        else:
-                            self.scan_x_axis2D = np.array(self.scanner.scan_parameters.positions[:, 0])
-
-                        x_axis = utils.Axis(data=self.scan_x_axis2D,
-                                            label=self.modules_manager.actuators[0].title,
-                                            units=self.modules_manager.actuators[0].settings.child('move_settings',
-                                                                                                   'units').value())
-
-                    else:
-                        x_axis = utils.Axis(data=self.scan_x_axis2D,
-                                            label='Scan index',
-                                            units='')
-                        self.scan_x_axis2D = np.linspace(0, Nx - 1, Nx)
-
-                    self.ui.scan2D_graph.x_axis = x_axis
-                    self.ui.scan2D_subgraph.x_axis = x_axis
-
-                    det_names = [det.title for det in self.modules_manager.detectors_all]
-                    ind_plot_det = det_names.index(self.settings.child('scan_options', 'plot_from').value())
-                    if 'x_axis' in data.keys():
-                        self.scan_y_axis = data['x_axis']['data']
-                        label = data['x_axis']['label']
-                        units = data['x_axis']['units']
-                    else:
-                        self.scan_y_axis = np.linspace(0, Ny - 1, Ny)
-                        label = 'pixels'
-                        units = 'index'
-
-                    if self.modules_manager.detectors_all[ind_plot_det].ui.viewers[0].viewer_type == 'Data1D':
-                        if label == '':
-                            label = self.modules_manager.detectors_all[ind_plot_det].ui.viewers[0].axis_settings['label']
-                        if units == '':
-                            units = self.modules_manager.detectors_all[ind_plot_det].ui.viewers[0].axis_settings['units']
-
-                    self.ui.scan2D_graph.y_axis =\
-                        utils.Axis(data=self.scan_y_axis,
-                                   units=units,
-                                   label=f'{self.modules_manager.detectors_all[ind_plot_det].title} {label}')
-                    self.scan_data_2D = []
-                    self.scan_data_2D_average = []
-                    for ind, key in enumerate(datas):
-                        if ind >= 3:
-                            break
-                        self.scan_data_2D.append(np.zeros([datas[key]['data'].shape[0]] + [Nx]))
-                        if self.settings.child('scan_options', 'scan_average').value() > 1:
-                            self.scan_data_2D_average.append(np.zeros([datas[key]['data'].shape[0]] + [Nx]))
-
-                if self.scanner.scan_parameters.scan_subtype == 'Linear back to start':
-                    if not utils.odd_even(self.ind_scan):
-                        for ind_plot, key in enumerate(datas.keys()):
-
-                            self.scan_data_2D[ind_plot][:, int(self.ind_scan / 2)] = \
-                                self.get_data_live_bkg(datas, key, bkg)
-
-                            if self.settings.child('scan_options', 'scan_average').value() > 1:
-                                self.scan_data_2D_average[ind_plot][:, int(self.ind_scan / 2)] = \
-                                    (self.ind_average * self.scan_data_2D_average[ind_plot][
-                                        :, int(self.ind_scan / 2)] + datas[key]['data']) / (self.ind_average + 1)
-
-                else:
-                    if not display_as_sequence:
-                        ind_pos_axis = self.scanner.scan_parameters.axes_indexes[self.ind_scan, 0]
-                    else:
-                        ind_pos_axis = self.ind_scan
-
-                    for ind_plot, key in enumerate(datas.keys()):
-                        if ind_plot >= 3:
-                            break
-                        self.scan_data_2D[ind_plot][:, ind_pos_axis] = self.get_data_live_bkg(datas, key, bkg)
-
-                        if self.settings.child('scan_options', 'scan_average').value() > 1:
-                            self.scan_data_2D_average[ind_plot][:, self.ind_scan] = \
-                                (self.ind_average * self.scan_data_2D_average[ind_plot][:, ind_pos_axis] + datas[key][
-                                    'data']) \
-                                / (self.ind_average + 1)
-
-                self.ui.scan2D_graph.setImage(*self.scan_data_2D)
-                if self.settings.child('scan_options', 'scan_average').value() > 1:
-                    self.ui.average2D_graph.setImage(*self.scan_data_2D_average)
-
-        except Exception as e:
-            logger.exception(str(e))
-
-    #################
-    #  SCAN FLOW
-
-    def set_scan(self, scan=None):
-        """
-        Sets the current scan given the selected settings. Makes some checks, increments the h5 file scans.
-        In case the dialog is cancelled, return False and aborts the scan
-        """
-        try:
-            # set the filename and path
-            res = self.create_new_file(False)
-            if not res:
-                return
-
-            # reinit these objects
-            self.scan_data_1D = []
-            self.scan_data_1D_average = []
-            self.scan_data_2D = []
-            self.scan_data_2D_average = []
-
-            scan_params = self.scanner.set_scan()
-            if scan_params.scan_info.positions is None:
-                messagebox(text=f"An error occurred when establishing the scan steps. Actual settings "
-                                f"gives approximately {int(scan_params.Nsteps)} steps."
-                                f" Please check the steps number "
-                                f"limit in the config file ({config['scan']['steps_limit']}) or modify"
-                                f" your scan settings.")
-
-            if len(self.modules_manager.actuators) != self.scanner.scan_parameters.Naxes:
-                messagebox(text="There are not enough or too much selected move modules for this scan")
-                return
-
-            if self.scanner.scan_parameters.scan_subtype == 'Adaptive':
-                if len(self.modules_manager.get_selected_probed_data('0D')) == 0:
-                    messagebox(text="In adaptive mode, you have to pick a 0D signal from which the algorithm will"
-                                    " determine the next positions to scan, see 'probe_data' in the modules selector"
-                                    " panel")
-                    return
-
-            self.ui.N_scan_steps_sb.setValue(self.scanner.scan_parameters.Nsteps)
-
-            # check if the modules are initialized
-            for module in self.modules_manager.actuators:
-                if not module.initialized_state:
-                    raise exceptions.DAQ_ScanException('module ' + module.title + " is not initialized")
-
-            for module in self.modules_manager.detectors:
-                if not module.initialized_state:
-                    raise exceptions.DAQ_ScanException('module ' + module.title + " is not initialized")
-
-            self.ui.start_scan_pb.setEnabled(True)
-            self.ui.stop_scan_pb.setEnabled(True)
-
-            return True
-
-        except Exception as e:
-            logger.exception(str(e))
-            self.ui.start_scan_pb.setEnabled(False)
-            self.ui.stop_scan_pb.setEnabled(False)
-
-    def set_metadata_about_current_scan(self):
-        """
-            Set the date/time and author values of the scan_info child of the scan_attributes tree.
-            Show the 'scan' file attributes.
-
-            See Also
-            --------
-            show_file_attributes
-        """
-        date = QDateTime(QDate.currentDate(), QTime.currentTime())
-        self.scan_attributes.child('scan_info', 'date_time').setValue(date)
-        self.scan_attributes.child('scan_info', 'author').setValue(
-            self.dataset_attributes.child('dataset_info', 'author').value())
-        if not self.batch_started:
-            res = self.show_file_attributes('scan')
-        else:
-            res = True
-        return res
-
-    def set_metadata_about_dataset(self):
-        """
-            Set the date value of the data_set_info-date_time child of the data_set_attributes tree.
-            Show the 'dataset' file attributes.
-
-            See Also
-            --------
-            show_file_attributes
-        """
-        date = QDateTime(QDate.currentDate(), QTime.currentTime())
-        self.dataset_attributes.child('dataset_info', 'date_time').setValue(date)
-        res = self.show_file_attributes('dataset')
-        return res
-
-    def start_scan(self):
-        """
-            Start an acquisition calling the set_scan function.
-            Emit the command_DAQ signal "start_acquisition".
-
-            See Also
-            --------
-            set_scan
-        """
-        self.ui.status_message.setText('Starting acquisition')
-        self.dashboard.overshoot = False
-        self.plot_2D_ini = False
-        self.plot_1D_ini = False
-        self.bkg_container = None
-        self.scan_positions = []
-        self.curvilinear_values = []
-        res = self.set_scan()
-        if res:
-
-            # deactivate module controls usiong remote_control
-            if hasattr(self.dashboard, 'remote_manager'):
-                remote_manager = getattr(self.dashboard, 'remote_manager')
-                remote_manager.activate_all(False)
-
-            # save settings from move modules
-            move_modules_names = [mod.title for mod in self.modules_manager.actuators]
-            for ind_move, move_name in enumerate(move_modules_names):
-                move_group_name = 'Move{:03d}'.format(ind_move)
-                if not self.h5saver.is_node_in_group(self.h5saver.current_scan_group, move_group_name):
-                    self.h5saver.add_move_group(self.h5saver.current_scan_group, title='',
-                                                settings_as_xml=pymodaq.daq_utils.parameter.ioxml.parameter_to_xml_string(
-                                                    self.modules_manager.actuators[ind_move].settings),
-                                                metadata=dict(name=move_name))
-
-            # save settings from detector modules
-            detector_modules_names = [mod.title for mod in self.modules_manager.detectors]
-            for ind_det, det_name in enumerate(detector_modules_names):
-                det_group_name = 'Detector{:03d}'.format(ind_det)
-                if not self.h5saver.is_node_in_group(self.h5saver.current_scan_group, det_group_name):
-                    settings_str = pymodaq.daq_utils.parameter.ioxml.parameter_to_xml_string(
-                        self.modules_manager.detectors[ind_det].settings)
-                    try:
-                        if 'Data0D' not in [viewer.viewer_type for viewer in
-                                            self.modules_manager.detectors[
-                                                ind_det].ui.viewers]:  # no roi_settings in viewer0D
-                            settings_str = b'<All_settings title="All Settings" type="group">' + settings_str
-                            for ind_viewer, viewer in enumerate(self.modules_manager.detectors[ind_det].ui.viewers):
-                                if hasattr(viewer, 'roi_manager'):
-                                    settings_str += '<Viewer{:0d}_ROI_settings title="ROI Settings" type="group">'.format(
-                                        ind_viewer).encode()
-                                    settings_str += pymodaq.daq_utils.parameter.ioxml.parameter_to_xml_string(
-                                        viewer.roi_manager.settings) + '</Viewer{:0d}_ROI_settings>'.format(
-                                        ind_viewer).encode()
-                            settings_str += b'</All_settings>'
-                    except Exception as e:
-                        logger.exception(str(e))
-
-                    self.h5saver.add_det_group(self.h5saver.current_scan_group,
-                                               settings_as_xml=settings_str, metadata=dict(name=det_name))
-
-            # mandatory to deal with multithreads
-            if self.scan_thread is not None:
-                self.command_DAQ_signal.disconnect()
-                if self.scan_thread.isRunning():
-                    self.scan_thread.terminate()
-                    while not self.scan_thread.isFinished():
-                        QThread.msleep(100)
-                    self.scan_thread = None
-
-            self.scan_thread = QThread()
-
-            scan_acquisition = DAQ_Scan_Acquisition(self.settings, self.scanner.settings, self.h5saver.settings,
-                                                    self.modules_manager, self.scanner.scan_parameters)
-            if config['scan']['scan_in_thread']:
-                scan_acquisition.moveToThread(self.scan_thread)
-            self.command_DAQ_signal[list].connect(scan_acquisition.queue_command)
-            scan_acquisition.scan_data_tmp[OrderedDict].connect(self.update_scan_GUI)
-            scan_acquisition.status_sig[list].connect(self.thread_status)
-
-            self.scan_thread.scan_acquisition = scan_acquisition
-            self.scan_thread.start()
-
-            self.ui.set_scan_pb.setEnabled(False)
-            self.ui.set_ini_positions_pb.setEnabled(False)
-            self.ui.start_scan_pb.setEnabled(False)
-            QtWidgets.QApplication.processEvents()
-            self.ui.scan_done_LED.set_as_false()
-
-            self.command_DAQ_signal.emit(["start_acquisition"])
-            self.ui.status_message.setText('Running acquisition')
-            logger.info('Running acquisition')
-
-    def set_ini_positions(self):
-        """
-            Send the command_DAQ signal with "set_ini_positions" list item as an attribute.
-        """
-        self.command_DAQ_signal.emit(["set_ini_positions"])
-
-    def stop_scan(self):
-        """
-            Emit the command_DAQ signal "stop_acquisiion".
-
-            See Also
-            --------
-            set_ini_positions
-        """
-        self.ui.status_message.setText('Stoping acquisition')
-        self.command_DAQ_signal.emit(["stop_acquisition"])
-
-        if not self.dashboard.overshoot:
-            self.set_ini_positions()  # do not set ini position again in case overshoot fired
-            status = 'Data Acquisition has been stopped by user'
-        else:
-            status = 'Data Acquisition has been stopped due to overshoot'
-
-        self.update_status(status, log_type='log')
-        self.ui.status_message.setText('')
-
-        self.ui.set_scan_pb.setEnabled(True)
-        self.ui.set_ini_positions_pb.setEnabled(True)
-        self.ui.start_scan_pb.setEnabled(True)
-
-    def do_scan(self, start_scan=True):
-        """Public method to start the scan programmatically"""
-        if start_scan:
-            if not self.ui.start_scan_pb.isEnabled():
-                self.ui.set_scan_pb.click()
-                QtWidgets.QApplication.processEvents()
-            self.ui.start_scan_pb.click()
-        else:
-            self.ui.stop_scan_pb.click()
-
-
-class DAQ_Scan_Acquisition(QObject):
-    """
-        =========================== ========================================
-
-        =========================== ========================================
-
-    """
-    scan_data_tmp = Signal(OrderedDict)
-    status_sig = Signal(list)
-
-    def __init__(self, settings=None, scan_settings=None, h5saver=None, modules_manager=None, scan_parameters=None):
-
-        """
-            DAQ_Scan_Acquisition deal with the acquisition part of daq_scan, that is transferring commands to modules,
-            getting back data, saviong and letting know th UI about the scan status
-
-        """
-        
-        super().__init__()
-
-        self.stop_scan_flag = False
-        self.settings = settings
-        self.scan_settings = scan_settings
-        self.Naverage = self.settings.child('scan_options', 'scan_average').value()
-        self.ind_average = 0
-        self.ind_scan = 0
-        self.scan_parameters = scan_parameters
-        self.isadaptive = self.scan_parameters.scan_subtype == 'Adaptive'
-        self.curvilinear_array = None
-        self.modules_manager = modules_manager
-        self.modules_manager.timeout_signal.connect(self.timeout)
-        self.timeout_scan_flag = False
-
-        self.curvilinear = None  # used for adaptive/Tabular scan mode
-
-        self.scan_x_axis = None
-        self.scan_x_axis2D = None
-        self.scan_y_axis = None
-        self.scan_z_axis = None
-        self.scan_x_axis_unique = None
-        self.scan_y_axis_unique = None
-        self.scan_z_axis_unique = None
-        self.scan_shape = None
-
-        self.scan_read_positions = []
-        self.scan_read_datas = []
-        self.move_done_flag = False
-        self.det_done_flag = False
-
-        self.det_done_datas = OrderedDict()
-
-        self.h5saver = H5Saver()
-        self.h5saver.settings.restoreState(h5saver.saveState())
-        self.h5saver.init_file(addhoc_file_path=self.h5saver.settings.child(('current_h5_file')).value())
-
-        self.h5_det_groups = []
-        self.h5_move_groups = []
-        self.channel_arrays = OrderedDict([])
-
-        # save settings from move modules
-        for ind_move in range(self.modules_manager.Nactuators):
-            move_group_name = 'Move{:03d}'.format(ind_move)
-            self.h5_move_groups.append(self.h5saver.get_node(self.h5saver.current_scan_group, move_group_name))
-
-        # save settings from detector modules
-        for ind_det in range(self.modules_manager.Ndetectors):
-            det_group_name = 'Detector{:03d}'.format(ind_det)
-            self.h5_det_groups.append(self.h5saver.get_node(self.h5saver.current_scan_group, det_group_name))
-
-    @Slot(list)
-    def queue_command(self, command):
-        """
-            Treat the queue of commands from the current command to act, between :
-                * *start_acquisition*
-                * *stop_acquisition*
-                * *set_ini_position*
-                * *move_stages*
-
-            =============== ============== =========================
-            **Parameters**    **Type**      **Description**
-            command           string list   the command string list
-            =============== ============== =========================
-
-            See Also
-            --------
-            start_acquisition, set_ini_positions, move_stages
-        """
-        if command[0] == "start_acquisition":
-            self.start_acquisition()
-
-        elif command[0] == "stop_acquisition":
-            self.stop_scan_flag = True
-
-        elif command[0] == "set_ini_positions":
-            self.set_ini_positions()
-
-        elif command[0] == "move_stages":
-            self.modules_manager.move_actuators(command[1])
-
-    def set_ini_positions(self):
-        """
-            | Set the positions from the scan_move attribute.
-            |
-            | Move all activated modules to specified positions.
-            | Check the module corresponding to the name assigned in pos.
-
-            See Also
-            --------
-            DAQ_Move_main.daq_move.move_Abs
-        """
-        try:
-            if self.scan_parameters.scan_subtype != 'Adaptive':
-                self.modules_manager.move_actuators(list(self.scan_parameters.positions[0]))
-
-        except Exception as e:
-            logger.exception(str(e))
-
-    def init_data(self):
-        self.channel_arrays = OrderedDict([])
-        for ind_det, det_name in enumerate(self.modules_manager.get_names(self.modules_manager.detectors)):
-            datas = self.modules_manager.det_done_datas[det_name]
-            det_group = self.h5_det_groups[ind_det]
-            self.channel_arrays[det_name] = OrderedDict([])
-            data_types = ['data0D', 'data1D']
-            if self.h5saver.settings.child(('save_2D')).value():
-                data_types.extend(['data2D', 'dataND'])
-
-            det_mod = self.modules_manager.get_mod_from_name(det_name)
-            if det_mod.bkg is not None and det_mod.is_bkg:
-                bkg_container = OrderedDict([])
-                det_mod.process_data(det_mod.bkg, bkg_container)
-
-            for data_type in data_types:
-                if data_type in datas.keys():
-                    if datas[data_type] is not None:
-                        if len(datas[data_type]) != 0:
-                            data_raw_roi = [datas[data_type][key]['source'] for key in datas[data_type]]
-                            if not (self.h5saver.settings.child(
-                                    ('save_raw_only')).value() and 'raw' not in data_raw_roi):
-                                if not self.h5saver.is_node_in_group(det_group, data_type):
-                                    self.channel_arrays[det_name][data_type] = OrderedDict([])
-                                    data_group = self.h5saver.add_data_group(det_group, data_type)
-                                    for ind_channel, channel in enumerate(datas[data_type]):  # list of OrderedDict
-                                        if not (
-                                            self.h5saver.settings.child(
-                                                'save_raw_only').value() and datas[
-                                                data_type][channel]['source'] != 'raw'):
-                                            channel_group = self.h5saver.add_CH_group(data_group, title=channel)
-                                            self.channel_arrays[det_name][data_type]['parent'] = channel_group
-                                            data_tmp = datas[data_type][channel]
-
-                                            if det_mod.bkg is not None and det_mod.is_bkg:
-                                                if channel in bkg_container[data_type]:
-                                                    data_tmp['bkg'] = bkg_container[data_type][channel]['data']
-                                                    if data_tmp['bkg'].shape == ():  # in case one get a numpy.float64 object
-                                                        data_tmp['bkg'] = np.array([data_tmp['bkg']])
-
-                                            self.channel_arrays[det_name][data_type][channel] = \
-                                                self.h5saver.add_data(channel_group,
-                                                                      data_tmp,
-                                                                      scan_type=self.scan_parameters.scan_type,
-                                                                      scan_subtype=self.scan_parameters.scan_subtype,
-                                                                      scan_shape=self.scan_shape, init=True,
-                                                                      add_scan_dim=True,
-                                                                      enlargeable=self.isadaptive)
-            pass
-
-    def start_acquisition(self):
-        try:
-
-            self.modules_manager.connect_actuators()
-            self.modules_manager.connect_detectors()
-
-            self.scan_read_positions = []
-            self.scan_read_datas = []
-            self.stop_scan_flag = False
-            Naxes = self.scan_parameters.Naxes
-            scan_type = self.scan_parameters.scan_type
-            self.navigation_axes = []
-
-            if scan_type == 'Scan1D' or scan_type == 'Scan2D':
-                """creates the X_axis and Y_axis valid only for 1D or 2D scans """
-                if self.isadaptive:
-                    self.scan_x_axis = np.array([0.0, ])
-                    self.scan_x_axis_unique = np.array([0.0, ])
-                else:
-                    self.scan_x_axis = self.scan_parameters.positions[:, 0]
-                    self.scan_x_axis_unique = self.scan_parameters.axes_unique[0]
-
-                if not self.h5saver.is_node_in_group(self.h5saver.current_scan_group, 'scan_x_axis'):
-                    x_axis_meta = dict(
-                        units=self.modules_manager.actuators[0].settings.child('move_settings', 'units').value(),
-                        label=self.modules_manager.get_names(self.modules_manager.actuators)[0],
-                        nav_index=0)
-
-                    self.navigation_axes.append(self.h5saver.add_navigation_axis(self.scan_x_axis,
-                                                                                 self.h5saver.current_scan_group,
-                                                                                 axis='x_axis',
-                                                                                 metadata=x_axis_meta,
-                                                                                 enlargeable=self.isadaptive))
-
-                if not self.isadaptive:
-                    if self.scan_parameters.scan_subtype == 'Linear back to start':
-                        self.scan_shape = [len(self.scan_x_axis)]
-                    else:
-                        self.scan_shape = [len(self.scan_x_axis_unique)]
-                else:
-                    self.scan_shape = [0]
-
-                if scan_type == 'Scan2D':  # "means scan 2D"
-                    if self.isadaptive:
-                        self.scan_y_axis = np.array([0.0, ])
-                        self.scan_y_axis_unique = np.array([0.0, ])
-                    else:
-                        self.scan_y_axis = self.scan_parameters.positions[:, 1]
-                        self.scan_y_axis_unique = self.scan_parameters.axes_unique[1]
-
-                    if not self.h5saver.is_node_in_group(self.h5saver.current_scan_group, 'scan_y_axis'):
-                        y_axis_meta = dict(
-                            units=self.modules_manager.actuators[1].settings.child('move_settings', 'units').value(),
-                            label=self.modules_manager.get_names(self.modules_manager.actuators)[1],
-                            nav_index=1)
-                        self.navigation_axes.append(self.h5saver.add_navigation_axis(self.scan_y_axis,
-                                                                                     self.h5saver.current_scan_group,
-                                                                                     axis='y_axis',
-                                                                                     metadata=y_axis_meta,
-                                                                                     enlargeable=self.isadaptive))
-                    if not self.isadaptive:
-                        self.scan_shape.append(len(self.scan_y_axis_unique))
-                    else:
-                        self.scan_shape.append(0)
-
-            elif scan_type == 'Sequential':
-                """Creates axes labelled by the index within the sequence"""
-                self.scan_shape = [len(ax) for ax in self.scan_parameters.axes_unique]
-                for ind in range(Naxes):
-                    if not self.h5saver.is_node_in_group(self.h5saver.current_scan_group,
-                                                         'scan_{:02d}_axis'.format(ind)):
-                        axis_meta = dict(
-                            units=self.modules_manager.actuators[ind].settings.child('move_settings', 'units').value(),
-                            label=self.modules_manager.get_names(self.modules_manager.actuators)[ind],
-                            nav_index=ind)
-                        self.navigation_axes.append(
-                            self.h5saver.add_navigation_axis(self.scan_parameters.axes_unique[ind],
-                                                             self.h5saver.current_scan_group,
-                                                             axis=f'{ind:02d}_axis', metadata=axis_meta))
-
-            elif scan_type == 'Tabular':
-                """Creates axes labelled by the index within the sequence"""
-                if not self.isadaptive:
-                    self.scan_shape = [self.scan_parameters.Nsteps, ]
-                    nav_axes = [self.scan_parameters.positions[:, ind] for ind in range(Naxes)]
-                else:
-                    self.scan_shape = [0, Naxes]
-                    nav_axes = [np.array([0.0, ]) for ind in range(Naxes)]
-
-                for ind in range(Naxes):
-                    if not self.h5saver.is_node_in_group(self.h5saver.current_scan_group,
-                                                         'scan_{:02d}_axis'.format(ind)):
-                        axis_meta = dict(
-                            units=self.modules_manager.actuators[ind].settings.child('move_settings', 'units').value(),
-                            label=self.modules_manager.get_names(self.modules_manager.actuators)[ind],
-                            nav_index=ind)
-                        self.navigation_axes.append(self.h5saver.add_navigation_axis(nav_axes[ind],
-                                                                                     self.h5saver.current_scan_group,
-                                                                                     axis=f'{ind:02d}_axis',
-                                                                                     metadata=axis_meta,
-                                                                                     enlargeable=self.isadaptive))
-
-                if self.isadaptive:
-                    if not self.h5saver.is_node_in_group(self.h5saver.current_scan_group, 'Curvilinear_axis'):
-                        axis_meta = dict(units='',
-                                         label='Curvilinear coordinate',
-                                         nav_index=-1)
-                        self.curvilinear_array = self.h5saver.add_navigation_axis(np.array([0.0, ]),
-                                                                                  self.h5saver.current_scan_group,
-                                                                                  axis='curvilinear_axis',
-                                                                                  metadata=axis_meta,
-                                                                                  enlargeable=self.isadaptive)
-
-            if self.Naverage > 1:
-                self.scan_shape.append(self.Naverage)
-
-            if self.isadaptive:
-                """
-                adaptive_losses = dict(
-                loss1D=['default', 'curvature', 'uniform'],
-                loss2D=['default', 'resolution', 'uniform', 'triangle'])
-                """
-                if self.scan_parameters.scan_type == 'Scan1D' or self.scan_parameters.scan_type == 'Tabular':
-                    if self.scan_parameters.adaptive_loss == 'curvature':
-                        loss = adaptive.learner.learner1D.curvature_loss_function()
-                    elif self.scan_parameters.adaptive_loss == 'uniform':
-                        loss = adaptive.learner.learner1D.uniform_loss
-                    else:
-                        loss = adaptive.learner.learner1D.default_loss
-                    if self.scan_parameters.scan_type == 'Scan1D':
-                        bounds = [self.scan_parameters.starts[0], self.scan_parameters.stops[0]]
-                    else:
-                        length = 0.
-                        for vec in self.scan_parameters.vectors:
-                            length += vec.norm()
-                        bounds = [0., length]
-
-                    learner = adaptive.learner.learner1D.Learner1D(None, bounds=bounds,
-                                                                   loss_per_interval=loss)
-
-                elif self.scan_parameters.scan_type == 'Scan2D':
-                    if self.scan_parameters.adaptive_loss == 'resolution':
-                        loss = adaptive.learner.learner2D.resolution_loss_function(
-                            min_distance=self.scan_parameters.steps[0] / 100,
-                            max_distance=self.scan_parameters.steps[1] / 100)
-                    elif self.scan_parameters.adaptive_loss == 'uniform':
-                        loss = adaptive.learner.learner2D.uniform_loss
-                    elif self.scan_parameters.adaptive_loss == 'triangle':
-                        loss = adaptive.learner.learner2D.triangle_loss
-                    else:
-                        loss = adaptive.learner.learner2D.default_loss
-
-                    learner = adaptive.learner.learner2D.Learner2D(None,
-                                                                   bounds=[b for b in zip(self.scan_parameters.starts,
-                                                                                          self.scan_parameters.stops)],
-                                                                   loss_per_triangle=loss)
-
-                else:
-                    logger.warning('Adaptive for more than 2 axis is not currently done (sequential adaptive)')
-                    return
-
-            self.status_sig.emit(["Update_Status", "Acquisition has started", 'log'])
-
-            self.timeout_scan_flag = False
-            for ind_average in range(self.Naverage):
-                self.ind_average = ind_average
-                self.ind_scan = -1
-                while True:
-                    self.ind_scan += 1
-                    if not self.isadaptive:
-                        if self.ind_scan >= len(self.scan_parameters.positions):
-                            break
-                        positions = self.scan_parameters.positions[self.ind_scan]  # get positions
-                    else:
-                        positions = learner.ask(1)[0][-1]  # next point to probe
-                        if self.scan_parameters.scan_type == 'Tabular':  # translate normalized curvilinear position to real coordinates
-                            self.curvilinear = positions
-                            length = 0.
-                            for v in self.scan_parameters.vectors:
-                                length += v.norm()
-                                if length >= self.curvilinear:
-                                    vec = v
-                                    frac_curvilinear = (self.curvilinear - (length - v.norm())) / v.norm()
-                                    break
-
-                            position = (vec.vectorize() * frac_curvilinear).translate_to(vec.p1()).p2()
-                            positions = [position.x(), position.y()]
-
-                    self.status_sig.emit(["Update_scan_index", [self.ind_scan, ind_average]])
-
-                    if self.stop_scan_flag or self.timeout_scan_flag:
-                        break
-
-                    #move motors of modules and wait for move completion
-                    positions = self.modules_manager.order_positions(self.modules_manager.move_actuators(positions))
-
-                    QThread.msleep(self.settings.child('time_flow', 'wait_time_between').value())
-
-                    #grab datas and wait for grab completion
-                    self.det_done(self.modules_manager.grab_datas(positions=positions), positions)
-
-                    if self.isadaptive:
-                        det_channel = self.modules_manager.get_selected_probed_data()
-                        det, channel = det_channel[0].split('/')
-                        if self.scan_parameters.scan_type == 'Tabular':
-                            self.curvilinear_array.append(np.array([self.curvilinear]))
-                            new_positions = self.curvilinear
-                        elif self.scan_parameters.scan_type == 'Scan1D':
-                            new_positions = positions[0]
-                        else:
-                            new_positions = positions[:]
-
-                        learner.tell(new_positions, self.modules_manager.det_done_datas[det]['data0D'][channel]['data'])
-
-                    # daq_scan wait time
-                    QThread.msleep(self.settings.child('time_flow', 'wait_time').value())
-
-            self.h5saver.h5_file.flush()
-            self.modules_manager.connect_actuators(False)
-            self.modules_manager.connect_detectors(False)
-
-            self.status_sig.emit(["Update_Status", "Acquisition has finished", 'log'])
-            self.status_sig.emit(["Scan_done"])
-
-        except Exception as e:
-            logger.exception(str(e))
-            # self.status_sig.emit(["Update_Status", getLineInfo() + str(e), 'log'])
-
-    def wait_for_det_done(self):
-        self.timeout_scan_flag = False
-        self.timer.start(self.settings.child('time_flow', 'timeout').value())
-        while not (self.det_done_flag or self.timeout_scan_flag):
-            # wait for grab done signals to end
-            QtWidgets.QApplication.processEvents()
-
-    def det_done(self, det_done_datas, positions=[]):
-        """
-            | Initialize 0D/1D/2D datas from given data parameter.
-            | Update h5_file group and array.
-            | Save 0D/1D/2D... datas.
-        Parameters
-        ----------
-        det_done_datas: (OrderedDict) on the form OrderedDict
-                    (det0=OrderedDict(data0D=None, data1D=None, data2D=None, dataND=None),
-                     det1=OrderedDict(data0D=None, data1D=None, data2D=None, dataND=None),...)
-        """
-        try:
-            self.scan_read_datas = det_done_datas[
-                self.settings.child('scan_options', 'plot_from').value()].copy()
-
-            if self.ind_scan == 0 and self.ind_average == 0:  # first occurence=> initialize the channels
-                self.init_data()
-
-            if not self.isadaptive:
-                if self.scan_parameters.scan_type == 'Tabular':
-                    indexes = np.array([self.ind_scan])
-                else:
-                    indexes = self.scan_parameters.axes_indexes[self.ind_scan]
-
-                if self.Naverage > 1:
-                    indexes = list(indexes)
-                    indexes.append(self.ind_average)
-
-                indexes = tuple(indexes)
-
-            if self.isadaptive:
-                for ind_ax, nav_axis in enumerate(self.navigation_axes):
-                    nav_axis.append(np.array(positions[ind_ax]))
-
-            for ind_det, det_name in enumerate(self.modules_manager.get_names(self.modules_manager.detectors)):
-                datas = det_done_datas[det_name]
-
-                data_types = ['data0D', 'data1D']
-                if self.h5saver.settings.child(('save_2D')).value():
-                    data_types.extend(['data2D', 'dataND'])
-
-                for data_type in data_types:
-                    if data_type in datas.keys():
-                        if datas[data_type] is not None:
-                            if len(datas[data_type]) != 0:
-                                for ind_channel, channel in enumerate(datas[data_type]):
-                                    if not (self.h5saver.settings.child(
-                                            'save_raw_only').value() and datas[data_type][channel]['source'] != 'raw'):
-                                        if not self.isadaptive:
-                                            self.channel_arrays[
-                                                det_name][data_type][channel].__setitem__(
-                                                indexes, value=det_done_datas[det_name][data_type][channel]['data'])
-                                        else:
-                                            data = det_done_datas[det_name][data_type][channel]['data']
-                                            if isinstance(data, float) or isinstance(data, int):
-                                                data = np.array([data])
-                                            self.channel_arrays[det_name][data_type][channel].append(data)
-
-            self.det_done_flag = True
-
-            self.scan_data_tmp.emit(OrderedDict(positions=self.modules_manager.move_done_positions,
-                                                datas=self.scan_read_datas,
-                                                curvilinear=self.curvilinear))
-        except Exception as e:
-            logger.exception(str(e))
-            # self.status_sig.emit(["Update_Status", getLineInfo() + str(e), 'log'])
-
-    def timeout(self):
-        """
-            Send the status signal *'Time out during acquisition'*.
-        """
-        self.timeout_scan_flag = True
-        self.status_sig.emit(["Update_Status", "Timeout during acquisition", 'log'])
-        self.status_sig.emit(["Timeout"])
-
-
-def main(init_qt=True):
-    if init_qt:  # used for the test suite
-        app = QtWidgets.QApplication(sys.argv)
-        if config['style']['darkstyle']:
-            import qdarkstyle
-            app.setStyleSheet(qdarkstyle.load_stylesheet())
-
-    from pymodaq.dashboard import DashBoard
-
-    win = QtWidgets.QMainWindow()
-    area = pymodaq.daq_utils.gui_utils.dock.DockArea()
-    win.setCentralWidget(area)
-    win.resize(1000, 500)
-    win.setWindowTitle('PyMoDAQ Dashboard')
-
-    dashboard = DashBoard(area)
-    daq_scan = None
-    file = Path(get_set_preset_path()).joinpath(f"{config('presets', 'default_preset_for_scan')}.xml")
-    if file.exists():
-        dashboard.set_preset_mode(file)
-        daq_scan = dashboard.load_scan_module()
-    else:
-        msgBox = QtWidgets.QMessageBox()
-        msgBox.setText(f"The default file specified in the configuration file does not exists!\n"
-                       f"{file}\n"
-                       f"Impossible to load the DAQ_Scan Module")
-        msgBox.setStandardButtons(msgBox.Ok)
-        ret = msgBox.exec()
-
-    if init_qt:
-        sys.exit(app.exec_())
-    return dashboard, daq_scan, win
-
-
-if __name__ == '__main__':
-    main()