pyadps 0.2.0b0__py3-none-any.whl → 0.3.0b0__py3-none-any.whl

pyadps/pages/06_Velocity_Test.py

@@ -1,341 +0,0 @@
-import numpy as np
-import pandas as pd
-import plotly.express as px
-import plotly.graph_objects as go
-import streamlit as st
-from plotly.subplots import make_subplots
-from plotly_resampler import FigureResampler
-from streamlit.runtime.state import session_state
-from utils.profile_test import side_lobe_beam_angle
-from utils.signal_quality import default_mask
-from utils.velocity_test import (despike, flatline, magnetic_declination,
-                                 velocity_cutoff, wmm2020api, velocity_modifier)
-
-if "flead" not in st.session_state:
-    st.write(":red[Please Select Data!]")
-    st.stop()
-
-flobj = st.session_state.flead
-vlobj = st.session_state.vlead
-fdata = flobj.fleader
-vdata = vlobj.vleader
-
-
-####### Initialize Mask File ##############
-# Is this the best way?
-if st.session_state.isProfileMask or st.session_state.isQCMask:
-    st.write(":grey[Working on a saved mask file ...]")
-    if st.session_state.isVelocityMask:
-        st.write(
-            ":orange[Warning: Velocity test already completed. Reset to change settings.]"
-        )
-        reset_selectbox = st.selectbox(
-            "Choose reset option",
-            ("Profile Test", "QC Test", "Default"),
-            index=None,
-            placeholder="Reset mask to ...",
-        )
-        if reset_selectbox == "Default":
-            st.write("Default mask file selected")
-            st.session_state.maskd = st.session_state.orig_mask
-            st.session_state.dummyvelocity = st.session_state.velocity
-        elif reset_selectbox == "QC Test":
-            st.write("QC Test mask file selected")
-            st.session_state.maskd = st.session_state.qc_mask
-            st.session_state.dummyvelocity = st.session_state.velocity
-        elif reset_selectbox == "Profile Test":
-            st.session_state.maskd = st.session_state.profile_mask
-            if st.session_state.isGridSave:
-                st.session_state.dummyvelocity = st.session_state.velocity_regrid
-            else:
-                st.session_state.dummyvelocity = st.session_state.velocity
-        else:
-            st.session_state.maskd = st.session_state.velocity_mask
-            st.session_state.dummyvelocity = st.session_state.velocity
-    else:
-        if st.session_state.isProfileMask:
-            st.session_state.maskd = st.session_state.profile_mask
-        elif st.session_state.isQCMask:
-            st.session_state.maskd = st.session_state.qc_mask
-        else:
-            st.session_state.maskd = st.session_state.orig_mask
-else:
-    st.write(":grey[Creating a new mask file ...]")
-
-
-if "isCutoff" not in st.session_state:
-    st.session_state.isMagnet = False
-    st.session_state.isCutoff = False
-    st.session_state.isDespike = False
-    st.session_state.isFlatline = False
-
-if "maskd" not in st.session_state:
-    if st.session_state.isProfileMask:
-        st.session_state.maskd = np.copy(st.session_state.profile_mask)
-    elif st.session_state.isQCMask:
-        st.session_state.maskd = np.copy(st.session_state.qc_mask)
-    else:
-        st.session_state.maskd = np.copy(st.session_state.orig_mask)
-
-# If data are not regrided use the default one
-if st.session_state.isGridSave:
-    st.session_state.dummyvelocity = np.copy(st.session_state.velocity_regrid)
-else:
-    st.session_state.dummyvelocity = np.copy(st.session_state.velocity)
-
-velocity = st.session_state.dummyvelocity
-
-ensembles = st.session_state.head.ensembles
-cells = flobj.field()["Cells"]
-x = np.arange(0, ensembles, 1)
-y = np.arange(0, cells, 1)
-
-
-########### Introduction ##########
-st.header("Velocity Test", divider="orange")
-
-st.write(
-    """
-The processing in this page apply only to the velocity data.
-"""
-)
-
-############ Magnetic Declination ##############
-st.header("Magnetic Declination", divider="blue")
-st.write(
-    """
-* The magnetic declination is obtained from World Magnetic Model 2020 (WMM2020).
-The python wrapper module `wmm2020` is available from this [Link](https://github.com/space-physics/wmm2020). 
-
-* The API method utilizes the online magnetic declination service provided by the National Geophysical Data Center (NGDC)
-of the National Oceanic and Atmospheric Administration (NOAA) to calculate the magnetic declination. The service is available at this [link](https://www.ngdc.noaa.gov/geomag/calculators/magcalc.shtml#declination).
-Internet connection is necessary for this method to work.
-
-* In the manual method, the user can directly enter the magnetic declination.
-
-If the magnetic declination is reset, re-run the remaining tests again.
-"""
-)
-
-# Selecting the method to calculate magnetic declination.
-method = st.radio("Select a method", ("WMM2020", "API", "Manual"), horizontal=True)
-# method = method - 1
-st.session_state.method = method
-
-if "isMagnetButton" not in st.session_state:
-    st.session_state.isMagnetButton = False
-
-
-def toggle_btns():
-    st.session_state.isMagnetButton = not st.session_state.isMagnetButton
-
-
-with st.form(key="magnet_form"):
-    if st.session_state.method == "WMM2020":
-        st.session_state.isMagnet = False
-        lat = st.number_input("Latitude", -90.0, 90.0, 0.0, step=1.0)
-        lon = st.number_input("Longitude", 0.0, 360.0, 0.1, step=1.0, format="%.4f")
-        depth = st.number_input("Depth", 0, 1000, 0, step=1)
-        year = st.number_input("Year", 1950, 2100, 2024, 1)
-    elif  st.session_state.method == "API":
-        st.session_state.isMagnet = False
-        lat = st.number_input("Latitude", -90.0, 90.0, 0.0, step=1.0)
-        lon = st.number_input("Longitude", 0.0, 360.0, 0.1, step=1.0, format="%.4f")
-        year = st.number_input("Year", 1950, 2100, 2024, 1)
-    else:
-        st.session_state.isMagnet = False
-        mag = [[st.number_input("Declination", -180.0, 180.0, 0.0, 0.1)]]
-    
-    if st.session_state.method == "Manual":
-        button_name = "Accept"
-    else:
-        button_name = "Compute"
-
-
-    if st.form_submit_button(
-        button_name, on_click=toggle_btns, disabled=st.session_state.isMagnetButton
-    ):
-        if st.session_state.method == "WMM2020":
-            try:
-                mag = magnetic_declination(lat, lon, depth, year)
-                st.session_state.dummyvelocity = velocity_modifier(velocity, mag)
-                st.session_state.lat = lat
-                st.session_state.lon = lon
-                st.session_state.magnetic_dec_depth = depth
-                st.session_state.year = year
-                st.session_state.angle = np.trunc(mag[0][0])
-                st.session_state.isMagnet = True
-            except:
-                st.write(":red[Process failed! please use other methods: API or  Manual]")
-
-        elif  st.session_state.method == "API":
-            try:
-                mag = wmm2020api(lat, lon, year)
-                st.session_state.dummyvelocity = velocity_modifier(velocity, mag)
-                st.session_state.lat = lat
-                st.session_state.lon = lon
-                st.session_state.year = year
-                st.session_state.angle = np.trunc(mag[0][0])
-                st.session_state.isMagnet = True
-            except:
-                st.write(":red[Connection error! please check the internet or use other methods: WMM2020 or  Manual]")
-
-        else:
-            st.session_state.dummyvelocity = velocity_modifier(velocity, mag)
-            st.session_state.angle = np.trunc(mag[0][0])
-            st.session_state.isMagnet = True
-
-
-if st.session_state.isMagnet:
-    st.write(f"Magnetic declination: {st.session_state.angle}\u00b0")
-    st.write(":green[Magnetic declination correction applied to velocities]")
-
-if st.button(
-    "Reset Magnetic Declination",
-    on_click=toggle_btns,
-    disabled=not st.session_state.isMagnetButton,
-):
-    st.session_state.dummyvelocity = np.copy(velocity)
-    st.session_state.isMagnet = False
-
-############# Velocity Cutoffs #################
-st.header("Velocity Cutoffs", divider="blue")
-st.write(
-    """
-Drop velocities whose magnitude is larger than the threshold.
-"""
-)
-with st.form(key="cutbin_form"):
-    maxuvel = st.number_input("Maximum Zonal Velocity Cutoff (cm/s)", 0, 2000, 250, 1)
-    maxvvel = st.number_input(
-        "Maximum Meridional Velocity Cutoff (cm/s)", 0, 2000, 250, 1
-    )
-    maxwvel = st.number_input("Maximum Vertical Velocity Cutoff (cm/s)", 0, 2000, 15, 1)
-    submit_cutoff = st.form_submit_button(label="Submit")
-
-if submit_cutoff:
-
-    st.session_state.maxuvel = maxuvel
-    st.session_state.maxvvel = maxvvel
-    st.session_state.maxwvel = maxwvel
-
-    st.session_state.maskd = velocity_cutoff(
-        velocity[0, :, :], st.session_state.maskd, cutoff=maxuvel
-    )
-    st.session_state.maskd = velocity_cutoff(
-        velocity[1, :, :], st.session_state.maskd, cutoff=maxvvel
-    )
-    st.session_state.maskd = velocity_cutoff(
-        velocity[2, :, :], st.session_state.maskd, cutoff=maxwvel
-    )
-    st.session_state.isCutoff = True
-
-
-if st.session_state.isCutoff:
-    st.write(":green[Cutoff Applied]")
-    a = {
-        "Max. Zonal Velocity": maxuvel,
-        "Max. Meridional Velocity": maxvvel,
-        "Max. Vertical Velocity": maxwvel,
-    }
-    st.write(a)
-
-
-############## DESPIKE DATA #################
-st.header("Despike Data", divider="blue")
-despike_kernal = st.number_input(
-    "Enter Despike Kernal Size for Median Filter", 0, 1000, 5, 1
-)
-despike_cutoff = st.number_input("Enter Despike Cutoff (mm/s)", 0, 1000, 150, 1)
-despike_button = st.button("Despike")
-if despike_button:
-
-    st.session_state.despike_kernal = despike_kernal
-    st.session_state.despike_cutoff = despike_cutoff
-
-    st.session_state.maskd = despike(
-        velocity[0, :, :],
-        st.session_state.maskd,
-        kernal_size=despike_kernal,
-        cutoff=despike_cutoff,
-    )
-    st.session_state.maskd = despike(
-        velocity[1, :, :],
-        st.session_state.maskd,
-        kernal_size=despike_kernal,
-        cutoff=despike_cutoff,
-    )
-    st.session_state.isDespike = True
-
-if st.session_state.isDespike:
-    st.write(":green[Data Despiked]")
-    b = {
-        "Kernal Size": despike_kernal,
-        "Despike Cutoff": despike_cutoff,
-    }
-    st.write(b)
-
-st.header("Remove Flatline", divider="blue")
-flatline_kernal = st.number_input("Enter Flatline Kernal Size", 0, 100, 13, 1)
-flatline_cutoff = st.number_input("Enter Flatline deviation", 0, 100, 1, 1)
-
-flatline_button = st.button("Remove Flatline")
-
-if flatline_button:
-    st.session_state.flatline_kernal = flatline_kernal
-    st.session_state.flatline_cutoff = flatline_cutoff
-
-    st.session_state.maskd = flatline(
-        velocity[0, :, :],
-        st.session_state.maskd,
-        kernal_size=flatline_kernal,
-        cutoff=flatline_cutoff,
-    )
-    st.session_state.maskd = flatline(
-        velocity[1, :, :],
-        st.session_state.maskd,
-        kernal_size=flatline_kernal,
-        cutoff=flatline_cutoff,
-    )
-    st.session_state.maskd = flatline(
-        velocity[2, :, :],
-        st.session_state.maskd,
-        kernal_size=flatline_kernal,
-        cutoff=flatline_cutoff,
-    )
-    st.session_state.isFlatline = True
-
-if st.session_state.isFlatline:
-    st.write(":green[Flatline Removed]")
-    b = {
-        "Kernal Size": flatline_kernal,
-        "Flatline Cutoff": flatline_cutoff,
-    }
-    st.write(b)
-
-
-##################### SAVE DATA ###################
-st.header("Save & Reset Data", divider="blue")
-
-
-def reset_data():
-    st.session_state.dummyvelocity = np.copy(st.session_state.velocity_regrid)
-    st.session_state.isMagnet = False
-    st.session_state.isCutoff = False
-    st.session_state.isDespike = False
-    st.session_state.isFlatline = False
-
-
-col1, col2 = st.columns([1, 1])
-with col1:
-    save_button = st.button(label="Save Data")
-    if save_button:
-        st.session_state.veltest_velocity = np.copy(st.session_state.dummyvelocity)
-        st.session_state.velocity_mask = np.copy(st.session_state.maskd)
-        st.session_state.isVelocityMask = True
-        st.write(":green[Mask data saved]")
-    else:
-        st.write(":red[Data not saved]")
-
-with col2:
-    st.button(label="Reset Data", on_click=reset_data)