pyEQL 1.4.0rc9__cp311-cp311-win_amd64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pyEQL/__init__.py +50 -0
- pyEQL/_phreeqc.cp311-win_amd64.pyd +0 -0
- pyEQL/activity_correction.py +879 -0
- pyEQL/database/geothermal.dat +5693 -0
- pyEQL/database/llnl.dat +19305 -0
- pyEQL/database/phreeqc_license.txt +54 -0
- pyEQL/database/pyeql_db.json +35607 -0
- pyEQL/engines.py +1153 -0
- pyEQL/equilibrium.py +227 -0
- pyEQL/functions.py +281 -0
- pyEQL/phreeqc/__init__.py +5 -0
- pyEQL/phreeqc/bindings.cpp +84 -0
- pyEQL/phreeqc/core.py +239 -0
- pyEQL/phreeqc/database/Amm.dat +1968 -0
- pyEQL/phreeqc/database/CMakeLists.txt +32 -0
- pyEQL/phreeqc/database/ColdChem.dat +267 -0
- pyEQL/phreeqc/database/Concrete_PHR.dat +158 -0
- pyEQL/phreeqc/database/Concrete_PZ.dat +195 -0
- pyEQL/phreeqc/database/Kinec.v2.dat +12039 -0
- pyEQL/phreeqc/database/Kinec_v3.dat +12159 -0
- pyEQL/phreeqc/database/Makefile.am +28 -0
- pyEQL/phreeqc/database/Makefile.in +530 -0
- pyEQL/phreeqc/database/PHREEQC_ThermoddemV1.10_15Dec2020.dat +12965 -0
- pyEQL/phreeqc/database/Tipping_Hurley.dat +4137 -0
- pyEQL/phreeqc/database/__init__.py +0 -0
- pyEQL/phreeqc/database/core10.dat +6824 -0
- pyEQL/phreeqc/database/frezchem.dat +634 -0
- pyEQL/phreeqc/database/iso.dat +7235 -0
- pyEQL/phreeqc/database/llnl.dat +19310 -0
- pyEQL/phreeqc/database/minteq.dat +5654 -0
- pyEQL/phreeqc/database/minteq.v4.dat +13212 -0
- pyEQL/phreeqc/database/phreeqc.dat +1972 -0
- pyEQL/phreeqc/database/phreeqc_rates.dat +3158 -0
- pyEQL/phreeqc/database/pitzer.dat +1044 -0
- pyEQL/phreeqc/database/sit.dat +14348 -0
- pyEQL/phreeqc/database/wateq4f.dat +4036 -0
- pyEQL/phreeqc/ext/README.md +10 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/CMakeLists.txt +476 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/INSTALL +302 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/IPhreeqc.rc +61 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/IPhreeqcConfig.cmake.in +4 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/Makefile.am +8 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/Makefile.in +816 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/aclocal.m4 +1217 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/ALL_BUILD.vcxproj +185 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/ALL_BUILD.vcxproj.filters +8 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CMakeFiles/generate.stamp +1 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CMakeFiles/generate.stamp.depend +79 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/CTestTestfile.cmake +6 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Continuous.vcxproj +240 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Continuous.vcxproj.filters +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/DartConfiguration.tcl +109 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Experimental.vcxproj +240 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Experimental.vcxproj.filters +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/INSTALL.vcxproj +209 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/INSTALL.vcxproj.filters +13 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/CSelectedOutput.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Dictionary.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ExchComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Exchange.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/GasComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/GasPhase.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.lib.recipe +11 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CL.command.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CL.read.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CL.write.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Cl.items.tlog +82 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CustomBuild.command.1.tlog +10 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CustomBuild.read.1.tlog +78 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/CustomBuild.write.1.tlog +2 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/IPhreeqc.lastbuildstate +2 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Lib-link.read.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Lib-link.write.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc.tlog/Lib.command.1.tlog +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqcLib.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/IPhreeqc_interface_F.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ISolution.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ISolutionComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Keywords.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/KineticsComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/NameDouble.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/NumKeyword.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PBasic.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PHRQ_base.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PHRQ_io.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PHRQ_io_output.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PPassemblage.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/PPassemblageComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Parser.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Phreeqc.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Pressure.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Reaction.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/ReadClass.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SS.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SSassemblage.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SScomp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SelectedOutput.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Serializer.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Solution.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SolutionIsotope.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/StorageBin.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/StorageBinList.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Surface.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SurfaceCharge.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/SurfaceComp.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/System.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Temperature.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Use.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/UserPunch.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Utils.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/Var.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/advection.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/basicsubs.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cl1.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cvdense.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cvode.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cxxKinetics.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/cxxMix.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/dense.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/dumper.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/gases.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/input.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/integrate.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/inverse.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/isotopes.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/kinetics.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/mainsubs.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/model.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/nvector.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/nvector_serial.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/parse.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/phqalloc.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/pitzer.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/pitzer_structures.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/prep.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/print.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/read.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/readtr.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/runner.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/sit.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/smalldense.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/spread.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/step.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/structures.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/sundialsmath.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/tally.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/tidy.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/transport.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.dir/Release/utilities.obj +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.sln +116 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.vcxproj +443 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/IPhreeqc.vcxproj.filters +456 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Nightly.vcxproj +240 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Nightly.vcxproj.filters +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/NightlyMemoryCheck.vcxproj +240 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/NightlyMemoryCheck.vcxproj.filters +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/Release/IPhreeqc.lib +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/build/cmake_install.cmake +40 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/ar-lib +270 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/compile +347 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/config.guess +1441 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/config.sub +1813 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/depcomp +791 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/install-sh +508 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/ltmain.sh +11156 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/missing +215 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/config/test-driver +148 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/configure +23867 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/configure.ac +136 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/Amm.dat +1968 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/CMakeLists.txt +32 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/ColdChem.dat +267 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/Concrete_PHR.dat +158 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/Concrete_PZ.dat +195 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/Kinec.v2.dat +12039 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/Kinec_v3.dat +12159 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/Makefile.am +28 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/Makefile.in +530 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/PHREEQC_ThermoddemV1.10_15Dec2020.dat +12965 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/Tipping_Hurley.dat +4137 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/core10.dat +6824 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/frezchem.dat +634 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/iso.dat +7235 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/llnl.dat +19310 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/minteq.dat +5654 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/minteq.v4.dat +13212 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/phreeqc.dat +1972 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/phreeqc_rates.dat +3158 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/pitzer.dat +1044 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/sit.dat +14348 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/database/wateq4f.dat +4036 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/CMakeLists.txt +35 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/IPhreeqc.pdf +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/Makefile.am +24 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/Makefile.in +545 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/NOTICE +51 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/Phreeqc_2_1999_manual.pdf +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/Phreeqc_3_2013_manual.pdf +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/README +428 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/RELEASE +7294 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/IPhreeqc_8h.html +5096 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/IPhreeqc_8h_source.html +389 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/IPhreeqc_8hpp.html +83 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/IPhreeqc_8hpp_source.html +478 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/Var_8h.html +318 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/Var_8h_source.html +200 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/bc_s.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/bdwn.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/classIPhreeqc.html +2274 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/classIPhreeqc.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/classIPhreeqcStop.html +69 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/classIPhreeqcStop.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/closed.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/dir_68267d1309a1af8e8297ef4c3efbcdba.html +68 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/doxygen.css +1440 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/doxygen.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/dynsections.js +97 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2blank.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2doc.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2folderclosed.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2folderopen.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2lastnode.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2link.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2mlastnode.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2mnode.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2node.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2plastnode.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2pnode.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2splitbar.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/ftv2vertline.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/index.html +58 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/jquery.js +31 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/nav_f.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/nav_g.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/nav_h.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/open.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/structVAR.html +143 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/sync_off.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/sync_on.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/tab_a.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/tab_b.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/tab_h.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/tab_s.png +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/html/tabs.css +60 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/doc/phreeqc3.chm +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/CMakeLists.txt +11 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/Makefile.am +88 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/Makefile.in +696 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/c/CMakeLists.txt +1 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/c/advect/CMakeLists.txt +35 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/c/advect/CMakeLists.txt.in +21 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/c/advect/README.txt +44 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/c/advect/advect.c +101 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/c/advect/ic +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/c/advect/phreeqc.dat +1579 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/CMakeLists.txt +10 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/README.txt +3 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/excel/CMakeLists.txt +9 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/excel/phreeqc.dat +1582 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/excel/runphreeqc.xls +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/excel/withcallback.xls +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/python/CMakeLists.txt +11 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/python/Gypsum.py +52 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/python/parallel_advect.py +465 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/python/phreeqc.dat +1582 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/python/pitzer.dat +790 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/com/python/wateq4f.dat +3846 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/cpp/CMakeLists.txt +1 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/cpp/advect/CMakeLists.txt +35 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/cpp/advect/CMakeLists.txt.in +20 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/cpp/advect/README.txt +45 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/cpp/advect/advect.cpp +110 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/cpp/advect/ic +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/cpp/advect/phreeqc.dat +1579 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/fortran/CMakeLists.txt +1 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/fortran/advect/CMakeLists.txt +44 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/fortran/advect/CMakeLists.txt.in +24 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/fortran/advect/README.txt +45 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/fortran/advect/advect.F90 +102 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/fortran/advect/ic +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/fortran/advect/phreeqc.dat +1579 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/using-cmake/CMakeLists.txt +26 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/using-cmake/CMakeLists.txt.in +20 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/using-cmake/README.txt +37 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/using-cmake/ex2 +26 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/using-cmake/main.cpp +20 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/using-cmake/phreeqc.dat +1837 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/examples/using-cmake/post-install.cmake.in +7 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/CMakeLists.txt +185 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/FileTest.cpp +171 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/FileTest.h +34 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/Makefile.am +18 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/Makefile.in +466 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/TestCVar.cpp +9 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/TestIPhreeqc.cpp +4901 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/TestIPhreeqcLib.cpp +4644 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/TestSelectedOutput.cpp +669 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/TestVar.cpp +10 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/conv_fail.in +11 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/dump +42 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/iso.dat +7231 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/kinn20140218 +349 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/missing_e.dat +1556 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/multi_punch +105 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/multi_punch_no_set +102 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/phreeqc.dat.90a6449 +1935 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/gtest/phreeqc.dat.old +1556 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/m4/libtool.m4 +8388 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/m4/ltoptions.m4 +437 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/m4/ltsugar.m4 +124 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/m4/ltversion.m4 +23 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/m4/lt~obsolete.m4 +99 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/resource.h +14 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/CSelectedOutput.cpp +401 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/CSelectedOutput.hxx +77 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/CVar.hxx +162 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/Debug.h +12 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/ErrorReporter.hxx +70 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/IPhreeqc.cpp +1889 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/IPhreeqc.f.inc +91 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/IPhreeqc.f90.inc +603 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/IPhreeqc.h +2182 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/IPhreeqc.hpp +1027 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/IPhreeqcCallbacks.h +19 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/IPhreeqcF.f +653 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/IPhreeqcLib.cpp +1098 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/IPhreeqc_interface.F90 +1283 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/IPhreeqc_interface_F.cpp +535 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/IPhreeqc_interface_F.h +162 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/Makefile.am +210 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/Makefile.in +1294 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/README.Fortran +17 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/Var.c +84 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/Var.h +152 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/Version.h +36 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/fimpl.h +282 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/fwrap.cpp +646 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/fwrap.h +163 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/fwrap1.cpp +24 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/fwrap2.cpp +24 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/fwrap3.cpp +24 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/fwrap4.cpp +24 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/fwrap5.cpp +24 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/fwrap6.cpp +25 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/fwrap7.cpp +25 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/fwrap8.cpp +24 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ChartHandler.cpp +225 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ChartHandler.h +59 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ChartObject.cpp +1382 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ChartObject.h +444 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/CurveObject.cpp +42 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/CurveObject.h +79 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Dictionary.cpp +41 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Dictionary.h +28 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ExchComp.cxx +398 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ExchComp.h +117 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Exchange.cxx +466 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Exchange.h +74 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Form1.h +1184 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Form1.resX +36 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/GasComp.cxx +265 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/GasComp.h +59 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/GasPhase.cxx +659 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/GasPhase.h +103 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ISolution.cxx +40 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ISolution.h +53 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ISolutionComp.cxx +202 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ISolutionComp.h +138 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/KineticsComp.cxx +318 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/KineticsComp.h +81 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/NA.h +1 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/NameDouble.cxx +537 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/NameDouble.h +66 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/NumKeyword.cxx +190 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/NumKeyword.h +67 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/PBasic.cpp +8350 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/PBasic.h +572 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/PHRQ_io_output.cpp +411 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/PPassemblage.cxx +375 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/PPassemblage.h +70 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/PPassemblageComp.cxx +441 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/PPassemblageComp.h +83 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Phreeqc.cpp +2087 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Phreeqc.h +2164 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/PhreeqcKeywords/Keywords.cpp +242 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/PhreeqcKeywords/Keywords.h +104 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Pressure.cxx +417 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Pressure.h +43 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Reaction.cxx +284 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Reaction.h +57 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ReadClass.cxx +1150 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SS.cxx +609 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SS.h +128 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SSassemblage.cxx +317 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SSassemblage.h +59 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SScomp.cxx +297 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SScomp.h +66 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SelectedOutput.cpp +115 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SelectedOutput.h +209 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Serializer.cxx +213 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Serializer.h +42 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Solution.cxx +1795 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Solution.h +154 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SolutionIsotope.cxx +333 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SolutionIsotope.h +85 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBin.cxx +1507 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBin.h +141 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBinList.cpp +358 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/StorageBinList.h +81 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Surface.cxx +837 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Surface.h +108 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceCharge.cxx +617 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceCharge.h +137 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceComp.cxx +509 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/SurfaceComp.h +70 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/System.cxx +103 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/System.h +89 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Temperature.cxx +423 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Temperature.h +42 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Use.cpp +78 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/Use.h +159 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/UserPunch.cpp +32 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/UserPunch.h +39 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/ZedGraph.dll +0 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/advection.cpp +140 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/basicsubs.cpp +4333 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cl1.cpp +881 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_base.cxx +117 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_base.h +48 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_exports.h +20 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_io.cpp +914 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/PHRQ_io.h +207 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Parser.cxx +1331 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Parser.h +310 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Utils.cxx +263 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/Utils.h +29 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/common/phrqtype.h +18 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvdense.cpp +566 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvdense.h +267 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvode.cpp +3939 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cvode.h +940 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxKinetics.cxx +617 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxKinetics.h +78 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxMix.cxx +154 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/cxxMix.h +58 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dense.cpp +175 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dense.h +341 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dumper.cpp +277 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/dumper.h +60 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/gases.cpp +748 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/global_structures.h +1672 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/input.cpp +133 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/integrate.cpp +1219 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/inverse.cpp +5135 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/isotopes.cpp +1813 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/kinetics.cpp +3180 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/mainsubs.cpp +2320 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/model.cpp +5843 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector.cpp +272 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector.h +485 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector_serial.cpp +1032 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/nvector_serial.h +369 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/parse.cpp +1044 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/phqalloc.cpp +316 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/phqalloc.h +47 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/pitzer.cpp +2709 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/pitzer_structures.cpp +225 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/prep.cpp +6267 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/print.cpp +3673 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/read.cpp +10245 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/readtr.cpp +1495 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/runner.cpp +158 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/runner.h +33 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sit.cpp +1684 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/smalldense.cpp +324 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/smalldense.h +261 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/spread.cpp +1309 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/step.cpp +1566 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/structures.cpp +3381 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialsmath.cpp +133 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialsmath.h +162 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/sundialstypes.h +183 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/tally.cpp +1288 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/tidy.cpp +5600 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/transport.cpp +6403 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/phreeqcpp/utilities.cpp +1339 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/src/thread.h +64 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/CMakeLists.txt +133 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/Makefile.am +45 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/Makefile.in +1128 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/ex2.in +26 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main.f90 +31 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main77.f +6 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/main_fortran.cxx +8 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/phreeqc.dat.in +1556 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_c.c +148 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_cxx.cxx +152 -0
- pyEQL/phreeqc/ext/iphreeqc-3.8.6-17100/tests/test_f90.F90 +328 -0
- pyEQL/phreeqc/iphreeqc_wrapper.cpp +75 -0
- pyEQL/phreeqc/solution.py +74 -0
- pyEQL/phreeqc/var.py +50 -0
- pyEQL/presets/Ringers lactate.yaml +20 -0
- pyEQL/presets/__init__.py +17 -0
- pyEQL/presets/normal saline.yaml +17 -0
- pyEQL/presets/rainwater.yaml +17 -0
- pyEQL/presets/seawater.yaml +29 -0
- pyEQL/presets/urine.yaml +26 -0
- pyEQL/presets/wastewater.yaml +21 -0
- pyEQL/py.typed +0 -0
- pyEQL/salt_ion_match.py +112 -0
- pyEQL/solute.py +163 -0
- pyEQL/solution.py +2714 -0
- pyEQL/utils.py +237 -0
- pyeql-1.4.0rc9.dist-info/METADATA +130 -0
- pyeql-1.4.0rc9.dist-info/RECORD +519 -0
- pyeql-1.4.0rc9.dist-info/WHEEL +5 -0
- pyeql-1.4.0rc9.dist-info/licenses/AUTHORS.md +21 -0
- pyeql-1.4.0rc9.dist-info/licenses/LICENSE.txt +20 -0
|
@@ -0,0 +1,2709 @@
|
|
|
1
|
+
#include "Phreeqc.h"
|
|
2
|
+
#include "phqalloc.h"
|
|
3
|
+
#include "Exchange.h"
|
|
4
|
+
#include "Solution.h"
|
|
5
|
+
#define PITZER_LISTS
|
|
6
|
+
#define PITZER
|
|
7
|
+
|
|
8
|
+
#if defined(PHREEQCI_GUI)
|
|
9
|
+
#ifdef _DEBUG
|
|
10
|
+
#define new DEBUG_NEW
|
|
11
|
+
#undef THIS_FILE
|
|
12
|
+
static char THIS_FILE[] = __FILE__;
|
|
13
|
+
#endif
|
|
14
|
+
#endif
|
|
15
|
+
|
|
16
|
+
/* ---------------------------------------------------------------------- */
|
|
17
|
+
int Phreeqc::
|
|
18
|
+
pitzer_init(void)
|
|
19
|
+
/* ---------------------------------------------------------------------- */
|
|
20
|
+
{
|
|
21
|
+
int i;
|
|
22
|
+
/*
|
|
23
|
+
* Initialization for pitzer
|
|
24
|
+
*/
|
|
25
|
+
pitzer_model = FALSE;
|
|
26
|
+
use_etheta = TRUE;
|
|
27
|
+
pitz_params.clear();
|
|
28
|
+
theta_params.clear();
|
|
29
|
+
|
|
30
|
+
ICON = TRUE;
|
|
31
|
+
OTEMP = -100.;
|
|
32
|
+
OPRESS = -100.;
|
|
33
|
+
for (i = 0; i < 23; i++)
|
|
34
|
+
{
|
|
35
|
+
BK[i] = 0.0;
|
|
36
|
+
DK[i] = 0.0;
|
|
37
|
+
}
|
|
38
|
+
pitzer_pe = FALSE;
|
|
39
|
+
VP = 0;
|
|
40
|
+
DW0 = 0;
|
|
41
|
+
return OK;
|
|
42
|
+
}
|
|
43
|
+
|
|
44
|
+
/* ---------------------------------------------------------------------- */
|
|
45
|
+
int Phreeqc::
|
|
46
|
+
pitzer_tidy(void)
|
|
47
|
+
/* ---------------------------------------------------------------------- */
|
|
48
|
+
{
|
|
49
|
+
/*
|
|
50
|
+
* Make lists of species for cations, anions, neutral
|
|
51
|
+
*/
|
|
52
|
+
const char *string1, *string2;
|
|
53
|
+
int i, j, order;
|
|
54
|
+
int i0, i1, i2;
|
|
55
|
+
//int count_pos, count_neg, count_neut, count[3], jj;
|
|
56
|
+
int count_neut, count[3], jj;
|
|
57
|
+
LDBLE z0, z1;
|
|
58
|
+
class pitz_param *pzp_ptr;
|
|
59
|
+
class theta_param *theta_param_ptr;
|
|
60
|
+
/*
|
|
61
|
+
* Ensure new parameters are calculated
|
|
62
|
+
*/
|
|
63
|
+
OTEMP = -100.;
|
|
64
|
+
OPRESS = -100.;
|
|
65
|
+
/*
|
|
66
|
+
* allocate pointers to species structures
|
|
67
|
+
*/
|
|
68
|
+
spec.clear();
|
|
69
|
+
spec.resize(3 * s.size(), NULL);
|
|
70
|
+
cations = &spec[0];
|
|
71
|
+
neutrals = &(spec[s.size()]);
|
|
72
|
+
anions = &(spec[2 * s.size()]);
|
|
73
|
+
MAXCATIONS = (int)s.size();
|
|
74
|
+
FIRSTANION = 2 * (int)s.size();
|
|
75
|
+
MAXNEUTRAL = (int)s.size();
|
|
76
|
+
count_cations = 0;
|
|
77
|
+
count_anions = 0;
|
|
78
|
+
count_neutrals = 0;
|
|
79
|
+
if (itmax < 200)
|
|
80
|
+
itmax = 200;
|
|
81
|
+
/*
|
|
82
|
+
* allocate other arrays for Pitzer
|
|
83
|
+
*/
|
|
84
|
+
IPRSNT.resize(3 * s.size());
|
|
85
|
+
M.resize(3 * s.size());
|
|
86
|
+
LGAMMA.resize(3 * s.size());
|
|
87
|
+
|
|
88
|
+
for (i = 0; i < (int)s.size(); i++)
|
|
89
|
+
{
|
|
90
|
+
if (s[i] == s_eminus)
|
|
91
|
+
continue;
|
|
92
|
+
if (s[i] == s_h2o)
|
|
93
|
+
continue;
|
|
94
|
+
if (s[i]->type == EX || s[i]->type == SURF)
|
|
95
|
+
continue;
|
|
96
|
+
if (s[i]->z < -.001)
|
|
97
|
+
{
|
|
98
|
+
anions[count_anions++] = s[i];
|
|
99
|
+
}
|
|
100
|
+
else if (s[i]->z > .001)
|
|
101
|
+
{
|
|
102
|
+
cations[count_cations++] = s[i];
|
|
103
|
+
}
|
|
104
|
+
else
|
|
105
|
+
{
|
|
106
|
+
neutrals[count_neutrals++] = s[i];
|
|
107
|
+
}
|
|
108
|
+
}
|
|
109
|
+
/*
|
|
110
|
+
* Add etheta to parameter list in case theta not defined for
|
|
111
|
+
* cation-cation or anion-anion pair
|
|
112
|
+
* Remove old TYPE_ETHETA definitions
|
|
113
|
+
*/
|
|
114
|
+
|
|
115
|
+
std::vector<pitz_param*> pitz_params_temp = pitz_params;
|
|
116
|
+
pitz_params.clear();
|
|
117
|
+
|
|
118
|
+
for (i = 0; i < (int)pitz_params_temp.size(); i++)
|
|
119
|
+
{
|
|
120
|
+
if (pitz_params_temp[i]->type == TYPE_ETHETA)
|
|
121
|
+
{
|
|
122
|
+
delete pitz_params_temp[i];
|
|
123
|
+
}
|
|
124
|
+
else
|
|
125
|
+
{
|
|
126
|
+
pitz_params.push_back(pitz_params_temp[i]);
|
|
127
|
+
}
|
|
128
|
+
}
|
|
129
|
+
for (i = 0; i < count_cations - 1; i++)
|
|
130
|
+
{
|
|
131
|
+
for (j = i + 1; j < count_cations; j++)
|
|
132
|
+
{
|
|
133
|
+
snprintf(line, max_line, "%s %s 1", spec[i]->name, spec[j]->name);
|
|
134
|
+
pzp_ptr = pitz_param_read(line, 2);
|
|
135
|
+
pzp_ptr->type = TYPE_ETHETA;
|
|
136
|
+
size_t count_pitz_param = pitz_params.size();
|
|
137
|
+
pitz_params.resize(count_pitz_param + 1);
|
|
138
|
+
pitz_params[count_pitz_param] = pzp_ptr;
|
|
139
|
+
}
|
|
140
|
+
}
|
|
141
|
+
for (i = 2 * (int)s.size(); i < 2 * (int)s.size() + count_anions - 1; i++)
|
|
142
|
+
{
|
|
143
|
+
for (j = i + 1; j < 2 * (int)s.size() + count_anions; j++)
|
|
144
|
+
{
|
|
145
|
+
snprintf(line, max_line, "%s %s 1", spec[i]->name, spec[j]->name);
|
|
146
|
+
pzp_ptr = pitz_param_read(line, 2);
|
|
147
|
+
pzp_ptr->type = TYPE_ETHETA;
|
|
148
|
+
size_t count_pitz_param = pitz_params.size();
|
|
149
|
+
pitz_params.resize(count_pitz_param + 1);
|
|
150
|
+
pitz_params[count_pitz_param] = pzp_ptr;
|
|
151
|
+
}
|
|
152
|
+
}
|
|
153
|
+
/*
|
|
154
|
+
* put species numbers in pitz_params
|
|
155
|
+
*/
|
|
156
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
157
|
+
{
|
|
158
|
+
for (j = 0; j < 3; j++)
|
|
159
|
+
{
|
|
160
|
+
if (pitz_params[i]->species[j] == NULL)
|
|
161
|
+
continue;
|
|
162
|
+
pitz_params[i]->ispec[j] = ISPEC(pitz_params[i]->species[j]);
|
|
163
|
+
if ((j < 2 && pitz_params[i]->ispec[j] == -1) ||
|
|
164
|
+
(j == 2 && (pitz_params[i]->type == TYPE_PSI || pitz_params[i]->type == TYPE_ZETA)
|
|
165
|
+
&& pitz_params[i]->ispec[j] == -1))
|
|
166
|
+
{
|
|
167
|
+
input_error++;
|
|
168
|
+
error_string = sformatf(
|
|
169
|
+
"Species for Pitzer parameter not defined in SOLUTION_SPECIES, %s",
|
|
170
|
+
pitz_params[i]->species[j]);
|
|
171
|
+
error_msg(error_string, CONTINUE);
|
|
172
|
+
return (ERROR);
|
|
173
|
+
}
|
|
174
|
+
}
|
|
175
|
+
}
|
|
176
|
+
/*
|
|
177
|
+
* MacInnes data
|
|
178
|
+
*/
|
|
179
|
+
string1 = string_hsave("K+");
|
|
180
|
+
string2 = string_hsave("Cl-");
|
|
181
|
+
IC = ISPEC(string2);
|
|
182
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
183
|
+
{
|
|
184
|
+
if ((pitz_params[i]->species[0] == string1 &&
|
|
185
|
+
pitz_params[i]->species[1] == string2) ||
|
|
186
|
+
(pitz_params[i]->species[0] == string2 &&
|
|
187
|
+
pitz_params[i]->species[1] == string1) )
|
|
188
|
+
{
|
|
189
|
+
switch (pitz_params[i]->type)
|
|
190
|
+
{
|
|
191
|
+
case TYPE_B0:
|
|
192
|
+
mcb0 = pitz_params[i];
|
|
193
|
+
break;
|
|
194
|
+
case TYPE_B1:
|
|
195
|
+
mcb1 = pitz_params[i];
|
|
196
|
+
break;
|
|
197
|
+
case TYPE_C0:
|
|
198
|
+
mcc0 = pitz_params[i];
|
|
199
|
+
break;
|
|
200
|
+
case TYPE_B2:
|
|
201
|
+
case TYPE_THETA:
|
|
202
|
+
case TYPE_LAMBDA:
|
|
203
|
+
case TYPE_ZETA:
|
|
204
|
+
case TYPE_PSI:
|
|
205
|
+
case TYPE_ETHETA:
|
|
206
|
+
case TYPE_ALPHAS:
|
|
207
|
+
case TYPE_MU:
|
|
208
|
+
case TYPE_ETA:
|
|
209
|
+
case TYPE_Other:
|
|
210
|
+
default:
|
|
211
|
+
break;
|
|
212
|
+
}
|
|
213
|
+
}
|
|
214
|
+
}
|
|
215
|
+
if (mcb0 == NULL && mcb1 == NULL && mcc0 == NULL && ICON == TRUE)
|
|
216
|
+
{
|
|
217
|
+
error_string = sformatf(
|
|
218
|
+
"No KCl interaction parameters, turning off MacInnes scaling.");
|
|
219
|
+
warning_msg(error_string);
|
|
220
|
+
ICON = FALSE;
|
|
221
|
+
}
|
|
222
|
+
/*
|
|
223
|
+
* Set alpha values
|
|
224
|
+
*/
|
|
225
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
226
|
+
{
|
|
227
|
+
z0 = fabs(spec[pitz_params[i]->ispec[0]]->z);
|
|
228
|
+
z1 = fabs(spec[pitz_params[i]->ispec[1]]->z);
|
|
229
|
+
if (equal(z0, 1.0, 1e-8) || equal(z1, 1.0, 1e-8))
|
|
230
|
+
{
|
|
231
|
+
order = 1;
|
|
232
|
+
}
|
|
233
|
+
else if (equal(z0, 2.0, 1e-8) && equal(z1, 2.0, 1e-8))
|
|
234
|
+
{
|
|
235
|
+
order = 2;
|
|
236
|
+
}
|
|
237
|
+
else
|
|
238
|
+
{
|
|
239
|
+
order = 3;
|
|
240
|
+
}
|
|
241
|
+
if (pitz_params[i]->type == TYPE_B1)
|
|
242
|
+
{
|
|
243
|
+
switch (order)
|
|
244
|
+
{
|
|
245
|
+
case 1:
|
|
246
|
+
case 3:
|
|
247
|
+
pitz_params[i]->alpha = 2.0;
|
|
248
|
+
break;
|
|
249
|
+
case 2:
|
|
250
|
+
pitz_params[i]->alpha = 1.4;
|
|
251
|
+
break;
|
|
252
|
+
}
|
|
253
|
+
}
|
|
254
|
+
else if (pitz_params[i]->type == TYPE_B2)
|
|
255
|
+
{
|
|
256
|
+
switch (order)
|
|
257
|
+
{
|
|
258
|
+
case 1:
|
|
259
|
+
pitz_params[i]->alpha = 12.0;
|
|
260
|
+
break;
|
|
261
|
+
case 2:
|
|
262
|
+
pitz_params[i]->alpha = 12.0;
|
|
263
|
+
break;
|
|
264
|
+
case 3:
|
|
265
|
+
pitz_params[i]->alpha = 50.0;
|
|
266
|
+
break;
|
|
267
|
+
}
|
|
268
|
+
}
|
|
269
|
+
}
|
|
270
|
+
/*
|
|
271
|
+
* Add specific alphas
|
|
272
|
+
*/
|
|
273
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
274
|
+
{
|
|
275
|
+
if (pitz_params[i]->type == TYPE_ALPHAS)
|
|
276
|
+
{
|
|
277
|
+
for (j = 0; j < (int)pitz_params.size(); j++)
|
|
278
|
+
{
|
|
279
|
+
if (pitz_params[j]->type != TYPE_B1)
|
|
280
|
+
continue;
|
|
281
|
+
if (pitz_params[i]->ispec[0] != pitz_params[j]->ispec[0])
|
|
282
|
+
continue;
|
|
283
|
+
if (pitz_params[i]->ispec[1] != pitz_params[j]->ispec[1])
|
|
284
|
+
continue;
|
|
285
|
+
pitz_params[j]->alpha = pitz_params[i]->a[0];
|
|
286
|
+
break;
|
|
287
|
+
}
|
|
288
|
+
for (j = 0; j < (int)pitz_params.size(); j++)
|
|
289
|
+
{
|
|
290
|
+
if (pitz_params[j]->type != TYPE_B2)
|
|
291
|
+
continue;
|
|
292
|
+
if (pitz_params[i]->ispec[0] != pitz_params[j]->ispec[0])
|
|
293
|
+
continue;
|
|
294
|
+
if (pitz_params[i]->ispec[1] != pitz_params[j]->ispec[1])
|
|
295
|
+
continue;
|
|
296
|
+
pitz_params[j]->alpha = pitz_params[i]->a[1];
|
|
297
|
+
break;
|
|
298
|
+
}
|
|
299
|
+
}
|
|
300
|
+
}
|
|
301
|
+
|
|
302
|
+
/*
|
|
303
|
+
* Add thetas pointer to etheta pitzer parameters
|
|
304
|
+
*/
|
|
305
|
+
|
|
306
|
+
for (i = 0; i < (int)theta_params.size(); i++)
|
|
307
|
+
{
|
|
308
|
+
delete theta_params[i];
|
|
309
|
+
}
|
|
310
|
+
theta_params.clear();
|
|
311
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
312
|
+
{
|
|
313
|
+
if (pitz_params[i]->type == TYPE_ETHETA)
|
|
314
|
+
{
|
|
315
|
+
z0 = spec[pitz_params[i]->ispec[0]]->z;
|
|
316
|
+
z1 = spec[pitz_params[i]->ispec[1]]->z;
|
|
317
|
+
theta_param_ptr = theta_param_search(z0, z1);
|
|
318
|
+
if (theta_param_ptr == NULL)
|
|
319
|
+
{
|
|
320
|
+
size_t count_theta_param = theta_params.size();
|
|
321
|
+
theta_params.resize(count_theta_param + 1);
|
|
322
|
+
theta_params[count_theta_param] = new class theta_param;
|
|
323
|
+
theta_params[count_theta_param]->zj = z0;
|
|
324
|
+
theta_params[count_theta_param]->zk = z1;
|
|
325
|
+
theta_param_ptr = theta_params[count_theta_param];
|
|
326
|
+
}
|
|
327
|
+
pitz_params[i]->thetas = theta_param_ptr;
|
|
328
|
+
}
|
|
329
|
+
}
|
|
330
|
+
/*
|
|
331
|
+
* Tidy TYPE_MU
|
|
332
|
+
*/
|
|
333
|
+
|
|
334
|
+
/* Coef for Osmotic coefficient for TYPE_MU */
|
|
335
|
+
|
|
336
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
337
|
+
{
|
|
338
|
+
if (pitz_params[i]->type == TYPE_MU)
|
|
339
|
+
{
|
|
340
|
+
i0 = pitz_params[i]->ispec[0];
|
|
341
|
+
i1 = pitz_params[i]->ispec[1];
|
|
342
|
+
i2 = pitz_params[i]->ispec[2];
|
|
343
|
+
//count_pos = count_neg = count_neut = 0;
|
|
344
|
+
count_neut = 0;
|
|
345
|
+
for (j = 0; j <= 2; j++)
|
|
346
|
+
{
|
|
347
|
+
if (spec[pitz_params[i]->ispec[j]]->z > 0)
|
|
348
|
+
{
|
|
349
|
+
//count_pos++;
|
|
350
|
+
}
|
|
351
|
+
if (spec[pitz_params[i]->ispec[j]]->z == 0)
|
|
352
|
+
{
|
|
353
|
+
count_neut++;
|
|
354
|
+
}
|
|
355
|
+
if (spec[pitz_params[i]->ispec[j]]->z < 0)
|
|
356
|
+
{
|
|
357
|
+
//count_neg++;
|
|
358
|
+
}
|
|
359
|
+
}
|
|
360
|
+
/* All neutral */
|
|
361
|
+
if (count_neut == 3)
|
|
362
|
+
{
|
|
363
|
+
if (i0 == i1 && i1 == i2)
|
|
364
|
+
{
|
|
365
|
+
/* type n, n, n */
|
|
366
|
+
pitz_params[i]->os_coef = 1;
|
|
367
|
+
continue;
|
|
368
|
+
}
|
|
369
|
+
else if (i0 == i1 || i1 == i2 || i0 == i2)
|
|
370
|
+
{
|
|
371
|
+
/* type n, n, n' */
|
|
372
|
+
pitz_params[i]->os_coef = 3;
|
|
373
|
+
continue;
|
|
374
|
+
}
|
|
375
|
+
else
|
|
376
|
+
{
|
|
377
|
+
/* type n, n', n'' */
|
|
378
|
+
pitz_params[i]->os_coef = 6;
|
|
379
|
+
continue;
|
|
380
|
+
}
|
|
381
|
+
}
|
|
382
|
+
/* Two neutral, one anion or cation */
|
|
383
|
+
if (i0 == i1 || i1 == i2 || i0 == i2)
|
|
384
|
+
{
|
|
385
|
+
/* type n, n, a|c */
|
|
386
|
+
pitz_params[i]->os_coef = 3;
|
|
387
|
+
continue;
|
|
388
|
+
}
|
|
389
|
+
else
|
|
390
|
+
{
|
|
391
|
+
/* type n, n', a|c */
|
|
392
|
+
pitz_params[i]->os_coef = 6;
|
|
393
|
+
continue;
|
|
394
|
+
}
|
|
395
|
+
}
|
|
396
|
+
}
|
|
397
|
+
|
|
398
|
+
/* Coef for gammas for TYPE_MU */
|
|
399
|
+
|
|
400
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
401
|
+
{
|
|
402
|
+
if (pitz_params[i]->type == TYPE_MU)
|
|
403
|
+
{
|
|
404
|
+
for (j = 0; j <= 2; j++)
|
|
405
|
+
{
|
|
406
|
+
count[j] = 0;
|
|
407
|
+
for (jj = 0; jj <= 2; jj++)
|
|
408
|
+
{
|
|
409
|
+
if (pitz_params[i]->ispec[j] == pitz_params[i]->ispec[jj])
|
|
410
|
+
{
|
|
411
|
+
count[j]++;
|
|
412
|
+
}
|
|
413
|
+
}
|
|
414
|
+
}
|
|
415
|
+
for (j = 0; j <= 2; j++)
|
|
416
|
+
{
|
|
417
|
+
/* cation or anion */
|
|
418
|
+
if (spec[pitz_params[i]->ispec[j]]->z < 0
|
|
419
|
+
|| spec[pitz_params[i]->ispec[j]]->z > 0)
|
|
420
|
+
{
|
|
421
|
+
if (count[0] > 1 || count[1] > 1)
|
|
422
|
+
{
|
|
423
|
+
pitz_params[i]->ln_coef[j] = 3;
|
|
424
|
+
}
|
|
425
|
+
else
|
|
426
|
+
{
|
|
427
|
+
pitz_params[i]->ln_coef[j] = 6;
|
|
428
|
+
}
|
|
429
|
+
continue;
|
|
430
|
+
}
|
|
431
|
+
/* Neutral */
|
|
432
|
+
if (count[j] == 3)
|
|
433
|
+
{
|
|
434
|
+
pitz_params[i]->ln_coef[j] = 1;
|
|
435
|
+
}
|
|
436
|
+
else if (count[j] == 2)
|
|
437
|
+
{
|
|
438
|
+
pitz_params[i]->ln_coef[j] = 3;
|
|
439
|
+
}
|
|
440
|
+
else if (count[j] == 1)
|
|
441
|
+
{
|
|
442
|
+
if (count[0] > 1 || count[1] > 1)
|
|
443
|
+
{
|
|
444
|
+
pitz_params[i]->ln_coef[j] = 3;
|
|
445
|
+
}
|
|
446
|
+
else
|
|
447
|
+
{
|
|
448
|
+
pitz_params[i]->ln_coef[j] = 6;
|
|
449
|
+
}
|
|
450
|
+
}
|
|
451
|
+
}
|
|
452
|
+
}
|
|
453
|
+
}
|
|
454
|
+
/* Debug TYPE_MU coefficients */
|
|
455
|
+
/*
|
|
456
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
457
|
+
{
|
|
458
|
+
if (pitz_params[i]->type == TYPE_MU)
|
|
459
|
+
{
|
|
460
|
+
fprintf(stderr, "%s\t%s\t%s\n", pitz_params[i]->species[0], pitz_params[i]->species[1], pitz_params[i]->species[2]);
|
|
461
|
+
fprintf(stderr, "%f\t%f\t%f\n", pitz_params[i]->ln_coef[0], pitz_params[i]->ln_coef[1], pitz_params[i]->ln_coef[2]);
|
|
462
|
+
fprintf(stderr, "%f\n\n", pitz_params[i]->os_coef);
|
|
463
|
+
}
|
|
464
|
+
}
|
|
465
|
+
*/
|
|
466
|
+
/*
|
|
467
|
+
* Tidy TYPE_LAMBDA
|
|
468
|
+
*/
|
|
469
|
+
|
|
470
|
+
/* Coef for Osmotic coefficient for TYPE_LAMBDA */
|
|
471
|
+
|
|
472
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
473
|
+
{
|
|
474
|
+
if (pitz_params[i]->type == TYPE_LAMBDA)
|
|
475
|
+
{
|
|
476
|
+
i0 = pitz_params[i]->ispec[0];
|
|
477
|
+
i1 = pitz_params[i]->ispec[1];
|
|
478
|
+
/* All neutral */
|
|
479
|
+
if (i0 == i1)
|
|
480
|
+
{
|
|
481
|
+
/* type n, n */
|
|
482
|
+
pitz_params[i]->os_coef = 0.5;
|
|
483
|
+
pitz_params[i]->ln_coef[0] = 1;
|
|
484
|
+
pitz_params[i]->ln_coef[1] = 1;
|
|
485
|
+
}
|
|
486
|
+
else
|
|
487
|
+
{
|
|
488
|
+
/* type nn', na, nc */
|
|
489
|
+
pitz_params[i]->os_coef = 1;
|
|
490
|
+
pitz_params[i]->ln_coef[0] = 2;
|
|
491
|
+
pitz_params[i]->ln_coef[1] = 2;
|
|
492
|
+
}
|
|
493
|
+
}
|
|
494
|
+
}
|
|
495
|
+
/* Debug TYPE_LAMBDA coefficients */
|
|
496
|
+
/*
|
|
497
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
498
|
+
{
|
|
499
|
+
if (pitz_params[i]->type == TYPE_LAMBDA)
|
|
500
|
+
{
|
|
501
|
+
fprintf(stderr, "%s\t%s\n", pitz_params[i]->species[0], pitz_params[i]->species[1]);
|
|
502
|
+
fprintf(stderr, "%f\t%f\n", pitz_params[i]->ln_coef[0], pitz_params[i]->ln_coef[1]);
|
|
503
|
+
fprintf(stderr, "%f\n\n", pitz_params[i]->os_coef);
|
|
504
|
+
}
|
|
505
|
+
}
|
|
506
|
+
*/
|
|
507
|
+
/* remake map */
|
|
508
|
+
{
|
|
509
|
+
pitz_param_map.clear();
|
|
510
|
+
for (int j = 0; j < (int)pitz_params.size(); j++)
|
|
511
|
+
{
|
|
512
|
+
std::set< std::string > header;
|
|
513
|
+
for (int i = 0; i < 3; i++)
|
|
514
|
+
{
|
|
515
|
+
if (pitz_params[j]->species[i] != NULL) header.insert(pitz_params[j]->species[i]);
|
|
516
|
+
}
|
|
517
|
+
std::ostringstream key_str;
|
|
518
|
+
key_str << pitz_params[j]->type << " ";
|
|
519
|
+
std::set< std::string >::iterator it = header.begin();
|
|
520
|
+
for(; it != header.end(); ++it)
|
|
521
|
+
{
|
|
522
|
+
key_str << *it << " ";
|
|
523
|
+
}
|
|
524
|
+
std::string key = key_str.str().c_str();
|
|
525
|
+
pitz_param_map[key] = j;
|
|
526
|
+
}
|
|
527
|
+
assert ((int) pitz_param_map.size() == (int)pitz_params.size());
|
|
528
|
+
}
|
|
529
|
+
return OK;
|
|
530
|
+
}
|
|
531
|
+
|
|
532
|
+
/* ---------------------------------------------------------------------- */
|
|
533
|
+
int Phreeqc::
|
|
534
|
+
ISPEC(const char *name)
|
|
535
|
+
/* ---------------------------------------------------------------------- */
|
|
536
|
+
/*
|
|
537
|
+
* Find species number in spec for character string species name
|
|
538
|
+
*/
|
|
539
|
+
{
|
|
540
|
+
int i;
|
|
541
|
+
for (i = 0; i < 3 * (int)s.size(); i++)
|
|
542
|
+
{
|
|
543
|
+
if (spec[i] == NULL)
|
|
544
|
+
continue;
|
|
545
|
+
if (name == spec[i]->name)
|
|
546
|
+
{
|
|
547
|
+
return (i);
|
|
548
|
+
}
|
|
549
|
+
}
|
|
550
|
+
return (-1);
|
|
551
|
+
}
|
|
552
|
+
|
|
553
|
+
/* ---------------------------------------------------------------------- */
|
|
554
|
+
int Phreeqc::
|
|
555
|
+
read_pitzer(void)
|
|
556
|
+
/* ---------------------------------------------------------------------- */
|
|
557
|
+
{
|
|
558
|
+
/*
|
|
559
|
+
* Reads advection information
|
|
560
|
+
*
|
|
561
|
+
* Arguments:
|
|
562
|
+
* none
|
|
563
|
+
*
|
|
564
|
+
* Returns:
|
|
565
|
+
* KEYWORD if keyword encountered, input_error may be incremented if
|
|
566
|
+
* a keyword is encountered in an unexpected position
|
|
567
|
+
* EOF if eof encountered while reading mass balance concentrations
|
|
568
|
+
* ERROR if error occurred reading data
|
|
569
|
+
*
|
|
570
|
+
*/
|
|
571
|
+
/*
|
|
572
|
+
* Read advection parameters:
|
|
573
|
+
* number of cells;
|
|
574
|
+
* number of shifts;
|
|
575
|
+
*/
|
|
576
|
+
int n;
|
|
577
|
+
class pitz_param *pzp_ptr;
|
|
578
|
+
pitz_param_type pzp_type;
|
|
579
|
+
|
|
580
|
+
int return_value, opt, opt_save;
|
|
581
|
+
const char* next_char;
|
|
582
|
+
const char *opt_list[] = {
|
|
583
|
+
"b0", /* 0 */
|
|
584
|
+
"b1", /* 1 */
|
|
585
|
+
"b2", /* 2 */
|
|
586
|
+
"c0", /* 3 */
|
|
587
|
+
"theta", /* 4 */
|
|
588
|
+
"lamda", /* 5 */
|
|
589
|
+
"zeta", /* 6 */
|
|
590
|
+
"psi", /* 7 */
|
|
591
|
+
"macinnes", /* 8 */
|
|
592
|
+
"macinnis", /* 9 */
|
|
593
|
+
"mac", /* 10 */
|
|
594
|
+
"redox", /* 11 */
|
|
595
|
+
"pe", /* 12 */
|
|
596
|
+
"alphas", /* 13 */
|
|
597
|
+
"mu", /* 14 */
|
|
598
|
+
"eta", /* 15 */
|
|
599
|
+
"etheta", /* 16 */
|
|
600
|
+
"use_etheta", /* 17 */
|
|
601
|
+
"lambda", /* 18 */
|
|
602
|
+
"aphi" /* 19 */
|
|
603
|
+
};
|
|
604
|
+
int count_opt_list = 20;
|
|
605
|
+
/*
|
|
606
|
+
* Read lines
|
|
607
|
+
*/
|
|
608
|
+
opt_save = OPTION_ERROR;
|
|
609
|
+
return_value = UNKNOWN;
|
|
610
|
+
n = -1;
|
|
611
|
+
pzp_type = TYPE_Other;
|
|
612
|
+
for (;;)
|
|
613
|
+
{
|
|
614
|
+
opt = get_option(opt_list, count_opt_list, &next_char);
|
|
615
|
+
if (opt == OPTION_DEFAULT)
|
|
616
|
+
{
|
|
617
|
+
opt = opt_save;
|
|
618
|
+
}
|
|
619
|
+
switch (opt)
|
|
620
|
+
{
|
|
621
|
+
case OPTION_EOF: /* end of file */
|
|
622
|
+
return_value = EOF;
|
|
623
|
+
break;
|
|
624
|
+
case OPTION_KEYWORD: /* keyword */
|
|
625
|
+
return_value = KEYWORD;
|
|
626
|
+
break;
|
|
627
|
+
case OPTION_DEFAULT:
|
|
628
|
+
pzp_ptr = pitz_param_read(line, n);
|
|
629
|
+
if (pzp_ptr != NULL)
|
|
630
|
+
{
|
|
631
|
+
pzp_ptr->type = pzp_type;
|
|
632
|
+
if (pzp_type == TYPE_APHI)
|
|
633
|
+
{
|
|
634
|
+
delete aphi;
|
|
635
|
+
aphi = pzp_ptr;
|
|
636
|
+
}
|
|
637
|
+
else
|
|
638
|
+
{
|
|
639
|
+
pitz_param_store(pzp_ptr);
|
|
640
|
+
}
|
|
641
|
+
}
|
|
642
|
+
break;
|
|
643
|
+
case OPTION_ERROR:
|
|
644
|
+
input_error++;
|
|
645
|
+
error_msg("Unknown input in PITZER keyword.", CONTINUE);
|
|
646
|
+
error_msg(line_save, CONTINUE);
|
|
647
|
+
break;
|
|
648
|
+
case 0: /* b0 */
|
|
649
|
+
pzp_type = TYPE_B0;
|
|
650
|
+
n = 2;
|
|
651
|
+
opt_save = OPTION_DEFAULT;
|
|
652
|
+
break;
|
|
653
|
+
case 1: /* b1 */
|
|
654
|
+
pzp_type = TYPE_B1;
|
|
655
|
+
n = 2;
|
|
656
|
+
opt_save = OPTION_DEFAULT;
|
|
657
|
+
break;
|
|
658
|
+
case 2: /* b2 */
|
|
659
|
+
pzp_type = TYPE_B2;
|
|
660
|
+
n = 2;
|
|
661
|
+
opt_save = OPTION_DEFAULT;
|
|
662
|
+
break;
|
|
663
|
+
case 3: /* c0 */
|
|
664
|
+
pzp_type = TYPE_C0;
|
|
665
|
+
n = 2;
|
|
666
|
+
opt_save = OPTION_DEFAULT;
|
|
667
|
+
break;
|
|
668
|
+
case 4: /* theta */
|
|
669
|
+
pzp_type = TYPE_THETA;
|
|
670
|
+
n = 2;
|
|
671
|
+
opt_save = OPTION_DEFAULT;
|
|
672
|
+
break;
|
|
673
|
+
case 5: /* lamda */
|
|
674
|
+
case 18: /* lambda */
|
|
675
|
+
pzp_type = TYPE_LAMBDA;
|
|
676
|
+
n = 2;
|
|
677
|
+
opt_save = OPTION_DEFAULT;
|
|
678
|
+
break;
|
|
679
|
+
case 6: /* zeta */
|
|
680
|
+
pzp_type = TYPE_ZETA;
|
|
681
|
+
n = 3;
|
|
682
|
+
opt_save = OPTION_DEFAULT;
|
|
683
|
+
break;
|
|
684
|
+
case 7: /* psi */
|
|
685
|
+
pzp_type = TYPE_PSI;
|
|
686
|
+
n = 3;
|
|
687
|
+
opt_save = OPTION_DEFAULT;
|
|
688
|
+
break;
|
|
689
|
+
case 13: /* alphas */
|
|
690
|
+
pzp_type = TYPE_ALPHAS;
|
|
691
|
+
n = 2;
|
|
692
|
+
opt_save = OPTION_DEFAULT;
|
|
693
|
+
break;
|
|
694
|
+
case 8: /* macinnes */
|
|
695
|
+
case 9: /* macinnis */
|
|
696
|
+
case 10: /* mac */
|
|
697
|
+
opt_save = OPTION_ERROR;
|
|
698
|
+
ICON = get_true_false(next_char, TRUE);
|
|
699
|
+
break;
|
|
700
|
+
case 11: /* redox */
|
|
701
|
+
case 12: /* pe */
|
|
702
|
+
opt_save = OPTION_ERROR;
|
|
703
|
+
pitzer_pe = get_true_false(next_char, TRUE);
|
|
704
|
+
break;
|
|
705
|
+
case 14: /* mu */
|
|
706
|
+
pzp_type = TYPE_MU;
|
|
707
|
+
n = 3;
|
|
708
|
+
opt_save = OPTION_DEFAULT;
|
|
709
|
+
break;
|
|
710
|
+
case 15: /* eta */
|
|
711
|
+
pzp_type = TYPE_ETA;
|
|
712
|
+
n = 3;
|
|
713
|
+
opt_save = OPTION_DEFAULT;
|
|
714
|
+
break;
|
|
715
|
+
case 16: /* etheta */
|
|
716
|
+
case 17: /* use_etheta */
|
|
717
|
+
opt_save = OPTION_ERROR;
|
|
718
|
+
use_etheta = get_true_false(next_char, TRUE);
|
|
719
|
+
break;
|
|
720
|
+
case 19: /* aphi */
|
|
721
|
+
pzp_type = TYPE_APHI;
|
|
722
|
+
n = 0;
|
|
723
|
+
opt_save = OPTION_DEFAULT;
|
|
724
|
+
break;
|
|
725
|
+
}
|
|
726
|
+
if (return_value == EOF || return_value == KEYWORD)
|
|
727
|
+
break;
|
|
728
|
+
}
|
|
729
|
+
pitzer_model = TRUE;
|
|
730
|
+
return (return_value);
|
|
731
|
+
}
|
|
732
|
+
|
|
733
|
+
/* ---------------------------------------------------------------------- */
|
|
734
|
+
int Phreeqc::
|
|
735
|
+
PTEMP(LDBLE TK)
|
|
736
|
+
/* ---------------------------------------------------------------------- */
|
|
737
|
+
{
|
|
738
|
+
/*
|
|
739
|
+
C
|
|
740
|
+
C SUBROUTINE TO CALCULATE TEMPERATURE DEPENDENCE OF PITZER PARAMETER
|
|
741
|
+
C
|
|
742
|
+
*/
|
|
743
|
+
LDBLE TR = 298.15;
|
|
744
|
+
|
|
745
|
+
if (fabs(TK - OTEMP) < 0.001 && fabs(patm_x - OPRESS) < 0.1)
|
|
746
|
+
return OK;
|
|
747
|
+
DW0 = rho_0 = calc_rho_0(TK - 273.15, patm_x);
|
|
748
|
+
VP = patm_x;
|
|
749
|
+
#if !defined(PITZER_LISTS)
|
|
750
|
+
int i;
|
|
751
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
752
|
+
{
|
|
753
|
+
calc_pitz_param(pitz_params[i], TK, TR);
|
|
754
|
+
}
|
|
755
|
+
#else
|
|
756
|
+
for (size_t j = 0; j < param_list.size(); j++)
|
|
757
|
+
{
|
|
758
|
+
int i = param_list[j];
|
|
759
|
+
calc_pitz_param(pitz_params[i], TK, TR);
|
|
760
|
+
}
|
|
761
|
+
if (aphi)
|
|
762
|
+
{
|
|
763
|
+
calc_pitz_param(aphi, TK, TR);
|
|
764
|
+
}
|
|
765
|
+
if (mcb0)
|
|
766
|
+
{
|
|
767
|
+
calc_pitz_param(mcb0, TK, TR);
|
|
768
|
+
}
|
|
769
|
+
if (mcb1)
|
|
770
|
+
{
|
|
771
|
+
calc_pitz_param(mcb1, TK, TR);
|
|
772
|
+
}
|
|
773
|
+
if (mcc0)
|
|
774
|
+
{
|
|
775
|
+
calc_pitz_param(mcc0, TK, TR);
|
|
776
|
+
}
|
|
777
|
+
#endif
|
|
778
|
+
calc_dielectrics(TK - 273.15, patm_x);
|
|
779
|
+
OTEMP = TK;
|
|
780
|
+
OPRESS = patm_x;
|
|
781
|
+
return OK;
|
|
782
|
+
}
|
|
783
|
+
|
|
784
|
+
/* ---------------------------------------------------------------------- */
|
|
785
|
+
int Phreeqc::
|
|
786
|
+
calc_pitz_param(class pitz_param *pz_ptr, LDBLE TK, LDBLE TR)
|
|
787
|
+
/* ---------------------------------------------------------------------- */
|
|
788
|
+
{
|
|
789
|
+
LDBLE param;
|
|
790
|
+
/*
|
|
791
|
+
*/
|
|
792
|
+
if (fabs(TK - TR) < 0.001)
|
|
793
|
+
{
|
|
794
|
+
param = pz_ptr->a[0];
|
|
795
|
+
}
|
|
796
|
+
else
|
|
797
|
+
{
|
|
798
|
+
param = (pz_ptr->a[0] +
|
|
799
|
+
pz_ptr->a[1] * (1.e0 / TK - 1.e0 / TR) +
|
|
800
|
+
pz_ptr->a[2] * log(TK / TR) +
|
|
801
|
+
pz_ptr->a[3] * (TK - TR) +
|
|
802
|
+
pz_ptr->a[4] * (TK * TK - TR * TR)) +
|
|
803
|
+
pz_ptr->a[5] * (1.e0 / (TK * TK) - 1.e0 / (TR * TR));
|
|
804
|
+
}
|
|
805
|
+
pz_ptr->p = param;
|
|
806
|
+
switch (pz_ptr->type)
|
|
807
|
+
{
|
|
808
|
+
case TYPE_B0:
|
|
809
|
+
pz_ptr->U.b0 = param;
|
|
810
|
+
break;
|
|
811
|
+
case TYPE_B1:
|
|
812
|
+
pz_ptr->U.b1 = param;
|
|
813
|
+
break;
|
|
814
|
+
case TYPE_B2:
|
|
815
|
+
pz_ptr->U.b2 = param;
|
|
816
|
+
break;
|
|
817
|
+
case TYPE_C0:
|
|
818
|
+
pz_ptr->U.c0 = param;
|
|
819
|
+
break;
|
|
820
|
+
case TYPE_THETA:
|
|
821
|
+
pz_ptr->U.theta = param;
|
|
822
|
+
break;
|
|
823
|
+
case TYPE_LAMBDA:
|
|
824
|
+
pz_ptr->U.lambda = param;
|
|
825
|
+
break;
|
|
826
|
+
case TYPE_ZETA:
|
|
827
|
+
pz_ptr->U.zeta = param;
|
|
828
|
+
break;
|
|
829
|
+
case TYPE_ETHETA:
|
|
830
|
+
break;
|
|
831
|
+
case TYPE_PSI:
|
|
832
|
+
pz_ptr->U.psi = param;
|
|
833
|
+
break;
|
|
834
|
+
case TYPE_ALPHAS:
|
|
835
|
+
break;
|
|
836
|
+
case TYPE_MU:
|
|
837
|
+
pz_ptr->U.mu = param;
|
|
838
|
+
break;
|
|
839
|
+
case TYPE_ETA:
|
|
840
|
+
pz_ptr->U.eta = param;
|
|
841
|
+
break;
|
|
842
|
+
case TYPE_APHI:
|
|
843
|
+
pz_ptr->U.aphi = param;
|
|
844
|
+
break;
|
|
845
|
+
case TYPE_Other:
|
|
846
|
+
default:
|
|
847
|
+
error_msg("Should not be TYPE_Other in function calc_pitz_param",
|
|
848
|
+
STOP);
|
|
849
|
+
break;
|
|
850
|
+
}
|
|
851
|
+
return OK;
|
|
852
|
+
}
|
|
853
|
+
#if !defined(PITZER_LISTS)
|
|
854
|
+
/* ---------------------------------------------------------------------- */
|
|
855
|
+
int Phreeqc::
|
|
856
|
+
pitzer(void)
|
|
857
|
+
/* ---------------------------------------------------------------------- */
|
|
858
|
+
{
|
|
859
|
+
int i, i0, i1, i2;
|
|
860
|
+
LDBLE param, l_alpha, z0, z1;
|
|
861
|
+
LDBLE etheta, ethetap;
|
|
862
|
+
/*
|
|
863
|
+
LDBLE CONV, XI, XX, OSUM, BIGZ, DI, F, XXX, GAMCLM,
|
|
864
|
+
CSUM, PHIMAC, OSMOT, BMXP, ETHEAP, CMX, BMX, PHI,
|
|
865
|
+
BMXPHI, PHIPHI, AW, A, B;
|
|
866
|
+
*/
|
|
867
|
+
LDBLE CONV, XX, OSUM, BIGZ, DI, F, F1, F2, F_var, XXX, GAMCLM, CSUM, PHIMAC, OSMOT,
|
|
868
|
+
B, B1, B2;
|
|
869
|
+
LDBLE I, TK;
|
|
870
|
+
/*
|
|
871
|
+
C
|
|
872
|
+
C INITIALIZE
|
|
873
|
+
C
|
|
874
|
+
*/
|
|
875
|
+
CONV = 1.0 / LOG_10;
|
|
876
|
+
XX = 0.0;
|
|
877
|
+
OSUM = 0.0;
|
|
878
|
+
/*n
|
|
879
|
+
I = *I_X;
|
|
880
|
+
TK = *TK_X;
|
|
881
|
+
*/
|
|
882
|
+
I = mu_x;
|
|
883
|
+
TK = tk_x;
|
|
884
|
+
/* DH_AB(TK, &A, &B); */
|
|
885
|
+
/*
|
|
886
|
+
C
|
|
887
|
+
C TRANSFER DATA FROM TO M
|
|
888
|
+
C
|
|
889
|
+
*/
|
|
890
|
+
for (i = 0; i < 3 * (int)s.size(); i++)
|
|
891
|
+
{
|
|
892
|
+
IPRSNT[i] = FALSE;
|
|
893
|
+
M[i] = 0.0;
|
|
894
|
+
if (spec[i] != NULL && spec[i]->in == TRUE)
|
|
895
|
+
{
|
|
896
|
+
if (spec[i]->type == EX ||
|
|
897
|
+
spec[i]->type == SURF || spec[i]->type == SURF_PSI)
|
|
898
|
+
continue;
|
|
899
|
+
M[i] = under(spec[i]->lm);
|
|
900
|
+
if (M[i] > MIN_TOTAL)
|
|
901
|
+
IPRSNT[i] = TRUE;
|
|
902
|
+
}
|
|
903
|
+
}
|
|
904
|
+
if (ICON == TRUE)
|
|
905
|
+
{
|
|
906
|
+
IPRSNT[IC] = TRUE;
|
|
907
|
+
}
|
|
908
|
+
/*
|
|
909
|
+
ICON = 0;
|
|
910
|
+
M[1] = 1.40070736;
|
|
911
|
+
M[4] = 2.52131086E-05;
|
|
912
|
+
M[140] = 4.59985435E-09;
|
|
913
|
+
*/
|
|
914
|
+
|
|
915
|
+
/*
|
|
916
|
+
C
|
|
917
|
+
C COMPUTE PITZER COEFFICIENTS' TEMPERATURE DEPENDENCE
|
|
918
|
+
C
|
|
919
|
+
*/
|
|
920
|
+
PTEMP(TK);
|
|
921
|
+
for (i = 0; i < 2 * (int)s.size() + count_anions; i++)
|
|
922
|
+
{
|
|
923
|
+
LGAMMA[i] = 0.0;
|
|
924
|
+
if (IPRSNT[i] == TRUE)
|
|
925
|
+
{
|
|
926
|
+
XX = XX + M[i] * fabs(spec[i]->z);
|
|
927
|
+
OSUM = OSUM + M[i];
|
|
928
|
+
}
|
|
929
|
+
}
|
|
930
|
+
/*
|
|
931
|
+
C
|
|
932
|
+
C EQUATION (8)
|
|
933
|
+
C
|
|
934
|
+
*/
|
|
935
|
+
BIGZ = XX;
|
|
936
|
+
DI = sqrt(I);
|
|
937
|
+
/*
|
|
938
|
+
C
|
|
939
|
+
C CALCULATE F & GAMCLM
|
|
940
|
+
C
|
|
941
|
+
*/
|
|
942
|
+
B = 1.2;
|
|
943
|
+
F = F1 = F2 = -A0 * (DI / (1.0 + B * DI) + 2.0 * log(1.0 + B * DI) / B);
|
|
944
|
+
if (patm_x > 1.0)
|
|
945
|
+
{
|
|
946
|
+
LDBLE pap;
|
|
947
|
+
pap = (7e-5 + 1.93e-9 * pow(TK - 250.0, 2.0)) * patm_x;
|
|
948
|
+
B1 = B - (pap > 0.2 ? 0.2 : pap);
|
|
949
|
+
pap = (9.65e-10 * pow(TK - 263.0, 2.773)) * pow(patm_x, 0.623);
|
|
950
|
+
//pap = (-5.22e-4 + 7.19e-8 * pow(TK - 263.0, 2.0)) * pow(patm_x, 0.623);
|
|
951
|
+
B2 = B - (pap > 0.2 ? 0.2 : pap);
|
|
952
|
+
if (B1 != 0)
|
|
953
|
+
F1 = -A0 * (DI / (1.0 + B1 * DI) + 2.0 * log(1.0 + B1 * DI) / B1);
|
|
954
|
+
if (B2 != 0)
|
|
955
|
+
F2 = -A0 * (DI / (1.0 + B2 * DI) + 2.0 * log(1.0 + B2 * DI) / B2);
|
|
956
|
+
}
|
|
957
|
+
XXX = 2.0 * DI;
|
|
958
|
+
XXX =
|
|
959
|
+
(1.0 - (1.0 + XXX - XXX * XXX * 0.5) * exp(-XXX)) / (XXX * XXX);
|
|
960
|
+
/*GAMCLM=F+I*2.0e0*(BCX(1,IK,IC)+BCX(2,IK,IC)*XXX)+1.5e0*BCX(4,IK,IC)*I*I; */
|
|
961
|
+
/*GAMCLM=F+I*2.0e0*(mcb0->U.b0 + mcb1->U.b1*XXX) + 1.5e0*mcc0->U.c0*I*I; */
|
|
962
|
+
/*GAMCLM = F + I * 2.0e0 * (mcb0->p + mcb1->p * XXX) + 1.5e0 * mcc0->p * I * I; */
|
|
963
|
+
GAMCLM = F1;
|
|
964
|
+
if (mcb0 != NULL)
|
|
965
|
+
GAMCLM += I * 2.0 * mcb0->p;
|
|
966
|
+
if (mcb1 != NULL)
|
|
967
|
+
GAMCLM += I * 2.0 * mcb1->p * XXX;
|
|
968
|
+
if (mcc0 != NULL)
|
|
969
|
+
GAMCLM += 1.5 * mcc0->p * I * I;
|
|
970
|
+
CSUM = 0.0;
|
|
971
|
+
OSMOT = -(A0) * pow(I, (LDBLE) 1.5) / (1.0 + B * DI);
|
|
972
|
+
/*
|
|
973
|
+
* Calculate ethetas
|
|
974
|
+
*/
|
|
975
|
+
for (i = 0; i < (int)theta_params.size(); i++)
|
|
976
|
+
{
|
|
977
|
+
z0 = theta_params[i]->zj;
|
|
978
|
+
z1 = theta_params[i]->zk;
|
|
979
|
+
ETHETAS(z0, z1, I, ðeta, ðetap);
|
|
980
|
+
theta_params[i]->etheta = etheta;
|
|
981
|
+
theta_params[i]->ethetap = ethetap;
|
|
982
|
+
}
|
|
983
|
+
/*
|
|
984
|
+
* Sums for F, LGAMMA, and OSMOT
|
|
985
|
+
*/
|
|
986
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
987
|
+
{
|
|
988
|
+
i0 = pitz_params[i]->ispec[0];
|
|
989
|
+
i1 = pitz_params[i]->ispec[1];
|
|
990
|
+
if (IPRSNT[i0] == FALSE || IPRSNT[i1] == FALSE)
|
|
991
|
+
continue;
|
|
992
|
+
z0 = spec[i0]->z;
|
|
993
|
+
z1 = spec[i1]->z;
|
|
994
|
+
param = pitz_params[i]->p;
|
|
995
|
+
l_alpha = pitz_params[i]->alpha;
|
|
996
|
+
F_var = 0;
|
|
997
|
+
switch (pitz_params[i]->type)
|
|
998
|
+
{
|
|
999
|
+
case TYPE_B0:
|
|
1000
|
+
LGAMMA[i0] += M[i1] * 2.0 * param;
|
|
1001
|
+
LGAMMA[i1] += M[i0] * 2.0 * param;
|
|
1002
|
+
OSMOT += M[i0] * M[i1] * param;
|
|
1003
|
+
break;
|
|
1004
|
+
case TYPE_B1:
|
|
1005
|
+
if (param != 0.0)
|
|
1006
|
+
{
|
|
1007
|
+
F_var = M[i0] * M[i1] * param * GP(l_alpha * DI) / I;
|
|
1008
|
+
LGAMMA[i0] += M[i1] * 2.0 * param * G(l_alpha * DI);
|
|
1009
|
+
LGAMMA[i1] += M[i0] * 2.0 * param * G(l_alpha * DI);
|
|
1010
|
+
OSMOT += M[i0] * M[i1] * param * exp(-l_alpha * DI);
|
|
1011
|
+
}
|
|
1012
|
+
break;
|
|
1013
|
+
case TYPE_B2:
|
|
1014
|
+
if (param != 0.0)
|
|
1015
|
+
{
|
|
1016
|
+
F_var = M[i0] * M[i1] * param * GP(l_alpha * DI) / I;
|
|
1017
|
+
LGAMMA[i0] += M[i1] * 2.0 * param * G(l_alpha * DI);
|
|
1018
|
+
LGAMMA[i1] += M[i0] * 2.0 * param * G(l_alpha * DI);
|
|
1019
|
+
OSMOT += M[i0] * M[i1] * param * exp(-l_alpha * DI);
|
|
1020
|
+
}
|
|
1021
|
+
break;
|
|
1022
|
+
case TYPE_C0:
|
|
1023
|
+
CSUM +=
|
|
1024
|
+
M[i0] * M[i1] * pitz_params[i]->p / (2.0 *
|
|
1025
|
+
sqrt(fabs(z0 * z1)));
|
|
1026
|
+
LGAMMA[i0] += M[i1] * BIGZ * param / (2.0 * sqrt(fabs(z0 * z1)));
|
|
1027
|
+
LGAMMA[i1] += M[i0] * BIGZ * param / (2.0 * sqrt(fabs(z0 * z1)));
|
|
1028
|
+
OSMOT +=
|
|
1029
|
+
M[i0] * M[i1] * BIGZ * param / (2.0 * sqrt(fabs(z0 * z1)));
|
|
1030
|
+
break;
|
|
1031
|
+
case TYPE_THETA:
|
|
1032
|
+
LGAMMA[i0] += 2.0 * M[i1] * (param /*+ ETHETA(z0, z1, I) */ );
|
|
1033
|
+
LGAMMA[i1] += 2.0 * M[i0] * (param /*+ ETHETA(z0, z1, I) */ );
|
|
1034
|
+
OSMOT += M[i0] * M[i1] * param;
|
|
1035
|
+
break;
|
|
1036
|
+
case TYPE_ETHETA:
|
|
1037
|
+
/*
|
|
1038
|
+
ETHETAS(z0, z1, I, ðeta, ðetap);
|
|
1039
|
+
*/
|
|
1040
|
+
if (use_etheta == TRUE)
|
|
1041
|
+
{
|
|
1042
|
+
etheta = pitz_params[i]->thetas->etheta;
|
|
1043
|
+
ethetap = pitz_params[i]->thetas->ethetap;
|
|
1044
|
+
F_var = M[i0] * M[i1] * ethetap;
|
|
1045
|
+
LGAMMA[i0] += 2.0 * M[i1] * etheta;
|
|
1046
|
+
LGAMMA[i1] += 2.0 * M[i0] * etheta;
|
|
1047
|
+
OSMOT += M[i0] * M[i1] * (etheta + I * ethetap);
|
|
1048
|
+
/*
|
|
1049
|
+
F += M[i0]*M[i1]*ETHETAP(z0, z1, I);
|
|
1050
|
+
LGAMMA[i0] += 2.0*M[i1]*(ETHETA(z0, z1, I) );
|
|
1051
|
+
LGAMMA[i1] += 2.0*M[i0]*(ETHETA(z0, z1, I) );
|
|
1052
|
+
OSMOT += M[i0]*M[i1]*(ETHETA(z0, z1, I) + I*ETHETAP(z0, z1, I) );
|
|
1053
|
+
*/
|
|
1054
|
+
}
|
|
1055
|
+
break;
|
|
1056
|
+
case TYPE_PSI:
|
|
1057
|
+
i2 = pitz_params[i]->ispec[2];
|
|
1058
|
+
if (IPRSNT[i2] == FALSE)
|
|
1059
|
+
continue;
|
|
1060
|
+
LGAMMA[i0] += M[i1] * M[i2] * param;
|
|
1061
|
+
LGAMMA[i1] += M[i0] * M[i2] * param;
|
|
1062
|
+
LGAMMA[i2] += M[i0] * M[i1] * param;
|
|
1063
|
+
OSMOT += M[i0] * M[i1] * M[i2] * param;
|
|
1064
|
+
break;
|
|
1065
|
+
case TYPE_LAMBDA:
|
|
1066
|
+
LGAMMA[i0] += M[i1] * param * pitz_params[i]->ln_coef[0];
|
|
1067
|
+
LGAMMA[i1] += M[i0] * param * pitz_params[i]->ln_coef[1];
|
|
1068
|
+
OSMOT += M[i0] * M[i1] * param * pitz_params[i]->os_coef;
|
|
1069
|
+
break;
|
|
1070
|
+
case TYPE_ZETA:
|
|
1071
|
+
i2 = pitz_params[i]->ispec[2];
|
|
1072
|
+
if (IPRSNT[i2] == FALSE)
|
|
1073
|
+
continue;
|
|
1074
|
+
LGAMMA[i0] += M[i1] * M[i2] * param;
|
|
1075
|
+
LGAMMA[i1] += M[i0] * M[i2] * param;
|
|
1076
|
+
LGAMMA[i2] += M[i0] * M[i1] * param;
|
|
1077
|
+
OSMOT += M[i0] * M[i1] * M[i2] * param;
|
|
1078
|
+
break;
|
|
1079
|
+
case TYPE_MU:
|
|
1080
|
+
i2 = pitz_params[i]->ispec[2];
|
|
1081
|
+
if (IPRSNT[i2] == FALSE)
|
|
1082
|
+
continue;
|
|
1083
|
+
|
|
1084
|
+
LGAMMA[i0] += M[i1] * M[i2] * param * pitz_params[i]->ln_coef[0];
|
|
1085
|
+
LGAMMA[i1] += M[i0] * M[i2] * param * pitz_params[i]->ln_coef[1];
|
|
1086
|
+
LGAMMA[i2] += M[i0] * M[i1] * param * pitz_params[i]->ln_coef[2];
|
|
1087
|
+
OSMOT += M[i0] * M[i1] * M[i2] * param * pitz_params[i]->os_coef;
|
|
1088
|
+
break;
|
|
1089
|
+
case TYPE_ETA:
|
|
1090
|
+
i2 = pitz_params[i]->ispec[2];
|
|
1091
|
+
if (IPRSNT[i2] == FALSE)
|
|
1092
|
+
continue;
|
|
1093
|
+
LGAMMA[i0] += M[i1] * M[i2] * param;
|
|
1094
|
+
LGAMMA[i1] += M[i0] * M[i2] * param;
|
|
1095
|
+
LGAMMA[i2] += M[i0] * M[i1] * param;
|
|
1096
|
+
OSMOT += M[i0] * M[i1] * M[i2] * param;
|
|
1097
|
+
break;
|
|
1098
|
+
case TYPE_ALPHAS:
|
|
1099
|
+
break;
|
|
1100
|
+
case TYPE_Other:
|
|
1101
|
+
default:
|
|
1102
|
+
error_msg("TYPE_Other in pitz_param list.", STOP);
|
|
1103
|
+
break;
|
|
1104
|
+
}
|
|
1105
|
+
F += F_var;
|
|
1106
|
+
F1 += F_var;
|
|
1107
|
+
F2 += F_var;
|
|
1108
|
+
}
|
|
1109
|
+
|
|
1110
|
+
/*
|
|
1111
|
+
* Add F and CSUM terms to LGAMMA
|
|
1112
|
+
*/
|
|
1113
|
+
|
|
1114
|
+
for (i = 0; i < count_cations; i++)
|
|
1115
|
+
{
|
|
1116
|
+
if (!IPRSNT[i])
|
|
1117
|
+
continue;
|
|
1118
|
+
z0 = fabs(spec[i]->z);
|
|
1119
|
+
F_var = (z0 == 1 ? F1 : (z0 == 2.0 ? F2 : F));
|
|
1120
|
+
LGAMMA[i] += z0 * z0 * F_var + z0 * CSUM;
|
|
1121
|
+
}
|
|
1122
|
+
for (i = 2 * (int)s.size(); i < 2 * (int)s.size() + count_anions; i++)
|
|
1123
|
+
{
|
|
1124
|
+
if (!IPRSNT[i])
|
|
1125
|
+
continue;
|
|
1126
|
+
z0 = fabs(spec[i]->z);
|
|
1127
|
+
F_var = (z0 == 1 ? F1 : (z0 == 2.0 ? F2 : F));
|
|
1128
|
+
LGAMMA[i] += z0 * z0 * F_var + z0 * CSUM;
|
|
1129
|
+
}
|
|
1130
|
+
/*
|
|
1131
|
+
C
|
|
1132
|
+
C CONVERT TO MACINNES CONVENTION
|
|
1133
|
+
C
|
|
1134
|
+
*/
|
|
1135
|
+
if (ICON == TRUE)
|
|
1136
|
+
{
|
|
1137
|
+
PHIMAC = LGAMMA[IC] - GAMCLM;
|
|
1138
|
+
/*
|
|
1139
|
+
C
|
|
1140
|
+
C CORRECTED ERROR IN PHIMAC, NOVEMBER, 1989
|
|
1141
|
+
C
|
|
1142
|
+
*/
|
|
1143
|
+
for (i = 0; i < 2 * (int)s.size() + count_anions; i++)
|
|
1144
|
+
{
|
|
1145
|
+
if (IPRSNT[i] == TRUE)
|
|
1146
|
+
{
|
|
1147
|
+
LGAMMA[i] = LGAMMA[i] + spec[i]->z * PHIMAC;
|
|
1148
|
+
}
|
|
1149
|
+
}
|
|
1150
|
+
}
|
|
1151
|
+
|
|
1152
|
+
COSMOT = 1.0 + 2.0 * OSMOT / OSUM;
|
|
1153
|
+
/*
|
|
1154
|
+
C
|
|
1155
|
+
C CALCULATE THE ACTIVITY OF WATER
|
|
1156
|
+
C
|
|
1157
|
+
*/
|
|
1158
|
+
AW = exp(-OSUM * COSMOT / 55.50837);
|
|
1159
|
+
/*
|
|
1160
|
+
if (AW > 1.0)
|
|
1161
|
+
AW = 1.0;
|
|
1162
|
+
*/
|
|
1163
|
+
/*s_h2o->la=log10(AW); */
|
|
1164
|
+
mu_x = I;
|
|
1165
|
+
for (i = 0; i < 2 * (int)s.size() + count_anions; i++)
|
|
1166
|
+
{
|
|
1167
|
+
if (IPRSNT[i] == FALSE)
|
|
1168
|
+
continue;
|
|
1169
|
+
/*spec[i]->lg=LGAMMA[i]*CONV; */
|
|
1170
|
+
spec[i]->lg_pitzer = LGAMMA[i] * CONV;
|
|
1171
|
+
/*
|
|
1172
|
+
output_msg(sformatf( "%d %s:\t%e\t%e\t%e\t%e \n", i, spec[i]->name, M[i], spec[i]->la, spec[i]->lg_pitzer, spec[i]->lg));
|
|
1173
|
+
*/
|
|
1174
|
+
}
|
|
1175
|
+
/*
|
|
1176
|
+
output_msg(sformatf( "OSUM: %e\n", OSUM));
|
|
1177
|
+
output_msg(sformatf( "OSMOT: %e\n", OSMOT));
|
|
1178
|
+
output_msg(sformatf( "COSMOT: %e\n", COSMOT));
|
|
1179
|
+
output_msg(sformatf( "F: %e\n", F));
|
|
1180
|
+
output_msg(sformatf( "AW: %e\n", AW));
|
|
1181
|
+
*/
|
|
1182
|
+
/*
|
|
1183
|
+
*I_X = I;
|
|
1184
|
+
*COSMOT_X = COSMOT;
|
|
1185
|
+
*/
|
|
1186
|
+
return (OK);
|
|
1187
|
+
}
|
|
1188
|
+
#else
|
|
1189
|
+
/* ---------------------------------------------------------------------- */
|
|
1190
|
+
int Phreeqc::
|
|
1191
|
+
pitzer(void)
|
|
1192
|
+
/* ---------------------------------------------------------------------- */
|
|
1193
|
+
{
|
|
1194
|
+
int i, i0, i1, i2;
|
|
1195
|
+
LDBLE param, l_alpha, z0, z1;
|
|
1196
|
+
LDBLE etheta, ethetap;
|
|
1197
|
+
/*
|
|
1198
|
+
LDBLE CONV, XI, XX, OSUM, BIGZ, DI, F, XXX, GAMCLM,
|
|
1199
|
+
CSUM, PHIMAC, OSMOT, BMXP, ETHEAP, CMX, BMX, PHI,
|
|
1200
|
+
BMXPHI, PHIPHI, AW, A, B;
|
|
1201
|
+
*/
|
|
1202
|
+
LDBLE CONV, XX, OSUM, BIGZ, DI, F, F1, F2, F_var, XXX, GAMCLM, CSUM, PHIMAC, OSMOT,
|
|
1203
|
+
B, B1, B2;
|
|
1204
|
+
LDBLE I, TK;
|
|
1205
|
+
/*
|
|
1206
|
+
C
|
|
1207
|
+
C INITIALIZE
|
|
1208
|
+
C
|
|
1209
|
+
*/
|
|
1210
|
+
CONV = 1.0 / LOG_10;
|
|
1211
|
+
XX = 0.0;
|
|
1212
|
+
OSUM = 0.0;
|
|
1213
|
+
I = mu_x;
|
|
1214
|
+
TK = tk_x;
|
|
1215
|
+
/* DH_AB(TK, &A, &B); */
|
|
1216
|
+
/*
|
|
1217
|
+
C
|
|
1218
|
+
C TRANSFER DATA FROM TO M
|
|
1219
|
+
C
|
|
1220
|
+
*/
|
|
1221
|
+
for (size_t j = 0; j < s_list.size(); j++)
|
|
1222
|
+
{
|
|
1223
|
+
i = s_list[j];
|
|
1224
|
+
IPRSNT[i] = FALSE;
|
|
1225
|
+
M[i] = 0.0;
|
|
1226
|
+
if (spec[i] != NULL && spec[i]->in == TRUE)
|
|
1227
|
+
{
|
|
1228
|
+
if (spec[i]->type == EX ||
|
|
1229
|
+
spec[i]->type == SURF || spec[i]->type == SURF_PSI)
|
|
1230
|
+
continue;
|
|
1231
|
+
M[i] = under(spec[i]->lm);
|
|
1232
|
+
if (M[i] > MIN_TOTAL)
|
|
1233
|
+
IPRSNT[i] = TRUE;
|
|
1234
|
+
}
|
|
1235
|
+
}
|
|
1236
|
+
if (ICON == TRUE)
|
|
1237
|
+
{
|
|
1238
|
+
IPRSNT[IC] = TRUE;
|
|
1239
|
+
}
|
|
1240
|
+
/*
|
|
1241
|
+
C
|
|
1242
|
+
C COMPUTE PITZER COEFFICIENTS' TEMPERATURE DEPENDENCE
|
|
1243
|
+
C
|
|
1244
|
+
*/
|
|
1245
|
+
PTEMP(TK);
|
|
1246
|
+
for (size_t j = 0; j < s_list.size(); j++)
|
|
1247
|
+
{
|
|
1248
|
+
int i = s_list[j];
|
|
1249
|
+
LGAMMA[i] = 0.0;
|
|
1250
|
+
XX = XX + M[i] * fabs(spec[i]->z);
|
|
1251
|
+
OSUM = OSUM + M[i];
|
|
1252
|
+
}
|
|
1253
|
+
/*
|
|
1254
|
+
C
|
|
1255
|
+
C EQUATION (8)
|
|
1256
|
+
C
|
|
1257
|
+
*/
|
|
1258
|
+
BIGZ = XX;
|
|
1259
|
+
DI = sqrt(I);
|
|
1260
|
+
/*
|
|
1261
|
+
C
|
|
1262
|
+
C CALCULATE F & GAMCLM
|
|
1263
|
+
C
|
|
1264
|
+
*/
|
|
1265
|
+
B = 1.2;
|
|
1266
|
+
F = F1 = F2 = -A0 * (DI / (1.0 + B * DI) + 2.0 * log(1.0 + B * DI) / B);
|
|
1267
|
+
if (patm_x > 1.0)
|
|
1268
|
+
{
|
|
1269
|
+
LDBLE pap = 0.0;
|
|
1270
|
+
pap = (7e-5 + 1.93e-9 * pow(TK - 250.0, 2.0)) * patm_x;
|
|
1271
|
+
B1 = B - (pap > 0.2 ? 0.2 : pap);
|
|
1272
|
+
if (TK > 263.0)
|
|
1273
|
+
{
|
|
1274
|
+
pap = (9.65e-10 * pow(TK - 263.0, 2.773)) * pow(patm_x, 0.623);
|
|
1275
|
+
//pap = (-5.22e-4 + 7.19e-8 * pow(TK - 263.0, 2.0)) * pow(patm_x, 0.623);
|
|
1276
|
+
}
|
|
1277
|
+
B2 = B - (pap > 0.2 ? 0.2 : pap);
|
|
1278
|
+
if (B1 != 0)
|
|
1279
|
+
F1 = -A0 * (DI / (1.0 + B1 * DI) + 2.0 * log(1.0 + B1 * DI) / B1);
|
|
1280
|
+
if (B2 != 0)
|
|
1281
|
+
F2 = -A0 * (DI / (1.0 + B2 * DI) + 2.0 * log(1.0 + B2 * DI) / B2);
|
|
1282
|
+
}
|
|
1283
|
+
XXX = 2.0 * DI;
|
|
1284
|
+
XXX = (1.0 - (1.0 + XXX - XXX * XXX * 0.5) * exp(-XXX)) / (XXX * XXX);
|
|
1285
|
+
GAMCLM = F1;
|
|
1286
|
+
if (mcb0 != NULL)
|
|
1287
|
+
GAMCLM += I * 2.0 * mcb0->p;
|
|
1288
|
+
if (mcb1 != NULL)
|
|
1289
|
+
GAMCLM += I * 2.0 * mcb1->p * XXX;
|
|
1290
|
+
if (mcc0 != NULL)
|
|
1291
|
+
GAMCLM += 1.5 * mcc0->p * I * I;
|
|
1292
|
+
CSUM = 0.0;
|
|
1293
|
+
OSMOT = -(A0) * pow(I, (LDBLE) 1.5) / (1.0 + B * DI);
|
|
1294
|
+
/*
|
|
1295
|
+
* Calculate ethetas
|
|
1296
|
+
*/
|
|
1297
|
+
if (use_etheta == TRUE)
|
|
1298
|
+
{
|
|
1299
|
+
for (i = 0; i < (int)theta_params.size(); i++)
|
|
1300
|
+
{
|
|
1301
|
+
z0 = theta_params[i]->zj;
|
|
1302
|
+
z1 = theta_params[i]->zk;
|
|
1303
|
+
ETHETAS(z0, z1, I, ðeta, ðetap);
|
|
1304
|
+
theta_params[i]->etheta = etheta;
|
|
1305
|
+
theta_params[i]->ethetap = ethetap;
|
|
1306
|
+
}
|
|
1307
|
+
}
|
|
1308
|
+
/*
|
|
1309
|
+
* Sums for F, LGAMMA, and OSMOT
|
|
1310
|
+
*/
|
|
1311
|
+
for (size_t j = 0; j < param_list.size(); j++)
|
|
1312
|
+
{
|
|
1313
|
+
int i = param_list[j];
|
|
1314
|
+
i0 = pitz_params[i]->ispec[0];
|
|
1315
|
+
i1 = pitz_params[i]->ispec[1];
|
|
1316
|
+
z0 = spec[i0]->z;
|
|
1317
|
+
z1 = spec[i1]->z;
|
|
1318
|
+
param = pitz_params[i]->p;
|
|
1319
|
+
l_alpha = pitz_params[i]->alpha;
|
|
1320
|
+
F_var = 0;
|
|
1321
|
+
switch (pitz_params[i]->type)
|
|
1322
|
+
{
|
|
1323
|
+
case TYPE_B0:
|
|
1324
|
+
LGAMMA[i0] += M[i1] * 2.0 * param;
|
|
1325
|
+
LGAMMA[i1] += M[i0] * 2.0 * param;
|
|
1326
|
+
OSMOT += M[i0] * M[i1] * param;
|
|
1327
|
+
break;
|
|
1328
|
+
case TYPE_B1:
|
|
1329
|
+
if (param != 0.0)
|
|
1330
|
+
{
|
|
1331
|
+
F_var = M[i0] * M[i1] * param * GP(l_alpha * DI) / I;
|
|
1332
|
+
LGAMMA[i0] += M[i1] * 2.0 * param * G(l_alpha * DI);
|
|
1333
|
+
LGAMMA[i1] += M[i0] * 2.0 * param * G(l_alpha * DI);
|
|
1334
|
+
OSMOT += M[i0] * M[i1] * param * exp(-l_alpha * DI);
|
|
1335
|
+
}
|
|
1336
|
+
break;
|
|
1337
|
+
case TYPE_B2:
|
|
1338
|
+
if (param != 0.0)
|
|
1339
|
+
{
|
|
1340
|
+
F_var = M[i0] * M[i1] * param * GP(l_alpha * DI) / I;
|
|
1341
|
+
LGAMMA[i0] += M[i1] * 2.0 * param * G(l_alpha * DI);
|
|
1342
|
+
LGAMMA[i1] += M[i0] * 2.0 * param * G(l_alpha * DI);
|
|
1343
|
+
OSMOT += M[i0] * M[i1] * param * exp(-l_alpha * DI);
|
|
1344
|
+
}
|
|
1345
|
+
break;
|
|
1346
|
+
case TYPE_C0:
|
|
1347
|
+
CSUM +=
|
|
1348
|
+
M[i0] * M[i1] * pitz_params[i]->p / (2.0 *
|
|
1349
|
+
sqrt(fabs(z0 * z1)));
|
|
1350
|
+
LGAMMA[i0] += M[i1] * BIGZ * param / (2.0 * sqrt(fabs(z0 * z1)));
|
|
1351
|
+
LGAMMA[i1] += M[i0] * BIGZ * param / (2.0 * sqrt(fabs(z0 * z1)));
|
|
1352
|
+
OSMOT +=
|
|
1353
|
+
M[i0] * M[i1] * BIGZ * param / (2.0 * sqrt(fabs(z0 * z1)));
|
|
1354
|
+
break;
|
|
1355
|
+
case TYPE_THETA:
|
|
1356
|
+
LGAMMA[i0] += 2.0 * M[i1] * (param /*+ ETHETA(z0, z1, I) */ );
|
|
1357
|
+
LGAMMA[i1] += 2.0 * M[i0] * (param /*+ ETHETA(z0, z1, I) */ );
|
|
1358
|
+
OSMOT += M[i0] * M[i1] * param;
|
|
1359
|
+
break;
|
|
1360
|
+
case TYPE_ETHETA:
|
|
1361
|
+
/*
|
|
1362
|
+
ETHETAS(z0, z1, I, ðeta, ðetap);
|
|
1363
|
+
*/
|
|
1364
|
+
if (use_etheta == TRUE)
|
|
1365
|
+
{
|
|
1366
|
+
etheta = pitz_params[i]->thetas->etheta;
|
|
1367
|
+
ethetap = pitz_params[i]->thetas->ethetap;
|
|
1368
|
+
F_var = M[i0] * M[i1] * ethetap;
|
|
1369
|
+
LGAMMA[i0] += 2.0 * M[i1] * etheta;
|
|
1370
|
+
LGAMMA[i1] += 2.0 * M[i0] * etheta;
|
|
1371
|
+
OSMOT += M[i0] * M[i1] * (etheta + I * ethetap);
|
|
1372
|
+
}
|
|
1373
|
+
break;
|
|
1374
|
+
case TYPE_PSI:
|
|
1375
|
+
i2 = pitz_params[i]->ispec[2];
|
|
1376
|
+
if (IPRSNT[i2] == FALSE)
|
|
1377
|
+
continue;
|
|
1378
|
+
LGAMMA[i0] += M[i1] * M[i2] * param;
|
|
1379
|
+
LGAMMA[i1] += M[i0] * M[i2] * param;
|
|
1380
|
+
LGAMMA[i2] += M[i0] * M[i1] * param;
|
|
1381
|
+
OSMOT += M[i0] * M[i1] * M[i2] * param;
|
|
1382
|
+
break;
|
|
1383
|
+
case TYPE_LAMBDA:
|
|
1384
|
+
LGAMMA[i0] += M[i1] * param * pitz_params[i]->ln_coef[0];
|
|
1385
|
+
LGAMMA[i1] += M[i0] * param * pitz_params[i]->ln_coef[1];
|
|
1386
|
+
OSMOT += M[i0] * M[i1] * param * pitz_params[i]->os_coef;
|
|
1387
|
+
break;
|
|
1388
|
+
case TYPE_ZETA:
|
|
1389
|
+
i2 = pitz_params[i]->ispec[2];
|
|
1390
|
+
if (IPRSNT[i2] == FALSE)
|
|
1391
|
+
continue;
|
|
1392
|
+
LGAMMA[i0] += M[i1] * M[i2] * param;
|
|
1393
|
+
LGAMMA[i1] += M[i0] * M[i2] * param;
|
|
1394
|
+
LGAMMA[i2] += M[i0] * M[i1] * param;
|
|
1395
|
+
OSMOT += M[i0] * M[i1] * M[i2] * param;
|
|
1396
|
+
break;
|
|
1397
|
+
case TYPE_MU:
|
|
1398
|
+
i2 = pitz_params[i]->ispec[2];
|
|
1399
|
+
if (IPRSNT[i2] == FALSE)
|
|
1400
|
+
continue;
|
|
1401
|
+
|
|
1402
|
+
LGAMMA[i0] += M[i1] * M[i2] * param * pitz_params[i]->ln_coef[0];
|
|
1403
|
+
LGAMMA[i1] += M[i0] * M[i2] * param * pitz_params[i]->ln_coef[1];
|
|
1404
|
+
LGAMMA[i2] += M[i0] * M[i1] * param * pitz_params[i]->ln_coef[2];
|
|
1405
|
+
OSMOT += M[i0] * M[i1] * M[i2] * param * pitz_params[i]->os_coef;
|
|
1406
|
+
break;
|
|
1407
|
+
case TYPE_ETA:
|
|
1408
|
+
i2 = pitz_params[i]->ispec[2];
|
|
1409
|
+
if (IPRSNT[i2] == FALSE)
|
|
1410
|
+
continue;
|
|
1411
|
+
LGAMMA[i0] += M[i1] * M[i2] * param;
|
|
1412
|
+
LGAMMA[i1] += M[i0] * M[i2] * param;
|
|
1413
|
+
LGAMMA[i2] += M[i0] * M[i1] * param;
|
|
1414
|
+
OSMOT += M[i0] * M[i1] * M[i2] * param;
|
|
1415
|
+
break;
|
|
1416
|
+
case TYPE_ALPHAS:
|
|
1417
|
+
break;
|
|
1418
|
+
case TYPE_Other:
|
|
1419
|
+
default:
|
|
1420
|
+
error_msg("TYPE_Other in pitz_param list.", STOP);
|
|
1421
|
+
break;
|
|
1422
|
+
}
|
|
1423
|
+
F += F_var;
|
|
1424
|
+
F1 += F_var;
|
|
1425
|
+
F2 += F_var;
|
|
1426
|
+
}
|
|
1427
|
+
|
|
1428
|
+
/*
|
|
1429
|
+
* Add F and CSUM terms to LGAMMA
|
|
1430
|
+
*/
|
|
1431
|
+
for (size_t j = 0; j < ion_list.size(); j++)
|
|
1432
|
+
{
|
|
1433
|
+
int i = ion_list[j];
|
|
1434
|
+
z0 = fabs(spec[i]->z);
|
|
1435
|
+
F_var = (z0 == 1 ? F1 : (z0 == 2.0 ? F2 : F));
|
|
1436
|
+
LGAMMA[i] += z0 * z0 * F_var + z0 * CSUM;
|
|
1437
|
+
}
|
|
1438
|
+
/*
|
|
1439
|
+
C
|
|
1440
|
+
C CONVERT TO MACINNES CONVENTION
|
|
1441
|
+
C
|
|
1442
|
+
*/
|
|
1443
|
+
if (ICON == TRUE)
|
|
1444
|
+
{
|
|
1445
|
+
PHIMAC = LGAMMA[IC] - GAMCLM;
|
|
1446
|
+
/*
|
|
1447
|
+
C
|
|
1448
|
+
C CORRECTED ERROR IN PHIMAC, NOVEMBER, 1989
|
|
1449
|
+
C
|
|
1450
|
+
*/
|
|
1451
|
+
for (size_t j = 0; j < s_list.size(); j++)
|
|
1452
|
+
{
|
|
1453
|
+
int i = s_list[j];
|
|
1454
|
+
LGAMMA[i] = LGAMMA[i] + spec[i]->z * PHIMAC;
|
|
1455
|
+
}
|
|
1456
|
+
}
|
|
1457
|
+
|
|
1458
|
+
COSMOT = 1.0 + 2.0 * OSMOT / OSUM;
|
|
1459
|
+
/*
|
|
1460
|
+
C
|
|
1461
|
+
C CALCULATE THE ACTIVITY OF WATER
|
|
1462
|
+
C
|
|
1463
|
+
*/
|
|
1464
|
+
AW = exp(-OSUM * COSMOT / 55.50837);
|
|
1465
|
+
/*
|
|
1466
|
+
if (AW > 1.0)
|
|
1467
|
+
AW = 1.0;
|
|
1468
|
+
*/
|
|
1469
|
+
/*s_h2o->la=log10(AW); */
|
|
1470
|
+
mu_x = I;
|
|
1471
|
+
for (size_t j = 0; j < s_list.size(); j++)
|
|
1472
|
+
{
|
|
1473
|
+
int i = s_list[j];
|
|
1474
|
+
spec[i]->lg_pitzer = LGAMMA[i] * CONV;
|
|
1475
|
+
}
|
|
1476
|
+
/*
|
|
1477
|
+
*I_X = I;
|
|
1478
|
+
*COSMOT_X = COSMOT;
|
|
1479
|
+
*/
|
|
1480
|
+
return (OK);
|
|
1481
|
+
}
|
|
1482
|
+
#endif
|
|
1483
|
+
/* ---------------------------------------------------------------------- */
|
|
1484
|
+
LDBLE Phreeqc::
|
|
1485
|
+
G(LDBLE L_Y)
|
|
1486
|
+
/* ---------------------------------------------------------------------- */
|
|
1487
|
+
{
|
|
1488
|
+
LDBLE d=0.0;
|
|
1489
|
+
if (L_Y != 0.0)
|
|
1490
|
+
{
|
|
1491
|
+
d = 2.0e0 * (1.0e0 - (1.0e0 + L_Y) * exp(-L_Y)) / (L_Y * L_Y);
|
|
1492
|
+
}
|
|
1493
|
+
|
|
1494
|
+
return (d);
|
|
1495
|
+
}
|
|
1496
|
+
|
|
1497
|
+
/* ---------------------------------------------------------------------- */
|
|
1498
|
+
LDBLE Phreeqc::
|
|
1499
|
+
GP(LDBLE L_Y)
|
|
1500
|
+
/* ---------------------------------------------------------------------- */
|
|
1501
|
+
{
|
|
1502
|
+
LDBLE d=0.0;
|
|
1503
|
+
if (L_Y != 0.0)
|
|
1504
|
+
{
|
|
1505
|
+
d = -2.0e0 * (1.0e0 - (1.0e0 + L_Y + L_Y * L_Y / 2.0e0) * exp(-L_Y)) /
|
|
1506
|
+
(L_Y * L_Y);
|
|
1507
|
+
}
|
|
1508
|
+
return d;
|
|
1509
|
+
}
|
|
1510
|
+
/* ---------------------------------------------------------------------- */
|
|
1511
|
+
int Phreeqc::
|
|
1512
|
+
ETHETAS(LDBLE ZJ, LDBLE ZK, LDBLE I, LDBLE * etheta, LDBLE * ethetap)
|
|
1513
|
+
/* ---------------------------------------------------------------------- */
|
|
1514
|
+
{
|
|
1515
|
+
/* Revised ETHETAS code thanks to Wouter Falkena and the MoReS team, June, 2015 */
|
|
1516
|
+
*etheta = 0.0;
|
|
1517
|
+
*ethetap = 0.0;
|
|
1518
|
+
|
|
1519
|
+
if (ZJ == ZK)
|
|
1520
|
+
return (OK);
|
|
1521
|
+
|
|
1522
|
+
const LDBLE XCON = 6.0e0 * A0 * sqrt(I);
|
|
1523
|
+
const LDBLE ZZ = ZJ * ZK;
|
|
1524
|
+
/*
|
|
1525
|
+
C
|
|
1526
|
+
C NEXT 3 ARE EQUATION (A1)
|
|
1527
|
+
C
|
|
1528
|
+
*/
|
|
1529
|
+
const LDBLE XJK = XCON * ZZ;
|
|
1530
|
+
const LDBLE XJJ = XCON * ZJ * ZJ;
|
|
1531
|
+
const LDBLE XKK = XCON * ZK * ZK;
|
|
1532
|
+
|
|
1533
|
+
/*
|
|
1534
|
+
C
|
|
1535
|
+
C EQUATION (A3)
|
|
1536
|
+
C
|
|
1537
|
+
*/
|
|
1538
|
+
LDBLE JAY_XJK;
|
|
1539
|
+
LDBLE JPRIME_XJK;
|
|
1540
|
+
ETHETA_PARAMS( XJK, JAY_XJK, JPRIME_XJK );
|
|
1541
|
+
|
|
1542
|
+
LDBLE JAY_XJJ;
|
|
1543
|
+
LDBLE JPRIME_XJJ;
|
|
1544
|
+
ETHETA_PARAMS( XJJ, JAY_XJJ, JPRIME_XJJ );
|
|
1545
|
+
|
|
1546
|
+
LDBLE JAY_XKK;
|
|
1547
|
+
LDBLE JPRIME_XKK;
|
|
1548
|
+
ETHETA_PARAMS( XKK, JAY_XKK, JPRIME_XKK );
|
|
1549
|
+
|
|
1550
|
+
*etheta =
|
|
1551
|
+
ZZ * (JAY_XJK - JAY_XJJ / 2.0e0 - JAY_XKK / 2.0e0) / (4.0e0 * I);
|
|
1552
|
+
*ethetap =
|
|
1553
|
+
ZZ * (JPRIME_XJK - JPRIME_XJJ / 2.0e0 -
|
|
1554
|
+
JPRIME_XKK / 2.0e0) / (8.0e0 * I * I) - *etheta / I;
|
|
1555
|
+
|
|
1556
|
+
return (OK);
|
|
1557
|
+
}
|
|
1558
|
+
|
|
1559
|
+
/* ---------------------------------------------------------------------- */
|
|
1560
|
+
void Phreeqc::
|
|
1561
|
+
ETHETA_PARAMS(LDBLE X, LDBLE& JAY, LDBLE& JPRIME )
|
|
1562
|
+
/* ---------------------------------------------------------------------- */
|
|
1563
|
+
/*
|
|
1564
|
+
C
|
|
1565
|
+
C NUMERICAL APPROXIMATION TO THE INTEGRALS IN THE EXPRESSIONS FOR J0
|
|
1566
|
+
C AND J1. CHEBYSHEV APPROXIMATION IS USED. THE CONSTANTS 'AK' ARE
|
|
1567
|
+
C DEFINED IN BLOCK COMMON.
|
|
1568
|
+
C
|
|
1569
|
+
*/
|
|
1570
|
+
/*
|
|
1571
|
+
C
|
|
1572
|
+
C AK IS USED TO CALCULATE HIGHER ORDER ELECTROSTATIC TERMS IN
|
|
1573
|
+
C SUBROUTINE PITZER
|
|
1574
|
+
C
|
|
1575
|
+
*/
|
|
1576
|
+
{
|
|
1577
|
+
static const LDBLE AKX[42] = {
|
|
1578
|
+
1.925154014814667e0, -.060076477753119e0, -.029779077456514e0,
|
|
1579
|
+
-.007299499690937e0, 0.000388260636404e0, 0.000636874599598e0,
|
|
1580
|
+
0.000036583601823e0, -.000045036975204e0, -.000004537895710e0,
|
|
1581
|
+
0.000002937706971e0, 0.000000396566462e0, -.000000202099617e0,
|
|
1582
|
+
-.000000025267769e0, 0.000000013522610e0, 0.000000001229405e0,
|
|
1583
|
+
-.000000000821969e0, -.000000000050847e0, 0.000000000046333e0,
|
|
1584
|
+
0.000000000001943e0, -.000000000002563e0, -.000000000010991e0,
|
|
1585
|
+
0.628023320520852e0, 0.462762985338493e0, 0.150044637187895e0,
|
|
1586
|
+
-.028796057604906e0, -.036552745910311e0, -.001668087945272e0,
|
|
1587
|
+
0.006519840398744e0, 0.001130378079086e0, -.000887171310131e0,
|
|
1588
|
+
-.000242107641309e0, 0.000087294451594e0, 0.000034682122751e0,
|
|
1589
|
+
-.000004583768938e0, -.000003548684306e0, -.000000250453880e0,
|
|
1590
|
+
0.000000216991779e0, 0.000000080779570e0, 0.000000004558555e0,
|
|
1591
|
+
-.000000006944757e0, -.000000002849257e0, 0.000000000237816e0
|
|
1592
|
+
};
|
|
1593
|
+
/*
|
|
1594
|
+
LDBLE PRECISION AK, BK, DK
|
|
1595
|
+
COMMON / MX8 / AK(0:20,2),BK(0:22),DK(0:22)
|
|
1596
|
+
*/
|
|
1597
|
+
const LDBLE *AK;
|
|
1598
|
+
LDBLE L_Z = 0.0;
|
|
1599
|
+
LDBLE L_DZ = 0.0;
|
|
1600
|
+
|
|
1601
|
+
if ( X <= 1.0e0 )
|
|
1602
|
+
{
|
|
1603
|
+
const LDBLE powX0_2 = pow( X, 0.2 );
|
|
1604
|
+
L_Z = 4.0e0 * powX0_2 - 2.0e0;
|
|
1605
|
+
L_DZ = 0.8e0 * powX0_2 / 2.0e0;
|
|
1606
|
+
AK = &AKX[0];
|
|
1607
|
+
}
|
|
1608
|
+
else
|
|
1609
|
+
{
|
|
1610
|
+
const LDBLE powXmin0_1 = pow( X, -0.1 );
|
|
1611
|
+
L_Z = ( 40.0e0 * powXmin0_1 - 22.0e0 ) / 9.0e0;
|
|
1612
|
+
L_DZ = -4.0e0 * powXmin0_1 / 18.0e0;
|
|
1613
|
+
AK = &AKX[21];
|
|
1614
|
+
}
|
|
1615
|
+
|
|
1616
|
+
BK[20] = AK[20];
|
|
1617
|
+
BK[19] = L_Z * AK[20] + AK[19];
|
|
1618
|
+
DK[19] = AK[20];
|
|
1619
|
+
for ( int i = 18; i >= 0; i-- )
|
|
1620
|
+
{
|
|
1621
|
+
BK[i] = L_Z * BK[i + 1] - BK[i + 2] + AK[i];
|
|
1622
|
+
DK[i] = BK[i + 1] + L_Z * DK[i + 1] - DK[i + 2];
|
|
1623
|
+
}
|
|
1624
|
+
|
|
1625
|
+
JAY = X / 4.0e0 - 1.0e0 + 0.5e0 * (BK[0] - BK[2]);
|
|
1626
|
+
JPRIME = X * .25e0 + L_DZ * (DK[0] - DK[2]);
|
|
1627
|
+
}
|
|
1628
|
+
|
|
1629
|
+
/* ---------------------------------------------------------------------- */
|
|
1630
|
+
int Phreeqc::
|
|
1631
|
+
pitzer_clean_up(void)
|
|
1632
|
+
/* ---------------------------------------------------------------------- */
|
|
1633
|
+
{
|
|
1634
|
+
/*
|
|
1635
|
+
* Free all allocated memory, except strings
|
|
1636
|
+
*/
|
|
1637
|
+
int i;
|
|
1638
|
+
for (i = 0; i < (int)pitz_params.size(); i++)
|
|
1639
|
+
{
|
|
1640
|
+
delete pitz_params[i];
|
|
1641
|
+
}
|
|
1642
|
+
pitz_param_map.clear();
|
|
1643
|
+
pitz_params.clear();
|
|
1644
|
+
for (i = 0; i < (int)theta_params.size(); i++)
|
|
1645
|
+
{
|
|
1646
|
+
delete theta_params[i];
|
|
1647
|
+
}
|
|
1648
|
+
theta_params.clear();
|
|
1649
|
+
LGAMMA.clear();
|
|
1650
|
+
IPRSNT.clear();
|
|
1651
|
+
spec.clear();
|
|
1652
|
+
if (aphi != NULL)
|
|
1653
|
+
{
|
|
1654
|
+
delete aphi;
|
|
1655
|
+
aphi = NULL;
|
|
1656
|
+
}
|
|
1657
|
+
M.clear();
|
|
1658
|
+
|
|
1659
|
+
return OK;
|
|
1660
|
+
}
|
|
1661
|
+
|
|
1662
|
+
/* ---------------------------------------------------------------------- */
|
|
1663
|
+
int Phreeqc::
|
|
1664
|
+
set_pz(int initial)
|
|
1665
|
+
/* ---------------------------------------------------------------------- */
|
|
1666
|
+
{
|
|
1667
|
+
/*
|
|
1668
|
+
* Sets initial guesses for unknowns if initial == TRUE
|
|
1669
|
+
* Revises guesses whether initial is true or not
|
|
1670
|
+
*/
|
|
1671
|
+
int i;
|
|
1672
|
+
cxxSolution *solution_ptr;
|
|
1673
|
+
/*
|
|
1674
|
+
* Set initial log concentrations to zero
|
|
1675
|
+
*/
|
|
1676
|
+
iterations = -1;
|
|
1677
|
+
solution_ptr = use.Get_solution_ptr();
|
|
1678
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
1679
|
+
{
|
|
1680
|
+
s_x[i]->lm = LOG_ZERO_MOLALITY;
|
|
1681
|
+
s_x[i]->lg_pitzer = 0.0;
|
|
1682
|
+
}
|
|
1683
|
+
if (initial == TRUE || set_and_run_attempt > 0)
|
|
1684
|
+
{
|
|
1685
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
1686
|
+
{
|
|
1687
|
+
s_x[i]->lg = 0.0;
|
|
1688
|
+
}
|
|
1689
|
+
}
|
|
1690
|
+
/*
|
|
1691
|
+
* Set master species activities
|
|
1692
|
+
*/
|
|
1693
|
+
|
|
1694
|
+
tc_x = solution_ptr->Get_tc();
|
|
1695
|
+
tk_x = tc_x + 273.15;
|
|
1696
|
+
|
|
1697
|
+
patm_x = solution_ptr->Get_patm(); // done in calc_rho_0(tc, pa)
|
|
1698
|
+
potV_x = solution_ptr->Get_potV(); // added in DL_pitz
|
|
1699
|
+
|
|
1700
|
+
/*
|
|
1701
|
+
* H+, e-, H2O
|
|
1702
|
+
*/
|
|
1703
|
+
mass_water_aq_x = solution_ptr->Get_mass_water();
|
|
1704
|
+
mu_x = solution_ptr->Get_mu();
|
|
1705
|
+
s_h2o->moles = mass_water_aq_x / gfw_water;
|
|
1706
|
+
s_h2o->la = log10(solution_ptr->Get_ah2o());
|
|
1707
|
+
AW = pow((LDBLE) 10.0, s_h2o->la);
|
|
1708
|
+
s_hplus->la = -solution_ptr->Get_ph();
|
|
1709
|
+
s_hplus->lm = s_hplus->la;
|
|
1710
|
+
s_hplus->moles = exp(s_hplus->lm * LOG_10) * mass_water_aq_x;
|
|
1711
|
+
s_eminus->la = -solution_ptr->Get_pe();
|
|
1712
|
+
if (initial == TRUE)
|
|
1713
|
+
pitzer_initial_guesses();
|
|
1714
|
+
if (dl_type_x != cxxSurface::NO_DL)
|
|
1715
|
+
initial_surface_water();
|
|
1716
|
+
pitzer_revise_guesses();
|
|
1717
|
+
return (OK);
|
|
1718
|
+
}
|
|
1719
|
+
|
|
1720
|
+
/* ---------------------------------------------------------------------- */
|
|
1721
|
+
int Phreeqc::
|
|
1722
|
+
pitzer_initial_guesses(void)
|
|
1723
|
+
/* ---------------------------------------------------------------------- */
|
|
1724
|
+
{
|
|
1725
|
+
/*
|
|
1726
|
+
* Make initial guesses for activities of master species and
|
|
1727
|
+
* ionic strength
|
|
1728
|
+
*/
|
|
1729
|
+
int i;
|
|
1730
|
+
cxxSolution *solution_ptr;
|
|
1731
|
+
|
|
1732
|
+
solution_ptr = use.Get_solution_ptr();
|
|
1733
|
+
mu_x =
|
|
1734
|
+
s_hplus->moles +
|
|
1735
|
+
exp((solution_ptr->Get_ph() - 14.) * LOG_10) * mass_water_aq_x;
|
|
1736
|
+
mu_x /= mass_water_aq_x;
|
|
1737
|
+
s_h2o->la = 0.0;
|
|
1738
|
+
for (i = 0; i < count_unknowns; i++)
|
|
1739
|
+
{
|
|
1740
|
+
if (x[i] == ph_unknown || x[i] == pe_unknown)
|
|
1741
|
+
continue;
|
|
1742
|
+
if (x[i]->type < CB)
|
|
1743
|
+
{
|
|
1744
|
+
mu_x +=
|
|
1745
|
+
x[i]->moles / mass_water_aq_x * 0.5 * x[i]->master[0]->s->z *
|
|
1746
|
+
x[i]->master[0]->s->z;
|
|
1747
|
+
x[i]->master[0]->s->la = log10(x[i]->moles / mass_water_aq_x);
|
|
1748
|
+
}
|
|
1749
|
+
else if (x[i]->type == CB)
|
|
1750
|
+
{
|
|
1751
|
+
x[i]->master[0]->s->la =
|
|
1752
|
+
log10(0.001 * x[i]->moles / mass_water_aq_x);
|
|
1753
|
+
}
|
|
1754
|
+
else if (x[i]->type == SOLUTION_PHASE_BOUNDARY)
|
|
1755
|
+
{
|
|
1756
|
+
x[i]->master[0]->s->la =
|
|
1757
|
+
log10(0.001 * x[i]->moles / mass_water_aq_x);
|
|
1758
|
+
}
|
|
1759
|
+
else if (x[i]->type == EXCH)
|
|
1760
|
+
{
|
|
1761
|
+
if (x[i]->moles <= 0)
|
|
1762
|
+
{
|
|
1763
|
+
x[i]->master[0]->s->la = MIN_RELATED_LOG_ACTIVITY;
|
|
1764
|
+
}
|
|
1765
|
+
else
|
|
1766
|
+
{
|
|
1767
|
+
x[i]->master[0]->s->la = log10(x[i]->moles);
|
|
1768
|
+
}
|
|
1769
|
+
}
|
|
1770
|
+
else if (x[i]->type == SURFACE)
|
|
1771
|
+
{
|
|
1772
|
+
if (x[i]->moles <= 0)
|
|
1773
|
+
{
|
|
1774
|
+
x[i]->master[0]->s->la = MIN_RELATED_LOG_ACTIVITY;
|
|
1775
|
+
}
|
|
1776
|
+
else
|
|
1777
|
+
{
|
|
1778
|
+
x[i]->master[0]->s->la = log10(0.1 * x[i]->moles);
|
|
1779
|
+
}
|
|
1780
|
+
}
|
|
1781
|
+
else if (x[i]->type == SURFACE_CB)
|
|
1782
|
+
{
|
|
1783
|
+
x[i]->master[0]->s->la = 0.0;
|
|
1784
|
+
}
|
|
1785
|
+
}
|
|
1786
|
+
return (OK);
|
|
1787
|
+
}
|
|
1788
|
+
|
|
1789
|
+
/* ---------------------------------------------------------------------- */
|
|
1790
|
+
int Phreeqc::
|
|
1791
|
+
pitzer_revise_guesses(void)
|
|
1792
|
+
/* ---------------------------------------------------------------------- */
|
|
1793
|
+
{
|
|
1794
|
+
/*
|
|
1795
|
+
* Revise molalities species
|
|
1796
|
+
*/
|
|
1797
|
+
int i;
|
|
1798
|
+
int l_iter, max_iter, repeat, fail;
|
|
1799
|
+
LDBLE weight, f;
|
|
1800
|
+
|
|
1801
|
+
max_iter = 100;
|
|
1802
|
+
if (iterations < 0 && (use.Get_surface_in() || use.Get_exchange_in()))
|
|
1803
|
+
gammas_pz(true); // DL_pitz : for SURF estimates
|
|
1804
|
+
l_iter = 0;
|
|
1805
|
+
repeat = TRUE;
|
|
1806
|
+
fail = FALSE;
|
|
1807
|
+
double d = 2;
|
|
1808
|
+
double logd = log10(d);
|
|
1809
|
+
while (repeat == TRUE && fail == FALSE)
|
|
1810
|
+
{
|
|
1811
|
+
l_iter++;
|
|
1812
|
+
if (debug_set == TRUE)
|
|
1813
|
+
{
|
|
1814
|
+
output_msg(sformatf( "\nBeginning set iteration %d.\n",
|
|
1815
|
+
l_iter));
|
|
1816
|
+
}
|
|
1817
|
+
if (l_iter == max_iter + 1)
|
|
1818
|
+
{
|
|
1819
|
+
log_msg(sformatf(
|
|
1820
|
+
"Did not converge in set, iteration %d.\n",
|
|
1821
|
+
iterations));
|
|
1822
|
+
fail = TRUE;
|
|
1823
|
+
}
|
|
1824
|
+
if (l_iter > 2 * max_iter)
|
|
1825
|
+
{
|
|
1826
|
+
log_msg(sformatf(
|
|
1827
|
+
"Did not converge with relaxed criteria in set.\n"));
|
|
1828
|
+
return (OK);
|
|
1829
|
+
}
|
|
1830
|
+
molalities(TRUE);
|
|
1831
|
+
/*pitzer(); */
|
|
1832
|
+
/*s_h2o->la = 0.0; */
|
|
1833
|
+
/*molalities(TRUE); */
|
|
1834
|
+
mb_sums();
|
|
1835
|
+
if (state < REACTION)
|
|
1836
|
+
{
|
|
1837
|
+
sum_species();
|
|
1838
|
+
}
|
|
1839
|
+
else
|
|
1840
|
+
{
|
|
1841
|
+
for (i = 0; i < count_unknowns; i++)
|
|
1842
|
+
{
|
|
1843
|
+
x[i]->sum = x[i]->f;
|
|
1844
|
+
}
|
|
1845
|
+
}
|
|
1846
|
+
/*n
|
|
1847
|
+
if (debug_set == TRUE) {
|
|
1848
|
+
pr.species = TRUE;
|
|
1849
|
+
pr.all = TRUE;
|
|
1850
|
+
print_species();
|
|
1851
|
+
}
|
|
1852
|
+
*/
|
|
1853
|
+
repeat = FALSE;
|
|
1854
|
+
for (i = 0; i < count_unknowns; i++)
|
|
1855
|
+
{
|
|
1856
|
+
if (x[i] == ph_unknown || x[i] == pe_unknown)
|
|
1857
|
+
continue;
|
|
1858
|
+
if (x[i]->type == MB ||
|
|
1859
|
+
/* x[i]->type == ALK || */
|
|
1860
|
+
x[i]->type == CB ||
|
|
1861
|
+
x[i]->type == SOLUTION_PHASE_BOUNDARY ||
|
|
1862
|
+
x[i]->type == EXCH || x[i]->type == SURFACE)
|
|
1863
|
+
{
|
|
1864
|
+
|
|
1865
|
+
if (debug_set == TRUE)
|
|
1866
|
+
{
|
|
1867
|
+
output_msg(sformatf(
|
|
1868
|
+
"\n\t%5s at beginning of set %d: %e\t%e\t%e\n",
|
|
1869
|
+
x[i]->description, l_iter, (double) x[i]->sum,
|
|
1870
|
+
(double) x[i]->moles,
|
|
1871
|
+
(double) x[i]->master[0]->s->la));
|
|
1872
|
+
}
|
|
1873
|
+
if (fabs(x[i]->moles) < 1e-30)
|
|
1874
|
+
x[i]->moles = 0;
|
|
1875
|
+
f = fabs(x[i]->sum);
|
|
1876
|
+
if (f == 0 && x[i]->moles == 0)
|
|
1877
|
+
{
|
|
1878
|
+
x[i]->master[0]->s->la = MIN_RELATED_LOG_ACTIVITY;
|
|
1879
|
+
continue;
|
|
1880
|
+
}
|
|
1881
|
+
else if (f == 0)
|
|
1882
|
+
{
|
|
1883
|
+
repeat = TRUE;
|
|
1884
|
+
x[i]->master[0]->s->la += logd;
|
|
1885
|
+
if (x[i]->master[0]->s->la < -999.)
|
|
1886
|
+
x[i]->master[0]->s->la = MIN_RELATED_LOG_ACTIVITY;
|
|
1887
|
+
}
|
|
1888
|
+
else if (f > d * fabs(x[i]->moles)
|
|
1889
|
+
|| f < 1.0/d * fabs(x[i]->moles))
|
|
1890
|
+
{
|
|
1891
|
+
weight = (f < 1.0/d * fabs(x[i]->moles)) ? 0.3 : 1.0;
|
|
1892
|
+
if (x[i]->moles <= 0)
|
|
1893
|
+
{
|
|
1894
|
+
x[i]->master[0]->s->la = MIN_RELATED_LOG_ACTIVITY;
|
|
1895
|
+
}
|
|
1896
|
+
else
|
|
1897
|
+
{
|
|
1898
|
+
repeat = TRUE;
|
|
1899
|
+
x[i]->master[0]->s->la +=
|
|
1900
|
+
weight * log10(fabs(x[i]->moles / x[i]->sum));
|
|
1901
|
+
}
|
|
1902
|
+
if (debug_set == TRUE)
|
|
1903
|
+
{
|
|
1904
|
+
output_msg(sformatf(
|
|
1905
|
+
"\t%5s not converged in set %d: %e\t%e\t%e\n",
|
|
1906
|
+
x[i]->description, l_iter,
|
|
1907
|
+
(double) x[i]->sum, (double) x[i]->moles,
|
|
1908
|
+
(double) x[i]->master[0]->s->la));
|
|
1909
|
+
}
|
|
1910
|
+
}
|
|
1911
|
+
}
|
|
1912
|
+
else if (x[i]->type == ALK)
|
|
1913
|
+
{
|
|
1914
|
+
f = total_co2;
|
|
1915
|
+
if (fail == TRUE && f < 1.5 * fabs(x[i]->moles))
|
|
1916
|
+
{
|
|
1917
|
+
continue;
|
|
1918
|
+
}
|
|
1919
|
+
if (f > 1.5 * fabs(x[i]->moles)
|
|
1920
|
+
|| f < 1.0/d * fabs(x[i]->moles))
|
|
1921
|
+
{
|
|
1922
|
+
repeat = TRUE;
|
|
1923
|
+
weight = (f < 1.0/d * fabs(x[i]->moles)) ? 0.3 : 1.0;
|
|
1924
|
+
x[i]->master[0]->s->la += weight *
|
|
1925
|
+
log10(fabs(x[i]->moles / x[i]->sum));
|
|
1926
|
+
if (debug_set == TRUE)
|
|
1927
|
+
{
|
|
1928
|
+
output_msg(sformatf(
|
|
1929
|
+
"%s not converged in set. %e\t%e\t%e\n",
|
|
1930
|
+
x[i]->description, (double) x[i]->sum,
|
|
1931
|
+
(double) x[i]->moles,
|
|
1932
|
+
(double) x[i]->master[0]->s->la));
|
|
1933
|
+
}
|
|
1934
|
+
}
|
|
1935
|
+
}
|
|
1936
|
+
}
|
|
1937
|
+
}
|
|
1938
|
+
log_msg(sformatf( "Iterations in pitzer_revise_guesses: %d\n", l_iter));
|
|
1939
|
+
/*mu_x = mu_unknown->f * 0.5 / mass_water_aq_x; */
|
|
1940
|
+
if (mu_x <= 1e-8)
|
|
1941
|
+
{
|
|
1942
|
+
mu_x = 1e-8;
|
|
1943
|
+
}
|
|
1944
|
+
return (OK);
|
|
1945
|
+
}
|
|
1946
|
+
|
|
1947
|
+
/* ---------------------------------------------------------------------- */
|
|
1948
|
+
int Phreeqc::
|
|
1949
|
+
jacobian_pz(void)
|
|
1950
|
+
/* ---------------------------------------------------------------------- */
|
|
1951
|
+
{ // calculate the derivatives numerically
|
|
1952
|
+
std::vector<double> base;
|
|
1953
|
+
std::vector<class phase*> phase_ptrs;
|
|
1954
|
+
std::vector<class phase> base_phases;
|
|
1955
|
+
cxxGasPhase base_gas_phase;
|
|
1956
|
+
cxxSurface base_surface;
|
|
1957
|
+
LDBLE d, d1, d2;
|
|
1958
|
+
int i, j;
|
|
1959
|
+
Restart:
|
|
1960
|
+
if (use.Get_surface_ptr() != NULL)
|
|
1961
|
+
{
|
|
1962
|
+
base_surface = *use.Get_surface_ptr();
|
|
1963
|
+
}
|
|
1964
|
+
if (use.Get_gas_phase_ptr() != NULL)
|
|
1965
|
+
{
|
|
1966
|
+
cxxGasPhase* gas_phase_ptr = use.Get_gas_phase_ptr();
|
|
1967
|
+
base_gas_phase = *gas_phase_ptr;
|
|
1968
|
+
base_phases.resize(gas_phase_ptr->Get_gas_comps().size());
|
|
1969
|
+
for (size_t i = 0; i < gas_phase_ptr->Get_gas_comps().size(); i++)
|
|
1970
|
+
{
|
|
1971
|
+
const cxxGasComp* gas_comp_ptr = &(gas_phase_ptr->Get_gas_comps()[i]);
|
|
1972
|
+
class phase* phase_ptr = phase_bsearch(gas_comp_ptr->Get_phase_name().c_str(), &j, FALSE);
|
|
1973
|
+
phase_ptrs.push_back(phase_ptr);
|
|
1974
|
+
base_phases[i] = *phase_ptr;
|
|
1975
|
+
}
|
|
1976
|
+
}
|
|
1977
|
+
calculating_deriv = 1;
|
|
1978
|
+
molalities(TRUE);
|
|
1979
|
+
if (full_pitzer == TRUE)
|
|
1980
|
+
{
|
|
1981
|
+
pitzer();
|
|
1982
|
+
}
|
|
1983
|
+
mb_sums();
|
|
1984
|
+
residuals();
|
|
1985
|
+
|
|
1986
|
+
size_t pz_max_unknowns = max_unknowns;
|
|
1987
|
+
base.resize(count_unknowns);
|
|
1988
|
+
for (i = 0; i < count_unknowns; i++)
|
|
1989
|
+
{
|
|
1990
|
+
base[i] = residual[i];
|
|
1991
|
+
}
|
|
1992
|
+
d = 0.0001;
|
|
1993
|
+
d1 = d * LOG_10;
|
|
1994
|
+
d2 = 0;
|
|
1995
|
+
for (i = 0; i < count_unknowns; i++)
|
|
1996
|
+
{
|
|
1997
|
+
switch (x[i]->type)
|
|
1998
|
+
{
|
|
1999
|
+
case MB:
|
|
2000
|
+
case ALK:
|
|
2001
|
+
case CB:
|
|
2002
|
+
case SOLUTION_PHASE_BOUNDARY:
|
|
2003
|
+
case EXCH:
|
|
2004
|
+
case SURFACE:
|
|
2005
|
+
case SURFACE_CB:
|
|
2006
|
+
case SURFACE_CB1:
|
|
2007
|
+
case SURFACE_CB2:
|
|
2008
|
+
x[i]->master[0]->s->la += d;
|
|
2009
|
+
//d2 = d1;
|
|
2010
|
+
d2 = d * LOG_10;
|
|
2011
|
+
break;
|
|
2012
|
+
case AH2O:
|
|
2013
|
+
x[i]->master[0]->s->la += d;
|
|
2014
|
+
//d2 = d1;
|
|
2015
|
+
d2 = d * LOG_10;
|
|
2016
|
+
break;
|
|
2017
|
+
case PITZER_GAMMA:
|
|
2018
|
+
if (!full_pitzer)
|
|
2019
|
+
continue;
|
|
2020
|
+
x[i]->s->lg += d;
|
|
2021
|
+
d2 = d;
|
|
2022
|
+
break;
|
|
2023
|
+
case MH2O:
|
|
2024
|
+
//mass_water_aq_x *= (1 + d);
|
|
2025
|
+
//x[i]->master[0]->s->moles = mass_water_aq_x / gfw_water;
|
|
2026
|
+
//d2 = log(1.0 + d);
|
|
2027
|
+
//break;
|
|
2028
|
+
// DL_pitz
|
|
2029
|
+
d1 = mass_water_aq_x * d;
|
|
2030
|
+
mass_water_aq_x += d1;
|
|
2031
|
+
if (use.Get_surface_in() && dl_type_x == cxxSurface::DONNAN_DL)
|
|
2032
|
+
mass_water_bulk_x += d1;
|
|
2033
|
+
x[i]->master[0]->s->moles = mass_water_aq_x / gfw_water;
|
|
2034
|
+
//d2 = log(1.0 + d);
|
|
2035
|
+
d2 = d1;
|
|
2036
|
+
break;
|
|
2037
|
+
case MH:
|
|
2038
|
+
if (pitzer_pe == TRUE)
|
|
2039
|
+
{
|
|
2040
|
+
s_eminus->la += d;
|
|
2041
|
+
//d2 = d1;
|
|
2042
|
+
d2 = d * LOG_10;
|
|
2043
|
+
break;
|
|
2044
|
+
}
|
|
2045
|
+
else
|
|
2046
|
+
{
|
|
2047
|
+
continue;
|
|
2048
|
+
}
|
|
2049
|
+
case GAS_MOLES:
|
|
2050
|
+
if (gas_in == FALSE)
|
|
2051
|
+
continue;
|
|
2052
|
+
d2 = (x[i]->moles > 1 ? 1 : 30);
|
|
2053
|
+
d2 *= d * x[i]->moles;
|
|
2054
|
+
d2 = (d2 < ineq_tol ? ineq_tol : d2);
|
|
2055
|
+
//if (d2 < 1e-14)
|
|
2056
|
+
// d2 = 1e-14;
|
|
2057
|
+
x[i]->moles += d2;
|
|
2058
|
+
break;
|
|
2059
|
+
case MU:
|
|
2060
|
+
//continue;
|
|
2061
|
+
d2 = d * mu_x;
|
|
2062
|
+
mu_x += d2;
|
|
2063
|
+
//k_temp(tc_x, patm_x);
|
|
2064
|
+
gammas_pz(false);
|
|
2065
|
+
break;
|
|
2066
|
+
case PP:
|
|
2067
|
+
continue;
|
|
2068
|
+
break;
|
|
2069
|
+
case SS_MOLES:
|
|
2070
|
+
//continue;
|
|
2071
|
+
//break;
|
|
2072
|
+
if (x[i]->ss_in == FALSE)
|
|
2073
|
+
continue;
|
|
2074
|
+
for (j = 0; j < count_unknowns; j++)
|
|
2075
|
+
{
|
|
2076
|
+
delta[j] = 0.0;
|
|
2077
|
+
}
|
|
2078
|
+
d2 = d * 10 * x[i]->moles;
|
|
2079
|
+
delta[i] = d2;
|
|
2080
|
+
reset();
|
|
2081
|
+
d2 = delta[i];
|
|
2082
|
+
break;
|
|
2083
|
+
}
|
|
2084
|
+
molalities(TRUE);
|
|
2085
|
+
if (max_unknowns > pz_max_unknowns)
|
|
2086
|
+
{
|
|
2087
|
+
base.clear();
|
|
2088
|
+
gammas_pz(false);
|
|
2089
|
+
jacobian_sums();
|
|
2090
|
+
goto Restart;
|
|
2091
|
+
}
|
|
2092
|
+
if (full_pitzer == TRUE)
|
|
2093
|
+
pitzer();
|
|
2094
|
+
mb_sums();
|
|
2095
|
+
residuals();
|
|
2096
|
+
for (j = 0; j < count_unknowns; j++)
|
|
2097
|
+
{
|
|
2098
|
+
my_array[(size_t)j * (count_unknowns + 1) + (size_t)i] = -(residual[j] - base[j]) / d2;
|
|
2099
|
+
if (x[i]->type == MH2O) // DL_pitz
|
|
2100
|
+
my_array[(size_t)j * (count_unknowns + 1) + (size_t)i] *= mass_water_aq_x;
|
|
2101
|
+
}
|
|
2102
|
+
switch (x[i]->type)
|
|
2103
|
+
{
|
|
2104
|
+
case MB:
|
|
2105
|
+
case ALK:
|
|
2106
|
+
case CB:
|
|
2107
|
+
case SOLUTION_PHASE_BOUNDARY:
|
|
2108
|
+
case EXCH:
|
|
2109
|
+
case SURFACE:
|
|
2110
|
+
case SURFACE_CB:
|
|
2111
|
+
case SURFACE_CB1:
|
|
2112
|
+
case SURFACE_CB2:
|
|
2113
|
+
case AH2O:
|
|
2114
|
+
x[i]->master[0]->s->la -= d;
|
|
2115
|
+
break;
|
|
2116
|
+
case MH:
|
|
2117
|
+
s_eminus->la -= d;
|
|
2118
|
+
if (my_array[(size_t)i * (count_unknowns + 1) + (size_t)i] == 0)
|
|
2119
|
+
{
|
|
2120
|
+
my_array[(size_t)i * (count_unknowns + 1) + (size_t)i] =
|
|
2121
|
+
exp(s_h2->lm * LOG_10) * 2;
|
|
2122
|
+
}
|
|
2123
|
+
break;
|
|
2124
|
+
case PITZER_GAMMA:
|
|
2125
|
+
x[i]->s->lg -= d;
|
|
2126
|
+
break;
|
|
2127
|
+
case MH2O:
|
|
2128
|
+
//mass_water_aq_x /= (1 + d);
|
|
2129
|
+
//x[i]->master[0]->s->moles = mass_water_aq_x / gfw_water;
|
|
2130
|
+
//break;
|
|
2131
|
+
//DL_pitz
|
|
2132
|
+
mass_water_aq_x -= d1;
|
|
2133
|
+
if (use.Get_surface_in() && dl_type_x == cxxSurface::DONNAN_DL)
|
|
2134
|
+
mass_water_bulk_x -= d1;
|
|
2135
|
+
x[i]->master[0]->s->moles = mass_water_aq_x / gfw_water;
|
|
2136
|
+
break;
|
|
2137
|
+
case MU:
|
|
2138
|
+
mu_x -= d2;
|
|
2139
|
+
//k_temp(tc_x, patm_x);
|
|
2140
|
+
gammas_pz(false);
|
|
2141
|
+
break;
|
|
2142
|
+
case GAS_MOLES:
|
|
2143
|
+
if (gas_in == FALSE)
|
|
2144
|
+
continue;
|
|
2145
|
+
x[i]->moles -= d2;
|
|
2146
|
+
break;
|
|
2147
|
+
case SS_MOLES:
|
|
2148
|
+
delta[i] = -d2;
|
|
2149
|
+
reset();
|
|
2150
|
+
break;
|
|
2151
|
+
}
|
|
2152
|
+
if (use.Get_surface_ptr() != NULL)
|
|
2153
|
+
{
|
|
2154
|
+
*use.Get_surface_ptr() = base_surface;
|
|
2155
|
+
}
|
|
2156
|
+
if (use.Get_gas_phase_ptr() != NULL)
|
|
2157
|
+
{
|
|
2158
|
+
*use.Get_gas_phase_ptr() = base_gas_phase;
|
|
2159
|
+
for (size_t g = 0; g < base_phases.size(); g++)
|
|
2160
|
+
{
|
|
2161
|
+
*phase_ptrs[g] = base_phases[g];
|
|
2162
|
+
}
|
|
2163
|
+
}
|
|
2164
|
+
//molalities(TRUE);
|
|
2165
|
+
//if (full_pitzer == TRUE)
|
|
2166
|
+
// pitzer();
|
|
2167
|
+
//mb_sums();
|
|
2168
|
+
//residuals();
|
|
2169
|
+
}
|
|
2170
|
+
molalities(TRUE);
|
|
2171
|
+
if (full_pitzer == TRUE)
|
|
2172
|
+
pitzer();
|
|
2173
|
+
mb_sums();
|
|
2174
|
+
residuals();
|
|
2175
|
+
//for (i = 0; i < count_unknowns; i++)
|
|
2176
|
+
//{
|
|
2177
|
+
// //Debugging
|
|
2178
|
+
// if (fabs(2.0 * (residual[i] - base[i]) / (residual[i] + base[i])) > 1e-2 &&
|
|
2179
|
+
// fabs(residual[i]) + fabs(base[i]) > 1e-6)
|
|
2180
|
+
// {
|
|
2181
|
+
// std::cerr << iterations << ": " << x[i]->description << " " << residual[i] << " " << base[i] << std::endl;
|
|
2182
|
+
// }
|
|
2183
|
+
//}
|
|
2184
|
+
base.clear();
|
|
2185
|
+
calculating_deriv = 0;
|
|
2186
|
+
return OK;
|
|
2187
|
+
}
|
|
2188
|
+
|
|
2189
|
+
/* ---------------------------------------------------------------------- */
|
|
2190
|
+
int Phreeqc::
|
|
2191
|
+
model_pz(void)
|
|
2192
|
+
/* ---------------------------------------------------------------------- */
|
|
2193
|
+
{
|
|
2194
|
+
/*
|
|
2195
|
+
* model is called after the equations have been set up by prep
|
|
2196
|
+
* and initial guesses have been made in set.
|
|
2197
|
+
*
|
|
2198
|
+
* Here is the outline of the calculation sequence:
|
|
2199
|
+
* residuals--residuals are calculated, if small we are done
|
|
2200
|
+
* sum_jacobian--jacobian is calculated
|
|
2201
|
+
* ineq--inequality solver is called
|
|
2202
|
+
* reset--estimates of unknowns revised, if changes are small solution
|
|
2203
|
+
* has been found, usually convergence is found in residuals.
|
|
2204
|
+
* gammas--new activity coefficients
|
|
2205
|
+
* molalities--calculate molalities
|
|
2206
|
+
* mb_sums--calculate mass-balance sums
|
|
2207
|
+
* mb_gases--decide if gas_phase exists
|
|
2208
|
+
* mb_ss--decide if solid_solutions exists
|
|
2209
|
+
* switch_bases--check to see if new basis species is needed
|
|
2210
|
+
* reprep--rewrite equations with new basis species if needed
|
|
2211
|
+
* pitzer_revise_guesses--revise unknowns to get initial mole balance
|
|
2212
|
+
* check_residuals--check convergence one last time
|
|
2213
|
+
* sum_species--calculate sums of elements from species concentrations
|
|
2214
|
+
*
|
|
2215
|
+
* An additional pass through may be needed if unstable phases still exist
|
|
2216
|
+
* in the phase assemblage.
|
|
2217
|
+
*/
|
|
2218
|
+
int l_kode, return_kode;
|
|
2219
|
+
int r;
|
|
2220
|
+
int count_infeasible, count_basis_change;
|
|
2221
|
+
int debug_model_save;
|
|
2222
|
+
int mass_water_switch_save;
|
|
2223
|
+
|
|
2224
|
+
/* debug_model = TRUE; */
|
|
2225
|
+
/* debug_prep = TRUE; */
|
|
2226
|
+
/* debug_set = TRUE; */
|
|
2227
|
+
/* mass_water_switch == TRUE, mass of water is constant */
|
|
2228
|
+
mass_water_switch_save = mass_water_switch;
|
|
2229
|
+
if (mass_water_switch_save == FALSE && delay_mass_water == TRUE)
|
|
2230
|
+
{
|
|
2231
|
+
mass_water_switch = TRUE;
|
|
2232
|
+
}
|
|
2233
|
+
debug_model_save = debug_model;
|
|
2234
|
+
pe_step_size_now = pe_step_size;
|
|
2235
|
+
step_size_now = step_size;
|
|
2236
|
+
#ifdef NPP
|
|
2237
|
+
if (!use.Get_kinetics_in()) status(0, NULL);
|
|
2238
|
+
#else
|
|
2239
|
+
status(0, NULL);
|
|
2240
|
+
#endif
|
|
2241
|
+
iterations = 0;
|
|
2242
|
+
gamma_iterations = 0;
|
|
2243
|
+
count_basis_change = count_infeasible = 0;
|
|
2244
|
+
stop_program = FALSE;
|
|
2245
|
+
remove_unstable_phases = FALSE;
|
|
2246
|
+
if (always_full_pitzer == TRUE)
|
|
2247
|
+
{
|
|
2248
|
+
full_pitzer = TRUE;
|
|
2249
|
+
}
|
|
2250
|
+
else
|
|
2251
|
+
{
|
|
2252
|
+
full_pitzer = FALSE;
|
|
2253
|
+
}
|
|
2254
|
+
#if defined(PITZER_LISTS)
|
|
2255
|
+
//pitzer_make_lists();
|
|
2256
|
+
#endif
|
|
2257
|
+
for (;;)
|
|
2258
|
+
{
|
|
2259
|
+
mb_gases();
|
|
2260
|
+
mb_ss();
|
|
2261
|
+
l_kode = 1;
|
|
2262
|
+
while ((r = residuals()) != CONVERGED
|
|
2263
|
+
|| remove_unstable_phases == TRUE)
|
|
2264
|
+
{
|
|
2265
|
+
#if defined(PHREEQCI_GUI)
|
|
2266
|
+
PhreeqcIWait(this);
|
|
2267
|
+
#endif
|
|
2268
|
+
iterations++;
|
|
2269
|
+
overall_iterations++;
|
|
2270
|
+
if (iterations > itmax - 1 && debug_model == FALSE
|
|
2271
|
+
&& pr.logfile == TRUE)
|
|
2272
|
+
{
|
|
2273
|
+
set_forward_output_to_log(TRUE);
|
|
2274
|
+
debug_model = TRUE;
|
|
2275
|
+
}
|
|
2276
|
+
if (debug_model == TRUE)
|
|
2277
|
+
{
|
|
2278
|
+
output_msg(sformatf(
|
|
2279
|
+
"\nIteration %d\tStep_size = %f\n", iterations,
|
|
2280
|
+
(double) step_size_now));
|
|
2281
|
+
output_msg(sformatf( "\t\tPe_step_size = %f\n\n",
|
|
2282
|
+
(double) pe_step_size_now));
|
|
2283
|
+
}
|
|
2284
|
+
/*
|
|
2285
|
+
* Iterations exceeded
|
|
2286
|
+
*/
|
|
2287
|
+
if (iterations > itmax)
|
|
2288
|
+
{
|
|
2289
|
+
error_string = sformatf( "Maximum iterations exceeded, %d\n",
|
|
2290
|
+
itmax);
|
|
2291
|
+
warning_msg(error_string);
|
|
2292
|
+
stop_program = TRUE;
|
|
2293
|
+
break;
|
|
2294
|
+
}
|
|
2295
|
+
/*
|
|
2296
|
+
* Calculate jacobian
|
|
2297
|
+
*/
|
|
2298
|
+
gammas_pz(false); // appt: no gammas_a_f here
|
|
2299
|
+
jacobian_sums();
|
|
2300
|
+
jacobian_pz();
|
|
2301
|
+
/*
|
|
2302
|
+
* Full matrix with pure phases
|
|
2303
|
+
*/
|
|
2304
|
+
if (r == OK || remove_unstable_phases == TRUE)
|
|
2305
|
+
{
|
|
2306
|
+
return_kode = ineq(l_kode);
|
|
2307
|
+
if (return_kode != OK)
|
|
2308
|
+
{
|
|
2309
|
+
if (debug_model == TRUE)
|
|
2310
|
+
{
|
|
2311
|
+
output_msg(sformatf(
|
|
2312
|
+
"Ineq had infeasible solution, "
|
|
2313
|
+
"kode %d, iteration %d\n", return_kode,
|
|
2314
|
+
iterations));
|
|
2315
|
+
}
|
|
2316
|
+
log_msg(sformatf( "Ineq had infeasible solution, "
|
|
2317
|
+
"kode %d, iteration %d\n", return_kode,
|
|
2318
|
+
iterations));
|
|
2319
|
+
count_infeasible++;
|
|
2320
|
+
}
|
|
2321
|
+
if (return_kode == 2)
|
|
2322
|
+
{
|
|
2323
|
+
ineq(0);
|
|
2324
|
+
}
|
|
2325
|
+
reset();
|
|
2326
|
+
}
|
|
2327
|
+
// appt calculate gammas_a_f here
|
|
2328
|
+
gammas_pz(true);
|
|
2329
|
+
if (full_pitzer == TRUE)
|
|
2330
|
+
pitzer();
|
|
2331
|
+
if (always_full_pitzer == TRUE)
|
|
2332
|
+
{
|
|
2333
|
+
full_pitzer = TRUE;
|
|
2334
|
+
}
|
|
2335
|
+
else
|
|
2336
|
+
{
|
|
2337
|
+
full_pitzer = FALSE;
|
|
2338
|
+
}
|
|
2339
|
+
if (molalities(FALSE) == ERROR)
|
|
2340
|
+
{
|
|
2341
|
+
pitzer_revise_guesses();
|
|
2342
|
+
}
|
|
2343
|
+
if (use.Get_surface_ptr() != NULL &&
|
|
2344
|
+
use.Get_surface_ptr()->Get_dl_type() != cxxSurface::NO_DL &&
|
|
2345
|
+
use.Get_surface_ptr()->Get_related_phases())
|
|
2346
|
+
initial_surface_water();
|
|
2347
|
+
mb_sums();
|
|
2348
|
+
mb_gases();
|
|
2349
|
+
mb_ss();
|
|
2350
|
+
/*
|
|
2351
|
+
* Switch bases if necessary
|
|
2352
|
+
*/
|
|
2353
|
+
if (switch_bases() == TRUE)
|
|
2354
|
+
{
|
|
2355
|
+
|
|
2356
|
+
count_basis_change++;
|
|
2357
|
+
count_unknowns -= (int)this->s_x.size();
|
|
2358
|
+
reprep();
|
|
2359
|
+
full_pitzer = false;
|
|
2360
|
+
}
|
|
2361
|
+
//debug
|
|
2362
|
+
//species_list_sort();
|
|
2363
|
+
//sum_species();
|
|
2364
|
+
//print_species();
|
|
2365
|
+
//print_exchange();
|
|
2366
|
+
//print_surface();
|
|
2367
|
+
|
|
2368
|
+
if (stop_program == TRUE)
|
|
2369
|
+
{
|
|
2370
|
+
break;
|
|
2371
|
+
}
|
|
2372
|
+
}
|
|
2373
|
+
/*
|
|
2374
|
+
* Check for stop_program
|
|
2375
|
+
*/
|
|
2376
|
+
|
|
2377
|
+
if (stop_program == TRUE)
|
|
2378
|
+
{
|
|
2379
|
+
break;
|
|
2380
|
+
}
|
|
2381
|
+
if (check_residuals() == ERROR)
|
|
2382
|
+
{
|
|
2383
|
+
stop_program = TRUE;
|
|
2384
|
+
break;
|
|
2385
|
+
}
|
|
2386
|
+
/* remove_unstable_phases is set in check_residuals */
|
|
2387
|
+
if (remove_unstable_phases == FALSE && mass_water_switch_save == FALSE
|
|
2388
|
+
&& mass_water_switch == TRUE)
|
|
2389
|
+
{
|
|
2390
|
+
log_msg(sformatf(
|
|
2391
|
+
"\nChanging water switch to FALSE. Iteration %d.\n",
|
|
2392
|
+
iterations));
|
|
2393
|
+
mass_water_switch = FALSE;
|
|
2394
|
+
continue;
|
|
2395
|
+
}
|
|
2396
|
+
gamma_iterations++;
|
|
2397
|
+
if (gamma_iterations > itmax)
|
|
2398
|
+
{
|
|
2399
|
+
error_string = sformatf( "Maximum gamma iterations exceeded, %d\n",
|
|
2400
|
+
itmax);
|
|
2401
|
+
warning_msg(error_string);
|
|
2402
|
+
stop_program = TRUE;
|
|
2403
|
+
break;
|
|
2404
|
+
}
|
|
2405
|
+
if (check_gammas_pz() != TRUE)
|
|
2406
|
+
{
|
|
2407
|
+
full_pitzer = TRUE;
|
|
2408
|
+
continue;
|
|
2409
|
+
}
|
|
2410
|
+
if (remove_unstable_phases == FALSE)
|
|
2411
|
+
break;
|
|
2412
|
+
if (debug_model == TRUE)
|
|
2413
|
+
{
|
|
2414
|
+
output_msg(sformatf(
|
|
2415
|
+
"\nRemoving unstable phases. Iteration %d.\n",
|
|
2416
|
+
iterations));
|
|
2417
|
+
}
|
|
2418
|
+
log_msg(sformatf( "\nRemoving unstable phases. Iteration %d.\n",
|
|
2419
|
+
iterations));
|
|
2420
|
+
}
|
|
2421
|
+
log_msg(sformatf( "\nNumber of infeasible solutions: %d\n",
|
|
2422
|
+
count_infeasible));
|
|
2423
|
+
log_msg(sformatf( "Number of basis changes: %d\n\n",
|
|
2424
|
+
count_basis_change));
|
|
2425
|
+
log_msg(sformatf( "Number of iterations: %d\n", iterations));
|
|
2426
|
+
log_msg(sformatf( "Number of gamma iterations: %d\n\n", gamma_iterations));
|
|
2427
|
+
debug_model = debug_model_save;
|
|
2428
|
+
set_forward_output_to_log(FALSE);
|
|
2429
|
+
if (stop_program == TRUE)
|
|
2430
|
+
{
|
|
2431
|
+
return (ERROR);
|
|
2432
|
+
}
|
|
2433
|
+
return (OK);
|
|
2434
|
+
}
|
|
2435
|
+
|
|
2436
|
+
/* ---------------------------------------------------------------------- */
|
|
2437
|
+
int Phreeqc::
|
|
2438
|
+
check_gammas_pz(void)
|
|
2439
|
+
/* ---------------------------------------------------------------------- */
|
|
2440
|
+
{
|
|
2441
|
+
LDBLE /*old_aw,*/ old_mu, tol;
|
|
2442
|
+
int converge, i;
|
|
2443
|
+
|
|
2444
|
+
old_mu = mu_x;
|
|
2445
|
+
pitzer();
|
|
2446
|
+
molalities(TRUE);
|
|
2447
|
+
mb_sums();
|
|
2448
|
+
converge = TRUE;
|
|
2449
|
+
tol = convergence_tolerance * 10.;
|
|
2450
|
+
for (i = 0; i < count_unknowns; i++)
|
|
2451
|
+
{
|
|
2452
|
+
if (x[i]->type != PITZER_GAMMA)
|
|
2453
|
+
continue;
|
|
2454
|
+
if (fabs(x[i]->s->lg - x[i]->s->lg_pitzer) > tol)
|
|
2455
|
+
{
|
|
2456
|
+
converge = FALSE;
|
|
2457
|
+
}
|
|
2458
|
+
}
|
|
2459
|
+
if (fabs(old_mu - mu_x) > tol)
|
|
2460
|
+
converge = FALSE;
|
|
2461
|
+
|
|
2462
|
+
if ((pow((LDBLE) 10.0, s_h2o->la) - AW) > tol)
|
|
2463
|
+
converge = FALSE;
|
|
2464
|
+
return converge;
|
|
2465
|
+
}
|
|
2466
|
+
|
|
2467
|
+
/* ---------------------------------------------------------------------- */
|
|
2468
|
+
int Phreeqc::
|
|
2469
|
+
gammas_pz(bool exch_a_f)
|
|
2470
|
+
/* ---------------------------------------------------------------------- */
|
|
2471
|
+
{
|
|
2472
|
+
/*
|
|
2473
|
+
* Need exchange gammas for pitzer
|
|
2474
|
+
*/
|
|
2475
|
+
int i, j;
|
|
2476
|
+
LDBLE coef, equiv;
|
|
2477
|
+
/* Initialize */
|
|
2478
|
+
k_temp(tc_x, patm_x);
|
|
2479
|
+
/*
|
|
2480
|
+
* Calculate activity coefficients
|
|
2481
|
+
*/
|
|
2482
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
2483
|
+
{
|
|
2484
|
+
switch (s_x[i]->gflag)
|
|
2485
|
+
{
|
|
2486
|
+
case 0: /* uncharged */
|
|
2487
|
+
case 1: /* Davies */
|
|
2488
|
+
case 2: /* Extended D-H, WATEQ D-H */
|
|
2489
|
+
case 3: /* Always 1.0 */
|
|
2490
|
+
break;
|
|
2491
|
+
case 4: /* Exchange */
|
|
2492
|
+
/* Now calculated in next loop */
|
|
2493
|
+
break;
|
|
2494
|
+
case 5: /* Always 1.0 */
|
|
2495
|
+
break;
|
|
2496
|
+
case 6: /* Surface */
|
|
2497
|
+
/*
|
|
2498
|
+
* Find moles of sites.
|
|
2499
|
+
* s_x[i]->equiv is stoichiometric coefficient of sites in species
|
|
2500
|
+
*/
|
|
2501
|
+
for (j = 1; s_x[i]->rxn_x.token[j].s != NULL; j++)
|
|
2502
|
+
{
|
|
2503
|
+
if (s_x[i]->rxn_x.token[j].s->type == SURF)
|
|
2504
|
+
{
|
|
2505
|
+
s_x[i]->alk =
|
|
2506
|
+
s_x[i]->rxn_x.token[j].s->primary->unknown->moles;
|
|
2507
|
+
break;
|
|
2508
|
+
}
|
|
2509
|
+
}
|
|
2510
|
+
if (use.Get_surface_ptr()->Get_type() == cxxSurface::CD_MUSIC) // DL_pitz
|
|
2511
|
+
{
|
|
2512
|
+
/* mole fraction */
|
|
2513
|
+
equiv = 1.0;
|
|
2514
|
+
}
|
|
2515
|
+
else
|
|
2516
|
+
{
|
|
2517
|
+
equiv = s_x[i]->equiv;
|
|
2518
|
+
}
|
|
2519
|
+
if (s_x[i]->alk > 0)
|
|
2520
|
+
{
|
|
2521
|
+
s_x[i]->lg = log10(equiv / s_x[i]->alk);
|
|
2522
|
+
s_x[i]->dg = 0.0;
|
|
2523
|
+
}
|
|
2524
|
+
else
|
|
2525
|
+
{
|
|
2526
|
+
s_x[i]->lg = 0.0;
|
|
2527
|
+
s_x[i]->dg = 0.0;
|
|
2528
|
+
}
|
|
2529
|
+
break;
|
|
2530
|
+
case 7: /* LLNL */
|
|
2531
|
+
break;
|
|
2532
|
+
case 8: /* LLNL CO2 */
|
|
2533
|
+
break;
|
|
2534
|
+
case 9: /* activity water */
|
|
2535
|
+
s_x[i]->lg = log10(exp(s_h2o->la * LOG_10) * gfw_water);
|
|
2536
|
+
s_x[i]->dg = 0.0;
|
|
2537
|
+
break;
|
|
2538
|
+
}
|
|
2539
|
+
/*
|
|
2540
|
+
if (mu_unknown != NULL) {
|
|
2541
|
+
if (fabs(residual[mu_unknown->number]) > 0.1 &&
|
|
2542
|
+
fabs(residual[mu_unknown->number])/mu_x > 0.5) {
|
|
2543
|
+
s_x[i]->dg = 0.0;
|
|
2544
|
+
}
|
|
2545
|
+
}
|
|
2546
|
+
*/
|
|
2547
|
+
}
|
|
2548
|
+
/*
|
|
2549
|
+
* calculate exchange gammas
|
|
2550
|
+
*/
|
|
2551
|
+
|
|
2552
|
+
if (use.Get_exchange_ptr() != NULL && exch_a_f) // appt for gammas_a_f
|
|
2553
|
+
{
|
|
2554
|
+
for (i = 0; i < (int)this->s_x.size(); i++)
|
|
2555
|
+
{
|
|
2556
|
+
switch (s_x[i]->gflag)
|
|
2557
|
+
{
|
|
2558
|
+
case 0: /* uncharged */
|
|
2559
|
+
case 1: /* Davies */
|
|
2560
|
+
case 2: /* Extended D-H, WATEQ D-H */
|
|
2561
|
+
case 3: /* Always 1.0 */
|
|
2562
|
+
case 5: /* Always 1.0 */
|
|
2563
|
+
case 6: /* Surface */
|
|
2564
|
+
case 7: /* LLNL */
|
|
2565
|
+
case 8: /* LLNL CO2 */
|
|
2566
|
+
case 9: /* activity water */
|
|
2567
|
+
break;
|
|
2568
|
+
case 4: /* Exchange */
|
|
2569
|
+
/*
|
|
2570
|
+
* Find CEC
|
|
2571
|
+
* z contains valence of cation for exchange species, alk contains cec
|
|
2572
|
+
*/
|
|
2573
|
+
for (j = 1; s_x[i]->rxn_x.token[j].s != NULL; j++)
|
|
2574
|
+
{
|
|
2575
|
+
if (s_x[i]->rxn_x.token[j].s->type == EX)
|
|
2576
|
+
{
|
|
2577
|
+
s_x[i]->alk = s_x[i]->rxn_x.token[j].s->primary->unknown->moles;
|
|
2578
|
+
break;
|
|
2579
|
+
}
|
|
2580
|
+
}
|
|
2581
|
+
/*
|
|
2582
|
+
* Master species is a dummy variable with meaningless activity and mass
|
|
2583
|
+
*/
|
|
2584
|
+
s_x[i]->lg = 0.0;
|
|
2585
|
+
s_x[i]->dg = 0.0;
|
|
2586
|
+
if (s_x[i]->primary != NULL)
|
|
2587
|
+
{
|
|
2588
|
+
break;
|
|
2589
|
+
}
|
|
2590
|
+
/*
|
|
2591
|
+
* All other species
|
|
2592
|
+
*/
|
|
2593
|
+
/* modific 29 july 2005... */
|
|
2594
|
+
if (s_x[i]->equiv != 0 && s_x[i]->alk > 0)
|
|
2595
|
+
{
|
|
2596
|
+
s_x[i]->lg = log10(fabs(s_x[i]->equiv) / s_x[i]->alk);
|
|
2597
|
+
}
|
|
2598
|
+
if (use.Get_exchange_ptr()->Get_pitzer_exchange_gammas())
|
|
2599
|
+
{
|
|
2600
|
+
/* Assume equal gamma's of solute and exchangeable species... */
|
|
2601
|
+
for (j = 1; s_x[i]->rxn_x.token[j].s != NULL; j++)
|
|
2602
|
+
{
|
|
2603
|
+
if (s_x[i]->rxn_x.token[j].s->type == EX)
|
|
2604
|
+
continue;
|
|
2605
|
+
coef = s_x[i]->rxn_x.token[j].coef;
|
|
2606
|
+
s_x[i]->lg += coef * s_x[i]->rxn_x.token[j].s->lg;
|
|
2607
|
+
}
|
|
2608
|
+
}
|
|
2609
|
+
if (s_x[i]->a_f && s_x[i]->primary == NULL && s_x[i]->moles)
|
|
2610
|
+
gammas_a_f(i); // appt
|
|
2611
|
+
}
|
|
2612
|
+
}
|
|
2613
|
+
}
|
|
2614
|
+
/* ...end modific 29 july 2005 */
|
|
2615
|
+
|
|
2616
|
+
return (OK);
|
|
2617
|
+
}
|
|
2618
|
+
/* ---------------------------------------------------------------------- */
|
|
2619
|
+
void Phreeqc::
|
|
2620
|
+
pitzer_make_lists(void)
|
|
2621
|
+
/* ---------------------------------------------------------------------- */
|
|
2622
|
+
{
|
|
2623
|
+
double log_min = log10(MIN_TOTAL);
|
|
2624
|
+
s_list.clear();
|
|
2625
|
+
cation_list.clear();
|
|
2626
|
+
neutral_list.clear();
|
|
2627
|
+
anion_list.clear();
|
|
2628
|
+
ion_list.clear();
|
|
2629
|
+
param_list.clear();
|
|
2630
|
+
OTEMP = -100.0;
|
|
2631
|
+
for (int j = 0; j < 3; j++)
|
|
2632
|
+
{
|
|
2633
|
+
int min, max;
|
|
2634
|
+
switch (j)
|
|
2635
|
+
{
|
|
2636
|
+
case 0:
|
|
2637
|
+
min = 0;
|
|
2638
|
+
max = count_cations;
|
|
2639
|
+
break;
|
|
2640
|
+
case 1:
|
|
2641
|
+
min = (int)s.size();
|
|
2642
|
+
max = (int)s.size() + count_neutrals;
|
|
2643
|
+
break;
|
|
2644
|
+
case 2:
|
|
2645
|
+
min = 2* (int)s.size();
|
|
2646
|
+
max = 2* (int)s.size() + count_anions;
|
|
2647
|
+
break;
|
|
2648
|
+
}
|
|
2649
|
+
for (int i = min; i < max; i++)
|
|
2650
|
+
{
|
|
2651
|
+
IPRSNT[i] = FALSE;
|
|
2652
|
+
M[i] = 0.0;
|
|
2653
|
+
if ((spec[i] != NULL && spec[i]->in == TRUE) ||
|
|
2654
|
+
(ICON == TRUE && i == IC))
|
|
2655
|
+
{
|
|
2656
|
+
if (spec[i]->type == EX ||
|
|
2657
|
+
spec[i]->type == SURF || spec[i]->type == SURF_PSI)
|
|
2658
|
+
continue;
|
|
2659
|
+
IPRSNT[i] = TRUE;
|
|
2660
|
+
s_list.push_back(i);
|
|
2661
|
+
if (i < (int)s.size())
|
|
2662
|
+
{
|
|
2663
|
+
cation_list.push_back(i);
|
|
2664
|
+
}
|
|
2665
|
+
if (i >= (int)s.size() && i < 2* (int)s.size())
|
|
2666
|
+
{
|
|
2667
|
+
neutral_list.push_back(i);
|
|
2668
|
+
}
|
|
2669
|
+
if (i >= 2* (int)s.size())
|
|
2670
|
+
{
|
|
2671
|
+
anion_list.push_back(i);
|
|
2672
|
+
}
|
|
2673
|
+
if (i < (int)s.size() || i >= 2* (int)s.size())
|
|
2674
|
+
{
|
|
2675
|
+
ion_list.push_back(i);
|
|
2676
|
+
}
|
|
2677
|
+
if (spec[i]->lm > log_min)
|
|
2678
|
+
{
|
|
2679
|
+
M[i] = under(spec[i]->lm);
|
|
2680
|
+
}
|
|
2681
|
+
}
|
|
2682
|
+
}
|
|
2683
|
+
}
|
|
2684
|
+
if (ICON == TRUE)
|
|
2685
|
+
{
|
|
2686
|
+
IPRSNT[IC] = TRUE;
|
|
2687
|
+
}
|
|
2688
|
+
for (int i = 0; i < (int)pitz_params.size(); i++)
|
|
2689
|
+
{
|
|
2690
|
+
/*
|
|
2691
|
+
TYPE_B0, TYPE_B1, TYPE_B2, TYPE_C0, TYPE_THETA, TYPE_LAMBDA, TYPE_ZETA,
|
|
2692
|
+
TYPE_PSI, TYPE_ETHETA, TYPE_ALPHAS, TYPE_MU, TYPE_ETA, TYPE_Other,
|
|
2693
|
+
TYPE_SIT_EPSILON, TYPE_SIT_EPSILON_MU
|
|
2694
|
+
*/
|
|
2695
|
+
int i0 = pitz_params[i]->ispec[0];
|
|
2696
|
+
int i1 = pitz_params[i]->ispec[1];
|
|
2697
|
+
if (IPRSNT[i0] == FALSE || IPRSNT[i1] == FALSE) continue;
|
|
2698
|
+
int i2 = pitz_params[i]->ispec[2];
|
|
2699
|
+
if (pitz_params[i]->type == TYPE_PSI ||
|
|
2700
|
+
pitz_params[i]->type == TYPE_ZETA ||
|
|
2701
|
+
pitz_params[i]->type == TYPE_MU ||
|
|
2702
|
+
pitz_params[i]->type == TYPE_ETA)
|
|
2703
|
+
{
|
|
2704
|
+
if (IPRSNT[i2] == FALSE)
|
|
2705
|
+
continue;
|
|
2706
|
+
}
|
|
2707
|
+
param_list.push_back(i);
|
|
2708
|
+
}
|
|
2709
|
+
}
|