pyTEMlib 0.2020.11.0__py3-none-any.whl → 0.2024.8.4__py3-none-any.whl

pyTEMlib/__version__.py

@@ -1,2 +0,0 @@
-version = '0.12.2019.2'
-time = '2019-12-22 20:20:26'

pyTEMlib/data/TEMlibrc

@@ -1,68 +0,0 @@
-# -*- Mode: Shell-Script -*-  Not really, but shows comments correctly
-# $Id: quantifitrc 001 2010-12-01 gerd $
-# $Revision: 113 $"
-#***************************************************************************
-#
-# Configuration file for Quantifit
-#
-# ===========================================================
-#
-#
-# The format of this file is simply one of 'key value' lines.
-# Lines containing only whitespace at the beginning and then a # are ignored
-# as comments. But comments can NOT be put on lines with data.
-
-# This part is taken from the eelslab code of Fran.
-# Many of the values are not used
-# The meaning and use of each key are explained below.
-
-#---------------------------------------------------------------------------
-
-
-# Default microscope as defined in the file microscopes.csv. This file can
-# be edited with any spreadsheet programme of with a text editor. Its default
-# location in ~/.quantifit in Linux (and other UNIXES) and %APPDATA/eelslab in 
-# windows.
-microscope Libra 200
-
-# Default path for the GATAN GOS files. If 'None' EELSLab will try to find
-# the files in the standard locations ( GATAN tree for windows, ~/.eelslab
-# folder in UNIXes. If it fails, it will exit and ask to define the path in
-# this file.
-GOS_dir None 
-
-# Default fine structure width in eV. This defines the exclude after in the FIT
-fs_emax 30
-
-# Certain calculations, i.e. fitting the background, requiere removing the
-# edges from the experimental data. For that the values of the edge onset
-# minus the preedge_safe_window_width will be used. In eV.
-preedge_safe_window_width 5
-
-# NOT USED BY QUANTIFIT FROM HERE ON
-
-# Wether the fine structure is activated by default. Choose 1 or 0 ( True or False)
-fs_state 1
-
-# The fine structure fingerprinting is done by interpolating a given number
-# of knots with a third order spline. The knots factor is defined as
-# (number of knots) / (number of channels).
-knots_factor 0.3
-
-# 
-min_distance_between_edges_for_fine_structure 0.
-
-# Default fitter.
-fitter leastsq
-
-# Default file format
-file_format nc
-
-# Syncronize the core loss alignment and energy origin with the low loss.
-# It is interesting for dual EELS cameras. Choose 1 or 0 ( True or False)
-synchronize_cl_with_ll 0
-
-# If 1 the object will be plot when loaded.
-plot_on_load 0
-
-

pyTEMlib/data/edges_db.csv

@@ -1,189 +0,0 @@
-Li.K1,3,55,,Major
-Be.K1,4,111,,Major
-B.K1,5,188,,Major
-C.K1,6,284,,Major
-C.K1a,6,284,,Major
-N.K1,7,401,,Major
-O.K1,8,532,,Major
-F.K1,9,685,,Major
-Ne.K1,10,867,,Major
-Na.K1,11,1072,,Major
-Na.L1,11,63,,Minor
-Na.L3,11,31,,Major
-Mg.K1,12,1305,,Major
-Mg.L1,12,89,,Minor
-Mg.L3,12,51,51,Major
-Al.K1,13,1560,,Major
-Al.L1,13,118,,Minor
-Al.L3,13,73,,Major
-Si.K1,14,1839,,Major
-Si.L1,14,149.7,,Minor
-Si.L3,14,99.2,99.8,Major
-P.K1,15,2146,,Major
-P.L1,15,189,,Minor
-P.L3,15,132,,Major
-S.L1,16,229,,Minor
-S.L3,16,165,,Major
-Cl.L1,17,270,,Minor
-Cl.L3,17,200,,Major
-Ar.L1,18,320,,Minor
-Ar.L3,18,245,,Major
-K.L1,19,377,,Minor
-K.L1a,19,377,,Minor
-K.L3,19,294,296,Major
-Ca.L1,20,438,,Major
-Ca.L3,20,346,350,Minor
-Sc.L1,21,500,,Minor
-Sc.L3,21,402,407,Major
-Sc.M3,21,32,32,Major
-Ti.L1,22,564,,Minor
-Ti.L3,22,456,462,Major
-Ti.M3,22,47,47,Major
-V.L1,23,628,,Minor
-V.L3,23,513,521,Major
-V.M3,23,47,47,Major
-Cr.L1,24,695,,Minor
-Cr.L3,24,575,584,Major
-Cr.M3,24,48,48,Major
-Mn.L1,25,769,,Minor
-Mn.L3,25,640,651,Major
-Mn.M3,25,51,51,Major
-Fe.K1,26,7113,,Minor
-Fe.L1,26,846,,Minor
-Fe.L3,26,708,721,Major
-Fe.M3,26,57,57,Major
-Co.L1,27,926,,Minor
-Co.L3,27,779,794,Major
-Co.M3,27,62,62,Major
-Ni.L1,28,1008,,Minor
-Ni.L3,28,855,872,Major
-Ni.M3,28,68,68,Major
-Cu.L1,29,1096,,Minor
-Cu.L3,29,931,951,Major
-Cu.M3,29,74,74,Major
-Zn.L1,30,1194,,Minor
-Zn.L3,30,1020,1043,Major
-Zn.M3,30,87,87,Minor
-Ga.L1,31,1298,,Minor
-Ga.L3,31,1115,1142,Major
-Ge.L1,32,1414,,Minor
-Ge.L3,32,1217,1248,Major
-As.L1,33,1526,,Minor
-As.L3,33,1323,1359,Major
-Se.L1,34,1654,,Minor
-Se.L3,34,1436,1476,Major
-Br.L1,35,1782,,Minor
-Br.L3,35,1550,1596,Major
-Kr.L1,36,1921,,Minor
-Kr.L3,36,1675,1727,Major
-Kr.M5,36,89,89,Major
-Rb.L1,37,2065,,Minor
-Rb.L3,37,1804,1864,Major
-Rb.M3,37,238,247,Major
-Rb.M5,37,110,110,Major
-Sr.L1,38,2216,,Minor
-Sr.L3,38,1940,2007,Minor
-Sr.M3,38,269,280,Minor
-Sr.M5,38,134,134,Major
-Y.L1,39,2372,,Minor
-Y.L3,39,2080,2155,Major
-Y.M3,39,300,312,Minor
-Y.M5,39,160,160,Major
-Zr.L1,40,2532,,Minor
-Zr.L3,40,2222,2307,Major
-Zr.M3,40,330,344,Minor
-Zr.M5,40,181,181,Major
-Nb.L1,41,2698,,Minor
-Nb.L3,41,2371,2465,Major
-Nb.M3,41,363,378,Major
-Nb.M5,41,202.3,205,Major
-Mo.L1,42,2866,,
-Mo.L3,42,2520,2625,Major
-Mo.M3,42,392,410,Minor
-Mo.M5,42,227,228,Major
-Tc.M5,43,227,228,Major
-Ru.M3,44,461,483,Minor
-Ru.M5,44,279,279,Major
-Rh.M3,45,496,521,Minor
-Rh.M5,45,308,312,Major
-Pd.M3,46,531,559,Minor
-Pd.M5,46,335,340,Major
-Ag.M3,47,571,602,Minor
-Ag.M5,47,367,373,Major
-Cd.M3,48,616,651,Minor
-Cd.M5,48,404,411,Major
-In.M3,49,664,702,Minor
-In.M5,49,443,451,Major
-Sn.M3,50,714,756,Minor
-Sn.M5,50,485,494,Major
-Sb.M3,51,766,812,Minor
-Sb.M5,51,528,537,Major
-Te.M3,52,819,870,Minor
-Te.M5,52,572,582,Major
-I.M3,53,875,930,Minor
-I.M5,53,620,631,Major
-Xe.M5,54,672,685,Major
-Cs.M3,55,998,1065,Minor
-Cs.M5,55,726,740,Major
-Cs.N5,55,78,78,Major
-Ba.M3,56,1062,1137,Minor
-Ba.M5,56,781,796,Major
-Ba.N5,56,90,90,Major
-La.M3,57,1123,1204,Minor
-La.M5,57,832,849,Major
-La.N5,57,99,99,Major
-Ce.M3,58,1185,1273,Minor
-Ce.M5,58,883,901,Major
-Ce.N5,58,110,110,Major
-Pr.M3,59,1242,1337,Minor
-Pr.M5,59,931,951,Major
-Pr.N5,59,114,114,Major
-Nd.M3,60,1297,1403,Minor
-Nd.M5,60,978,1000,Major
-Nd.N5,60,118,118,Major
-Sm.M3,62,1420,1541,Minor
-Sm.M5,62,1080,1106,Major
-Sm.N5,62,130,130,Major
-Eu.M3,63,1481,1614,Minor
-Eu.M5,63,1131,1161,Major
-Eu.N5,63,134,134,Major
-Gd.M3,64,1544,1688,Minor
-Gd.M5,64,1185,1217,Major
-Gd.N5,64,141,141,Major
-Tb.M3,65,1611,1768,Minor
-Tb.M5,65,1241,1275,Major
-Tb.N5,65,148,148,Major
-Dy.M3,66,1676,1842,Minor
-Dy.M5,66,1295,1332,Major
-Dy.N5,66,154,154,Major
-Ho.M3,67,1741,1923,Minor
-Ho.M5,67,1351,1391,Major
-Ho.N5,67,161,161,Major
-Er.M3,68,1812,2006,Minor
-Er.M5,68,1409,1453,Major
-Er.N5,68,168,168,Major
-Tm.M3,69,1884,2090,Minor
-Tm.M5,69,1468,1515,Major
-Tm.N5,69,177,177,Major
-Yb.M3,70,1950,2173,Minor
-Yb.M5,70,1528,1576,Major
-Yb.N5,70,184,184,Major
-Lu.M3,71,2024,2263,Minor
-Lu.M5,71,1588,1639,Major
-Lu.N5,71,195,195,Major
-Hf.M5,72,1662,1716,Major
-Ta.M5,73,1735,1793,Major
-W.M5,74,1809,1872,Major
-Re.M5,75,1883,1949,Major
-Os.M5,76,1960,2031,Major
-Ir.M5,77,2040,2116,Major
-Pt.M5,78,2122,2202,Major
-Au.M5,79,2206,2291,Major
-Hg.M5,80,2295,2385,Major
-Tl.M5,81,2389,2485,Major
-Pb.M5,82,2484,2586,Major
-Bi.M5,83,2580,2688,Major
-Th.M5,90,3332,3491,Major
-Th.O5,90,83,83,Major
-U.M5,92,3552,3728,Major
-U.O5,92,96,96,Major

pyTEMlib/data/fparam.txt

@@ -1,103 +0,0 @@
-  3.55221981e-002  2.25354459e-001  2.62782423e-002  2.25354636e-001  3.52695173e-002  2.25355749e-001  6.77755867e-002  4.38850114e+000  3.56601775e-003  4.03881150e-001  2.76131055e-002  1.44488619e+000
-  3.73696013e-002  5.36479656e-001  3.60228922e-002  5.36480729e-001  1.22544155e-001  5.36493547e-001  5.06400486e-003  2.70930915e-001  2.03620941e-002  8.51962305e-001  2.74236552e-002  2.33542971e+000
-  1.07960369e-001  9.23258728e-001  1.06777482e-001  9.23233431e-001  7.71392003e-002  4.74123946e-002  2.75244208e-003  1.69761557e-001  1.08034077e+000  1.90675572e+001  3.46769903e-001  6.28398894e+000
-  1.96662954e-001  1.95719345e+000  8.82912188e-002  1.00163923e-001  1.03185752e-001  1.00168729e-001  7.71828818e-001  9.41653240e+000  2.71710968e-001  3.26602502e+000  1.71561398e-003  9.36064197e-002
-  1.50630127e-001  1.49860678e-001  1.78976266e-001  3.60414978e+000  1.54917583e-001  1.49855459e-001  1.23462541e-003  6.10670225e-002  1.93865663e-001  2.02637930e+000  5.14164144e-001  5.78223175e+000
-  2.53148417e-001  2.08761775e-001  1.66953010e-001  5.69804854e+000  1.60250013e-001  2.08774166e-001  1.41633354e-001  1.34112859e+000  3.60244465e-001  3.81665326e+000  8.66192838e-004  4.12204523e-002
-  2.81561298e-001  2.83238399e-001  1.46347552e-001  1.05047554e+001  2.50794513e-001  2.83236538e-001  9.21173808e-004  3.56658185e-002  1.07049727e-001  9.94861556e-001  2.49131328e-001  2.74883575e+000
-  3.68590229e-001  3.67542561e-001  1.32896450e-001  1.93954830e+001  2.77101233e-001  3.67539567e-001  8.39309305e-002  7.58355003e-001  1.81631127e-001  2.04360334e+000  1.05289871e-003  3.12500946e-002
-  3.91424182e-001  4.70917753e-001  1.27189158e-001  4.16483304e+001  3.65098718e-001  4.70915966e-001  1.34924127e-003  2.68370605e-002  1.45113404e-001  1.57347346e+000  6.96750443e-002  5.91880259e-001
-  9.11673340e-002  1.99358219e+002  8.63172759e-002  1.99191327e+002  8.63108401e-001  5.88361692e-001  1.23641141e-001  1.23470914e+000  1.91465709e-003  1.96822966e-002  5.91805145e-002  4.64885011e-001
-  1.36017407e-001  4.95428367e-002  1.54831417e-001  1.65397748e+001  7.73349869e-001  8.82918067e-001  1.27047208e-001  7.00982715e-001  3.79285907e-002  2.61475739e-001  9.87509284e-001  1.99616037e+001
-  3.03141167e-001  8.34631821e-002  1.00200593e-001  3.05607062e+001  7.58779849e-001  1.63636518e+000  3.45903833e-002  2.17635235e-001  1.20116322e-001  5.62363305e-001  9.59830513e-001  1.20698504e+001
-  7.79634560e-001  2.72405892e+000  4.26174959e-001  9.11375865e-002  5.72300972e-002  7.97635831e+001  3.27350675e-002  1.79698265e-001  7.85910770e-001  8.64611280e+000  1.13704700e-001  4.50774270e-001
-  1.20120147e-001  7.06310153e+001  1.06498026e+000  1.04600373e+000  1.82256296e-001  8.68866872e-002  3.06076088e-002  2.14762808e-001  1.10867696e+000  3.69205948e+000  1.58258089e+000  9.93119843e+000
-  3.09711164e-001  1.24791065e-001  1.18252680e-001  1.09178460e+002  1.04430670e+000  1.34549595e+000  2.66000245e-002  1.83098148e-001  9.43325900e-001  2.88341609e+000  1.34138576e+000  7.54960845e+000
-  4.57382135e-001  1.68476043e-001  1.27262739e-001  1.93866119e+002  1.00335412e+000  1.74538684e+000  2.36808666e-002  1.58174585e-001  1.13442225e+000  5.93263595e+000  8.08008430e-001  2.31591942e+000
-  3.12243550e-001  9.47996070e+000  3.83195418e-001  9.48012637e+000  9.41823736e-001  2.35734126e-001  5.59701797e-002  1.68708567e-001  1.09028166e-002  6.75771202e-002  7.79430014e-001  2.98107659e+000
-  3.38555465e-001  1.30104349e+001  3.31436858e-001  1.30102849e+001  1.07106900e+000  2.88010245e-001  4.92223623e-002  1.36749282e-001  8.55589133e-003  5.18043063e-002  7.63912327e-001  2.44189141e+000
-  6.89812600e-001  7.19216212e+000  1.46536847e-001  3.78571593e-002  9.70417012e-001  3.59137547e-001  5.45732070e-001  1.68372903e+000  1.74740906e+000  3.21777454e+001  2.65720079e-002  1.03365168e-001
-  8.71890292e-001  5.86619912e-001  6.58352512e-001  8.00437197e+000  3.70818603e-001  6.13547057e-002  2.21094483e-002  9.08697675e-002  1.78897674e+000  2.10605140e+001  4.93215780e-001  1.33112304e+000
-  9.12261547e-001  5.19023783e-001  7.11659199e-001  7.99293247e+000  3.70782468e-001  6.76760444e-002  1.89930612e-002  8.15872399e-002  1.56348982e+000  1.78791604e+001  4.07326109e-001  1.11474352e+000
-  7.37291729e-001  8.32612403e+000  9.96300042e-001  4.96982599e-001  3.55417565e-001  7.26595855e-002  1.63350335e-002  7.31735660e-002  3.60199179e-001  9.57232308e-001  1.42171303e+000  1.58512114e+001
-  3.40419589e-001  7.72885577e-002  7.44572000e-001  8.94326818e+000  1.09904818e+000  5.04948256e-001  1.42047505e-002  6.56803788e-002  3.27534098e-001  8.38161439e-001  1.30529927e+000  1.43590348e+001
-  3.92063635e-001  7.35286531e-002  1.34668097e+000  1.12818504e+000  5.39341680e-001  1.14415046e+001  4.85525850e-001  1.58837898e+000  1.19711645e-002  5.97713788e-002  3.37954593e-001  6.74850221e-001
-  7.17361123e-001  1.12697838e+001  1.32828136e+000  5.80850091e-001  3.31233708e-001  8.73514102e-002  2.76477361e-001  6.69130447e-001  1.13628473e-002  5.32732815e-002  1.08008900e+000  1.21682893e+001
-  1.44902411e+000  6.38640902e-001  3.35804378e-001  9.30314230e-002  6.90162940e-001  1.31851881e+001  1.05054521e-002  4.82320902e-002  2.54242669e-001  6.06112572e-001  9.70992561e-001  1.12847296e+001
-  3.39463008e-001  9.83337442e-002  1.57689974e+000  7.04328108e-001  6.58282438e-001  1.58689413e+001  2.34491895e-001  5.53325204e-001  9.93605905e-003  4.38330874e-002  8.76823538e-001  1.05638438e+001
-  1.70434795e+000  7.75692056e-001  3.44977435e-001  1.03825110e-001  6.26884420e-001  1.95735691e+001  2.16907769e-001  5.07719273e-001  9.59473827e-003  3.99824503e-002  7.89344693e-001  9.91968148e+000
-  1.76966715e+000  9.78202148e-001  3.43918043e-001  1.02654437e-001  6.45510267e-001  1.56360030e+001  2.15730439e-001  8.68921347e-001  7.68971207e-003  3.87041794e-002  1.79557785e-001  3.94476391e-001
-  2.00111033e+000  2.19603648e+000  5.70973035e-001  1.26562618e-001  3.04235247e-001  4.65681839e+001  3.97986959e-001  8.69664235e-001  7.26712178e-003  3.30179102e-002  2.37377314e-001  3.68690692e-001
-  2.04315340e+000  2.32649260e+000  6.21558623e-001  1.09358880e-001  3.12804866e-001  5.26676038e+001  3.31510041e-001  7.44158557e-001  7.03054223e-003  3.07180585e-002  2.04524025e-001  3.29853209e-001
-  5.88274727e-001  1.16695039e-001  2.01158811e+000  1.39466069e+000  5.56077128e-001  8.12542932e+001  9.93470453e-003  2.66995907e-002  1.83769260e-001  3.65293264e-001  7.43395173e-001  6.91755967e+000
-  7.66111954e-001  1.44710861e-001  1.97328728e+000  1.74141662e+000  6.67404866e-001  1.88379573e+002  1.00067871e-002  2.27061261e-002  1.80181966e-001  3.32551336e-001  8.23463715e-001  5.85804925e+000
-  9.36712842e-001  1.75282629e-001  5.93283862e-001  1.79861777e+002  1.92387969e+000  2.10899623e+000  1.72794212e-001  2.99451919e-001  8.68719842e-003  2.16039688e-002  8.92813053e-001  4.91654242e+000
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-  1.81058198e+000  3.27014311e+000  3.72947511e-001  1.22209190e+002  1.31922133e+000  2.54796158e-001  1.62403804e-001  2.46303004e-001  5.49953845e-003  1.96113077e-002  1.00104155e+000  3.60853216e+000
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pyTEMlib/data/microscopes.csv

@@ -1,7 +0,0 @@
-Microscope,E0,alpha,beta,pppc,correlation_factor,VOA_conv,EELS_b1,EELS_b2,EELS_b100,MADF_offset,MADF_slope,HADF_offset,HADF_slope,BF_offset,BF_slope
-Default,1.00E+05,20,13,1,1,0,0,0,0,0,0,0,0,0,0
-501,1.00E+05,20,13,1,1,1.58E+06,0.05,0.1,0.2,0,0,0,0,0,0
-UltraSTEM 60,6.00E+04,30,50,1,1,1.79E+07,0.2,0.45,0.9,0.001383,4.04E-06,0,0,0,0
-UltraSTEM 100,1.00E+05,30,50,1,1,6.24E+06,0.45,1,2,0,0,0,0,0,0
-Libra 200,2.00E+05,10,15,1,1,6241509.647,0.0634,0.0634,0.0634,0,0,0,0,0,0
-UltraSTEM 200,2.00E+05,30,50,1,1,6.24E+06,0.45,1,2,0,0,0,0,0,0

pyTEMlib/data/microscopes.xml

@@ -1,167 +0,0 @@
-<?xml version="1.0"?>
-<?mso-application progid="Excel.Sheet"?>
-<Workbook xmlns="urn:schemas-microsoft-com:office:spreadsheet"
- xmlns:o="urn:schemas-microsoft-com:office:office"
- xmlns:x="urn:schemas-microsoft-com:office:excel"
- xmlns:ss="urn:schemas-microsoft-com:office:spreadsheet"
- xmlns:html="http://www.w3.org/TR/REC-html40">
- <DocumentProperties xmlns="urn:schemas-microsoft-com:office:office">
-  <Author>nyd</Author>
-  <LastAuthor>nyd</LastAuthor>
-  <Created>2012-06-24T03:08:43Z</Created>
-  <Version>14.00</Version>
- </DocumentProperties>
- <OfficeDocumentSettings xmlns="urn:schemas-microsoft-com:office:office">
-  <AllowPNG/>
- </OfficeDocumentSettings>
- <ExcelWorkbook xmlns="urn:schemas-microsoft-com:office:excel">
-  <WindowHeight>7995</WindowHeight>
-  <WindowWidth>16275</WindowWidth>
-  <WindowTopX>240</WindowTopX>
-  <WindowTopY>75</WindowTopY>
-  <ProtectStructure>False</ProtectStructure>
-  <ProtectWindows>False</ProtectWindows>
- </ExcelWorkbook>
- <Styles>
-  <Style ss:ID="Default" ss:Name="Normal">
-   <Alignment ss:Vertical="Bottom"/>
-   <Borders/>
-   <Font ss:FontName="Calibri" x:Family="Swiss" ss:Size="11" ss:Color="#000000"/>
-   <Interior/>
-   <NumberFormat/>
-   <Protection/>
-  </Style>
-  <Style ss:ID="s62">
-   <NumberFormat ss:Format="Scientific"/>
-  </Style>
- </Styles>
- <Worksheet ss:Name="microscopes">
-  <Table ss:ExpandedColumnCount="16" ss:ExpandedRowCount="6" x:FullColumns="1"
-   x:FullRows="1" ss:DefaultRowHeight="15">
-   <Row>
-    <Cell><Data ss:Type="String">Syntax</Data></Cell>
-    <Cell><Data ss:Type="String">E0 / eV</Data></Cell>
-    <Cell><Data ss:Type="String">alpha / mrad</Data></Cell>
-    <Cell><Data ss:Type="String">beta / mrad</Data></Cell>
-    <Cell><Data ss:Type="String">pppc</Data></Cell>
-    <Cell><Data ss:Type="String">correlation_factor</Data></Cell>
-    <Cell><Data ss:Type="String">VOA conv</Data></Cell>
-    <Cell><Data ss:Type="String">EELS b1</Data></Cell>
-    <Cell><Data ss:Type="String">EELS b2</Data></Cell>
-    <Cell><Data ss:Type="String">EELS b100</Data></Cell>
-    <Cell><Data ss:Type="String">MADF offset</Data></Cell>
-    <Cell><Data ss:Type="String">MADF slope</Data></Cell>
-    <Cell><Data ss:Type="String">HADF offset</Data></Cell>
-    <Cell><Data ss:Type="String">HADF slope</Data></Cell>
-    <Cell><Data ss:Type="String">BF offset</Data></Cell>
-    <Cell><Data ss:Type="String">BF slope</Data></Cell>
-   </Row>
-   <Row>
-    <Cell><Data ss:Type="String">Default</Data></Cell>
-    <Cell ss:StyleID="s62"><Data ss:Type="Number">100000</Data></Cell>
-    <Cell><Data ss:Type="Number">20</Data></Cell>
-    <Cell><Data ss:Type="Number">13</Data></Cell>
-    <Cell><Data ss:Type="Number">1</Data></Cell>
-    <Cell><Data ss:Type="Number">1</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-   </Row>
-   <Row>
-    <Cell><Data ss:Type="Number">501</Data></Cell>
-    <Cell ss:StyleID="s62"><Data ss:Type="Number">100000</Data></Cell>
-    <Cell><Data ss:Type="Number">20</Data></Cell>
-    <Cell><Data ss:Type="Number">13</Data></Cell>
-    <Cell><Data ss:Type="Number">1</Data></Cell>
-    <Cell><Data ss:Type="Number">1</Data></Cell>
-    <Cell ss:StyleID="s62"><Data ss:Type="Number">1580000</Data></Cell>
-    <Cell><Data ss:Type="Number">0.05</Data></Cell>
-    <Cell><Data ss:Type="Number">0.1</Data></Cell>
-    <Cell><Data ss:Type="Number">0.2</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-   </Row>
-   <Row>
-    <Cell><Data ss:Type="String">UltraStem 60</Data></Cell>
-    <Cell ss:StyleID="s62"><Data ss:Type="Number">60000</Data></Cell>
-    <Cell><Data ss:Type="Number">30</Data></Cell>
-    <Cell><Data ss:Type="Number">50</Data></Cell>
-    <Cell><Data ss:Type="Number">1</Data></Cell>
-    <Cell><Data ss:Type="Number">1</Data></Cell>
-    <Cell ss:StyleID="s62"><Data ss:Type="Number">17900000</Data></Cell>
-    <Cell><Data ss:Type="Number">0.2</Data></Cell>
-    <Cell><Data ss:Type="Number">0.45</Data></Cell>
-    <Cell><Data ss:Type="Number">0.9</Data></Cell>
-    <Cell><Data ss:Type="Number">1.3829999999999999E-3</Data></Cell>
-    <Cell ss:StyleID="s62"><Data ss:Type="Number">4.0400000000000003E-6</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-   </Row>
-   <Row>
-    <Cell><Data ss:Type="String">UltraStem 100</Data></Cell>
-    <Cell ss:StyleID="s62"><Data ss:Type="Number">100000</Data></Cell>
-    <Cell><Data ss:Type="Number">30</Data></Cell>
-    <Cell><Data ss:Type="Number">50</Data></Cell>
-    <Cell><Data ss:Type="Number">1</Data></Cell>
-    <Cell><Data ss:Type="Number">1</Data></Cell>
-    <Cell ss:StyleID="s62"><Data ss:Type="Number">6240000</Data></Cell>
-    <Cell><Data ss:Type="Number">0.45</Data></Cell>
-    <Cell><Data ss:Type="Number">1</Data></Cell>
-    <Cell><Data ss:Type="Number">2</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-   </Row>
-   <Row>
-    <Cell><Data ss:Type="String">Libra200</Data></Cell>
-    <Cell ss:StyleID="s62"><Data ss:Type="Number">200000</Data></Cell>
-    <Cell><Data ss:Type="Number">10</Data></Cell>
-    <Cell><Data ss:Type="Number">15</Data></Cell>
-    <Cell><Data ss:Type="Number">1</Data></Cell>
-    <Cell><Data ss:Type="Number">1</Data></Cell>
-    <Cell><Data ss:Type="Number">6241509.6469999999</Data></Cell>
-    <Cell><Data ss:Type="Number">6.3399999999999998E-2</Data></Cell>
-    <Cell><Data ss:Type="Number">6.3399999999999998E-2</Data></Cell>
-    <Cell><Data ss:Type="Number">6.3399999999999998E-2</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-    <Cell><Data ss:Type="Number">0</Data></Cell>
-   </Row>
-  </Table>
-  <WorksheetOptions xmlns="urn:schemas-microsoft-com:office:excel">
-   <PageSetup>
-    <Header x:Margin="0.3"/>
-    <Footer x:Margin="0.3"/>
-    <PageMargins x:Bottom="0.75" x:Left="0.7" x:Right="0.7" x:Top="0.75"/>
-   </PageSetup>
-   <Selected/>
-   <Panes>
-    <Pane>
-     <Number>3</Number>
-     <ActiveCol>3</ActiveCol>
-    </Pane>
-   </Panes>
-   <ProtectObjects>False</ProtectObjects>
-   <ProtectScenarios>False</ProtectScenarios>
-  </WorksheetOptions>
- </Worksheet>
-</Workbook>

pyTEMlib/data/path.txt

@@ -1 +0,0 @@
-C:/Users/nyd/Documents/2012-Exp/Matt-ref

pyTEMlib/defaults_parser.py

@@ -1,86 +0,0 @@
-# Gleaned from
-# Copyright © 2007 Francisco Javier de la Peña
-# file of EELSLab.
-#
-
-import os
-import tarfile
-
-from pyTEMlib.config_dir import config_path, os_name, data_path
-
-defaults_file = os.path.join(config_path, 'TEMlibrc')
-bool_keys = ['fs_state', 'synchronize_cl_with_ll', 'plot_on_load']
-str_keys = ['microscope', 'GOS_dir', 'fitter', 'file_format']
-float_keys = ['fs_emax', 'preedge_safe_window_width', 
-'knots_factor', 'min_distance_between_edges_for_fine_structure' ]
-
-Gos_file = os.path.join(data_path, 'GOS.tar.gz')
-f = open(defaults_file, 'r')
-defaults_dict = {}
-for line in f:
-    if line[0] != "#":
-        line_list = line.split()
-        if line_list != []:
-            if line_list[0] in float_keys:
-                key, value = line_list
-                defaults_dict[key] = float(value)
-            elif line_list[0] in str_keys:
-                key =  line_list[0]
-                
-                for i in range(1,len(line_list)):
-                    if i > 1:
-                        value = value+' '+line_list[i]
-                    else:
-                        value = line_list[i]
-                    
-                defaults_dict[key] = value
-            elif line_list[0] in bool_keys:
-                key, value = line_list[0:2]
-                defaults_dict[key] = bool(int(value))
-f.close()
-
-if defaults_dict['GOS_dir'] == 'None':
-    if os_name == 'windows':
-        # If DM is installed, use the GOS tables from the default installation
-        # location in windows
-        program_files = os.environ['PROGRAMFILES']
-        
-        gos = '\Gatan\EELS Reference Data\H-S GOS Table\ ' 
-        gos_path ='C:\ProgramData\Gatan\EELS Reference Data\H-S GOS Tables'
-
-        
-        
-        # Check whether it is in the (x86) Program folder of windows 7
-        if os.path.isdir(gos_path) is False:
-            program_files += ' (x86)'
-            gos_path = os.path.join(program_files, gos)
-            if os.path.isdir(gos_path) is False:
-                # Else, use the default location in the .eelslab folder
-                gos_path = os.path.join(config_path, 'GOS')
-    else:
-        gos_path = os.path.join(config_path, 'GOS')
-    
-    if os.path.isdir(gos_path) is False and os.path.isfile(Gos_file) is True:
-        #messages.alert("Installing the GOS files in: %s" % gos_path) 
-        tar = tarfile.open(Gos_file)
-        os.mkdir(gos_path)
-        tar.extractall(gos_path)
-    if os.path.isdir(gos_path):
-        defaults_dict['GOS_dir'] = gos_path
-        
-class Defaults:
-    pass
-
-defaults = Defaults()
-defaults.__dict__ = defaults_dict
-
-
-# Install the tutorial in the home folder if the file is available
-tutorial_file = os.path.join(data_path, 'tutorial.tar.gz')
-tutorial_directory = os.path.expanduser('~/eelslab_tutorial')
-if os.path.isfile(tutorial_file) is True:
-    if os.path.isdir(tutorial_directory) is False:
-        #messages.alert("Installing the tutorial in: %s" % tutorial_directory) 
-        tar = tarfile.open(tutorial_file)
-        os.mkdir(tutorial_directory)
-        tar.extractall(tutorial_directory)