pyegeria 5.3.6.2.4__py3-none-any.whl → 5.3.6.3__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (31) hide show
  1. pyegeria/__init__.py +3 -0
  2. pyegeria/commands/cat/{freddies-inbox → dr_egeria_inbox}/freddie_intro.md +64 -16
  3. pyegeria/commands/cat/{freddie_jupyter.py → dr_egeria_jupyter.py} +8 -16
  4. pyegeria/commands/cat/{freddie_md.py → dr_egeria_md.py} +29 -32
  5. pyegeria/commands/cat/glossary_actions.py +59 -1
  6. pyegeria/commands/cat/list_categories.py +185 -0
  7. pyegeria/commands/cat/list_glossaries.py +26 -33
  8. pyegeria/commands/cat/list_terms.py +47 -47
  9. pyegeria/commands/cli/egeria.py +51 -61
  10. pyegeria/commands/cli/egeria_cat.py +53 -31
  11. pyegeria/create_tech_guid_lists.py +2 -5
  12. pyegeria/glossary_browser_omvs.py +257 -105
  13. pyegeria/glossary_manager_omvs.py +148 -1591
  14. pyegeria/md_processing_utils.py +816 -0
  15. {pyegeria-5.3.6.2.4.dist-info → pyegeria-5.3.6.3.dist-info}/METADATA +1 -1
  16. {pyegeria-5.3.6.2.4.dist-info → pyegeria-5.3.6.3.dist-info}/RECORD +21 -29
  17. {pyegeria-5.3.6.2.4.dist-info → pyegeria-5.3.6.3.dist-info}/entry_points.txt +5 -0
  18. pyegeria/commands/cat/freddie_jup.py +0 -124
  19. pyegeria/commands/cat/freddie_utils.py +0 -590
  20. pyegeria/commands/cat/freddies-outbox/Terms-2025-03-06-13-19-29-Report.md +0 -69
  21. pyegeria/commands/cat/freddies-outbox/Terms-2025-03-06-13-20-30-Update-Form.md +0 -78
  22. pyegeria/commands/cat/glossary_creation_experiment.ipynb +0 -235
  23. pyegeria/test_j.html +0 -0
  24. pyegeria/test_m.html +0 -213
  25. pyegeria/test_m1.html +0 -273
  26. pyegeria/test_mer.ipynb +0 -596
  27. pyegeria/test_w.html +0 -213
  28. /pyegeria/commands/cat/{freddies-inbox → dr_egeria_inbox}/glossary_creation_experiment.ipynb +0 -0
  29. /pyegeria/commands/cat/{freddies-inbox → dr_egeria_inbox}/glossary_exp.md +0 -0
  30. {pyegeria-5.3.6.2.4.dist-info → pyegeria-5.3.6.3.dist-info}/LICENSE +0 -0
  31. {pyegeria-5.3.6.2.4.dist-info → pyegeria-5.3.6.3.dist-info}/WHEEL +0 -0
pyegeria/test_m1.html DELETED
@@ -1,273 +0,0 @@
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-
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- <!DOCTYPE html>
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- <html lang="en">
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- <head>
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- <meta charset="UTF-8">
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- <meta name="viewport" content="width=device-width, initial-scale=1.0">
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- <title>Mermaid Diagram with Centered Pan and Zoom</title>
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- <!-- Load Mermaid.js -->
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- <script src="https://cdn.jsdelivr.net/npm/mermaid/dist/mermaid.min.js"></script>
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- <style>
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- body {
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- font-family: Arial, sans-serif;
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- background-color: #f4f4f4;
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- margin: 0;
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- padding: 0;
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- display: flex;
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- justify-content: center;
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- align-items: center;
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- height: 100vh;
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- }
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- .diagram-container {
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- width: 90%;
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- max-width: 800px;
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- padding: 20px;
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- border: 1px solid #ddd;
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- border-radius: 12px;
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- background-color: white;
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- box-shadow: 0 4px 8px rgba(0, 0, 0, 0.1);
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- text-align: center;
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- position: relative;
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- }
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- .diagram-header {
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- margin-bottom: 20px;
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- font-size: 1.8rem;
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- font-weight: bold;
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- color: #007acc;
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- }
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- .pan-zoom-container {
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- position: relative;
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- width: 100%;
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- height: 500px;
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- overflow: hidden;
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- border: 1px solid #ccc;
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- background-color: #f9f9f9;
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- cursor: grab;
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- }
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- position: absolute;
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- }
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- cursor: grabbing;
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- }
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- </style>
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- </head>
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- <body>
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- <div class="diagram-container">
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- <h2 class='diagram-header'>Component for Solution Blueprint - Clinical Trial Management Solution Blueprint </h2>
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- GUID: c4f8d707-7c85-4125-b5fd-c3257a2ef2ef
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- <div class="pan-zoom-container">
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- <div id="Component_for_Solution_Blueprint_-_Clinical_Trial_Management_Solution_Blueprint_" class="mermaid pan-zoom-content">
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- flowchart TD
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- %%{init: {"flowchart": {"htmlLabels": false}} }%%
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-
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- subgraph c4f8d707-7c85-4125-b5fd-c3257a2ef2ef [Components and Actors]
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- fc2de77f-7320-48ea-8750-d434c6e870db@{ shape: text, label: "*Description*
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- **A description of how a clinical trial is managed in Coco Pharmaceuticals.**"}
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- 37b8560d-84d4-434b-9b0d-105420fcc924@{ shape: subproc, label: "*Solution Component*
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- **Certify Hospital**"}
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- f37f3735-28a1-4e03-9ff5-3fe2f137f661@{ shape: trap-t, label: "*Solution Actor Role*
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- **Clinical Trial Manager**"}
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- f37f3735-28a1-4e03-9ff5-3fe2f137f661-->|"Certifier"|37b8560d-84d4-434b-9b0d-105420fcc924
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- 72a86eec-9734-4bc0-babb-4fec0aa7c9ff@{ shape: docs, label: "*Solution Component*
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- **Assemble Treatment Assessment Report**"}
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- 48bc201e-3d4e-4beb-bdb2-0fd9d134f6d5@{ shape: rect, label: "*Solution Component*
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- **Treatment Efficacy Evidence**"}
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- 48bc201e-3d4e-4beb-bdb2-0fd9d134f6d5-->|"Solution Linking Wire"|72a86eec-9734-4bc0-babb-4fec0aa7c9ff
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- f37f3735-28a1-4e03-9ff5-3fe2f137f661-->|"Author"|72a86eec-9734-4bc0-babb-4fec0aa7c9ff
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- b5c8da4c-f925-4cf1-8294-e43cd2c1a584@{ shape: rect, label: "*Solution Component*
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- **Analyse Patient Data**"}
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- b5c8da4c-f925-4cf1-8294-e43cd2c1a584-->|"Solution Linking Wire"|48bc201e-3d4e-4beb-bdb2-0fd9d134f6d5
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- 7f5dca65-50b4-4103-9ac7-3a406a09047a@{ shape: subproc, label: "*Solution Component*
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- **Weekly Measurements Onboarding Pipeline**"}
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- 07705e15-efff-4f80-8992-f04ac85e0ef1@{ shape: rect, label: "*Solution Component*
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- **Landing Folder Cataloguer**"}
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- 07705e15-efff-4f80-8992-f04ac85e0ef1-->|"Solution Linking Wire"|7f5dca65-50b4-4103-9ac7-3a406a09047a
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- f37f3735-28a1-4e03-9ff5-3fe2f137f661-->|"Steward"|7f5dca65-50b4-4103-9ac7-3a406a09047a
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- b0290339-c96c-4b05-904f-12fc98e54e14@{ shape: trap-t, label: "*Solution Actor Role*
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- **Certified Data Engineer**"}
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- b0290339-c96c-4b05-904f-12fc98e54e14-->|"Steward"|7f5dca65-50b4-4103-9ac7-3a406a09047a
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- d48f579f-76d3-4c49-b1b4-575f5645a9d0@{ shape: lin-cyl, label: "*Solution Component*
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- **Treatment Validation Sandbox**"}
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- 26c07ca4-3b8e-484b-812b-36c1ace4b275@{ shape: rect, label: "*Solution Component*
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- **Populate Sandbox**"}
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- 26c07ca4-3b8e-484b-812b-36c1ace4b275-->|"Solution Linking Wire"|d48f579f-76d3-4c49-b1b4-575f5645a9d0
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- ee2bb773-e630-4cf9-bdf1-7c2dd64fe4ec@{ shape: processes, label: "*Solution Component*
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- **Hospital Processes**"}
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- a8bd84ca-0aae-4534-b0e8-87e8659467a6@{ shape: trap-t, label: "*Solution Actor Role*
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- **Clinical Trial Participating Hospital Coordinator**"}
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- a8bd84ca-0aae-4534-b0e8-87e8659467a6-->|"Coordinator on behalf of hospital"|ee2bb773-e630-4cf9-bdf1-7c2dd64fe4ec
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- 30adaab5-8870-47a8-8ae9-facbf84cb05a@{ shape: trap-t, label: "*Solution Actor Role*
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- **Clinical Trial Participating Hospital**"}
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- 30adaab5-8870-47a8-8ae9-facbf84cb05a-->|"Owner"|ee2bb773-e630-4cf9-bdf1-7c2dd64fe4ec
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- d48f579f-76d3-4c49-b1b4-575f5645a9d0-->|"Solution Linking Wire"|b5c8da4c-f925-4cf1-8294-e43cd2c1a584
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- ece17806-836c-4756-b3a2-2d12dde215f6@{ shape: trap-t, label: "*Solution Actor Role*
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- **New Treatment Data Scientist**"}
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- ece17806-836c-4756-b3a2-2d12dde215f6-->|"Data Analyser"|b5c8da4c-f925-4cf1-8294-e43cd2c1a584
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- 0c757e35-8a42-4d5f-b01b-c72a6cea65cc@{ shape: trap-t, label: "*Solution Actor Role*
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- **New Treatment Researcher.**"}
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- 0c757e35-8a42-4d5f-b01b-c72a6cea65cc-->|"Results Interpreter"|b5c8da4c-f925-4cf1-8294-e43cd2c1a584
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- e9c2f911-ffcb-40c6-aeee-8c4d43811576@{ shape: subproc, label: "*Solution Component*
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- **Onboard Hospital**"}
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- b0290339-c96c-4b05-904f-12fc98e54e14-->|"Initiator"|e9c2f911-ffcb-40c6-aeee-8c4d43811576
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- 849b0b42-f465-452b-813c-477d6398e082@{ shape: subproc, label: "*Solution Component*
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- **Set up clinical trial**"}
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- f37f3735-28a1-4e03-9ff5-3fe2f137f661-->|"Initiator"|849b0b42-f465-452b-813c-477d6398e082
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- a5d4d638-6836-47e5-99d0-fdcde637e13f@{ shape: lin-cyl, label: "*Solution Component*
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- **Weekly Measurements Data Lake Folder**"}
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- 7f5dca65-50b4-4103-9ac7-3a406a09047a-->|"Solution Linking Wire"|a5d4d638-6836-47e5-99d0-fdcde637e13f
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- 0bf2547c-937c-41b6-814f-6284849271a1@{ shape: odd, label: "*Solution Component*
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- **Treatment Assessment Report Validation and Delivery**"}
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- 72a86eec-9734-4bc0-babb-4fec0aa7c9ff-->|"Solution Linking Wire"|0bf2547c-937c-41b6-814f-6284849271a1
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- f6bc847b-868d-43cc-b767-41f5fe3e47d1@{ shape: trap-t, label: "*Solution Actor Role*
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- **Clinical Trial Sponsor**"}
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- f6bc847b-868d-43cc-b767-41f5fe3e47d1-->|"Reviewer"|0bf2547c-937c-41b6-814f-6284849271a1
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- a5d4d638-6836-47e5-99d0-fdcde637e13f-->|"Solution Linking Wire"|26c07ca4-3b8e-484b-812b-36c1ace4b275
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- fb32bef2-e79f-4893-b500-2e547f24d482@{ shape: subproc, label: "*Solution Component*
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- **Set up Data Lake Folder**"}
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- b0290339-c96c-4b05-904f-12fc98e54e14-->|"Initiator"|fb32bef2-e79f-4893-b500-2e547f24d482
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- 1c150d6e-30cf-481c-9afb-3b06c9c9e78f@{ shape: lin-cyl, label: "*Solution Component*
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- **Hospital Landing Area Folder**"}
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- ee2bb773-e630-4cf9-bdf1-7c2dd64fe4ec-->|"Solution Linking Wire"|1c150d6e-30cf-481c-9afb-3b06c9c9e78f
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- 1c150d6e-30cf-481c-9afb-3b06c9c9e78f-->|"Solution Linking Wire"|07705e15-efff-4f80-8992-f04ac85e0ef1
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- 11c7c850-c67c-41cc-9423-d74db47cbf3a@{ shape: subproc, label: "*Solution Component*
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- **Nominate Hospital**"}
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- f37f3735-28a1-4e03-9ff5-3fe2f137f661-->|"Initiator"|11c7c850-c67c-41cc-9423-d74db47cbf3a
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- end
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- </div>
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- </div>
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- </div>
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-
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- <script>
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- document.addEventListener("DOMContentLoaded", function() {
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- // Initialize Mermaid.js
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- console.log("Initializing Mermaid...");
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- mermaid.initialize({ startOnLoad: true });
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-
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- const container = document.querySelector('.pan-zoom-container');
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- const content = document.querySelector('.pan-zoom-content');
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- let rect; // Bounding box of the rendered diagram
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- let scale = 1; // Current zoom level
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- let panX = 0; // Pan offset in X direction
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- let panY = 0; // Pan offset in Y direction
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- let isDragging = false;
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- let startX, startY;
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-
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- // Helper: Apply transformations
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- const applyTransform = () => {
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- content.style.transform = `translate(${panX}px, ${panY}px) scale(${scale})`;
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- };
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-
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- // Helper: Center the diagram and fit it to the container
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- const centerAndFitDiagram = () => {
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- rect = content.getBoundingClientRect();
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- const containerRect = container.getBoundingClientRect();
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-
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- // Calculate the required scale to fit the diagram
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- scale = Math.min(
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- containerRect.width / rect.width,
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- containerRect.height / rect.height
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- );
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-
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- // Adjust pan to center the diagram
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- panX = (containerRect.width - rect.width * scale) / 2;
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- panY = (containerRect.height - rect.height * scale) / 2;
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-
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- applyTransform();
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- console.log("Diagram centered and fitted to container.");
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- };
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-
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- // Add pan/zoom functionality
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- const zoomCenteredOnDiagram = (event, deltaZoom) => {
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- rect = content.getBoundingClientRect();
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- const containerRect = container.getBoundingClientRect();
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-
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- // Center of the diagram
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- const diagramCenterX = rect.left + rect.width / 2;
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- const diagramCenterY = rect.top + rect.height / 2;
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-
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- const zoomX = (diagramCenterX - containerRect.left) * deltaZoom;
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- const zoomY = (diagramCenterY - containerRect.top) * deltaZoom;
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-
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- panX -= zoomX;
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- panY -= zoomY;
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- };
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-
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- container.addEventListener('wheel', function(event) {
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- event.preventDefault();
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- const zoomSpeed = 0.1;
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- const previousScale = scale;
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-
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- // Zoom in or out
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- if (event.deltaY < 0) {
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- scale = Math.min(scale + zoomSpeed, 4); // Limit zoom-in
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- } else {
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- scale = Math.max(scale - zoomSpeed, 0.5); // Limit zoom-out
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- }
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-
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- // Calculate deltaZoom and adjust pan
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- const deltaZoom = scale / previousScale - 1;
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- zoomCenteredOnDiagram(event, deltaZoom);
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-
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- applyTransform();
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- });
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-
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- container.addEventListener('mousedown', function(event) {
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- isDragging = true;
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- startX = event.clientX - panX;
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- startY = event.clientY - panY;
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- container.style.cursor = "grabbing";
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- });
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-
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- container.addEventListener('mousemove', function(event) {
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- if (!isDragging) return;
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-
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- panX = event.clientX - startX;
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- panY = event.clientY - startY;
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-
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- applyTransform();
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- });
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-
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- container.addEventListener('mouseup', function() {
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- isDragging = false;
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- container.style.cursor = "grab";
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- });
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-
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- container.addEventListener('mouseleave', function() {
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- isDragging = false;
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- container.style.cursor = "grab";
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- });
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-
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- // Ensure Mermaid renders the diagram, then fit and center it
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- setTimeout(centerAndFitDiagram, 100); // Delay to ensure Mermaid.js rendering is complete
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- });
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- </script>
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- </body>
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- </html>