pyTEMlib 0.2025.12.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- build/lib/pyTEMlib/__init__.py +36 -0
- build/lib/pyTEMlib/animation.py +667 -0
- build/lib/pyTEMlib/atom_tools.py +229 -0
- build/lib/pyTEMlib/config_dir.py +43 -0
- build/lib/pyTEMlib/crystal_tools.py +1219 -0
- build/lib/pyTEMlib/diffraction_plot.py +757 -0
- build/lib/pyTEMlib/dynamic_scattering.py +298 -0
- build/lib/pyTEMlib/eds_tools.py +901 -0
- build/lib/pyTEMlib/eds_xsections.py +268 -0
- build/lib/pyTEMlib/eels_tools/__init__.py +44 -0
- build/lib/pyTEMlib/eels_tools/core_loss_tools.py +751 -0
- build/lib/pyTEMlib/eels_tools/eels_database.py +134 -0
- build/lib/pyTEMlib/eels_tools/low_loss_tools.py +655 -0
- build/lib/pyTEMlib/eels_tools/peak_fit_tools.py +175 -0
- build/lib/pyTEMlib/eels_tools/zero_loss_tools.py +264 -0
- build/lib/pyTEMlib/file_reader.py +275 -0
- build/lib/pyTEMlib/file_tools.py +816 -0
- build/lib/pyTEMlib/get_bote_salvat.py +69 -0
- build/lib/pyTEMlib/graph_tools.py +1153 -0
- build/lib/pyTEMlib/graph_viz.py +599 -0
- build/lib/pyTEMlib/image/__init__.py +37 -0
- build/lib/pyTEMlib/image/image_atoms.py +270 -0
- build/lib/pyTEMlib/image/image_clean.py +198 -0
- build/lib/pyTEMlib/image/image_distortion.py +299 -0
- build/lib/pyTEMlib/image/image_fft.py +278 -0
- build/lib/pyTEMlib/image/image_graph.py +926 -0
- build/lib/pyTEMlib/image/image_registration.py +316 -0
- build/lib/pyTEMlib/image/image_utilities.py +308 -0
- build/lib/pyTEMlib/image/image_window.py +421 -0
- build/lib/pyTEMlib/image_tools.py +701 -0
- build/lib/pyTEMlib/interactive_image.py +1 -0
- build/lib/pyTEMlib/kinematic_scattering.py +1145 -0
- build/lib/pyTEMlib/microscope.py +62 -0
- build/lib/pyTEMlib/probe_tools.py +928 -0
- build/lib/pyTEMlib/sidpy_tools.py +153 -0
- build/lib/pyTEMlib/simulation_tools.py +104 -0
- build/lib/pyTEMlib/test.py +437 -0
- build/lib/pyTEMlib/utilities.py +431 -0
- build/lib/pyTEMlib/version.py +5 -0
- build/lib/pyTEMlib/xrpa_x_sections.py +20976 -0
- pyTEMlib/__init__.py +36 -0
- pyTEMlib/animation.py +667 -0
- pyTEMlib/atom_tools.py +229 -0
- pyTEMlib/config_dir.py +43 -0
- pyTEMlib/crystal_tools.py +1219 -0
- pyTEMlib/data/k_factors_Bruker_15keV.json +293 -0
- pyTEMlib/data/k_factors_Thermo_200keV.json +494 -0
- pyTEMlib/data/xrays_X_section_100kV.json +19334 -0
- pyTEMlib/data/xrays_X_section_200kV.json +18711 -0
- pyTEMlib/data/xrays_X_section_300kV.json +18347 -0
- pyTEMlib/data/xrays_X_section_60kV.json +20202 -0
- pyTEMlib/diffraction_plot.py +757 -0
- pyTEMlib/dynamic_scattering.py +298 -0
- pyTEMlib/eds_tools.py +901 -0
- pyTEMlib/eds_xsections.py +268 -0
- pyTEMlib/eels_tools/__init__.py +44 -0
- pyTEMlib/eels_tools/core_loss_tools.py +751 -0
- pyTEMlib/eels_tools/eels_database.py +134 -0
- pyTEMlib/eels_tools/low_loss_tools.py +655 -0
- pyTEMlib/eels_tools/peak_fit_tools.py +175 -0
- pyTEMlib/eels_tools/zero_loss_tools.py +264 -0
- pyTEMlib/file_reader.py +275 -0
- pyTEMlib/file_tools.py +816 -0
- pyTEMlib/get_bote_salvat.py +69 -0
- pyTEMlib/graph_tools.py +1153 -0
- pyTEMlib/graph_viz.py +599 -0
- pyTEMlib/image/__init__.py +37 -0
- pyTEMlib/image/image_atoms.py +270 -0
- pyTEMlib/image/image_clean.py +198 -0
- pyTEMlib/image/image_distortion.py +299 -0
- pyTEMlib/image/image_fft.py +278 -0
- pyTEMlib/image/image_graph.py +926 -0
- pyTEMlib/image/image_registration.py +316 -0
- pyTEMlib/image/image_utilities.py +308 -0
- pyTEMlib/image/image_window.py +421 -0
- pyTEMlib/image_tools.py +701 -0
- pyTEMlib/interactive_image.py +1 -0
- pyTEMlib/kinematic_scattering.py +1145 -0
- pyTEMlib/microscope.py +62 -0
- pyTEMlib/probe_tools.py +928 -0
- pyTEMlib/sidpy_tools.py +153 -0
- pyTEMlib/simulation_tools.py +104 -0
- pyTEMlib/test.py +437 -0
- pyTEMlib/utilities.py +431 -0
- pyTEMlib/version.py +5 -0
- pyTEMlib/xrpa_x_sections.py +20976 -0
- pytemlib-0.2025.12.0.dist-info/METADATA +100 -0
- pytemlib-0.2025.12.0.dist-info/RECORD +92 -0
- pytemlib-0.2025.12.0.dist-info/WHEEL +5 -0
- pytemlib-0.2025.12.0.dist-info/entry_points.txt +2 -0
- pytemlib-0.2025.12.0.dist-info/licenses/LICENSE +21 -0
- pytemlib-0.2025.12.0.dist-info/top_level.txt +5 -0
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Metadata-Version: 2.4
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Name: pyTEMlib
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Version: 0.2025.12.0
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Summary: pyTEM: TEM Data Quantification library through a model-based approach
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Author-email: Gerd Duscher <gduscher@utk.edu>
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License-Expression: MIT
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Project-URL: Homepage, https://pycroscopy.github.io/pyTEMlib/about.html
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Project-URL: Repository, https://github.com/pycroscopy/pyTEMlib
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Project-URL: Documentation, https://pycroscopy.github.io/pyTEMlib/
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Keywords: imaging,spectra,transmission,electron,microscopy,scientific,scanning,eels,visualization,processing,storage,hdf5,diffraction
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Platform: Linux
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Platform: Mac OSX
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Platform: Windows 11/10
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Classifier: Development Status :: 2 - Pre-Alpha
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Classifier: Environment :: Console
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Classifier: Intended Audience :: Science/Research
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Classifier: Natural Language :: English
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Classifier: Operating System :: OS Independent
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Classifier: Programming Language :: Cython
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Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.10
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Classifier: Programming Language :: Python :: 3.11
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Classifier: Programming Language :: Python :: 3.12
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Classifier: Programming Language :: Python :: 3.13
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Classifier: Programming Language :: Python :: Implementation :: CPython
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Classifier: Topic :: Scientific/Engineering :: Information Analysis
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Requires-Python: >=3.9
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Description-Content-Type: text/x-rst
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License-File: LICENSE
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Requires-Dist: scipy
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Requires-Dist: numpy
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Requires-Dist: pillow
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Requires-Dist: ase
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Requires-Dist: tqdm
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Requires-Dist: plotly
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Requires-Dist: pandas
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Requires-Dist: requests
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Requires-Dist: lxml
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Requires-Dist: ipympl
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Requires-Dist: spglib
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Requires-Dist: simpleitk
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Requires-Dist: scikit-image
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Requires-Dist: scikit-learn
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Requires-Dist: pyNSID>=0.0.7
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Requires-Dist: sidpy>=0.12.7
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Requires-Dist: SciFiReaders>=0.12.4
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Requires-Dist: xraylib
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Provides-Extra: test
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Requires-Dist: pytest; extra == "test"
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Requires-Dist: pytest-runner; extra == "test"
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Dynamic: license-file
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pyTEMlib
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========
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.. image:: https://github.com/pycroscopy/pyTEMlib/workflows/build/badge.svg?branch=master
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:target: https://github.com/pycroscopy/pyTEMlib/actions?query=workflow%3Abuild
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:alt: GitHub Actions
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.. image:: https://img.shields.io/pypi/v/pyTEMlib.svg
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:target: https://pypi.org/project/pyTEMlib/
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:alt: PyPI
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.. image:: https://img.shields.io/conda/vn/conda-forge/pyTEMlib.svg
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:target: https://github.com/conda-forge/pyTEMlib-feedstock
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:alt: conda-forge
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.. image:: https://codecov.io/gh/pycroscopy/pyTEMlib/branch/master/graph/badge.svg?token=
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:target: https://codecov.io/gh/pycroscopy/pyTEMlib
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:alt: CodeCov
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.. image:: https://img.shields.io/pypi/l/pyTEMlib.svg
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:target: https://pypi.org/project/pyTEMlib/
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:alt: License
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.. image:: http://pepy.tech/badge/pyTEMlib
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:target: http://pepy.tech/project/pyTEMlib
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:alt: Downloads
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.. image:: https://zenodo.org/badge/138171750.svg
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:target: https://zenodo.org/badge/latestdoi/138171750
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:alt: DOI
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pyTEMlib is a package to read and process various kind of data acquired with a (scanning) transmission electron microscope (STEM).
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The package is written in pure python and depends on various other libraries.
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All data, user input, and results are stored as `NSID-formatted <https://pycroscopy.github.io/pyNSID/nsid.html>`_ HDF5 files.
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The data are all presented as `sidpy.Dataset <https://pycroscopy.github.io/sidpy/notebooks/00_basic_usage/create_dataset.html>`_ objects
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Install pyTEMlib via pip as:
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``python3 -m pip install pyTEMlib``
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or via conda:
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``conda install pyTEMlib -c conda-forge``
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These installation options are also available in the `example notebooks <https://github.com/pycroscopy/pyTEMlib/notebooks>`_
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build/lib/pyTEMlib/__init__.py,sha256=fvyVcJdNOv23j36HmcjylvI8QMsBUk_0ic36gxq_01U,1230
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build/lib/pyTEMlib/animation.py,sha256=dyjGf9_OXXVegKKfhSgl2gGDtOeoDCPiVwzbIo7hIPc,26322
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build/lib/pyTEMlib/atom_tools.py,sha256=9w8I0_An5x0iMNByYJWgmO3xBIXqX9XLISlWt1Zgbls,7192
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build/lib/pyTEMlib/config_dir.py,sha256=cGxbzjL4vhiJavO7vvxrWRtjvz-Orc9t9qKZ9YYPZMg,1716
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build/lib/pyTEMlib/crystal_tools.py,sha256=JWi_wHywR6ufNck_TFf2HV5_7xrULCVzIJ-8iF-npn0,61388
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build/lib/pyTEMlib/diffraction_plot.py,sha256=SgGsJ5JAiDbSjdSynUwkNCEn82b1XQ6323ZlsUOi-hg,27961
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build/lib/pyTEMlib/dynamic_scattering.py,sha256=qfihx2C5KeuEoF8ND1zdOTixxVZ8wyb_1B8lNX_hdqI,9573
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build/lib/pyTEMlib/eds_tools.py,sha256=mCuF1Zm9ixxAcy5TSVnI3TZlUDDDR9Q0a4IcTT7uJKY,37266
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build/lib/pyTEMlib/eds_xsections.py,sha256=JHGeE2n-oEXV2Cmn6Im1cqkp1oi3eXVMsMDlaM7hD2Q,12261
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build/lib/pyTEMlib/file_reader.py,sha256=aXVOxLcahLYRicsQ1lXtvs3-XyLo4oPncwixwRvCOg4,12159
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build/lib/pyTEMlib/file_tools.py,sha256=auGW4M09RfKCKgSXl-0NO6t3-FJi2bOum3txJxVUSmo,29753
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build/lib/pyTEMlib/get_bote_salvat.py,sha256=7ShAX-vG5cPYvRK_weu8RywCxLcfboNmvbY0XgUcAz8,2603
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build/lib/pyTEMlib/graph_tools.py,sha256=bHzNh7B4K2qHgL-o3IqlnwvB82aEhhYVSQ34uv2hmOQ,43233
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build/lib/pyTEMlib/graph_viz.py,sha256=Y98rkVXN4U_ZE27GRZqISdU46OYmpsl3mEkQi0W3VpA,20008
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build/lib/pyTEMlib/image_tools.py,sha256=PvLoMTCJfGncarhPf3SsbfCNUazDZ82VsENB5dRxiSo,27440
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build/lib/pyTEMlib/interactive_image.py,sha256=5PwypcA1OjLAD-fi8bmWWFHuOjdIPVY9Dh59V24WuDA,34
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build/lib/pyTEMlib/kinematic_scattering.py,sha256=cpy_H6fFLihrFSTj4Yq4jCPrwbhTwrBbeBVk8Szufy8,42229
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build/lib/pyTEMlib/microscope.py,sha256=7fzvcrwKoBUyAZ-ArRuCXFw5ZXIYaDbJIn60l6ABVFw,1733
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build/lib/pyTEMlib/probe_tools.py,sha256=lkDhQPe38im95wJY8XQ_z-sKyqed9R2tkpeVHc67HDA,39067
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build/lib/pyTEMlib/sidpy_tools.py,sha256=0oIx-qMtEmcZmLazQKW19dd-KoxyY3B15aIeMcyHA8E,4878
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build/lib/pyTEMlib/simulation_tools.py,sha256=RmegD5TpQMU68uASvzZWVplAqs7bM5KkF6bWDWLjyc0,2799
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build/lib/pyTEMlib/test.py,sha256=eb5Zer2g9cXxiRGajtbN1gVBsRLuejCtxU8I1P7wG7M,15753
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build/lib/pyTEMlib/utilities.py,sha256=CwPDQakrryBOqtHfndrltR72kd1H0yJWKavZMfVgLLI,14623
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build/lib/pyTEMlib/version.py,sha256=0wDpGjja8PyZNdHWe_gE1NSgeO0c1dZEXnNg2-3JJB0,77
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build/lib/pyTEMlib/xrpa_x_sections.py,sha256=QroP5lNgKJJKCF5UQdakTdQXV0LQt1ToCybALNEdEBY,1825460
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build/lib/pyTEMlib/eels_tools/__init__.py,sha256=5T81wdFoXGlpt1ZOp8tEQD3vu0PYYkYKnlED2AQpGoY,2703
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pyTEMlib/__init__.py,sha256=fvyVcJdNOv23j36HmcjylvI8QMsBUk_0ic36gxq_01U,1230
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pyTEMlib/animation.py,sha256=dyjGf9_OXXVegKKfhSgl2gGDtOeoDCPiVwzbIo7hIPc,26322
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pyTEMlib/atom_tools.py,sha256=9w8I0_An5x0iMNByYJWgmO3xBIXqX9XLISlWt1Zgbls,7192
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pyTEMlib/config_dir.py,sha256=cGxbzjL4vhiJavO7vvxrWRtjvz-Orc9t9qKZ9YYPZMg,1716
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pyTEMlib/crystal_tools.py,sha256=JWi_wHywR6ufNck_TFf2HV5_7xrULCVzIJ-8iF-npn0,61388
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pyTEMlib/diffraction_plot.py,sha256=SgGsJ5JAiDbSjdSynUwkNCEn82b1XQ6323ZlsUOi-hg,27961
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pyTEMlib/dynamic_scattering.py,sha256=qfihx2C5KeuEoF8ND1zdOTixxVZ8wyb_1B8lNX_hdqI,9573
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pyTEMlib/eds_tools.py,sha256=mCuF1Zm9ixxAcy5TSVnI3TZlUDDDR9Q0a4IcTT7uJKY,37266
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