pybiolib 0.2.951__py3-none-any.whl → 1.2.1890__py3-none-any.whl

biolib/validators/validator_utils.py

@@ -1,103 +0,0 @@
-from enum import Enum
-import re
-
-
-def validate_hostname_and_return_error_message(hostname):
-    if '/' in hostname or '\\' in hostname:
-        return 'The hostname can not contain slashes. Please only use the domain'
-
-    if re.findall(r'[\s]', hostname):
-        return 'The hostname can not contain whitespace'
-
-    if hostname.split('.')[-1].isdigit():
-        return 'The hostname can not be an IP address'
-
-    # Using 'in' to catch subdomains as well i.e. 'account.biolib.com'
-    if 'biolib.com' in hostname:
-        return 'The biolib.com domain can not be used as a remote host'
-
-
-stdout_render_types = [
-    ('text', 'Text'),
-    ('markdown', 'Markdown'),
-]
-
-
-class ChoicesEnum(Enum):
-    """
-    Class to be inherited from when using enums with the choice option in CharFields
-    """
-    @classmethod
-    def choices(cls):
-        return tuple((i.value, i.name) for i in cls)
-
-    @classmethod
-    def values(cls):
-        return [i.value for i in cls]
-
-
-class AllowedYAMLEnvironments(ChoicesEnum):
-    LOCAL_DOCKER = 'local-docker'
-    DOCKERHUB = 'dockerhub'
-    BIOLIB_APP = 'biolib'
-
-
-def normalize(string):
-    return string.replace('-', '_').lower()
-
-
-custom_executors = {
-    'python3': {
-        'latest': '1.0.0',
-        'versions': [
-            '1.0.0'
-        ],
-    },
-    'onnx': {
-        'latest': '1.0.0',
-        'versions': [
-            '1.0.0'
-        ],
-    },
-    'r': {
-        'latest': '1.0.0',
-        'versions': [
-            '1.0.0'
-        ],
-    },
-    'rust': {
-        'latest': '1.0.0',
-        'versions': [
-            '1.0.0'
-        ],
-    },
-    'tensorflow': {
-        'latest': '1.0.0',
-        'versions': [
-            '1.0.0'
-        ],
-    },
-    'tflite': {
-        'latest': '1.0.0',
-        'versions': [
-            '1.0.0'
-        ],
-    },
-    'emscripten': {
-        'latest': '1.0.0',
-        'versions': [
-            '1.0.0'
-        ],
-    }
-}
-
-old_to_new_executors_map = {
-    'bl-python3': 'python3',
-    'bl-onnx': 'onnx',
-    'bl-rust': 'rust',
-    'bl-r': 'r',
-    'bl-tensorflow': 'tensorflow',
-    'bl-emscripten': 'emscripten',
-    'bl-tflite': 'tflite'
-}
-

pybiolib-0.2.951.dist-info/LICENSE

@@ -1,21 +0,0 @@
-MIT License
-
-Copyright (c) 2020 BioLib Inc
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.

pybiolib-0.2.951.dist-info/METADATA

@@ -1,61 +0,0 @@
-Metadata-Version: 2.1
-Name: pybiolib
-Version: 0.2.951
-Summary: BioLib Python Client
-Home-page: https://github.com/biolib
-License: MIT
-Keywords: biolib
-Author: biolib
-Author-email: hello@biolib.com
-Requires-Python: >=3.6,<4.0
-Classifier: License :: OSI Approved :: MIT License
-Classifier: Operating System :: OS Independent
-Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.10
-Classifier: Programming Language :: Python :: 3.6
-Classifier: Programming Language :: Python :: 3.7
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
-Requires-Dist: aenum (>=2.2.3,<3.0.0)
-Requires-Dist: appdirs (>=1.4.3,<2.0.0)
-Requires-Dist: cbor2 (==5.2.0)
-Requires-Dist: certifi (>=2019.11.28)
-Requires-Dist: cose (==0.9.dev2)
-Requires-Dist: cryptography (>=3.1)
-Requires-Dist: docker (==4.4.1)
-Requires-Dist: flask (==2.0.1)
-Requires-Dist: flask-cors (==3.0.10)
-Requires-Dist: gunicorn (==20.1.0)
-Requires-Dist: importlib-metadata (>=1.6.1)
-Requires-Dist: nest_asyncio (>=1.4.0)
-Requires-Dist: ordered_set (>=4.0.1,<5.0.0)
-Requires-Dist: pyOpenSSL (==19.1.0)
-Requires-Dist: pycryptodome (==3.9.9)
-Requires-Dist: pyee (>=7.0.1,<8.0.0)
-Requires-Dist: pyyaml (>=5.3.1)
-Requires-Dist: requests (==2.24.0)
-Requires-Dist: termcolor (==1.1.0)
-Requires-Dist: tqdm (>=4.42.1,<5.0.0)
-Requires-Dist: typing_extensions (==3.10.0); python_version < "3.8"
-Requires-Dist: typing_inspect (>=0.5.0,<0.6.0); python_version < "3.8"
-Requires-Dist: websockets (>=8.0)
-Description-Content-Type: text/markdown
-
-# PyBioLib
-
-PyBioLib is a Python package for running BioLib applications from Python scripts, and the command line.
-
-### Python Example
-```python
-# pip3 install pybiolib
-import biolib
-samtools = biolib.load('samtools/samtools')
-print(samtools.cli(args='--help'))
-```
-
-### Command Line Example
-```bash
-pip3 install pybiolib
-biolib run samtools/samtools --help
-```
-

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@@ -1,3 +0,0 @@
-[console_scripts]
-biolib=biolib:call_cli
-