pyTEMlib 0.2020.11.0__py3-none-any.whl → 0.2024.8.4__py3-none-any.whl

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  1. pyTEMlib/__init__.py +11 -11
  2. pyTEMlib/animation.py +631 -0
  3. pyTEMlib/atom_tools.py +240 -222
  4. pyTEMlib/config_dir.py +57 -29
  5. pyTEMlib/core_loss_widget.py +658 -0
  6. pyTEMlib/crystal_tools.py +1255 -0
  7. pyTEMlib/diffraction_plot.py +756 -0
  8. pyTEMlib/dynamic_scattering.py +293 -0
  9. pyTEMlib/eds_tools.py +609 -0
  10. pyTEMlib/eels_dialog.py +749 -486
  11. pyTEMlib/{interactive_eels.py → eels_dialog_utilities.py} +1199 -1524
  12. pyTEMlib/eels_tools.py +2031 -1731
  13. pyTEMlib/file_tools.py +1276 -491
  14. pyTEMlib/file_tools_qt.py +193 -0
  15. pyTEMlib/graph_tools.py +1166 -450
  16. pyTEMlib/graph_viz.py +449 -0
  17. pyTEMlib/image_dialog.py +158 -0
  18. pyTEMlib/image_dlg.py +146 -0
  19. pyTEMlib/image_tools.py +1399 -956
  20. pyTEMlib/info_widget.py +933 -0
  21. pyTEMlib/interactive_image.py +1 -0
  22. pyTEMlib/kinematic_scattering.py +1196 -0
  23. pyTEMlib/low_loss_widget.py +176 -0
  24. pyTEMlib/microscope.py +61 -78
  25. pyTEMlib/peak_dialog.py +1047 -350
  26. pyTEMlib/peak_dlg.py +286 -248
  27. pyTEMlib/probe_tools.py +653 -202
  28. pyTEMlib/sidpy_tools.py +153 -129
  29. pyTEMlib/simulation_tools.py +104 -87
  30. pyTEMlib/version.py +6 -3
  31. pyTEMlib/xrpa_x_sections.py +20972 -0
  32. {pyTEMlib-0.2020.11.0.dist-info → pyTEMlib-0.2024.8.4.dist-info}/LICENSE +21 -21
  33. pyTEMlib-0.2024.8.4.dist-info/METADATA +93 -0
  34. pyTEMlib-0.2024.8.4.dist-info/RECORD +37 -0
  35. {pyTEMlib-0.2020.11.0.dist-info → pyTEMlib-0.2024.8.4.dist-info}/WHEEL +6 -5
  36. {pyTEMlib-0.2020.11.0.dist-info → pyTEMlib-0.2024.8.4.dist-info}/entry_points.txt +0 -1
  37. pyTEMlib/KinsCat.py +0 -2685
  38. pyTEMlib/__version__.py +0 -2
  39. pyTEMlib/data/TEMlibrc +0 -68
  40. pyTEMlib/data/edges_db.csv +0 -189
  41. pyTEMlib/data/edges_db.pkl +0 -0
  42. pyTEMlib/data/fparam.txt +0 -103
  43. pyTEMlib/data/microscopes.csv +0 -7
  44. pyTEMlib/data/microscopes.xml +0 -167
  45. pyTEMlib/data/path.txt +0 -1
  46. pyTEMlib/defaults_parser.py +0 -86
  47. pyTEMlib/dm3_reader.py +0 -609
  48. pyTEMlib/edges_db.py +0 -76
  49. pyTEMlib/eels_dlg.py +0 -240
  50. pyTEMlib/hdf_utils.py +0 -481
  51. pyTEMlib/image_tools1.py +0 -2194
  52. pyTEMlib/info_dialog.py +0 -227
  53. pyTEMlib/info_dlg.py +0 -205
  54. pyTEMlib/nion_reader.py +0 -293
  55. pyTEMlib/nsi_reader.py +0 -165
  56. pyTEMlib/structure_tools.py +0 -316
  57. pyTEMlib-0.2020.11.0.dist-info/METADATA +0 -20
  58. pyTEMlib-0.2020.11.0.dist-info/RECORD +0 -42
  59. {pyTEMlib-0.2020.11.0.dist-info → pyTEMlib-0.2024.8.4.dist-info}/top_level.txt +0 -0
@@ -1,21 +1,21 @@
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- MIT License
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-
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- Copyright (c) 2019 Gerd Duscher
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-
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- Permission is hereby granted, free of charge, to any person obtaining a copy
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- of this software and associated documentation files (the "Software"), to deal
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- in the Software without restriction, including without limitation the rights
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- to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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- copies of the Software, and to permit persons to whom the Software is
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- furnished to do so, subject to the following conditions:
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-
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- The above copyright notice and this permission notice shall be included in all
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- copies or substantial portions of the Software.
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-
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- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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- IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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- FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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- AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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- LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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- SOFTWARE.
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+ MIT License
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+
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+ Copyright (c) 2024, Gerd
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.
@@ -0,0 +1,93 @@
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+ Metadata-Version: 2.1
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+ Name: pyTEMlib
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+ Version: 0.2024.8.4
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+ Summary: pyTEM: TEM Data Quantification library through a model-based approach
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+ Home-page: https://pycroscopy.github.io/pyTEMlib/about.html
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+ Author: Gerd Duscher
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+ Author-email: gduscher@utk.edu
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+ License: MIT
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+ Keywords: imaging,spectra,transmission,electron,microscopy,scientific,scanning,eels,visualization,processing,storage,hdf5,diffraction
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+ Platform: Linux
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+ Platform: Mac OSX
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+ Platform: Windows 11/10
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+ Classifier: Development Status :: 2 - Pre-Alpha
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+ Classifier: Environment :: Console
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: License :: OSI Approved :: MIT License
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+ Classifier: Natural Language :: English
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+ Classifier: Operating System :: OS Independent
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+ Classifier: Programming Language :: Cython
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Programming Language :: Python :: 3.8
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+ Classifier: Programming Language :: Python :: 3.9
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+ Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: Implementation :: CPython
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+ Classifier: Topic :: Scientific/Engineering :: Information Analysis
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+ License-File: LICENSE
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+ Requires-Dist: scipy
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+ Requires-Dist: numpy
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+ Requires-Dist: pillow
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+ Requires-Dist: ase
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+ Requires-Dist: tqdm
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+ Requires-Dist: plotly
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+ Requires-Dist: pandas
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+ Requires-Dist: requests
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+ Requires-Dist: lxml
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+ Requires-Dist: ipympl
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+ Requires-Dist: build
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+ Requires-Dist: spglib
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+ Requires-Dist: scikit-image
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+ Requires-Dist: scikit-learn
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+ Requires-Dist: pyNSID >=0.0.7
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+ Requires-Dist: sidpy >=0.12.1
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+ Requires-Dist: SciFiReaders >=0.0.8
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+
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+ pyTEMlib
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+ ========
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+
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+ .. image:: https://github.com/pycroscopy/pyTEMlib/workflows/build/badge.svg?branch=master
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+ :target: https://github.com/pycroscopy/pyTEMlib/actions?query=workflow%3Abuild
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+ :alt: GitHub Actions
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+
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+ .. image:: https://img.shields.io/pypi/v/pyTEMlib.svg
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+ :target: https://pypi.org/project/pyTEMlib/
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+ :alt: PyPI
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+
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+ .. image:: https://img.shields.io/conda/vn/conda-forge/pyTEMlib.svg
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+ :target: https://github.com/conda-forge/pyTEMlib-feedstock
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+ :alt: conda-forge
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+
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+ .. image:: https://codecov.io/gh/pycroscopy/pyTEMlib/branch/master/graph/badge.svg?token=
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+ :target: https://codecov.io/gh/pycroscopy/pyTEMlib
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+ :alt: CodeCov
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+
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+ .. image:: https://img.shields.io/pypi/l/pyTEMlib.svg
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+ :target: https://pypi.org/project/pyTEMlib/
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+ :alt: License
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+
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+ .. image:: http://pepy.tech/badge/pyTEMlib
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+ :target: http://pepy.tech/project/pyTEMlib
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+ :alt: Downloads
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+
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+ .. image:: https://zenodo.org/badge/138171750.svg
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+ :target: https://zenodo.org/badge/latestdoi/138171750
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+ :alt: DOI
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+
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+ pyTEMlib is a package to read and process various kind of data acquired with a (scanning) transmission electron microscope (STEM).
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+
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+ The package is written in pure python and depends on various other libraries.
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+
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+ All data, user input, and results are stored as `NSID-formatted <https://pycroscopy.github.io/pyNSID/nsid.html>`_ HDF5 files.
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+
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+ The data are all presented as `sidpy.Dataset <https://pycroscopy.github.io/sidpy/notebooks/00_basic_usage/create_dataset.html>`_ objects
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+
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+ Install pyTEMlib via pip as:
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+
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+ ``python3 -m pip install pyTEMlib``
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+
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+ or via conda:
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+
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+ ``conda install pyTEMlib -c conda-forge``
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+
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+ These installation options are also available in the `example notebooks <https://github.com/pycroscopy/pyTEMlib/notebooks>`_
@@ -0,0 +1,37 @@
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+ pyTEMlib/__init__.py,sha256=nEN93amIEoZxO7rJgN71ABeCoXrnmaywBbE97l5lPio,178
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+ pyTEMlib/animation.py,sha256=oPxbTuy8LfdH2mOOgm9Q40ArFAJmXM_58UV97ptcNAY,25187
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+ pyTEMlib/atom_tools.py,sha256=ViO4ZZZoCZ_Cp2KijiqKKOiQhGOWnye45T0rsiPhf4I,7314
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+ pyTEMlib/config_dir.py,sha256=4evlo9P2Yht-AnqaLI-WweLjDQcislbAP3I7P7EZsPU,2085
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+ pyTEMlib/core_loss_widget.py,sha256=BPGGNcYkdiX3pIfe600ERVAJjUHw5C2BA7idroP1pgU,29746
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+ pyTEMlib/crystal_tools.py,sha256=g4OXyvd5NLw7vaXhjDP3P6VZpVV6eiyuPn8MdgR2amI,61652
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+ pyTEMlib/diffraction_plot.py,sha256=pM5d3bdBGa8LlPZ5lw8sLT94mlYTXELxPLv-jUP2FWY,27959
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+ pyTEMlib/dynamic_scattering.py,sha256=O9MxnxfndWJ2VhQRjksKNQ4yY7y-gN_hitRQ4Qox4ns,9472
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+ pyTEMlib/eds_tools.py,sha256=Ilof2Cars-1ILXx5g2RsU2G4BgrPwjOHgQ7-OabmbrU,28000
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+ pyTEMlib/eels_dialog.py,sha256=oWLivCQ96Fq0tj52wbfs-5qKccUSWk2k1iP2TVneXZA,32379
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+ pyTEMlib/file_tools.py,sha256=UScJenVk73MZUW-laoKymnO27eCUC0vlRxxlQ4Kq2Hg,46923
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+ pyTEMlib/file_tools_qt.py,sha256=tLZACS4JyGH_AOzNR_SGAhjA01y4VJB261opPhGMlm8,7223
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+ pyTEMlib/graph_tools.py,sha256=iu0Y2hIPU6CkQHQEh-dI1vKnUHnSNXx4-CXs2M-1Sr8,44097
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+ pyTEMlib/info_widget.py,sha256=wd1F6UDcLMsWEg1DHHVPa1P7_MRGv8iLOUjRsYkZOQY,46453
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+ pyTEMlib/interactive_image.py,sha256=5PwypcA1OjLAD-fi8bmWWFHuOjdIPVY9Dh59V24WuDA,34
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+ pyTEMlib/kinematic_scattering.py,sha256=CUdJnclkok7d8qm_jDUF92MVHrmaTeMkKdvxxB6AqvA,43309
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+ pyTEMlib/low_loss_widget.py,sha256=nSU6-pu7gP8ch61w2wpImNNIuo_3bBN1HAB3UVlEJoQ,9043
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+ pyTEMlib/microscope.py,sha256=iigUF1UImHEfmL2wqEBBj3aNRgEYouDbIln8VCo4_KM,1545
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+ pyTEMlib/peak_dialog.py,sha256=-HhgmoscfJMme9N495hDzfniYwuhn7iBzsDwZOOhTd4,48260
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+ pyTEMlib/peak_dlg.py,sha256=qcjcnhwpGa4jBCeXzwQz9sCyX-tHsLLQ67ToqfKOiQY,11550
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+ pyTEMlib/probe_tools.py,sha256=8tPQuANClLsGAKnZo6Vo4gNIGKfyDR6WUMO3dXcm_4k,27177
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+ pyTEMlib/sidpy_tools.py,sha256=0oIx-qMtEmcZmLazQKW19dd-KoxyY3B15aIeMcyHA8E,4878
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+ pyTEMlib/simulation_tools.py,sha256=RmegD5TpQMU68uASvzZWVplAqs7bM5KkF6bWDWLjyc0,2799
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+ pyTEMlib/version.py,sha256=iMtHoOYocc73hDuoRv_v4bwtxmm_c4kBFgzYDxaHxIc,94
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+ pyTEMlib/xrpa_x_sections.py,sha256=m4gaH7gaJiNi-CsIT9aKoH4fB6MQIAe876kxEmzSebI,1825392
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+ pyTEMlib-0.2024.8.4.dist-info/LICENSE,sha256=7HdBF6SXIBd38bHOKkQd4DYR1KV-OYm9mwB16fM-984,1062
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+ pyTEMlib-0.2024.8.4.dist-info/METADATA,sha256=tHOUju54tXl-Z5zaMB3LBZCbQURew9GzhB5MH0Z0cg0,3325
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+ pyTEMlib-0.2024.8.4.dist-info/WHEEL,sha256=WDDPHYzpiOIm6GP1C2_8y8W6q16ICddAgOHlhTje9Qc,109
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+ pyTEMlib-0.2024.8.4.dist-info/entry_points.txt,sha256=zn2yO1IWTutI3c7C9e3GdARCvm43JURoOhqQ8YylV4Y,43
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+ pyTEMlib-0.2024.8.4.dist-info/top_level.txt,sha256=rPLVH0UJxrPSPgSoKScTjL1K_X69JFzsYYnDnYTYIlU,9
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+ pyTEMlib-0.2024.8.4.dist-info/RECORD,,
@@ -1,5 +1,6 @@
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- Wheel-Version: 1.0
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- Generator: bdist_wheel (0.35.1)
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- Root-Is-Purelib: true
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- Tag: py3-none-any
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-
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+ Wheel-Version: 1.0
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+ Generator: setuptools (74.0.0)
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+ Root-Is-Purelib: true
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+ Tag: py2-none-any
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+ Tag: py3-none-any
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+
@@ -1,3 +1,2 @@
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  [console_scripts]
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  pyTEMlib = pyTEMlib:main
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-