pybiolib 0.2.951__py3-none-any.whl → 1.2.1890__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (262) hide show
  1. biolib/__init__.py +357 -11
  2. biolib/_data_record/data_record.py +380 -0
  3. biolib/_index/__init__.py +0 -0
  4. biolib/_index/index.py +55 -0
  5. biolib/_index/query_result.py +103 -0
  6. biolib/_internal/__init__.py +0 -0
  7. biolib/_internal/add_copilot_prompts.py +58 -0
  8. biolib/_internal/add_gui_files.py +81 -0
  9. biolib/_internal/data_record/__init__.py +1 -0
  10. biolib/_internal/data_record/data_record.py +85 -0
  11. biolib/_internal/data_record/push_data.py +116 -0
  12. biolib/_internal/data_record/remote_storage_endpoint.py +43 -0
  13. biolib/_internal/errors.py +5 -0
  14. biolib/_internal/file_utils.py +125 -0
  15. biolib/_internal/fuse_mount/__init__.py +1 -0
  16. biolib/_internal/fuse_mount/experiment_fuse_mount.py +209 -0
  17. biolib/_internal/http_client.py +159 -0
  18. biolib/_internal/lfs/__init__.py +1 -0
  19. biolib/_internal/lfs/cache.py +51 -0
  20. biolib/_internal/libs/__init__.py +1 -0
  21. biolib/_internal/libs/fusepy/__init__.py +1257 -0
  22. biolib/_internal/push_application.py +488 -0
  23. biolib/_internal/runtime.py +22 -0
  24. biolib/_internal/string_utils.py +13 -0
  25. biolib/_internal/templates/__init__.py +1 -0
  26. biolib/_internal/templates/copilot_template/.github/instructions/general-app-knowledge.instructions.md +10 -0
  27. biolib/_internal/templates/copilot_template/.github/instructions/style-general.instructions.md +20 -0
  28. biolib/_internal/templates/copilot_template/.github/instructions/style-python.instructions.md +16 -0
  29. biolib/_internal/templates/copilot_template/.github/instructions/style-react-ts.instructions.md +47 -0
  30. biolib/_internal/templates/copilot_template/.github/prompts/biolib_app_inputs.prompt.md +11 -0
  31. biolib/_internal/templates/copilot_template/.github/prompts/biolib_onboard_repo.prompt.md +19 -0
  32. biolib/_internal/templates/copilot_template/.github/prompts/biolib_run_apps.prompt.md +12 -0
  33. biolib/_internal/templates/dashboard_template/.biolib/config.yml +5 -0
  34. biolib/_internal/templates/github_workflow_template/.github/workflows/biolib.yml +21 -0
  35. biolib/_internal/templates/gitignore_template/.gitignore +10 -0
  36. biolib/_internal/templates/gui_template/.yarnrc.yml +1 -0
  37. biolib/_internal/templates/gui_template/App.tsx +53 -0
  38. biolib/_internal/templates/gui_template/Dockerfile +27 -0
  39. biolib/_internal/templates/gui_template/biolib-sdk.ts +82 -0
  40. biolib/_internal/templates/gui_template/dev-data/output.json +7 -0
  41. biolib/_internal/templates/gui_template/index.css +5 -0
  42. biolib/_internal/templates/gui_template/index.html +13 -0
  43. biolib/_internal/templates/gui_template/index.tsx +10 -0
  44. biolib/_internal/templates/gui_template/package.json +27 -0
  45. biolib/_internal/templates/gui_template/tsconfig.json +24 -0
  46. biolib/_internal/templates/gui_template/vite-plugin-dev-data.ts +50 -0
  47. biolib/_internal/templates/gui_template/vite.config.mts +10 -0
  48. biolib/_internal/templates/init_template/.biolib/config.yml +19 -0
  49. biolib/_internal/templates/init_template/Dockerfile +14 -0
  50. biolib/_internal/templates/init_template/requirements.txt +1 -0
  51. biolib/_internal/templates/init_template/run.py +12 -0
  52. biolib/_internal/templates/init_template/run.sh +4 -0
  53. biolib/_internal/templates/templates.py +25 -0
  54. biolib/_internal/tree_utils.py +106 -0
  55. biolib/_internal/utils/__init__.py +65 -0
  56. biolib/_internal/utils/auth.py +46 -0
  57. biolib/_internal/utils/job_url.py +33 -0
  58. biolib/_internal/utils/multinode.py +263 -0
  59. biolib/_runtime/runtime.py +157 -0
  60. biolib/_session/session.py +44 -0
  61. biolib/_shared/__init__.py +0 -0
  62. biolib/_shared/types/__init__.py +74 -0
  63. biolib/_shared/types/account.py +12 -0
  64. biolib/_shared/types/account_member.py +8 -0
  65. biolib/_shared/types/app.py +9 -0
  66. biolib/_shared/types/data_record.py +40 -0
  67. biolib/_shared/types/experiment.py +32 -0
  68. biolib/_shared/types/file_node.py +17 -0
  69. biolib/_shared/types/push.py +6 -0
  70. biolib/_shared/types/resource.py +37 -0
  71. biolib/_shared/types/resource_deploy_key.py +11 -0
  72. biolib/_shared/types/resource_permission.py +14 -0
  73. biolib/_shared/types/resource_version.py +19 -0
  74. biolib/_shared/types/result.py +14 -0
  75. biolib/_shared/types/typing.py +10 -0
  76. biolib/_shared/types/user.py +19 -0
  77. biolib/_shared/utils/__init__.py +7 -0
  78. biolib/_shared/utils/resource_uri.py +75 -0
  79. biolib/api/__init__.py +6 -0
  80. biolib/api/client.py +168 -0
  81. biolib/app/app.py +252 -49
  82. biolib/app/search_apps.py +45 -0
  83. biolib/biolib_api_client/api_client.py +126 -31
  84. biolib/biolib_api_client/app_types.py +24 -4
  85. biolib/biolib_api_client/auth.py +31 -8
  86. biolib/biolib_api_client/biolib_app_api.py +147 -52
  87. biolib/biolib_api_client/biolib_job_api.py +161 -141
  88. biolib/biolib_api_client/job_types.py +21 -5
  89. biolib/biolib_api_client/lfs_types.py +7 -23
  90. biolib/biolib_api_client/user_state.py +56 -0
  91. biolib/biolib_binary_format/__init__.py +1 -4
  92. biolib/biolib_binary_format/file_in_container.py +105 -0
  93. biolib/biolib_binary_format/module_input.py +24 -7
  94. biolib/biolib_binary_format/module_output_v2.py +149 -0
  95. biolib/biolib_binary_format/remote_endpoints.py +34 -0
  96. biolib/biolib_binary_format/remote_stream_seeker.py +59 -0
  97. biolib/biolib_binary_format/saved_job.py +3 -2
  98. biolib/biolib_binary_format/{attestation_document.py → stdout_and_stderr.py} +8 -8
  99. biolib/biolib_binary_format/system_status_update.py +3 -2
  100. biolib/biolib_binary_format/utils.py +175 -0
  101. biolib/biolib_docker_client/__init__.py +11 -2
  102. biolib/biolib_errors.py +36 -0
  103. biolib/biolib_logging.py +27 -10
  104. biolib/cli/__init__.py +38 -0
  105. biolib/cli/auth.py +46 -0
  106. biolib/cli/data_record.py +164 -0
  107. biolib/cli/index.py +32 -0
  108. biolib/cli/init.py +421 -0
  109. biolib/cli/lfs.py +101 -0
  110. biolib/cli/push.py +50 -0
  111. biolib/cli/run.py +63 -0
  112. biolib/cli/runtime.py +14 -0
  113. biolib/cli/sdk.py +16 -0
  114. biolib/cli/start.py +56 -0
  115. biolib/compute_node/cloud_utils/cloud_utils.py +110 -161
  116. biolib/compute_node/job_worker/cache_state.py +66 -88
  117. biolib/compute_node/job_worker/cache_types.py +1 -6
  118. biolib/compute_node/job_worker/docker_image_cache.py +112 -37
  119. biolib/compute_node/job_worker/executors/__init__.py +0 -3
  120. biolib/compute_node/job_worker/executors/docker_executor.py +532 -199
  121. biolib/compute_node/job_worker/executors/docker_types.py +9 -1
  122. biolib/compute_node/job_worker/executors/types.py +19 -9
  123. biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +30 -0
  124. biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +3 -5
  125. biolib/compute_node/job_worker/job_storage.py +108 -0
  126. biolib/compute_node/job_worker/job_worker.py +397 -212
  127. biolib/compute_node/job_worker/large_file_system.py +87 -38
  128. biolib/compute_node/job_worker/network_alloc.py +99 -0
  129. biolib/compute_node/job_worker/network_buffer.py +240 -0
  130. biolib/compute_node/job_worker/utilization_reporter_thread.py +197 -0
  131. biolib/compute_node/job_worker/utils.py +9 -24
  132. biolib/compute_node/remote_host_proxy.py +400 -98
  133. biolib/compute_node/utils.py +31 -9
  134. biolib/compute_node/webserver/compute_node_results_proxy.py +189 -0
  135. biolib/compute_node/webserver/proxy_utils.py +28 -0
  136. biolib/compute_node/webserver/webserver.py +130 -44
  137. biolib/compute_node/webserver/webserver_types.py +2 -6
  138. biolib/compute_node/webserver/webserver_utils.py +77 -12
  139. biolib/compute_node/webserver/worker_thread.py +183 -42
  140. biolib/experiments/__init__.py +0 -0
  141. biolib/experiments/experiment.py +356 -0
  142. biolib/jobs/__init__.py +1 -0
  143. biolib/jobs/job.py +741 -0
  144. biolib/jobs/job_result.py +185 -0
  145. biolib/jobs/types.py +50 -0
  146. biolib/py.typed +0 -0
  147. biolib/runtime/__init__.py +14 -0
  148. biolib/sdk/__init__.py +91 -0
  149. biolib/tables.py +34 -0
  150. biolib/typing_utils.py +2 -7
  151. biolib/user/__init__.py +1 -0
  152. biolib/user/sign_in.py +54 -0
  153. biolib/utils/__init__.py +162 -0
  154. biolib/utils/cache_state.py +94 -0
  155. biolib/utils/multipart_uploader.py +194 -0
  156. biolib/utils/seq_util.py +150 -0
  157. biolib/utils/zip/remote_zip.py +640 -0
  158. pybiolib-1.2.1890.dist-info/METADATA +41 -0
  159. pybiolib-1.2.1890.dist-info/RECORD +177 -0
  160. {pybiolib-0.2.951.dist-info → pybiolib-1.2.1890.dist-info}/WHEEL +1 -1
  161. pybiolib-1.2.1890.dist-info/entry_points.txt +2 -0
  162. README.md +0 -17
  163. biolib/app/app_result.py +0 -68
  164. biolib/app/utils.py +0 -62
  165. biolib/biolib-js/0-biolib.worker.js +0 -1
  166. biolib/biolib-js/1-biolib.worker.js +0 -1
  167. biolib/biolib-js/2-biolib.worker.js +0 -1
  168. biolib/biolib-js/3-biolib.worker.js +0 -1
  169. biolib/biolib-js/4-biolib.worker.js +0 -1
  170. biolib/biolib-js/5-biolib.worker.js +0 -1
  171. biolib/biolib-js/6-biolib.worker.js +0 -1
  172. biolib/biolib-js/index.html +0 -10
  173. biolib/biolib-js/main-biolib.js +0 -1
  174. biolib/biolib_api_client/biolib_account_api.py +0 -21
  175. biolib/biolib_api_client/biolib_large_file_system_api.py +0 -108
  176. biolib/biolib_binary_format/aes_encrypted_package.py +0 -42
  177. biolib/biolib_binary_format/module_output.py +0 -58
  178. biolib/biolib_binary_format/rsa_encrypted_aes_package.py +0 -57
  179. biolib/biolib_push.py +0 -114
  180. biolib/cli.py +0 -203
  181. biolib/cli_utils.py +0 -273
  182. biolib/compute_node/cloud_utils/enclave_parent_types.py +0 -7
  183. biolib/compute_node/enclave/__init__.py +0 -2
  184. biolib/compute_node/enclave/enclave_remote_hosts.py +0 -53
  185. biolib/compute_node/enclave/nitro_secure_module_utils.py +0 -64
  186. biolib/compute_node/job_worker/executors/base_executor.py +0 -18
  187. biolib/compute_node/job_worker/executors/pyppeteer_executor.py +0 -173
  188. biolib/compute_node/job_worker/executors/remote/__init__.py +0 -1
  189. biolib/compute_node/job_worker/executors/remote/nitro_enclave_utils.py +0 -81
  190. biolib/compute_node/job_worker/executors/remote/remote_executor.py +0 -51
  191. biolib/lfs.py +0 -196
  192. biolib/pyppeteer/.circleci/config.yml +0 -100
  193. biolib/pyppeteer/.coveragerc +0 -3
  194. biolib/pyppeteer/.gitignore +0 -89
  195. biolib/pyppeteer/.pre-commit-config.yaml +0 -28
  196. biolib/pyppeteer/CHANGES.md +0 -253
  197. biolib/pyppeteer/CONTRIBUTING.md +0 -26
  198. biolib/pyppeteer/LICENSE +0 -12
  199. biolib/pyppeteer/README.md +0 -137
  200. biolib/pyppeteer/docs/Makefile +0 -177
  201. biolib/pyppeteer/docs/_static/custom.css +0 -28
  202. biolib/pyppeteer/docs/_templates/layout.html +0 -10
  203. biolib/pyppeteer/docs/changes.md +0 -1
  204. biolib/pyppeteer/docs/conf.py +0 -299
  205. biolib/pyppeteer/docs/index.md +0 -21
  206. biolib/pyppeteer/docs/make.bat +0 -242
  207. biolib/pyppeteer/docs/reference.md +0 -211
  208. biolib/pyppeteer/docs/server.py +0 -60
  209. biolib/pyppeteer/poetry.lock +0 -1699
  210. biolib/pyppeteer/pyppeteer/__init__.py +0 -135
  211. biolib/pyppeteer/pyppeteer/accessibility.py +0 -286
  212. biolib/pyppeteer/pyppeteer/browser.py +0 -401
  213. biolib/pyppeteer/pyppeteer/browser_fetcher.py +0 -194
  214. biolib/pyppeteer/pyppeteer/command.py +0 -22
  215. biolib/pyppeteer/pyppeteer/connection/__init__.py +0 -242
  216. biolib/pyppeteer/pyppeteer/connection/cdpsession.py +0 -101
  217. biolib/pyppeteer/pyppeteer/coverage.py +0 -346
  218. biolib/pyppeteer/pyppeteer/device_descriptors.py +0 -787
  219. biolib/pyppeteer/pyppeteer/dialog.py +0 -79
  220. biolib/pyppeteer/pyppeteer/domworld.py +0 -597
  221. biolib/pyppeteer/pyppeteer/emulation_manager.py +0 -53
  222. biolib/pyppeteer/pyppeteer/errors.py +0 -48
  223. biolib/pyppeteer/pyppeteer/events.py +0 -63
  224. biolib/pyppeteer/pyppeteer/execution_context.py +0 -156
  225. biolib/pyppeteer/pyppeteer/frame/__init__.py +0 -299
  226. biolib/pyppeteer/pyppeteer/frame/frame_manager.py +0 -306
  227. biolib/pyppeteer/pyppeteer/helpers.py +0 -245
  228. biolib/pyppeteer/pyppeteer/input.py +0 -371
  229. biolib/pyppeteer/pyppeteer/jshandle.py +0 -598
  230. biolib/pyppeteer/pyppeteer/launcher.py +0 -683
  231. biolib/pyppeteer/pyppeteer/lifecycle_watcher.py +0 -169
  232. biolib/pyppeteer/pyppeteer/models/__init__.py +0 -103
  233. biolib/pyppeteer/pyppeteer/models/_protocol.py +0 -12460
  234. biolib/pyppeteer/pyppeteer/multimap.py +0 -82
  235. biolib/pyppeteer/pyppeteer/network_manager.py +0 -678
  236. biolib/pyppeteer/pyppeteer/options.py +0 -8
  237. biolib/pyppeteer/pyppeteer/page.py +0 -1728
  238. biolib/pyppeteer/pyppeteer/pipe_transport.py +0 -59
  239. biolib/pyppeteer/pyppeteer/target.py +0 -147
  240. biolib/pyppeteer/pyppeteer/task_queue.py +0 -24
  241. biolib/pyppeteer/pyppeteer/timeout_settings.py +0 -36
  242. biolib/pyppeteer/pyppeteer/tracing.py +0 -93
  243. biolib/pyppeteer/pyppeteer/us_keyboard_layout.py +0 -305
  244. biolib/pyppeteer/pyppeteer/util.py +0 -18
  245. biolib/pyppeteer/pyppeteer/websocket_transport.py +0 -47
  246. biolib/pyppeteer/pyppeteer/worker.py +0 -101
  247. biolib/pyppeteer/pyproject.toml +0 -97
  248. biolib/pyppeteer/spell.txt +0 -137
  249. biolib/pyppeteer/tox.ini +0 -72
  250. biolib/pyppeteer/utils/generate_protocol_types.py +0 -603
  251. biolib/start_cli.py +0 -7
  252. biolib/utils.py +0 -47
  253. biolib/validators/validate_app_version.py +0 -183
  254. biolib/validators/validate_argument.py +0 -134
  255. biolib/validators/validate_module.py +0 -323
  256. biolib/validators/validate_zip_file.py +0 -40
  257. biolib/validators/validator_utils.py +0 -103
  258. pybiolib-0.2.951.dist-info/LICENSE +0 -21
  259. pybiolib-0.2.951.dist-info/METADATA +0 -61
  260. pybiolib-0.2.951.dist-info/RECORD +0 -153
  261. pybiolib-0.2.951.dist-info/entry_points.txt +0 -3
  262. /LICENSE → /pybiolib-1.2.1890.dist-info/licenses/LICENSE +0 -0
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- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
113
- version = "2.8.0"
114
-
115
- [package.dependencies]
116
- pytz = ">=2015.7"
117
-
118
- [[package]]
119
- category = "dev"
120
- description = "An easy safelist-based HTML-sanitizing tool."
121
- name = "bleach"
122
- optional = false
123
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
124
- version = "3.1.5"
125
-
126
- [package.dependencies]
127
- packaging = "*"
128
- six = ">=1.9.0"
129
- webencodings = "*"
130
-
131
- [[package]]
132
- category = "main"
133
- description = "Python package for providing Mozilla's CA Bundle."
134
- name = "certifi"
135
- optional = false
136
- python-versions = "*"
137
- version = "2020.4.5.1"
138
-
139
- [[package]]
140
- category = "dev"
141
- description = "Validate configuration and produce human readable error messages."
142
- name = "cfgv"
143
- optional = false
144
- python-versions = ">=3.6.1"
145
- version = "3.1.0"
146
-
147
- [[package]]
148
- category = "dev"
149
- description = "Universal encoding detector for Python 2 and 3"
150
- name = "chardet"
151
- optional = false
152
- python-versions = "*"
153
- version = "3.0.4"
154
-
155
- [[package]]
156
- category = "dev"
157
- description = "Extended pickling support for Python objects"
158
- name = "cloudpickle"
159
- optional = false
160
- python-versions = ">=3.5"
161
- version = "1.4.1"
162
-
163
- [[package]]
164
- category = "dev"
165
- description = "Cross-platform colored terminal text."
166
- marker = "sys_platform == \"win32\" or platform_system == \"Windows\""
167
- name = "colorama"
168
- optional = false
169
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
170
- version = "0.4.3"
171
-
172
- [[package]]
173
- category = "dev"
174
- description = "Code coverage measurement for Python"
175
- name = "coverage"
176
- optional = false
177
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
178
- version = "5.1"
179
-
180
- [package.extras]
181
- toml = ["toml"]
182
-
183
- [[package]]
184
- category = "dev"
185
- description = "Decorators for Humans"
186
- name = "decorator"
187
- optional = false
188
- python-versions = ">=2.6, !=3.0.*, !=3.1.*"
189
- version = "4.4.2"
190
-
191
- [[package]]
192
- category = "dev"
193
- description = "Repackaging of Google's Diff Match and Patch libraries. Offers robust algorithms to perform the operations required for synchronizing plain text."
194
- name = "diff-match-patch"
195
- optional = false
196
- python-versions = "*"
197
- version = "20181111"
198
-
199
- [[package]]
200
- category = "dev"
201
- description = "Distribution utilities"
202
- name = "distlib"
203
- optional = false
204
- python-versions = "*"
205
- version = "0.3.0"
206
-
207
- [[package]]
208
- category = "dev"
209
- description = "Docutils -- Python Documentation Utilities"
210
- name = "docutils"
211
- optional = false
212
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
213
- version = "0.16"
214
-
215
- [[package]]
216
- category = "dev"
217
- description = "doit - Automation Tool"
218
- name = "doit"
219
- optional = false
220
- python-versions = ">=3.4"
221
- version = "0.32.0"
222
-
223
- [package.dependencies]
224
- cloudpickle = "*"
225
- macfsevents = "*"
226
- pyinotify = "*"
227
-
228
- [[package]]
229
- category = "dev"
230
- description = "execnet: rapid multi-Python deployment"
231
- name = "execnet"
232
- optional = false
233
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
234
- version = "1.7.1"
235
-
236
- [package.dependencies]
237
- apipkg = ">=1.4"
238
-
239
- [package.extras]
240
- testing = ["pre-commit"]
241
-
242
- [[package]]
243
- category = "dev"
244
- description = "A platform independent file lock."
245
- name = "filelock"
246
- optional = false
247
- python-versions = "*"
248
- version = "3.0.12"
249
-
250
- [[package]]
251
- category = "dev"
252
- description = "the modular source code checker: pep8 pyflakes and co"
253
- name = "flake8"
254
- optional = false
255
- python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
256
- version = "3.8.2"
257
-
258
- [package.dependencies]
259
- mccabe = ">=0.6.0,<0.7.0"
260
- pycodestyle = ">=2.6.0a1,<2.7.0"
261
- pyflakes = ">=2.2.0,<2.3.0"
262
-
263
- [package.dependencies.importlib-metadata]
264
- python = "<3.8"
265
- version = "*"
266
-
267
- [[package]]
268
- category = "dev"
269
- description = "File identification library for Python"
270
- name = "identify"
271
- optional = false
272
- python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
273
- version = "1.4.17"
274
-
275
- [package.extras]
276
- license = ["editdistance"]
277
-
278
- [[package]]
279
- category = "dev"
280
- description = "Internationalized Domain Names in Applications (IDNA)"
281
- name = "idna"
282
- optional = false
283
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
284
- version = "2.9"
285
-
286
- [[package]]
287
- category = "dev"
288
- description = "Patch ssl.match_hostname for Unicode(idna) domains support"
289
- marker = "python_version < \"3.7\""
290
- name = "idna-ssl"
291
- optional = false
292
- python-versions = "*"
293
- version = "1.1.0"
294
-
295
- [package.dependencies]
296
- idna = ">=2.0"
297
-
298
- [[package]]
299
- category = "dev"
300
- description = "Getting image size from png/jpeg/jpeg2000/gif file"
301
- name = "imagesize"
302
- optional = false
303
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
304
- version = "1.2.0"
305
-
306
- [[package]]
307
- category = "dev"
308
- description = "Read metadata from Python packages"
309
- marker = "python_version < \"3.8\""
310
- name = "importlib-metadata"
311
- optional = false
312
- python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
313
- version = "1.6.0"
314
-
315
- [package.dependencies]
316
- zipp = ">=0.5"
317
-
318
- [package.extras]
319
- docs = ["sphinx", "rst.linker"]
320
- testing = ["packaging", "importlib-resources"]
321
-
322
- [[package]]
323
- category = "dev"
324
- description = "Read resources from Python packages"
325
- marker = "python_version < \"3.7\""
326
- name = "importlib-resources"
327
- optional = false
328
- python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
329
- version = "1.5.0"
330
-
331
- [package.dependencies]
332
- [package.dependencies.importlib-metadata]
333
- python = "<3.8"
334
- version = "*"
335
-
336
- [package.dependencies.zipp]
337
- python = "<3.8"
338
- version = ">=0.4"
339
-
340
- [package.extras]
341
- docs = ["sphinx", "rst.linker", "jaraco.packaging"]
342
-
343
- [[package]]
344
- category = "dev"
345
- description = "A Python utility / library to sort Python imports."
346
- name = "isort"
347
- optional = false
348
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
349
- version = "4.3.21"
350
-
351
- [package.extras]
352
- pipfile = ["pipreqs", "requirementslib"]
353
- pyproject = ["toml"]
354
- requirements = ["pipreqs", "pip-api"]
355
- xdg_home = ["appdirs (>=1.4.0)"]
356
-
357
- [[package]]
358
- category = "dev"
359
- description = "A very fast and expressive template engine."
360
- name = "jinja2"
361
- optional = false
362
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
363
- version = "2.11.2"
364
-
365
- [package.dependencies]
366
- MarkupSafe = ">=0.23"
367
-
368
- [package.extras]
369
- i18n = ["Babel (>=0.8)"]
370
-
371
- [[package]]
372
- category = "dev"
373
- description = "A fast and thorough lazy object proxy."
374
- name = "lazy-object-proxy"
375
- optional = false
376
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
377
- version = "1.4.3"
378
-
379
- [[package]]
380
- category = "dev"
381
- description = "Python LiveReload is an awesome tool for web developers"
382
- name = "livereload"
383
- optional = false
384
- python-versions = "*"
385
- version = "2.6.1"
386
-
387
- [package.dependencies]
388
- six = "*"
389
- tornado = "*"
390
-
391
- [[package]]
392
- category = "dev"
393
- description = "Markdown and reStructuredText in a single file."
394
- name = "m2r"
395
- optional = false
396
- python-versions = "*"
397
- version = "0.2.1"
398
-
399
- [package.dependencies]
400
- docutils = "*"
401
- mistune = "*"
402
-
403
- [[package]]
404
- category = "dev"
405
- description = "Thread-based interface to file system observation primitives."
406
- marker = "sys_platform == \"darwin\""
407
- name = "macfsevents"
408
- optional = false
409
- python-versions = "*"
410
- version = "0.8.1"
411
-
412
- [[package]]
413
- category = "dev"
414
- description = "Safely add untrusted strings to HTML/XML markup."
415
- name = "markupsafe"
416
- optional = false
417
- python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*"
418
- version = "1.1.1"
419
-
420
- [[package]]
421
- category = "dev"
422
- description = "McCabe checker, plugin for flake8"
423
- name = "mccabe"
424
- optional = false
425
- python-versions = "*"
426
- version = "0.6.1"
427
-
428
- [[package]]
429
- category = "dev"
430
- description = "The fastest markdown parser in pure Python"
431
- name = "mistune"
432
- optional = false
433
- python-versions = "*"
434
- version = "0.8.4"
435
-
436
- [[package]]
437
- category = "dev"
438
- description = "More routines for operating on iterables, beyond itertools"
439
- name = "more-itertools"
440
- optional = false
441
- python-versions = ">=3.5"
442
- version = "8.3.0"
443
-
444
- [[package]]
445
- category = "dev"
446
- description = "multidict implementation"
447
- name = "multidict"
448
- optional = false
449
- python-versions = ">=3.5"
450
- version = "4.7.6"
451
-
452
- [[package]]
453
- category = "dev"
454
- description = "Optional static typing for Python"
455
- name = "mypy"
456
- optional = false
457
- python-versions = ">=3.5"
458
- version = "0.770"
459
-
460
- [package.dependencies]
461
- mypy-extensions = ">=0.4.3,<0.5.0"
462
- typed-ast = ">=1.4.0,<1.5.0"
463
- typing-extensions = ">=3.7.4"
464
-
465
- [package.extras]
466
- dmypy = ["psutil (>=4.0)"]
467
-
468
- [[package]]
469
- category = "main"
470
- description = "Experimental type system extensions for programs checked with the mypy typechecker."
471
- name = "mypy-extensions"
472
- optional = false
473
- python-versions = "*"
474
- version = "0.4.3"
475
-
476
- [[package]]
477
- category = "dev"
478
- description = "Python package for creating and manipulating graphs and networks"
479
- name = "networkx"
480
- optional = false
481
- python-versions = ">=3.5"
482
- version = "2.4"
483
-
484
- [package.dependencies]
485
- decorator = ">=4.3.0"
486
-
487
- [package.extras]
488
- all = ["numpy", "scipy", "pandas", "matplotlib", "pygraphviz", "pydot", "pyyaml", "gdal", "lxml", "pytest"]
489
- gdal = ["gdal"]
490
- lxml = ["lxml"]
491
- matplotlib = ["matplotlib"]
492
- numpy = ["numpy"]
493
- pandas = ["pandas"]
494
- pydot = ["pydot"]
495
- pygraphviz = ["pygraphviz"]
496
- pytest = ["pytest"]
497
- pyyaml = ["pyyaml"]
498
- scipy = ["scipy"]
499
-
500
- [[package]]
501
- category = "dev"
502
- description = "Node.js virtual environment builder"
503
- name = "nodeenv"
504
- optional = false
505
- python-versions = "*"
506
- version = "1.3.5"
507
-
508
- [[package]]
509
- category = "main"
510
- description = "A set that remembers its order, and allows looking up its items by their index in that order."
511
- name = "ordered-set"
512
- optional = false
513
- python-versions = ">=3.5"
514
- version = "4.0.1"
515
-
516
- [[package]]
517
- category = "dev"
518
- description = "Core utilities for Python packages"
519
- name = "packaging"
520
- optional = false
521
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
522
- version = "20.4"
523
-
524
- [package.dependencies]
525
- pyparsing = ">=2.0.2"
526
- six = "*"
527
-
528
- [[package]]
529
- category = "main"
530
- description = "Python Imaging Library (Fork)"
531
- name = "pillow"
532
- optional = false
533
- python-versions = ">=3.5"
534
- version = "7.1.2"
535
-
536
- [[package]]
537
- category = "dev"
538
- description = "A pixel-level image comparison library."
539
- name = "pixelmatch"
540
- optional = false
541
- python-versions = ">=3.6,<4.0"
542
- version = "0.2.1"
543
-
544
- [[package]]
545
- category = "dev"
546
- description = "plugin and hook calling mechanisms for python"
547
- name = "pluggy"
548
- optional = false
549
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
550
- version = "0.13.1"
551
-
552
- [package.dependencies]
553
- [package.dependencies.importlib-metadata]
554
- python = "<3.8"
555
- version = ">=0.12"
556
-
557
- [package.extras]
558
- dev = ["pre-commit", "tox"]
559
-
560
- [[package]]
561
- category = "dev"
562
- description = "A framework for managing and maintaining multi-language pre-commit hooks."
563
- name = "pre-commit"
564
- optional = false
565
- python-versions = ">=3.6.1"
566
- version = "2.4.0"
567
-
568
- [package.dependencies]
569
- cfgv = ">=2.0.0"
570
- identify = ">=1.0.0"
571
- nodeenv = ">=0.11.1"
572
- pyyaml = ">=5.1"
573
- toml = "*"
574
- virtualenv = ">=20.0.8"
575
-
576
- [package.dependencies.importlib-metadata]
577
- python = "<3.8"
578
- version = "*"
579
-
580
- [package.dependencies.importlib-resources]
581
- python = "<3.7"
582
- version = "*"
583
-
584
- [[package]]
585
- category = "dev"
586
- description = "library with cross-python path, ini-parsing, io, code, log facilities"
587
- name = "py"
588
- optional = false
589
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
590
- version = "1.8.1"
591
-
592
- [[package]]
593
- category = "dev"
594
- description = "Python style guide checker"
595
- name = "pycodestyle"
596
- optional = false
597
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
598
- version = "2.6.0"
599
-
600
- [[package]]
601
- category = "dev"
602
- description = "Python docstring style checker"
603
- name = "pydocstyle"
604
- optional = false
605
- python-versions = ">=3.5"
606
- version = "5.0.2"
607
-
608
- [package.dependencies]
609
- snowballstemmer = "*"
610
-
611
- [[package]]
612
- category = "main"
613
- description = "A port of node.js's EventEmitter to python."
614
- name = "pyee"
615
- optional = false
616
- python-versions = "*"
617
- version = "7.0.2"
618
-
619
- [[package]]
620
- category = "dev"
621
- description = "passive checker of Python programs"
622
- name = "pyflakes"
623
- optional = false
624
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
625
- version = "2.2.0"
626
-
627
- [[package]]
628
- category = "dev"
629
- description = "Pygments is a syntax highlighting package written in Python."
630
- name = "pygments"
631
- optional = false
632
- python-versions = ">=3.5"
633
- version = "2.6.1"
634
-
635
- [[package]]
636
- category = "dev"
637
- description = "Linux filesystem events monitoring"
638
- marker = "sys_platform == \"linux\""
639
- name = "pyinotify"
640
- optional = false
641
- python-versions = "*"
642
- version = "0.9.6"
643
-
644
- [[package]]
645
- category = "dev"
646
- description = "python code static checker"
647
- name = "pylint"
648
- optional = false
649
- python-versions = ">=3.5.*"
650
- version = "2.5.2"
651
-
652
- [package.dependencies]
653
- astroid = ">=2.4.0,<=2.5"
654
- colorama = "*"
655
- isort = ">=4.2.5,<5"
656
- mccabe = ">=0.6,<0.7"
657
- toml = ">=0.7.1"
658
-
659
- [[package]]
660
- category = "dev"
661
- description = "Python parsing module"
662
- name = "pyparsing"
663
- optional = false
664
- python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
665
- version = "2.4.7"
666
-
667
- [[package]]
668
- category = "dev"
669
- description = "pytest: simple powerful testing with Python"
670
- name = "pytest"
671
- optional = false
672
- python-versions = ">=3.5"
673
- version = "5.4.2"
674
-
675
- [package.dependencies]
676
- atomicwrites = ">=1.0"
677
- attrs = ">=17.4.0"
678
- colorama = "*"
679
- more-itertools = ">=4.0.0"
680
- packaging = "*"
681
- pluggy = ">=0.12,<1.0"
682
- py = ">=1.5.0"
683
- wcwidth = "*"
684
-
685
- [package.dependencies.importlib-metadata]
686
- python = "<3.8"
687
- version = ">=0.12"
688
-
689
- [package.extras]
690
- checkqa-mypy = ["mypy (v0.761)"]
691
- testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"]
692
-
693
- [[package]]
694
- category = "dev"
695
- description = "Pytest plugin for measuring coverage."
696
- name = "pytest-cov"
697
- optional = false
698
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
699
- version = "2.9.0"
700
-
701
- [package.dependencies]
702
- coverage = ">=4.4"
703
- pytest = ">=3.6"
704
-
705
- [package.extras]
706
- testing = ["fields", "hunter", "process-tests (2.0.2)", "six", "pytest-xdist", "virtualenv"]
707
-
708
- [[package]]
709
- category = "dev"
710
- description = "run tests in isolated forked subprocesses"
711
- name = "pytest-forked"
712
- optional = false
713
- python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
714
- version = "1.1.3"
715
-
716
- [package.dependencies]
717
- pytest = ">=3.1.0"
718
-
719
- [[package]]
720
- category = "dev"
721
- description = "py.test plugin to abort hanging tests"
722
- name = "pytest-timeout"
723
- optional = false
724
- python-versions = "*"
725
- version = "1.3.4"
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730
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